AlfalfaGEDB | MS.gene68485

M. sativa cultivar XinJiangDaYe / MS.gene68485

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68485.t1	XP_003600259.1	98.6	509	7	0	11	519	87	595	1.50E-290	1008.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68485.t1	Q93WV0	49.4	514	220	14	12	519	78	557	6.0e-110	399.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68485.t1	G7J209	98.6	509	7	0	11	519	87	595	1.1e-290	1008.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene68485.t1	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68485.t1	MTR_3g056100	98.625	509	7	0	11	519	87	595	0.0	1044
MS.gene68485.t1	MTR_3g056100	96.464	509	5	1	11	519	87	582	0.0	1010
MS.gene68485.t1	MTR_3g056100	98.448	451	7	0	69	519	1	451	0.0	926
MS.gene68485.t1	MTR_3g056100	96.009	451	5	1	69	519	1	438	0.0	892
MS.gene68485.t1	MTR_5g094430	66.602	515	129	7	11	519	68	545	0.0	670
MS.gene68485.t1	MTR_5g094430	67.544	456	112	5	70	519	8	433	0.0	610
MS.gene68485.t1	MTR_5g094430	67.347	441	108	5	85	519	1	411	0.0	588
MS.gene68485.t1	MTR_3g009470	41.886	456	190	14	11	413	136	569	2.25e-88	286
MS.gene68485.t1	MTR_7g011820	50.505	297	121	5	130	408	191	479	3.47e-88	281
MS.gene68485.t1	MTR_5g074400	57.085	247	93	4	164	401	240	482	8.10e-81	263

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68485.t1	AT4G26640	54.981	522	187	17	8	519	2	485	1.71e-164	475
MS.gene68485.t1	AT4G26640	55.212	518	184	17	12	519	38	517	6.05e-164	475
MS.gene68485.t1	AT4G26640	55.212	518	184	16	12	519	78	557	1.69e-163	475
MS.gene68485.t1	AT4G26640	61.893	391	122	11	138	519	9	381	9.47e-154	444
MS.gene68485.t1	AT4G26640	61.893	391	122	11	138	519	9	381	9.47e-154	444
MS.gene68485.t1	AT4G26640	61.893	391	122	11	138	519	9	381	9.47e-154	444
MS.gene68485.t1	AT4G26640	61.893	391	122	11	138	519	9	381	9.47e-154	444
MS.gene68485.t1	AT2G03340	54.800	250	98	6	162	407	245	483	1.78e-80	260
MS.gene68485.t1	AT5G56270	41.441	444	177	14	11	401	136	549	1.89e-79	262
MS.gene68485.t1	AT1G13960	48.299	294	132	6	116	398	31	315	5.71e-79	251

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Find 139 sgRNAs with CRISPR-Local

Find 470 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGACCAAACAGTCTA+GGG	0.516089	3.2:+48499260	MS.gene68485:CDS
AACATGGGAAGAATAATGAT+GGG	0.637504	3.2:+48499472	MS.gene68485:CDS
AAGTATCACAAGTTGATGGT+AGG	0.527382	3.2:+48495450	MS.gene68485:CDS
AATAACAGCGCAAATCCATA+TGG	0.500702	3.2:+48499388	MS.gene68485:CDS
AATTACTGAGATAGTTTATA+AGG	0.218011	3.2:+48495640	MS.gene68485:CDS
AATTCCAATTCGGTTGACGA+CGG	0.584594	3.2:+48494896	MS.gene68485:CDS
ACACCAAAGTATACCGGAGG+TGG	0.606893	3.2:-48499361	None:intergenic
ACACCACCTCCGGTATACTT+TGG	0.512830	3.2:+48499358	MS.gene68485:CDS
ACCATATTTGATCTACTGTG+CGG	0.651327	3.2:-48494944	None:intergenic
ACCGCACAGTAGATCAAATA+TGG	0.353137	3.2:+48494943	MS.gene68485:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATCACAAAGTCAGTAG+AGG	-	chr3.2:48496683-48496702	None:intergenic	30.0%
AAAATAGACCAAACAGTCTA+GGG	+	chr3.2:48499260-48499279	MS.gene68485:CDS	30.0%
AAATTTACTTCAATGCTCTC+AGG	+	chr3.2:48497464-48497483	MS.gene68485:intron	30.0%
AACATGGGAAGAATAATGAT+GGG	+	chr3.2:48499472-48499491	MS.gene68485:CDS	30.0%
ACAACACCGTTAAACAAAAA+AGG	-	chr3.2:48494072-48494091	None:intergenic	30.0%
ACACTAAATATGAATGTGCA+TGG	+	chr3.2:48498865-48498884	MS.gene68485:intron	30.0%
ACTATGAACAAACTTGAAAC+TGG	-	chr3.2:48499335-48499354	None:intergenic	30.0%
AGAGAAAGTCATATTCCAAT+AGG	-	chr3.2:48493975-48493994	None:intergenic	30.0%
AGTGTTGTCAGATCAAATAT+AGG	+	chr3.2:48498777-48498796	MS.gene68485:intron	30.0%
AGTTGTACTTCAATTCACTT+AGG	-	chr3.2:48493344-48493363	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	48493148	48499501	48493148	ID=MS.gene68485
chr3.2	mRNA	48493148	48499501	48493148	ID=MS.gene68485.t1;Parent=MS.gene68485
chr3.2	exon	48493148	48493151	48493148	ID=MS.gene68485.t1.exon1;Parent=MS.gene68485.t1
chr3.2	CDS	48493148	48493151	48493148	ID=cds.MS.gene68485.t1;Parent=MS.gene68485.t1
chr3.2	exon	48493246	48493271	48493246	ID=MS.gene68485.t1.exon2;Parent=MS.gene68485.t1
chr3.2	CDS	48493246	48493271	48493246	ID=cds.MS.gene68485.t1;Parent=MS.gene68485.t1
chr3.2	exon	48494788	48494964	48494788	ID=MS.gene68485.t1.exon3;Parent=MS.gene68485.t1
chr3.2	CDS	48494788	48494964	48494788	ID=cds.MS.gene68485.t1;Parent=MS.gene68485.t1
chr3.2	exon	48495218	48495770	48495218	ID=MS.gene68485.t1.exon4;Parent=MS.gene68485.t1
chr3.2	CDS	48495218	48495770	48495218	ID=cds.MS.gene68485.t1;Parent=MS.gene68485.t1
chr3.2	exon	48495870	48496035	48495870	ID=MS.gene68485.t1.exon5;Parent=MS.gene68485.t1
chr3.2	CDS	48495870	48496035	48495870	ID=cds.MS.gene68485.t1;Parent=MS.gene68485.t1
chr3.2	exon	48496123	48496272	48496123	ID=MS.gene68485.t1.exon6;Parent=MS.gene68485.t1
chr3.2	CDS	48496123	48496272	48496123	ID=cds.MS.gene68485.t1;Parent=MS.gene68485.t1
chr3.2	exon	48499018	48499501	48499018	ID=MS.gene68485.t1.exon7;Parent=MS.gene68485.t1
chr3.2	CDS	48499018	48499501	48499018	ID=cds.MS.gene68485.t1;Parent=MS.gene68485.t1

Gene Sequence

>MS.gene68485

ATGGGTAAGTTAATTTAATGTCAAAATGTGTTTTTTCAGTTGAATTTGGTTAAAAATTAAATGGGTAAGTGAATTTATTATCAAAATGTGTTTTTTAGTTGAATTTGATCAAAAAATTAAATGGGTAAGTTAATTTATTATCAAAATGTGTTTTTTTCAGTTGAATTTGGTCAAAAATGGTATTTTTACTTGACCTAAGTGAATTGAAGTACAACTAGTGTTGACATCCGCGCACAATAGCAGAGACTAATTGCAAAGACCAATTTTCTCGAGATAATTGAGATTCATTTAACAGTTTAGCTCCCGTAATAAATGTTTTTCCATACACATTAACCGATGGATTGAATCGTCGGTCAAATGGTTAAGGGTTCAAGTATCTACCATTTGTGCCGTTGGTGAAGTCCACCTAGTGTCAGTGGCATATAAAAAATTTGTTGTACTTTTCAGTGTGATTTTCATGCTGATGTTAACTATACAAACACAGCATATCCGGGGCATTATTCTGGTTCTGTTGGAATTAATGTTATTATTTTTTGGGGTCTTAATAATGATGTGAGTTAATTGTTGATGATGAGTTGGAGATGCTGTGTGTTTCATGAAAAGGTAGGAAATTGTTGTGAGAGTATATGTGCTTGTTTAATCTGGTGGCTAATATAATTTTGCTTATTTGTTTATTCTGTTTTATAATTGAAGTTGGTCCGTTATTGTGTTTGATCTTTTTCACCTGTTAGATTTTTTGTATGAGTGGTTTGTGTTGGTACAGTCAGATTCTGATGCTTGCATTTGTAGAATTCTATTTTTCAGCTTTATGCTCAATATGGTAACCTATTGGAATATGACTTTCTCTTATGATCGTTCAACTTTTTTAGTTTCAGTGTTGTTTTTTCACATAATAAATCTCCCTTTTGTGTTGATGCTTTTCCTTTTTTGTTTAACGGTGTTGTAGGGAGCACAGAAAATCCTTTTTTAACCTCCAATTTACACATGTGGAAAAAAAGAATAGATGCATCACCATGGATTAGTTAGTGGATTCCTTTTTTATTTCTGTATAACATGACATTAGAATAATATAAAGAATGTCAGAGATTCTGTGCCATGATATTTTTTCTTTGAAAGGACATGATTGTTTTGATGTTCATAGTTTGGGTGGTCCTAACCTAACTTGTGCAGTTCAGGATTCATGTGAGAATGGCTTTTCGGAGTTGTGTTTATATAAGTCCCGCATATCTAATATCTAGGAACCAAATAAGCATGTGATGTTATTGTGTGGAGAAAATTAACAACTTCGTTTATACTCAGTTGTAATTGCTCTTTCTGCATAGGTAGCTGATAAATCTGCTAATATTTCTGGTCAACTCAGATGATTTTGTATGTGGTTTTTTCATTCTGTTATTGCTATTAATTAGTCTGTCCATTATCCCTTGGCTTCTGTTTAGGCCATAGATTTTCCAGGTATCGTGGAAGTTGCTGTTATTTAGTCCATTTCTTTTTTCATTTCTTTCCAACTTGTTTCTATGAGTCAAGAGTTATAATCAAGAGCGATGAGAGGGTTTTATGAGCATTCATTTGATTCTACAATTGTTGCAGTAAGAGGGTTTTAGATTATATGATAGTCTAATATTTTTTCTTATCTCTTGCAGGTAGAACCTTCACCTACAACAGGCTCCCTTCCTAGGCTTCAACAAACAGTACATGGTTTTGTAACTTCTTCTACGTCCGCTGCGTTTCCTGTAACCTCTGCGTGCTTTAATTCCAATTCGGTTGACGACGGAAAATCCAGCTTCTTTGAATTCAAACCGCACAGTAGATCAAATATGGTAATGGACTTGAGTTTGATTTTTTCACCCTTCTTTAATTTTACCTGATAATGAACTGTGTACTGAGGTTATCAAGATAAGATGATTAATTGAAGTGTAATATTTTCACTGGTTCTTTTTCTTTTTTTGGGTGGCGTTGTAAAGTAAAAGTTGAAAACAGATTCGGTTGTCATGTACAATGTTCTGGCTAATATTGTTTTGAATATTACTCCTGGTTGCATAGTACTTACACAGTGCTCTTCACTTGTTTAAGGTTCCTGCTGACTTTTACAACCATGCATGTGAACAATCTACTCAAATAGACGGTCAAGGAAATGTTAAATCTTTTGTCTCGTCCCCATTGGTCAAAAGTGAAACGGCAGTCCCTTCAGATGAAATAAGTCTATCATCCTCACCTGTTCAAATGATTAGTTCAGGGGCTAGTGCTCATGTTGAAGTCGATTTGGACGAATCAAATCCCAGTGGCAGCAAAGCAACTGGGCTTCAAGTATCACAAGTTGATGGTAGGGGCAGTGGACTTTCAGTTGCTGCCGATAAGGCATCTGATGATGGATACAATTGGCGAAAATATGGGCAGAAGCTTGTTAAAGGATGTGAATTTCCACGCAGTTATTACAAATGCACACATCCTAACTGTGAAGTAAAGAAACTCTTCGAACGCTCTCATGACGGCCAAATTACTGAGATAGTTTATAAGGGAACACATGATCATCCTAAACCTCAACCAAGCCGTCGATTCTCTGGTGGAAATATGATGTCTGTGCAAGAAGAGAGGTCTGATAGGGCTTCTTTAACTAGCCGAGACGGTAATAGAAGATGAATACTTCTGATTGATTCCATTCTATAATTACTTAGTTCCAAGCAAATAATATGACTTTCTTTCTCTTTTAATTCTTGAATTGTAGACAAAGGCTTTAATAATTATGGTCAGGTGTCTCATGCAGCTGAGCGTGACAGTACTCCTGAGCTATCGCCTATAGCAGCAAATGATGGTAGTCCAGAGGGTGCAGGGTTTTTGTCAAACCAGAATAATGACGAGGTTGATGAAGATGATCCTTTCTCAAAGAGAAGGTTTGACGATTTAGGCCAAAGTTCTAGTTTTTAATTTTTTTGTTGCTTGTACACTTGCTGATCAAGAGGTTTTGTTTTATTAAGCAGAAAGATGGATCTTGACATCACACCGGTAGTTAAGCCTATCCGGGAGCCACGGGTCGTTGTACAAACTCTGAGTGAGGTTGACATATTGGATGATGGTTATCGCTGGCGTAAATATGGGCAGAAGGTGGTAAGAGGCAATCCTAACCCTAGGTATGTCCTCACATTGATGACTATACAATATAAACTAAATTGATGAAGTCCAACTTAATGTGCTTGTTTCGGATTATTTTACAACAAAAAAAAAAACCTTGATTTTTTAAAATGTACTTCTCACTTATTTGGGCTAATTTTTGAAAAAATTGGTTTATAGATTCAGGAATAGGGAAAAGAGTAGCAATAGCATCCTATAACATAATTTTGAAATGGATTTTATTCTAAACTGTAAATCTTAAGCCCATTGAATGTTTTATTAAAAGAATTACAATTCATTCAAAGGATTCTATTTGTCTCTTTTCTGACTCATCAGTTTGGAATAATTGCAAAGTCATGAGTTAGTTAGTGTAAGGCAATGTTTTGACCTGATAAGGTCACTGGTTCACTGGTCTCAGGGAGCAGTTCCTCTACTGACTTTGTGATTTTTGTTTTCAACTTAAAAAAAGGCAAGCGTTAGACAGCCCGGGTTGCAGAAACCCTCGGTTCACCGGTTTAGGCCTGTTCGTGCCGGTTTCCACCGGTTTAATTGCATGCCCGATCCAGTAACAAGACCGGACCGGTTACACATCCAGTTCCCGGTTCGACCGGTCTAGACACTTGTGTAAGTTGATGCCTGGGAAATCGATGTTGTATAGCAGTACACAAGTGATGATGGTAGATTGAAAAGGAACTAAAATAACTAATTACATCTAATGGTTTAGGAAGCAGTTTGAATGTAAGAACATCAGTGCTAAGAATATGCAAAGAAACACTGAAATAGTTGGAAATCAAATGAATTAGTAAAAGTTTGATCCTATGAAATGGATGCTGTAGACCAGTGTAGAATTGGCATTGAGAGATGATGATGGTAGGTTCAAATGGATCTGTTATAATTAAATACATATTGGTTAAGGGAGCAGTTCGAATGTTAGAGCATCACCACTGAGAAAGTATGAGTAGGGATGGCAATGGCCATGGGTATCATCTGGCACAGATAGTAAATATCCGATACCCACCCTGTTGATAAAATTGATAGACGTGCCCCGCCCATATATGTGCGCATATCTGCTAGATGGGTATTTAGCAGATTCTGAGGTGTCGGCGGGTAGTTGCAGATATCCAGGGATATCAATTTTATTAAAAAAAATGCATTTAAAAATAGTGCAGTACCGTTAGATACTTAAATATCAAGAAAGTGTTGAGGAATGCAAATTTACTTCAATGCTCTCAGGAGAAAATACGTCCAACAACATAATGATGGTTATGTGCCATAGGTTAACAGTGAGTTATAAGGCATTTTAGGGGAAAGGAAGGGCAATAAGATATTTAGGGTGTGTTTGTGTTGTGAGTTGGTTTTTGGAGTGCTAAGTCTATATTTTGATATACATTTAATATTTTAAAAAAACTAAAATAACATGATATAATATGCTTGTGTCTCATGCTGCTCTTTCAATTTTTTTAAAATATCAAATATATATTAAAATATAGACTTAGCCCTCCAAAGTGTTCCCCTCAAAAACCCTCCAAAATCCAACTTGCAAATACACCCTTACTGATTTGCATGATTGAAGTGTTTGTACTGATTATTATGACTGTGGGACAATAGGACTTATCGATGTGGTAAGTTTGTTTCATCTTTCACCGATTGTCATCCCGTAAGCCAAATATTGTAGTTCTTCTCAAGGTCTAAAACATTGAAAGTTGAAACTGAATCTTAGCTGGAGTTGTCTTTTTTTCTTCTTATTCTGGAAACCTGCATTCCTTATAAGTATGTGACCCACTTTGCACTTGAGGATTCCTCGTTAGTATTCAGTTCCAGTTGCTGACTCGAAATTACGACACACGGACAAAATTTCAACTTAAGAAAATTTTCATTTTTTAGCTTAAAATGGTTGCCATGCAGTTTGTTTATAAAAACTCAATATTGTTTGATCTAATTTTATATTCCACAAGGCTACAAACCATAAAGATTGAATTGGGTTTTTTTGTCAGAAATTGTACTTCTTGGTGATCTAATAGTTTTGATTTGTGAGAGGCTTTGCAAGAATTTTCGGTATTGTTTTGAACCTTGGTTGATCACTTTTTTTAAAGACCTTTGTCATGCTATTATAATTTTTCAGAAATGCATGTATCTTTCAAATATTTCATTAAATAGTTTAAACAATATGCAAGTATGCGTCTAGCTCAGAATCTCGTTGAATAGGAAGGGGAATTGCTACCTTGTAAATTCCTTGTCATAAGCTCGTATTGACTAAACTATTGAAGAGTAAGACTACTGTCTAGTTGAACTTTATTCAGGCACTAAAATTGTTTTTCTTTCTCTTAACCCAATGATTGTTGTAGTTGACCCCAATTTTACCACTAAGGCTTGTTTTTTGTCATTTTCCAAATTCATTGGGCACTTAGGCCGAAGTAGCAATAAAGTGAACTATTCTAAACTAGGTTAGTTTTGGTGCAGTGGTTGTGGTGGGAGTCATCTTTAAAATAACAGATGGAATGATGGATACTATATAGTGTAACTCAGTGTTGTCAGATCAAATATAGGCTGTAGCAACACTGCAGCGAAGTGGAATTTAAGAAACCATTAATTTCCATAATCTGCTATTGACAACACTAAATATGAATGTGCATGGAATGTAAATAAAATATGTGTACTTAGACCTTGATGAGCTTGGGAGATTTGTCTATGAACTGTTTTGTATTTGATAAAAAGAATGTGGTGTTTTGTTGCTTATTTTTGGGTAACATTGCTGCTTATCACAGGAGTTATTACAAATGCACAAATGCCGGTTGTCCGGTTAGAAAACACGTGGAGAGGGCATCACATGATCCGAAAGCTGTAATAACAACATACGAGGGTAAACACAATCATGATGTACCAACTGCGAGGCATAATAGTCATGACATGGCAGGACCATCAGCTGCAGGTGGACATACAAGAATCCGGCAAGAAGAAAGTGATACTATTAGCCTTGACCTTGGAATGGGCCTCAGCCCAACCGCTGAAAATAGACCAAACAGTCTAGGGAGAATGATGCGCAATGAATATGGCGACAGTCAAACACATAACGGCAATTCCAGTTTCAAGTTTGTTCATAGTTCTACACCACCTCCGGTATACTTTGGTGTACTAAATAACAGCGCAAATCCATATGGTTCTAGAGAAAATCCGAGTGATAGTTCATCTTTAAACCGTTCTGCATATCCTTGCCCACAGAACATGGGAAGAATAATGATGGGTCCCTAA

Protein sequence

>MS.gene68485.t1

MVEFDQKIKWVEPSPTTGSLPRLQQTVHGFVTSSTSAAFPVTSACFNSNSVDDGKSSFFEFKPHSRSNMVPADFYNHACEQSTQIDGQGNVKSFVSSPLVKSETAVPSDEISLSSSPVQMISSGASAHVEVDLDESNPSGSKATGLQVSQVDGRGSGLSVAADKASDDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSHDGQITEIVYKGTHDHPKPQPSRRFSGGNMMSVQEERSDRASLTSRDDKGFNNYGQVSHAAERDSTPELSPIAANDGSPEGAGFLSNQNNDEVDEDDPFSKRRKMDLDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARHNSHDMAGPSAAGGHTRIRQEESDTISLDLGMGLSPTAENRPNSLGRMMRNEYGDSQTHNGNSSFKFVHSSTPPPVYFGVLNNSANPYGSRENPSDSSSLNRSAYPCPQNMGRIMMGP