AlfalfaGEDB | MS.gene68403

M. sativa cultivar XinJiangDaYe / MS.gene68403

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68403.t1	XP_003590172.1	91.5	188	16	0	1	188	1	188	5.10E-95	357.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68403.t1	Q9FY93	33.8	145	83	5	13	154	22	156	1.4e-11	71.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68403.t1	G7I6N9	91.5	188	16	0	1	188	1	188	3.7e-95	357.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene68403.t1	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68403.t1	MTR_1g045470	91.489	188	16	0	1	188	1	188	1.66e-129	367
MS.gene68403.t1	MTR_7g116460	62.564	195	61	2	1	183	1	195	5.14e-82	242
MS.gene68403.t1	MTR_1g053575	65.263	190	47	5	1	187	1	174	3.00e-75	229
MS.gene68403.t1	MTR_1g019820	54.167	96	30	2	95	177	2	96	2.50e-23	92.8
MS.gene68403.t1	MTR_7g100990	34.194	155	83	6	13	157	19	164	3.58e-16	75.1
MS.gene68403.t1	MTR_7g005280	32.639	144	85	4	13	154	23	156	8.08e-16	73.6
MS.gene68403.t1	MTR_2g093810	30.726	179	101	8	13	180	22	188	1.17e-12	65.5
MS.gene68403.t1	MTR_4g089135	33.858	127	75	4	13	137	23	142	1.55e-11	62.4
MS.gene68403.t1	MTR_8g063550	30.065	153	93	8	11	157	12	156	1.89e-11	62.4
MS.gene68403.t1	MTR_8g063550	30.065	153	93	8	11	157	12	156	2.06e-11	62.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68403.t1	AT5G13180	33.793	145	83	5	13	154	22	156	1.51e-14	70.1
MS.gene68403.t1	AT5G62380	32.026	153	95	6	13	162	15	161	2.68e-13	67.4
MS.gene68403.t1	AT5G62380	32.026	153	95	6	13	162	15	161	2.68e-13	67.4
MS.gene68403.t1	AT3G10480	32.895	152	88	8	13	158	35	178	4.37e-13	67.0
MS.gene68403.t1	AT2G24430	30.201	149	93	6	13	157	24	165	1.80e-12	64.7
MS.gene68403.t1	AT2G24430	30.201	149	93	6	13	157	24	165	1.80e-12	64.7
MS.gene68403.t1	AT5G08790	32.275	189	105	8	3	181	5	180	1.93e-12	64.7
MS.gene68403.t1	AT3G10480	32.680	153	88	8	13	158	35	179	2.84e-12	64.7
MS.gene68403.t1	AT2G33480	31.507	146	84	6	13	154	23	156	9.83e-12	62.4
MS.gene68403.t1	AT3G15510	32.468	154	89	6	13	162	25	167	1.25e-11	62.8

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Find 42 sgRNAs with CRISPR-Local

Find 56 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATCCATGGGAGATTT+GGG	0.379921	1.3:-27031087	MS.gene68403:CDS
AAAGACAAGAACCAAATCCT+CGG	0.605189	1.3:-27030915	MS.gene68403:CDS
AACTCTTCCCAAATCTCCCA+TGG	0.530624	1.3:+27031080	None:intergenic
AAGAGTGACACTTCCCAAGA+TGG	0.562341	1.3:-27030867	MS.gene68403:CDS
AATCTCCCATGGATTCTTTG+CGG	0.489258	1.3:+27031091	None:intergenic
AATGGGTGCGATAACCTTAT+TGG	0.291794	1.3:+27031208	None:intergenic
ACACTTCCCAAGATGGTGGA+TGG	0.575047	1.3:-27030860	MS.gene68403:CDS
ACAGGTACAGTGACTGCGGC+AGG	0.546185	1.3:+27030595	None:intergenic
ACAGTGACTGCGGCAGGTTC+AGG	0.347861	1.3:+27030601	None:intergenic
ACTTACAGGTACAGTGACTG+CGG	0.729652	1.3:+27030591	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCATGCACCAAATAACT+AGG	+	chr1.3:27031080-27031099	None:intergenic	30.0%
AATCATGCACCAAATAACTA+GGG	+	chr1.3:27031079-27031098	None:intergenic	30.0%
GATTGCTTATCAATGAATTG+TGG	+	chr1.3:27031010-27031029	None:intergenic	30.0%
TCAAGAATGGTGATATGATT+GGG	+	chr1.3:27030696-27030715	None:intergenic	30.0%
TTCAAGAATGGTGATATGAT+TGG	+	chr1.3:27030697-27030716	None:intergenic	30.0%
TTCATTGATAAGCAATCCTT+TGG	-	chr1.3:27031013-27031032	MS.gene68403:CDS	30.0%
AAAGAATCCATGGGAGATTT+GGG	-	chr1.3:27030737-27030756	MS.gene68403:intron	35.0%
AAAGACAAGAACCAAATCCT+CGG	-	chr1.3:27030909-27030928	MS.gene68403:CDS	35.0%
AGTGGCAGATTTCTTCTTTA+AGG	+	chr1.3:27030817-27030836	None:intergenic	35.0%
CTTATTGGAAGAAGAGTTGA+GGG	+	chr1.3:27030604-27030623	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	27030597	27031249	27030597	ID=MS.gene68403
chr1.3	mRNA	27030597	27031249	27030597	ID=MS.gene68403.t1;Parent=MS.gene68403
chr1.3	exon	27030812	27031249	27030812	ID=MS.gene68403.t1.exon1;Parent=MS.gene68403.t1
chr1.3	CDS	27030812	27031249	27030812	ID=cds.MS.gene68403.t1;Parent=MS.gene68403.t1
chr1.3	exon	27030597	27030722	27030597	ID=MS.gene68403.t1.exon2;Parent=MS.gene68403.t1
chr1.3	CDS	27030597	27030722	27030597	ID=cds.MS.gene68403.t1;Parent=MS.gene68403.t1

Gene Sequence

>MS.gene68403

ATGGCCCTCAACTCTTCTTCCAATAAGGTTATCGCACCCATTGATAATGAACTTCTACAACAATTCCTCTACAACAAAATTCACAACAAACCTTTGCCCAATCATATCACCATTCTTGAATATGATTTGTTCGGCACCGCAAAGAATCCATGGGAGATTTGGGAAGAGTTCGGAACTTCCTACTCGTATCGTGGAAAAGACTTATACTTCTTTACAACCTTAAAGAAGAAATCTGCCACTAGCTCACGCGTAGCTCGCACCATTGGACTTGGTAGATGGGAAGGTGAAGACGCTGGAAAAAATATATTGAGCAAAGACAAGAACCAAATCCTCGGCATGAAAAAACGTTTTCGCTTTGAGAAGAGTGACACTTCCCAAGATGGTGGATGGATCTTGCATGAATATAGCCTCCACAATTCATTGATAAGCAATCCTTTGGTAAGCCCTAGGTTCCAATATCTGTAGCGTTTGATTCTTAGCCCTAGTTATTTGGTGCATGATTTGATTTTGTATCTTGTTTTTTGCAGGCCAATAATTATGTTCTATGCAGATTTAGAAAGAATTGCACTCACTTACCTGTAACCAAAAATATTGTTGCACAAGATAAACCAAGAAAGACAGTCGTTCCTGAACCTGCCGCAGTCACTGTACCT

Protein sequence

>MS.gene68403.t1

MALNSSSNKVIAPIDNELLQQFLYNKIHNKPLPNHITILEYDLFGTAKNPWEIWEEFGTSYSYRGKDLYFFTTLKKKSATSSRVARTIGLGRWEGEDAGKNILSKDKNQILGMKKRFRFEKSDTSQDGGWILHEYSLHNSLISNPLANNYVLCRFRKNCTHLPVTKNIVAQDKPRKTVVPEPAAVTVP