AlfalfaGEDB | MS.gene68472

M. sativa cultivar XinJiangDaYe / MS.gene68472

KEGG: K08867
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68472.t1	RHN67279.1	97.3	297	8	0	1	297	1	297	1.10E-165	592.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68472.t1	Q6ICW6	79.8	282	57	0	6	287	11	292	3.4e-134	479.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68472.t1	A0A396INP8	97.3	297	8	0	1	297	1	297	8.2e-166	592.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68472.t1	MTR_3g056010	97.306	297	8	0	1	297	1	297	0.0	608
MS.gene68472.t1	MTR_3g056025	97.297	296	8	0	1	296	1	296	0.0	607
MS.gene68472.t1	MTR_7g029020	89.527	296	31	0	1	296	1	296	0.0	563
MS.gene68472.t1	MTR_3g099940	87.458	295	36	1	1	294	1	295	0.0	540
MS.gene68472.t1	MTR_5g094390	83.451	284	47	0	1	284	2	285	0.0	513
MS.gene68472.t1	MTR_5g097530	75.887	282	68	0	10	291	7	288	9.45e-170	472
MS.gene68472.t1	MTR_0283s0050	76.538	260	61	0	10	269	7	266	5.00e-158	441
MS.gene68472.t1	MTR_7g114680	62.191	283	104	2	10	290	8	289	3.05e-125	374
MS.gene68472.t1	MTR_1g103850	63.121	282	99	4	11	290	10	288	1.09e-122	367
MS.gene68472.t1	MTR_1g081330	61.837	283	105	2	10	290	8	289	1.35e-122	367

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68472.t1	AT5G55560	79.787	282	57	0	6	287	11	292	1.54e-177	493
MS.gene68472.t1	AT3G48260	64.945	271	95	0	14	284	10	280	8.46e-129	376
MS.gene68472.t1	AT3G04910	62.544	283	103	2	10	290	8	289	1.17e-123	369
MS.gene68472.t1	AT3G22420	58.696	276	113	1	11	286	9	283	3.82e-120	356
MS.gene68472.t1	AT3G22420	58.696	276	113	1	11	286	9	283	8.14e-120	356
MS.gene68472.t1	AT5G28080	59.273	275	111	1	10	284	9	282	1.02e-119	352
MS.gene68472.t1	AT3G22420	58.214	280	116	1	11	290	80	358	1.87e-119	357
MS.gene68472.t1	AT3G22420	58.214	280	116	1	11	290	80	358	3.04e-119	357
MS.gene68472.t1	AT3G51630	61.538	273	105	0	12	284	11	283	1.54e-118	351
MS.gene68472.t1	AT3G51630	61.538	273	105	0	12	284	11	283	1.54e-118	351

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Find 48 sgRNAs with CRISPR-Local

Find 59 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGTCTCGCTCAACCA+AGG	0.579858	3.2:-48401635	MS.gene68472:CDS
AAAGCATTTGATAATGAAGA+AGG	0.507018	3.2:-48402389	MS.gene68472:CDS
AAAGTGTCTCGCTCAACCAA+GGG	0.644670	3.2:-48401634	MS.gene68472:CDS
AAATGTTTCTGAGTCTTTGT+CGG	0.423160	3.2:+48402487	None:intergenic
AAGAAGGAATAGAAGTAGCA+TGG	0.500540	3.2:-48402373	MS.gene68472:CDS
AAGGGCTAGACCTTCTGCTG+AGG	0.666215	3.2:-48401616	MS.gene68472:CDS
AATGTATATTAGGTTAAGAT+TGG	0.380565	3.2:-48401930	MS.gene68472:intron
ACATAAGCATGTTTCTATTA+AGG	0.226294	3.2:-48402153	MS.gene68472:CDS
ACATTGTCACATTCACTATA+TGG	0.341582	3.2:+48401744	None:intergenic
ACTGATCCAACCGGAAGATA+TGG	0.362153	3.2:-48402458	MS.gene68472:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATCTTGAGATAAACAACA+TGG	+	chr3.2:48402089-48402108	None:intergenic	30.0%
ACATTGTCACATTCACTATA+TGG	+	chr3.2:48402322-48402341	None:intergenic	30.0%
ATGGTAGACATATACTCATT+TGG	-	chr3.2:48402262-48402281	MS.gene68472:CDS	30.0%
TAAAGTCTTTCAATCATTGC+AGG	+	chr3.2:48401749-48401768	None:intergenic	30.0%
TGAAACAGAAATAATGTACC+TGG	+	chr3.2:48402054-48402073	None:intergenic	30.0%
TGGAATGTTAGTATTAGAGA+TGG	-	chr3.2:48402282-48402301	MS.gene68472:CDS	30.0%
TGTTGCAAAGATATACAAGA+AGG	-	chr3.2:48402339-48402358	MS.gene68472:CDS	30.0%
TTTATCTTGTTCAAGGATTG+CGG	+	chr3.2:48402382-48402401	None:intergenic	30.0%
AAGAAGGAATAGAAGTAGCA+TGG	-	chr3.2:48401690-48401709	MS.gene68472:CDS	35.0%
AGGTCTCTATGAATGATACA+AGG	+	chr3.2:48401995-48402014	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	48401551	48402534	48401551	ID=MS.gene68472
chr3.2	mRNA	48401551	48402534	48401551	ID=MS.gene68472.t1;Parent=MS.gene68472
chr3.2	exon	48402031	48402534	48402031	ID=MS.gene68472.t1.exon1;Parent=MS.gene68472.t1
chr3.2	CDS	48402031	48402534	48402031	ID=cds.MS.gene68472.t1;Parent=MS.gene68472.t1
chr3.2	exon	48401551	48401940	48401551	ID=MS.gene68472.t1.exon2;Parent=MS.gene68472.t1
chr3.2	CDS	48401551	48401940	48401551	ID=cds.MS.gene68472.t1;Parent=MS.gene68472.t1

Gene Sequence

>MS.gene68472

ATGCCAAGTGTTCAACAAAATCCATCCGACAAAGACTCAGAAACATTTGTTGAAACTGATCCAACCGGAAGATATGGAAGATACGATGAATTACTTGGAGCTGGTGCTTGTAAAAAAGTCTATAAAGCATTTGATAATGAAGAAGGAATAGAAGTAGCATGGAATCAAGTTAAGCTCAGAAATTTCAGCAATGATCCTGCAATGATTGAAAGACTTTACTCTGAAGTGAGACTGCTTAAAAACATGACAAACAAAAACATCATTGCACTTTACAGTGTTTGGAGAGACAAGGAGCATAACACACTGAATTTCATCACAGAGGTTTGTACAAGTGGGAATTTGAGGGAGTATAGGAAGAAACATAAGCATGTTTCTATTAAGGCTTTGAAGAAGTGGTCTAAGAAAATTTTGGAAGGGTTGAATTATTTACATGTGCATGATCCTTGTATCATTCATAGAGACCTCAACTGCAGTAATGTTTTTGTCAATGGAAATACTGGCCAGGTACATTATTTCTGTTTCATATTCTAATTTTCCATGTTGTTTATCTCAAGATGTCATTAGTACTAAATTATTTGTTTTAATGTATATTAGGTTAAGATTGGTGACTTAGGTTTGGCAGCAATTGTGGGAAAGAATCATTCAGCGCATTCAGTTCTAGGCACACCGGAATTTATGGCACCAGAGCTATATGAAGAGGATTACACAGAAATGGTAGACATATACTCATTTGGAATGTTAGTATTAGAGATGGTGACACTAGAGATTCCATATAGTGAATGTGACAATGTTGCAAAGATATACAAGAAGGTGACTTCAGGTGTGAGACCGCAATCCTTGAACAAGATAAAAGATGTAGAAGTGAAGACTTTCATCGAAAAGTGTCTCGCTCAACCAAGGGCTAGACCTTCTGCTGAGGAATTGCTAAAGGATCCTTTTTTTGATGATGTAGAGTACGATGAAAACGACGATGTTGATTACTAA

Protein sequence

>MS.gene68472.t1

MPSVQQNPSDKDSETFVETDPTGRYGRYDELLGAGACKKVYKAFDNEEGIEVAWNQVKLRNFSNDPAMIERLYSEVRLLKNMTNKNIIALYSVWRDKEHNTLNFITEVCTSGNLREYRKKHKHVSIKALKKWSKKILEGLNYLHVHDPCIIHRDLNCSNVFVNGNTGQVKIGDLGLAAIVGKNHSAHSVLGTPEFMAPELYEEDYTEMVDIYSFGMLVLEMVTLEIPYSECDNVAKIYKKVTSGVRPQSLNKIKDVEVKTFIEKCLAQPRARPSAEELLKDPFFDDVEYDENDDVDY