Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68430.t1 | XP_013469274.1 | 94.6 | 276 | 11 | 4 | 1 | 274 | 1 | 274 | 3.40E-100 | 375.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68430.t1 | Q681X4 | 44.0 | 184 | 70 | 5 | 102 | 277 | 76 | 234 | 5.0e-28 | 126.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68430.t1 | A0A072VNA7 | 94.6 | 276 | 11 | 4 | 1 | 274 | 1 | 274 | 2.4e-100 | 375.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene68430.t1 | TF | C2H2 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68430.t1 | MTR_1g090703 | 94.413 | 358 | 9 | 7 | 1 | 350 | 1 | 355 | 0.0 | 673 |
MS.gene68430.t1 | MTR_4g057230 | 36.828 | 372 | 121 | 12 | 8 | 350 | 7 | 293 | 8.93e-55 | 181 |
MS.gene68430.t1 | MTR_1g062780 | 37.465 | 355 | 147 | 13 | 9 | 350 | 5 | 297 | 8.47e-51 | 171 |
MS.gene68430.t1 | MTR_2g084315 | 35.817 | 349 | 132 | 11 | 21 | 350 | 18 | 293 | 3.50e-46 | 159 |
MS.gene68430.t1 | MTR_1g077730 | 50.820 | 183 | 44 | 8 | 143 | 300 | 32 | 193 | 5.92e-44 | 150 |
MS.gene68430.t1 | MTR_1g077700 | 48.555 | 173 | 55 | 9 | 134 | 300 | 41 | 185 | 1.33e-28 | 110 |
MS.gene68430.t1 | MTR_1g067650 | 42.138 | 159 | 57 | 5 | 157 | 315 | 39 | 162 | 7.80e-28 | 107 |
MS.gene68430.t1 | MTR_1g067640 | 42.568 | 148 | 53 | 4 | 157 | 304 | 38 | 153 | 2.17e-27 | 106 |
MS.gene68430.t1 | MTR_7g023560 | 42.581 | 155 | 33 | 5 | 103 | 257 | 12 | 110 | 1.10e-25 | 102 |
MS.gene68430.t1 | MTR_4g028610 | 36.842 | 228 | 114 | 9 | 99 | 301 | 158 | 380 | 5.36e-25 | 105 |
MS.gene68430.t1 | MTR_7g100100 | 42.667 | 150 | 48 | 5 | 157 | 304 | 34 | 147 | 1.90e-24 | 98.2 |
MS.gene68430.t1 | MTR_1g067660 | 38.509 | 161 | 41 | 5 | 99 | 259 | 7 | 109 | 2.16e-22 | 92.8 |
MS.gene68430.t1 | MTR_1g115345 | 49.505 | 101 | 26 | 3 | 156 | 256 | 44 | 119 | 2.73e-22 | 93.6 |
MS.gene68430.t1 | MTR_4g027440 | 39.310 | 145 | 69 | 3 | 157 | 301 | 220 | 345 | 5.44e-20 | 90.5 |
MS.gene68430.t1 | MTR_4g109340 | 34.591 | 159 | 77 | 5 | 157 | 304 | 348 | 490 | 7.63e-15 | 75.9 |
MS.gene68430.t1 | MTR_1g106730 | 32.414 | 145 | 67 | 3 | 157 | 301 | 83 | 196 | 1.66e-14 | 72.8 |
MS.gene68430.t1 | MTR_1g018420 | 30.275 | 218 | 104 | 8 | 83 | 300 | 24 | 193 | 1.12e-13 | 70.1 |
MS.gene68430.t1 | MTR_3g102980 | 29.048 | 210 | 100 | 5 | 94 | 303 | 44 | 204 | 8.12e-13 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68430.t1 | AT5G04390 | 46.070 | 369 | 153 | 15 | 15 | 350 | 7 | 362 | 2.10e-84 | 260 |
MS.gene68430.t1 | AT3G10470 | 42.386 | 394 | 150 | 12 | 22 | 350 | 17 | 398 | 3.78e-76 | 240 |
MS.gene68430.t1 | AT2G28200 | 40.116 | 344 | 123 | 14 | 20 | 350 | 13 | 286 | 6.02e-52 | 174 |
MS.gene68430.t1 | AT5G03510 | 36.550 | 342 | 144 | 14 | 19 | 350 | 14 | 292 | 4.23e-43 | 151 |
MS.gene68430.t1 | AT2G37430 | 35.266 | 207 | 67 | 8 | 102 | 304 | 16 | 159 | 2.45e-23 | 95.5 |
MS.gene68430.t1 | AT3G53600 | 36.424 | 151 | 50 | 3 | 157 | 304 | 49 | 156 | 1.82e-21 | 90.5 |
MS.gene68430.t1 | AT1G02030 | 35.897 | 156 | 52 | 5 | 157 | 312 | 160 | 267 | 4.58e-17 | 80.5 |
MS.gene68430.t1 | AT3G49930 | 32.515 | 163 | 58 | 5 | 98 | 255 | 56 | 171 | 2.11e-16 | 77.4 |
MS.gene68430.t1 | AT5G67450 | 31.646 | 158 | 77 | 4 | 98 | 255 | 60 | 186 | 1.43e-14 | 72.8 |
MS.gene68430.t1 | AT3G46070 | 39.623 | 106 | 28 | 2 | 156 | 256 | 35 | 109 | 1.61e-14 | 71.2 |
MS.gene68430.t1 | AT1G02040 | 32.278 | 158 | 91 | 4 | 98 | 255 | 106 | 247 | 4.43e-13 | 69.7 |
MS.gene68430.t1 | AT5G56200 | 41.509 | 106 | 54 | 3 | 159 | 263 | 344 | 442 | 1.69e-12 | 68.6 |
MS.gene68430.t1 | AT3G19580 | 30.909 | 165 | 75 | 7 | 92 | 255 | 61 | 187 | 2.23e-12 | 67.0 |
MS.gene68430.t1 | AT3G19580 | 30.909 | 165 | 75 | 7 | 92 | 255 | 61 | 187 | 2.23e-12 | 67.0 |
MS.gene68430.t1 | AT4G35280 | 32.515 | 163 | 58 | 5 | 94 | 255 | 133 | 244 | 2.02e-11 | 64.3 |
MS.gene68430.t1 | AT2G17180 | 29.193 | 161 | 64 | 4 | 98 | 255 | 120 | 233 | 4.67e-11 | 63.2 |
Find 77 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGCAAATTGTTTGATTCTAT+TGG | 0.240497 | 1.1:+66212736 | MS.gene68430:CDS |
ATTCATGGAAGCTGCTACTT+TGG | 0.245240 | 1.1:+66212847 | MS.gene68430:CDS |
CTCTTTGACACCAATGGCTT+TGG | 0.266424 | 1.1:+66213234 | MS.gene68430:CDS |
ATTTGTTGTTGTTCTTGTTC+AGG | 0.270280 | 1.1:-66212440 | None:intergenic |
GAAGCTGCTACTTTGGATTC+TGG | 0.278220 | 1.1:+66212854 | MS.gene68430:CDS |
GCTTCTTGTGACTTGCTCTA+TGG | 0.280425 | 1.1:-66212949 | None:intergenic |
TGAGCAATTGCTAAAGCTTT+TGG | 0.285166 | 1.1:-66212971 | None:intergenic |
AGATTGTGGCCTAACCCTTT+TGG | 0.313150 | 1.1:-66212510 | None:intergenic |
TCTAAATCATCAGTGTTCTT+TGG | 0.328815 | 1.1:-66212785 | None:intergenic |
TGTCTTCTCTGCACCAGCTT+TGG | 0.339208 | 1.1:+66213441 | MS.gene68430:CDS |
GAATTAGCAGTGATGGAAAA+AGG | 0.340841 | 1.1:-66212539 | None:intergenic |
AAGGGAAATTGATTTATGAT+TGG | 0.360112 | 1.1:-66213038 | None:intergenic |
CTTCTCTGCACCAGCTTTGG+TGG | 0.364744 | 1.1:+66213444 | MS.gene68430:CDS |
CAACATCAACAACAACAAAA+TGG | 0.377913 | 1.1:+66213373 | MS.gene68430:CDS |
GATTCTCTATGATCATCTTC+AGG | 0.378560 | 1.1:-66213328 | None:intergenic |
GTTCATGAGTGTTCCATTTG+TGG | 0.382713 | 1.1:+66213121 | MS.gene68430:CDS |
AGGGAAATTGATTTATGATT+GGG | 0.394597 | 1.1:-66213037 | None:intergenic |
TTTCTAGGATGATCTTCATC+AGG | 0.398775 | 1.1:-66213259 | None:intergenic |
TTCCCTTCATTTCAAGCCCT+TGG | 0.399176 | 1.1:+66212923 | MS.gene68430:CDS |
ATATAGCAGTAGAAAATTCA+TGG | 0.401514 | 1.1:+66212832 | MS.gene68430:CDS |
TTTGTTGTTGTTCTTGTTCA+GGG | 0.401552 | 1.1:-66212439 | None:intergenic |
TGTGGTTCTGAATTCACATC+TGG | 0.408068 | 1.1:+66213139 | MS.gene68430:CDS |
TGGAGATGTATTATTGTTGT+TGG | 0.409882 | 1.1:-66212654 | None:intergenic |
ATCACTGCTAATTCTTCAAC+TGG | 0.411257 | 1.1:+66212548 | MS.gene68430:CDS |
GTGCGCGGTGTCGCCTCATA+TGG | 0.417376 | 1.1:-66213177 | None:intergenic |
TCTTCTACATAAGAAGTTGT+TGG | 0.422141 | 1.1:-66212674 | None:intergenic |
TACCATTGTTATTCAATTGA+AGG | 0.424863 | 1.1:-66213057 | None:intergenic |
AAGCAACAATAACAAGTCTA+AGG | 0.436995 | 1.1:+66213099 | MS.gene68430:CDS |
CCTTCATTTCAAGCCCTTGG+TGG | 0.438074 | 1.1:+66212926 | MS.gene68430:CDS |
CCACCAAGGGCTTGAAATGA+AGG | 0.443987 | 1.1:-66212926 | None:intergenic |
ACTGGTGAAGGAGGAGGAGG+AGG | 0.445485 | 1.1:+66212566 | MS.gene68430:CDS |
TGTTGTTCTTGTTCAGGGGC+AGG | 0.447493 | 1.1:-66212434 | None:intergenic |
AAGCACTAGGTGGCCATATG+AGG | 0.457238 | 1.1:+66213164 | MS.gene68430:CDS |
TGTGAATTCAGAACCACAAA+TGG | 0.467209 | 1.1:-66213134 | None:intergenic |
ACCATTGTTATTCAATTGAA+GGG | 0.467288 | 1.1:-66213056 | None:intergenic |
TCAATTGAATAACAATGGTA+AGG | 0.472860 | 1.1:+66213060 | MS.gene68430:CDS |
TCAAAGGCAAAAGAACCAAA+AGG | 0.477828 | 1.1:+66212495 | MS.gene68430:CDS |
ACTTTGGATTCTGGAAGAGC+TGG | 0.481432 | 1.1:+66212863 | MS.gene68430:CDS |
TATTGATGAAGAATATGATA+TGG | 0.482765 | 1.1:+66212715 | MS.gene68430:CDS |
CTATGATCATCTTCAGGTGC+AGG | 0.486557 | 1.1:-66213322 | None:intergenic |
GCAAAAGAACCAAAAGGGTT+AGG | 0.488623 | 1.1:+66212501 | MS.gene68430:CDS |
ATTGTTGTTGGTGATGATGA+TGG | 0.489814 | 1.1:-66212642 | None:intergenic |
AAGATCATCCTAGAAAGAAA+AGG | 0.498656 | 1.1:+66213266 | MS.gene68430:CDS |
AAGAACACTGATGATTTAGA+TGG | 0.500109 | 1.1:+66212788 | MS.gene68430:CDS |
TATATTGGTGATTTCTCTAG+AGG | 0.510307 | 1.1:-66212471 | None:intergenic |
TTGTTGTTGTTGATGTTGCT+TGG | 0.510313 | 1.1:-66213368 | None:intergenic |
TAATGACAATCCACCAAAGC+TGG | 0.512389 | 1.1:-66213454 | None:intergenic |
CACACTCTCTTTGACACCAA+TGG | 0.515862 | 1.1:+66213228 | MS.gene68430:CDS |
AGTTGAAGAATTAGCAGTGA+TGG | 0.516949 | 1.1:-66212546 | None:intergenic |
TCCCTTCAATTGAATAACAA+TGG | 0.518412 | 1.1:+66213055 | MS.gene68430:CDS |
GGCTGCTGCAGAAGTTCCGA+CGG | 0.536822 | 1.1:-66213200 | None:intergenic |
TCATCAGGTTCCAAAGCCAT+TGG | 0.537240 | 1.1:-66213244 | None:intergenic |
GACTTGCTCTATGGCCACCA+AGG | 0.541956 | 1.1:-66212940 | None:intergenic |
TCTTCAACTGGTGAAGGAGG+AGG | 0.546134 | 1.1:+66212560 | MS.gene68430:CDS |
GAAATCACCAATATAATCAA+AGG | 0.551277 | 1.1:+66212479 | MS.gene68430:CDS |
CAGAAGTTCCGACGGGTGCG+CGG | 0.561247 | 1.1:-66213192 | None:intergenic |
TGTCAAAGAGAGTGTGGTGT+TGG | 0.565170 | 1.1:-66213221 | None:intergenic |
TCAACTGGTGAAGGAGGAGG+AGG | 0.569017 | 1.1:+66212563 | MS.gene68430:CDS |
CAAAGGCAAAAGAACCAAAA+GGG | 0.572371 | 1.1:+66212496 | MS.gene68430:CDS |
CAATTGAATAACAATGGTAA+GGG | 0.574433 | 1.1:+66213061 | MS.gene68430:CDS |
GCTAATTCTTCAACTGGTGA+AGG | 0.577726 | 1.1:+66212554 | MS.gene68430:CDS |
AACACTGATGATTTAGATGG+TGG | 0.578201 | 1.1:+66212791 | MS.gene68430:CDS |
TTCACATCTGGTCAAGCACT+AGG | 0.585148 | 1.1:+66213151 | MS.gene68430:CDS |
TTGATGTTGCTTGGAAGCAA+AGG | 0.585683 | 1.1:-66213359 | None:intergenic |
TTGTTGTTGTTCTTGTTCAG+GGG | 0.589920 | 1.1:-66212438 | None:intergenic |
AATTCTTCAACTGGTGAAGG+AGG | 0.595064 | 1.1:+66212557 | MS.gene68430:CDS |
CACCAAGGGCTTGAAATGAA+GGG | 0.598701 | 1.1:-66212925 | None:intergenic |
ACTTGCTCTATGGCCACCAA+GGG | 0.599521 | 1.1:-66212939 | None:intergenic |
AGGCGACACCGCGCACCCGT+CGG | 0.608219 | 1.1:+66213184 | MS.gene68430:CDS |
AATGGTAAGGGAAATCTACA+TGG | 0.611478 | 1.1:+66213073 | MS.gene68430:CDS |
GCTGCTGCAGAAGTTCCGAC+GGG | 0.617092 | 1.1:-66213199 | None:intergenic |
ATTGGCACAAGGACAAGCAA+AGG | 0.628461 | 1.1:+66212754 | MS.gene68430:CDS |
TGTTTGATTCTATTGGCACA+AGG | 0.635084 | 1.1:+66212743 | MS.gene68430:CDS |
GATCATCTTCAGGTGCAGGA+AGG | 0.641044 | 1.1:-66213318 | None:intergenic |
GGTAAGGGAAATCTACATGG+TGG | 0.669700 | 1.1:+66213076 | MS.gene68430:CDS |
CATTGGTGTCAAAGAGAGTG+TGG | 0.684820 | 1.1:-66213227 | None:intergenic |
ACATCTGGTCAAGCACTAGG+TGG | 0.706303 | 1.1:+66213154 | MS.gene68430:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTGATGAAGAATATGATA+TGG | + | chr1.1:66212715-66212734 | MS.gene68430:CDS | 20.0% |
! | ATATAGCAGTAGAAAATTCA+TGG | + | chr1.1:66212832-66212851 | MS.gene68430:CDS | 25.0% |
! | CAATTGAATAACAATGGTAA+GGG | + | chr1.1:66213061-66213080 | MS.gene68430:CDS | 25.0% |
! | GAAATCACCAATATAATCAA+AGG | + | chr1.1:66212479-66212498 | MS.gene68430:CDS | 25.0% |
! | TCAATTGAATAACAATGGTA+AGG | + | chr1.1:66213060-66213079 | MS.gene68430:CDS | 25.0% |
!! | AAAACATTCCTTTTCTTTCT+AGG | - | chr1.1:66213277-66213296 | None:intergenic | 25.0% |
!! | AAGGGAAATTGATTTATGAT+TGG | - | chr1.1:66213041-66213060 | None:intergenic | 25.0% |
!! | ACCATTGTTATTCAATTGAA+GGG | - | chr1.1:66213059-66213078 | None:intergenic | 25.0% |
!! | AGGGAAATTGATTTATGATT+GGG | - | chr1.1:66213040-66213059 | None:intergenic | 25.0% |
!! | GAATGTTTTGTCTTTGAATT+TGG | + | chr1.1:66213288-66213307 | MS.gene68430:CDS | 25.0% |
!! | TACCATTGTTATTCAATTGA+AGG | - | chr1.1:66213060-66213079 | None:intergenic | 25.0% |
!! | TCTTTTGCCTTTGATTATAT+TGG | - | chr1.1:66212489-66212508 | None:intergenic | 25.0% |
AAGAACACTGATGATTTAGA+TGG | + | chr1.1:66212788-66212807 | MS.gene68430:CDS | 30.0% | |
AAGATCATCCTAGAAAGAAA+AGG | + | chr1.1:66213266-66213285 | MS.gene68430:CDS | 30.0% | |
AAGCAACAATAACAAGTCTA+AGG | + | chr1.1:66213099-66213118 | MS.gene68430:CDS | 30.0% | |
CAACATCAACAACAACAAAA+TGG | + | chr1.1:66213373-66213392 | MS.gene68430:CDS | 30.0% | |
GGCAAATTGTTTGATTCTAT+TGG | + | chr1.1:66212736-66212755 | MS.gene68430:CDS | 30.0% | |
TCCCTTCAATTGAATAACAA+TGG | + | chr1.1:66213055-66213074 | MS.gene68430:CDS | 30.0% | |
TCTAAATCATCAGTGTTCTT+TGG | - | chr1.1:66212788-66212807 | None:intergenic | 30.0% | |
TCTTCTACATAAGAAGTTGT+TGG | - | chr1.1:66212677-66212696 | None:intergenic | 30.0% | |
TGGAGATGTATTATTGTTGT+TGG | - | chr1.1:66212657-66212676 | None:intergenic | 30.0% | |
! | TATATTGGTGATTTCTCTAG+AGG | - | chr1.1:66212474-66212493 | None:intergenic | 30.0% |
!! | ATTTGTTGTTGTTCTTGTTC+AGG | - | chr1.1:66212443-66212462 | None:intergenic | 30.0% |
!! | TTTGTTGTTGTTCTTGTTCA+GGG | - | chr1.1:66212442-66212461 | None:intergenic | 30.0% |
AACACTGATGATTTAGATGG+TGG | + | chr1.1:66212791-66212810 | MS.gene68430:CDS | 35.0% | |
AATGGTAAGGGAAATCTACA+TGG | + | chr1.1:66213073-66213092 | MS.gene68430:CDS | 35.0% | |
AGTTGAAGAATTAGCAGTGA+TGG | - | chr1.1:66212549-66212568 | None:intergenic | 35.0% | |
ATCACTGCTAATTCTTCAAC+TGG | + | chr1.1:66212548-66212567 | MS.gene68430:CDS | 35.0% | |
CAAAGGCAAAAGAACCAAAA+GGG | + | chr1.1:66212496-66212515 | MS.gene68430:CDS | 35.0% | |
GATTCTCTATGATCATCTTC+AGG | - | chr1.1:66213331-66213350 | None:intergenic | 35.0% | |
TCAAAGGCAAAAGAACCAAA+AGG | + | chr1.1:66212495-66212514 | MS.gene68430:CDS | 35.0% | |
TGTGAATTCAGAACCACAAA+TGG | - | chr1.1:66213137-66213156 | None:intergenic | 35.0% | |
TGTTTGATTCTATTGGCACA+AGG | + | chr1.1:66212743-66212762 | MS.gene68430:CDS | 35.0% | |
! | GAAAAAGGTATAGGAGATTG+TGG | - | chr1.1:66212527-66212546 | None:intergenic | 35.0% |
! | GAATTAGCAGTGATGGAAAA+AGG | - | chr1.1:66212542-66212561 | None:intergenic | 35.0% |
! | TGAGCAATTGCTAAAGCTTT+TGG | - | chr1.1:66212974-66212993 | None:intergenic | 35.0% |
! | TTGTTGTTGTTCTTGTTCAG+GGG | - | chr1.1:66212441-66212460 | None:intergenic | 35.0% |
! | TTGTTGTTGTTGATGTTGCT+TGG | - | chr1.1:66213371-66213390 | None:intergenic | 35.0% |
!! | ATTGTTGTTGGTGATGATGA+TGG | - | chr1.1:66212645-66212664 | None:intergenic | 35.0% |
!! | TTTCTAGGATGATCTTCATC+AGG | - | chr1.1:66213262-66213281 | None:intergenic | 35.0% |
AATTCTTCAACTGGTGAAGG+AGG | + | chr1.1:66212557-66212576 | MS.gene68430:CDS | 40.0% | |
GCAAAAGAACCAAAAGGGTT+AGG | + | chr1.1:66212501-66212520 | MS.gene68430:CDS | 40.0% | |
GCTAATTCTTCAACTGGTGA+AGG | + | chr1.1:66212554-66212573 | MS.gene68430:CDS | 40.0% | |
GTTCATGAGTGTTCCATTTG+TGG | + | chr1.1:66213121-66213140 | MS.gene68430:CDS | 40.0% | |
TAATGACAATCCACCAAAGC+TGG | - | chr1.1:66213457-66213476 | None:intergenic | 40.0% | |
! | ATTCATGGAAGCTGCTACTT+TGG | + | chr1.1:66212847-66212866 | MS.gene68430:CDS | 40.0% |
! | GCAGTGATGGAAAAAGGTAT+AGG | - | chr1.1:66212536-66212555 | None:intergenic | 40.0% |
! | TTGATGTTGCTTGGAAGCAA+AGG | - | chr1.1:66213362-66213381 | None:intergenic | 40.0% |
!! | TGTGGTTCTGAATTCACATC+TGG | + | chr1.1:66213139-66213158 | MS.gene68430:CDS | 40.0% |
!!! | GTTGCTGCTGTTGTTGTTTT+TGG | - | chr1.1:66213399-66213418 | None:intergenic | 40.0% |
ATTGGCACAAGGACAAGCAA+AGG | + | chr1.1:66212754-66212773 | MS.gene68430:CDS | 45.0% | |
CACACTCTCTTTGACACCAA+TGG | + | chr1.1:66213228-66213247 | MS.gene68430:CDS | 45.0% | |
CACCAAGGGCTTGAAATGAA+GGG | - | chr1.1:66212928-66212947 | None:intergenic | 45.0% | |
CTATGATCATCTTCAGGTGC+AGG | - | chr1.1:66213325-66213344 | None:intergenic | 45.0% | |
CTCTTTGACACCAATGGCTT+TGG | + | chr1.1:66213234-66213253 | MS.gene68430:CDS | 45.0% | |
GGTAAGGGAAATCTACATGG+TGG | + | chr1.1:66213076-66213095 | MS.gene68430:CDS | 45.0% | |
TCATCAGGTTCCAAAGCCAT+TGG | - | chr1.1:66213247-66213266 | None:intergenic | 45.0% | |
TTCACATCTGGTCAAGCACT+AGG | + | chr1.1:66213151-66213170 | MS.gene68430:CDS | 45.0% | |
TTCCCTTCATTTCAAGCCCT+TGG | + | chr1.1:66212923-66212942 | MS.gene68430:CDS | 45.0% | |
! | ACTTTGGATTCTGGAAGAGC+TGG | + | chr1.1:66212863-66212882 | MS.gene68430:CDS | 45.0% |
! | AGATTGTGGCCTAACCCTTT+TGG | - | chr1.1:66212513-66212532 | None:intergenic | 45.0% |
! | TGTCAAAGAGAGTGTGGTGT+TGG | - | chr1.1:66213224-66213243 | None:intergenic | 45.0% |
!! | CATTGGTGTCAAAGAGAGTG+TGG | - | chr1.1:66213230-66213249 | None:intergenic | 45.0% |
!! | GAAGCTGCTACTTTGGATTC+TGG | + | chr1.1:66212854-66212873 | MS.gene68430:CDS | 45.0% |
!! | GCTTCTTGTGACTTGCTCTA+TGG | - | chr1.1:66212952-66212971 | None:intergenic | 45.0% |
AAGCACTAGGTGGCCATATG+AGG | + | chr1.1:66213164-66213183 | MS.gene68430:CDS | 50.0% | |
ACATCTGGTCAAGCACTAGG+TGG | + | chr1.1:66213154-66213173 | MS.gene68430:CDS | 50.0% | |
ACTTGCTCTATGGCCACCAA+GGG | - | chr1.1:66212942-66212961 | None:intergenic | 50.0% | |
CCACCAAGGGCTTGAAATGA+AGG | - | chr1.1:66212929-66212948 | None:intergenic | 50.0% | |
CCTTCATTTCAAGCCCTTGG+TGG | + | chr1.1:66212926-66212945 | MS.gene68430:CDS | 50.0% | |
GATCATCTTCAGGTGCAGGA+AGG | - | chr1.1:66213321-66213340 | None:intergenic | 50.0% | |
TCTTCAACTGGTGAAGGAGG+AGG | + | chr1.1:66212560-66212579 | MS.gene68430:CDS | 50.0% | |
TGTCTTCTCTGCACCAGCTT+TGG | + | chr1.1:66213441-66213460 | MS.gene68430:CDS | 50.0% | |
TGTTGTTCTTGTTCAGGGGC+AGG | - | chr1.1:66212437-66212456 | None:intergenic | 50.0% | |
TCAACTGGTGAAGGAGGAGG+AGG | + | chr1.1:66212563-66212582 | MS.gene68430:CDS | 55.0% | |
! | CTTCTCTGCACCAGCTTTGG+TGG | + | chr1.1:66213444-66213463 | MS.gene68430:CDS | 55.0% |
! | GACTTGCTCTATGGCCACCA+AGG | - | chr1.1:66212943-66212962 | None:intergenic | 55.0% |
ACTGGTGAAGGAGGAGGAGG+AGG | + | chr1.1:66212566-66212585 | MS.gene68430:CDS | 60.0% | |
GCTGCTGCAGAAGTTCCGAC+GGG | - | chr1.1:66213202-66213221 | None:intergenic | 60.0% | |
GGCTGCTGCAGAAGTTCCGA+CGG | - | chr1.1:66213203-66213222 | None:intergenic | 60.0% | |
CAGAAGTTCCGACGGGTGCG+CGG | - | chr1.1:66213195-66213214 | None:intergenic | 65.0% | |
GGAGGAGGAGGAGGAGGAAC+AGG | + | chr1.1:66212575-66212594 | MS.gene68430:CDS | 65.0% | |
GGTGAAGGAGGAGGAGGAGG+AGG | + | chr1.1:66212569-66212588 | MS.gene68430:CDS | 65.0% | |
!! | GTGCGCGGTGTCGCCTCATA+TGG | - | chr1.1:66213180-66213199 | None:intergenic | 65.0% |
AGGCGACACCGCGCACCCGT+CGG | + | chr1.1:66213184-66213203 | MS.gene68430:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 66212428 | 66213480 | 66212428 | ID=MS.gene68430 |
chr1.1 | mRNA | 66212428 | 66213480 | 66212428 | ID=MS.gene68430.t1;Parent=MS.gene68430 |
chr1.1 | exon | 66212428 | 66213480 | 66212428 | ID=MS.gene68430.t1.exon1;Parent=MS.gene68430.t1 |
chr1.1 | CDS | 66212428 | 66213480 | 66212428 | ID=cds.MS.gene68430.t1;Parent=MS.gene68430.t1 |
Gene Sequence |
Protein sequence |