Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68539.t1 | XP_024625222.1 | 86.8 | 129 | 17 | 0 | 360 | 488 | 1 | 129 | 2.70E-55 | 226.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68539.t1 | Q9C5H5 | 74.4 | 43 | 11 | 0 | 256 | 298 | 448 | 490 | 1.0e-10 | 69.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68539.t1 | G7KS37 | 86.8 | 129 | 17 | 0 | 360 | 488 | 1 | 129 | 2.0e-55 | 226.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68539.t1 | MTR_6g453220 | 65.455 | 220 | 56 | 2 | 122 | 326 | 33 | 247 | 2.29e-85 | 272 |
| MS.gene68539.t1 | MTR_1g107015 | 83.673 | 147 | 24 | 0 | 44 | 190 | 1 | 147 | 1.21e-72 | 246 |
| MS.gene68539.t1 | MTR_7g037650 | 86.822 | 129 | 17 | 0 | 360 | 488 | 1 | 129 | 9.67e-71 | 234 |
| MS.gene68539.t1 | MTR_1g107015 | 81.633 | 147 | 27 | 0 | 44 | 190 | 76 | 222 | 1.73e-70 | 241 |
| MS.gene68539.t1 | MTR_1g107015 | 81.967 | 122 | 22 | 0 | 69 | 190 | 1 | 122 | 6.31e-56 | 200 |
| MS.gene68539.t1 | MTR_6g453210 | 62.195 | 82 | 9 | 1 | 2 | 83 | 53 | 112 | 1.75e-23 | 95.5 |
| MS.gene68539.t1 | MTR_5g030600 | 85.106 | 47 | 7 | 0 | 442 | 488 | 431 | 477 | 5.62e-19 | 90.5 |
| MS.gene68539.t1 | MTR_8g005980 | 80.435 | 46 | 9 | 0 | 383 | 428 | 97 | 142 | 2.28e-14 | 75.5 |
| MS.gene68539.t1 | MTR_5g017890 | 81.395 | 43 | 8 | 0 | 256 | 298 | 474 | 516 | 2.81e-14 | 75.9 |
| MS.gene68539.t1 | MTR_3g101210 | 74.419 | 43 | 11 | 0 | 256 | 298 | 409 | 451 | 6.79e-13 | 71.6 |
| MS.gene68539.t1 | MTR_3g101210 | 74.419 | 43 | 11 | 0 | 256 | 298 | 409 | 451 | 7.13e-13 | 71.2 |
| MS.gene68539.t1 | MTR_3g073260 | 39.091 | 110 | 59 | 4 | 224 | 333 | 26 | 127 | 1.25e-11 | 63.2 |
| MS.gene68539.t1 | MTR_8g098425 | 46.377 | 69 | 28 | 1 | 251 | 319 | 504 | 563 | 1.96e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68539.t1 | AT5G66850 | 74.419 | 43 | 11 | 0 | 256 | 298 | 448 | 490 | 3.94e-13 | 72.4 |
| MS.gene68539.t1 | AT5G66850 | 74.419 | 43 | 11 | 0 | 256 | 298 | 448 | 490 | 4.21e-13 | 72.0 |
| MS.gene68539.t1 | AT1G04410 | 69.565 | 46 | 14 | 0 | 383 | 428 | 15 | 60 | 2.14e-11 | 65.5 |
| MS.gene68539.t1 | AT1G53570 | 60.465 | 43 | 17 | 0 | 256 | 298 | 315 | 357 | 7.26e-11 | 65.1 |
| MS.gene68539.t1 | AT1G53570 | 60.465 | 43 | 17 | 0 | 256 | 298 | 315 | 357 | 7.32e-11 | 65.1 |
| MS.gene68539.t1 | AT1G53570 | 60.465 | 43 | 17 | 0 | 256 | 298 | 315 | 357 | 7.32e-11 | 65.1 |
| MS.gene68539.t1 | AT1G53570 | 60.465 | 43 | 17 | 0 | 256 | 298 | 315 | 357 | 7.33e-11 | 65.1 |
| MS.gene68539.t1 | AT1G53570 | 60.465 | 43 | 17 | 0 | 256 | 298 | 315 | 357 | 7.66e-11 | 64.7 |
| MS.gene68539.t1 | AT1G53570 | 60.465 | 43 | 17 | 0 | 256 | 298 | 315 | 357 | 7.72e-11 | 64.7 |
Find 83 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATCCGTCTTGCAATTAT+TGG | 0.152073 | 3.4:+54379486 | None:intergenic |
| ACCTGTCTCCACATTTAATT+TGG | 0.167081 | 3.4:+54380081 | None:intergenic |
| AAGTTATCTGTTGCTCCTTT+TGG | 0.216449 | 3.4:-54379318 | MS.gene68539:CDS |
| CCGGTCTATTGCTGCAAGTT+TGG | 0.267386 | 3.4:+54380117 | None:intergenic |
| AACTTGCTTGTTGATTCTTC+TGG | 0.276782 | 3.4:-54379899 | MS.gene68539:CDS |
| GAGCTATTGGATCCACCTTT+TGG | 0.281548 | 3.4:-54380316 | MS.gene68539:CDS |
| CAGAATTCGTTGTTCGGAAT+TGG | 0.297283 | 3.4:-54380186 | MS.gene68539:CDS |
| TTCTCAGTCGTAAAGTTGTT+AGG | 0.314549 | 3.4:+54380592 | None:intergenic |
| AAATTCTGTGAATGAGCTAT+TGG | 0.322862 | 3.4:-54380329 | MS.gene68539:CDS |
| ATTAGTTCTCAAAACGAATA+TGG | 0.331577 | 3.4:-54380277 | MS.gene68539:CDS |
| TGATATTGAACCAGCATTAG+AGG | 0.332040 | 3.4:-54379427 | MS.gene68539:CDS |
| AGCTCCATCTTCACCCCTTT+AGG | 0.339946 | 3.4:+54379402 | None:intergenic |
| CCACTTGATGTTAATATTGC+TGG | 0.359423 | 3.4:-54380679 | MS.gene68539:CDS |
| GAATTTGAGTTCACTTGAAC+AGG | 0.365563 | 3.4:+54380346 | None:intergenic |
| TTTAATGTTGAAAATATGAA+TGG | 0.383830 | 3.4:-54379243 | MS.gene68539:CDS |
| TTTCCTGTTGAACTAATCAT+TGG | 0.384379 | 3.4:+54380625 | None:intergenic |
| TCTCCAACATCAGATTTCTT+AGG | 0.387740 | 3.4:+54379999 | None:intergenic |
| GAGCAGGAACAAACTGTGTT+TGG | 0.396713 | 3.4:+54380218 | None:intergenic |
| AGAATATACGTTATCAAAAC+AGG | 0.413319 | 3.4:+54380727 | None:intergenic |
| TAGTGGGTTGAGCTCATGTT+TGG | 0.414608 | 3.4:-54379682 | MS.gene68539:CDS |
| TGTACTACCAAAGGACATAT+TGG | 0.418272 | 3.4:-54379522 | MS.gene68539:CDS |
| AAACCAATGATTAGTTCAAC+AGG | 0.420450 | 3.4:-54380628 | MS.gene68539:CDS |
| GAAACGAGTGATGCAGTTAC+TGG | 0.424624 | 3.4:-54380253 | MS.gene68539:CDS |
| CCTTTAGGTGCCTCTAATGC+TGG | 0.426853 | 3.4:+54379417 | None:intergenic |
| GAGTTCACTTGAACAGGAAT+GGG | 0.435056 | 3.4:+54380352 | None:intergenic |
| TCTCAGTCGTAAAGTTGTTA+GGG | 0.435210 | 3.4:+54380593 | None:intergenic |
| CAGCATTAGAGGCACCTAAA+GGG | 0.454237 | 3.4:-54379416 | MS.gene68539:CDS |
| TGAGTTCACTTGAACAGGAA+TGG | 0.455749 | 3.4:+54380351 | None:intergenic |
| GGAAGAAAATAGTCTGTTGA+AGG | 0.463937 | 3.4:+54379273 | None:intergenic |
| TGGACGACATCAAGTGGTTT+CGG | 0.466827 | 3.4:+54379573 | None:intergenic |
| GTTTCGGTGGCAGTGCAATC+AGG | 0.466903 | 3.4:+54379589 | None:intergenic |
| TGATAACAGAATTCGTTGTT+CGG | 0.471158 | 3.4:-54380192 | MS.gene68539:CDS |
| TACATCACCAATATGTCCTT+TGG | 0.474400 | 3.4:+54379515 | None:intergenic |
| GATGTTGATGTTGTGGCAGC+TGG | 0.480190 | 3.4:-54379375 | MS.gene68539:CDS |
| ATTTGGCATTCAGTCTCATC+CGG | 0.480305 | 3.4:+54380098 | None:intergenic |
| CTCACTTAAGCATTGCAGAA+TGG | 0.480948 | 3.4:+54379641 | None:intergenic |
| CAATTCACAGAGATATCAAT+GGG | 0.481242 | 3.4:-54379925 | MS.gene68539:CDS |
| CGATCCCAGCAGGTTTCTAG+TGG | 0.489994 | 3.4:-54379699 | MS.gene68539:CDS |
| ATTGCAAGACGGATGATGTT+GGG | 0.490662 | 3.4:-54379480 | MS.gene68539:CDS |
| GCCAAATTAAATGTGGAGAC+AGG | 0.496480 | 3.4:-54380082 | MS.gene68539:CDS |
| GGCACCTAAAGGGGTGAAGA+TGG | 0.498260 | 3.4:-54379406 | MS.gene68539:CDS |
| AATTCTGTTATCACTTGAGC+AGG | 0.498446 | 3.4:+54380202 | None:intergenic |
| ATCAGGTGATTAGATGAGAA+TGG | 0.504770 | 3.4:+54379606 | None:intergenic |
| GAGAAAGCACAAAGTGTGCT+TGG | 0.505951 | 3.4:-54380508 | MS.gene68539:CDS |
| TTCGTTGTTCGGAATTGGCT+AGG | 0.507654 | 3.4:-54380181 | MS.gene68539:CDS |
| CCAAACTTGCAGCAATAGAC+CGG | 0.513055 | 3.4:-54380117 | MS.gene68539:CDS |
| TCAACCCACTAGAAACCTGC+TGG | 0.517549 | 3.4:+54379694 | None:intergenic |
| ACAATTCACAGAGATATCAA+TGG | 0.522049 | 3.4:-54379926 | MS.gene68539:CDS |
| GTTGATTTCTCAAATCCAAA+AGG | 0.523015 | 3.4:+54379303 | None:intergenic |
| AATTGCAAGACGGATGATGT+TGG | 0.527933 | 3.4:-54379481 | MS.gene68539:CDS |
| AACTTTACGACTGAGAAGAT+AGG | 0.527969 | 3.4:-54380586 | MS.gene68539:CDS |
| CCAGCATTAGAGGCACCTAA+AGG | 0.536492 | 3.4:-54379417 | MS.gene68539:CDS |
| ACTTGAACAGGAATGGGTTG+TGG | 0.539413 | 3.4:+54380358 | None:intergenic |
| GCAAAGTTGCGTTACTGTAG+CGG | 0.541574 | 3.4:-54379209 | None:intergenic |
| AATTATGTTATTCAACTGCA+TGG | 0.547088 | 3.4:-54380421 | MS.gene68539:CDS |
| TTCGCAACATCTCCAAAAGG+TGG | 0.549066 | 3.4:+54380304 | None:intergenic |
| TCAGATGTTACGATCCCAGC+AGG | 0.550171 | 3.4:-54379709 | MS.gene68539:CDS |
| GCATTGCAGAATGGAGGGAG+AGG | 0.558726 | 3.4:+54379650 | None:intergenic |
| GCTAATTGATGTTGATGTTG+TGG | 0.572556 | 3.4:-54379382 | MS.gene68539:CDS |
| CCAGCAATATTAACATCAAG+TGG | 0.575799 | 3.4:+54380679 | None:intergenic |
| CAAGTCTGCTAATATTGAGA+TGG | 0.580192 | 3.4:-54379343 | MS.gene68539:CDS |
| CTTAAGCATTGCAGAATGGA+GGG | 0.584117 | 3.4:+54379645 | None:intergenic |
| TCAATGAGTGCGTTGTATCG+TGG | 0.587681 | 3.4:-54380034 | MS.gene68539:CDS |
| GCGCCTAAGAAATCTGATGT+TGG | 0.590176 | 3.4:-54380002 | MS.gene68539:CDS |
| CCTTTGGTAGTACATGAGAA+AGG | 0.591354 | 3.4:+54379531 | None:intergenic |
| ACTTAAGCATTGCAGAATGG+AGG | 0.594485 | 3.4:+54379644 | None:intergenic |
| TGGATTTGAGAAATCAACAC+GGG | 0.600501 | 3.4:-54379298 | MS.gene68539:CDS |
| AGTTTGGAAACAAGCAACAA+TGG | 0.608653 | 3.4:+54380133 | None:intergenic |
| CCTTTCTCATGTACTACCAA+AGG | 0.610380 | 3.4:-54379531 | MS.gene68539:CDS |
| ACTGAATGCCAAATTAAATG+TGG | 0.610766 | 3.4:-54380089 | MS.gene68539:CDS |
| AGCATTAGAGGCACCTAAAG+GGG | 0.613235 | 3.4:-54379415 | MS.gene68539:CDS |
| GATCCCAGCAGGTTTCTAGT+GGG | 0.613283 | 3.4:-54379698 | MS.gene68539:CDS |
| ACTGTGTTTGGTCTTCAACA+AGG | 0.625784 | 3.4:+54380230 | None:intergenic |
| GCAGATTGAGTGACGATGTG+TGG | 0.630928 | 3.4:+54379553 | None:intergenic |
| ACAAAGTGTGCTTGGTACTG+TGG | 0.650062 | 3.4:-54380500 | MS.gene68539:CDS |
| CAACCCACTAGAAACCTGCT+GGG | 0.660998 | 3.4:+54379695 | None:intergenic |
| CATTCTGCAATGCTTAAGTG+AGG | 0.671779 | 3.4:-54379640 | MS.gene68539:CDS |
| TTGCTCCAATAATTGCAAGA+CGG | 0.676531 | 3.4:-54379491 | MS.gene68539:CDS |
| ACGACATCAAGTGGTTTCGG+TGG | 0.687869 | 3.4:+54379576 | None:intergenic |
| AGACAGGTTTGAAAACAAAG+TGG | 0.699478 | 3.4:-54380066 | MS.gene68539:CDS |
| GATGTGTGGACGACATCAAG+TGG | 0.711096 | 3.4:+54379567 | None:intergenic |
| TTGGATTTGAGAAATCAACA+CGG | 0.732765 | 3.4:-54379299 | MS.gene68539:CDS |
| AATTCACAGAGATATCAATG+GGG | 0.809964 | 3.4:-54379924 | MS.gene68539:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATGTTGAAAATATGAA+TGG | - | chr3.4:54380720-54380739 | MS.gene68539:CDS | 15.0% |
| !!! | TTTTCAACATTAAAATTTTC+TGG | + | chr3.4:54380714-54380733 | None:intergenic | 15.0% |
| !! | TGAAAAATCAAATCATGTTT+CGG | - | chr3.4:54379505-54379524 | MS.gene68539:CDS | 20.0% |
| !!! | TTTTGATAACGTATATTCTA+AGG | - | chr3.4:54379240-54379259 | MS.gene68539:CDS | 20.0% |
| !!! | TTTTTCATTGATAACAGAAT+CGG | + | chr3.4:54379492-54379511 | None:intergenic | 20.0% |
| ! | AATTATGTTATTCAACTGCA+TGG | - | chr3.4:54379542-54379561 | MS.gene68539:CDS | 25.0% |
| ! | AGAATATACGTTATCAAAAC+AGG | + | chr3.4:54379239-54379258 | None:intergenic | 25.0% |
| ! | TAGTATATCAATGCAATTGA+TGG | + | chr3.4:54380152-54380171 | None:intergenic | 25.0% |
| !! | ATTAGTTCTCAAAACGAATA+TGG | - | chr3.4:54379686-54379705 | MS.gene68539:CDS | 25.0% |
| !! | TCACAAGACAATTTCTTTTA+GGG | - | chr3.4:54379990-54380009 | MS.gene68539:CDS | 25.0% |
| !! | TTCACAAGACAATTTCTTTT+AGG | - | chr3.4:54379989-54380008 | MS.gene68539:CDS | 25.0% |
| AAATTCTGTGAATGAGCTAT+TGG | - | chr3.4:54379634-54379653 | MS.gene68539:CDS | 30.0% | |
| AATTCACAGAGATATCAATG+GGG | - | chr3.4:54380039-54380058 | MS.gene68539:CDS | 30.0% | |
| ACAATTCACAGAGATATCAA+TGG | - | chr3.4:54380037-54380056 | MS.gene68539:CDS | 30.0% | |
| ACTGAATGCCAAATTAAATG+TGG | - | chr3.4:54379874-54379893 | MS.gene68539:CDS | 30.0% | |
| CAATTCACAGAGATATCAAT+GGG | - | chr3.4:54380038-54380057 | MS.gene68539:CDS | 30.0% | |
| TGATAACAGAATTCGTTGTT+CGG | - | chr3.4:54379771-54379790 | MS.gene68539:intron | 30.0% | |
| TTGGATTTGAGAAATCAACA+CGG | - | chr3.4:54380664-54380683 | MS.gene68539:CDS | 30.0% | |
| TTTCCTGTTGAACTAATCAT+TGG | + | chr3.4:54379341-54379360 | None:intergenic | 30.0% | |
| ! | AAACCAATGATTAGTTCAAC+AGG | - | chr3.4:54379335-54379354 | MS.gene68539:CDS | 30.0% |
| ! | GTTGATTTCTCAAATCCAAA+AGG | + | chr3.4:54380663-54380682 | None:intergenic | 30.0% |
| !!! | AAGACAATTTCTTTTAGGGT+TGG | - | chr3.4:54379994-54380013 | MS.gene68539:CDS | 30.0% |
| AACTTTACGACTGAGAAGAT+AGG | - | chr3.4:54379377-54379396 | MS.gene68539:CDS | 35.0% | |
| AATTCTGTTATCACTTGAGC+AGG | + | chr3.4:54379764-54379783 | None:intergenic | 35.0% | |
| ACCTGTCTCCACATTTAATT+TGG | + | chr3.4:54379885-54379904 | None:intergenic | 35.0% | |
| AGACAGGTTTGAAAACAAAG+TGG | - | chr3.4:54379897-54379916 | MS.gene68539:CDS | 35.0% | |
| AGTTTGGAAACAAGCAACAA+TGG | + | chr3.4:54379833-54379852 | None:intergenic | 35.0% | |
| ATCAGGTGATTAGATGAGAA+TGG | + | chr3.4:54380360-54380379 | None:intergenic | 35.0% | |
| ATCATCCGTCTTGCAATTAT+TGG | + | chr3.4:54380480-54380499 | None:intergenic | 35.0% | |
| ATCTTGATTGTGCAAGCATA+TGG | + | chr3.4:54380216-54380235 | None:intergenic | 35.0% | |
| CAAGTCTGCTAATATTGAGA+TGG | - | chr3.4:54380620-54380639 | MS.gene68539:CDS | 35.0% | |
| CCACTTGATGTTAATATTGC+TGG | - | chr3.4:54379284-54379303 | MS.gene68539:CDS | 35.0% | |
| CCAGCAATATTAACATCAAG+TGG | + | chr3.4:54379287-54379306 | None:intergenic | 35.0% | |
| GCTAATTGATGTTGATGTTG+TGG | - | chr3.4:54380581-54380600 | MS.gene68539:CDS | 35.0% | |
| GGAAGAAAATAGTCTGTTGA+AGG | + | chr3.4:54380693-54380712 | None:intergenic | 35.0% | |
| TACATCACCAATATGTCCTT+TGG | + | chr3.4:54380451-54380470 | None:intergenic | 35.0% | |
| TCTCAGTCGTAAAGTTGTTA+GGG | + | chr3.4:54379373-54379392 | None:intergenic | 35.0% | |
| TCTCCAACATCAGATTTCTT+AGG | + | chr3.4:54379967-54379986 | None:intergenic | 35.0% | |
| TGAGTAGCTTTCTCCAAAAA+TGG | + | chr3.4:54380109-54380128 | None:intergenic | 35.0% | |
| TGATATTGAACCAGCATTAG+AGG | - | chr3.4:54380536-54380555 | MS.gene68539:CDS | 35.0% | |
| TGGATTTGAGAAATCAACAC+GGG | - | chr3.4:54380665-54380684 | MS.gene68539:CDS | 35.0% | |
| TGTACTACCAAAGGACATAT+TGG | - | chr3.4:54380441-54380460 | MS.gene68539:CDS | 35.0% | |
| TTCTCAGTCGTAAAGTTGTT+AGG | + | chr3.4:54379374-54379393 | None:intergenic | 35.0% | |
| TTGCTCCAATAATTGCAAGA+CGG | - | chr3.4:54380472-54380491 | MS.gene68539:CDS | 35.0% | |
| ! | AAGTTATCTGTTGCTCCTTT+TGG | - | chr3.4:54380645-54380664 | MS.gene68539:CDS | 35.0% |
| ! | GAATTTGAGTTCACTTGAAC+AGG | + | chr3.4:54379620-54379639 | None:intergenic | 35.0% |
| ! | TTTTTCGCAACATCTCCAAA+AGG | + | chr3.4:54379665-54379684 | None:intergenic | 35.0% |
| !! | AACTTGCTTGTTGATTCTTC+TGG | - | chr3.4:54380064-54380083 | MS.gene68539:CDS | 35.0% |
| !! | TTTTGGAGAAAGCTACTCAA+TGG | - | chr3.4:54380110-54380129 | MS.gene68539:CDS | 35.0% |
| !!! | TAAGCTTGCTGAACCATTTT+TGG | - | chr3.4:54380093-54380112 | MS.gene68539:CDS | 35.0% |
| AATTGCAAGACGGATGATGT+TGG | - | chr3.4:54380482-54380501 | MS.gene68539:CDS | 40.0% | |
| ATTGCAAGACGGATGATGTT+GGG | - | chr3.4:54380483-54380502 | MS.gene68539:CDS | 40.0% | |
| ATTTGGCATTCAGTCTCATC+CGG | + | chr3.4:54379868-54379887 | None:intergenic | 40.0% | |
| CAGAATTCGTTGTTCGGAAT+TGG | - | chr3.4:54379777-54379796 | MS.gene68539:intron | 40.0% | |
| CATTCTGCAATGCTTAAGTG+AGG | - | chr3.4:54380323-54380342 | MS.gene68539:CDS | 40.0% | |
| CCTTTCTCATGTACTACCAA+AGG | - | chr3.4:54380432-54380451 | MS.gene68539:CDS | 40.0% | |
| GAGTTCACTTGAACAGGAAT+GGG | + | chr3.4:54379614-54379633 | None:intergenic | 40.0% | |
| GCCAAATTAAATGTGGAGAC+AGG | - | chr3.4:54379881-54379900 | MS.gene68539:CDS | 40.0% | |
| TGAGTTCACTTGAACAGGAA+TGG | + | chr3.4:54379615-54379634 | None:intergenic | 40.0% | |
| ! | ACTGTGTTTGGTCTTCAACA+AGG | + | chr3.4:54379736-54379755 | None:intergenic | 40.0% |
| ! | ACTTAAGCATTGCAGAATGG+AGG | + | chr3.4:54380322-54380341 | None:intergenic | 40.0% |
| ! | CCTTTGGTAGTACATGAGAA+AGG | + | chr3.4:54380435-54380454 | None:intergenic | 40.0% |
| ! | CTCACTTAAGCATTGCAGAA+TGG | + | chr3.4:54380325-54380344 | None:intergenic | 40.0% |
| ! | CTTAAGCATTGCAGAATGGA+GGG | + | chr3.4:54380321-54380340 | None:intergenic | 40.0% |
| ACAAAGTGTGCTTGGTACTG+TGG | - | chr3.4:54379463-54379482 | MS.gene68539:CDS | 45.0% | |
| CCAAACTTGCAGCAATAGAC+CGG | - | chr3.4:54379846-54379865 | MS.gene68539:intron | 45.0% | |
| GAAACGAGTGATGCAGTTAC+TGG | - | chr3.4:54379710-54379729 | MS.gene68539:CDS | 45.0% | |
| GAGCAGGAACAAACTGTGTT+TGG | + | chr3.4:54379748-54379767 | None:intergenic | 45.0% | |
| GCGCCTAAGAAATCTGATGT+TGG | - | chr3.4:54379961-54379980 | MS.gene68539:CDS | 45.0% | |
| TCAATGAGTGCGTTGTATCG+TGG | - | chr3.4:54379929-54379948 | MS.gene68539:CDS | 45.0% | |
| TGGACGACATCAAGTGGTTT+CGG | + | chr3.4:54380393-54380412 | None:intergenic | 45.0% | |
| TTCGCAACATCTCCAAAAGG+TGG | + | chr3.4:54379662-54379681 | None:intergenic | 45.0% | |
| TTCGTTGTTCGGAATTGGCT+AGG | - | chr3.4:54379782-54379801 | MS.gene68539:intron | 45.0% | |
| ! | GAGAAAGCACAAAGTGTGCT+TGG | - | chr3.4:54379455-54379474 | MS.gene68539:CDS | 45.0% |
| ! | GAGCTATTGGATCCACCTTT+TGG | - | chr3.4:54379647-54379666 | MS.gene68539:CDS | 45.0% |
| !! | ACTTGAACAGGAATGGGTTG+TGG | + | chr3.4:54379608-54379627 | None:intergenic | 45.0% |
| !! | AGCATTAGAGGCACCTAAAG+GGG | - | chr3.4:54380548-54380567 | MS.gene68539:CDS | 45.0% |
| !! | CAGCATTAGAGGCACCTAAA+GGG | - | chr3.4:54380547-54380566 | MS.gene68539:CDS | 45.0% |
| !! | TAGTGGGTTGAGCTCATGTT+TGG | - | chr3.4:54380281-54380300 | MS.gene68539:CDS | 45.0% |
| ACGACATCAAGTGGTTTCGG+TGG | + | chr3.4:54380390-54380409 | None:intergenic | 50.0% | |
| AGCTCCATCTTCACCCCTTT+AGG | + | chr3.4:54380564-54380583 | None:intergenic | 50.0% | |
| CAACCCACTAGAAACCTGCT+GGG | + | chr3.4:54380271-54380290 | None:intergenic | 50.0% | |
| CCGGTCTATTGCTGCAAGTT+TGG | + | chr3.4:54379849-54379868 | None:intergenic | 50.0% | |
| CCTTTAGGTGCCTCTAATGC+TGG | + | chr3.4:54380549-54380568 | None:intergenic | 50.0% | |
| GATGTGTGGACGACATCAAG+TGG | + | chr3.4:54380399-54380418 | None:intergenic | 50.0% | |
| GATGTTGATGTTGTGGCAGC+TGG | - | chr3.4:54380588-54380607 | MS.gene68539:CDS | 50.0% | |
| GCAGATTGAGTGACGATGTG+TGG | + | chr3.4:54380413-54380432 | None:intergenic | 50.0% | |
| TCAACCCACTAGAAACCTGC+TGG | + | chr3.4:54380272-54380291 | None:intergenic | 50.0% | |
| TCAGATGTTACGATCCCAGC+AGG | - | chr3.4:54380254-54380273 | MS.gene68539:CDS | 50.0% | |
| !! | CCAGCATTAGAGGCACCTAA+AGG | - | chr3.4:54380546-54380565 | MS.gene68539:CDS | 50.0% |
| !! | GATCCCAGCAGGTTTCTAGT+GGG | - | chr3.4:54380265-54380284 | MS.gene68539:CDS | 50.0% |
| GCATTGCAGAATGGAGGGAG+AGG | + | chr3.4:54380316-54380335 | None:intergenic | 55.0% | |
| GGCACCTAAAGGGGTGAAGA+TGG | - | chr3.4:54380557-54380576 | MS.gene68539:CDS | 55.0% | |
| GTTTCGGTGGCAGTGCAATC+AGG | + | chr3.4:54380377-54380396 | None:intergenic | 55.0% | |
| ! | CGATCCCAGCAGGTTTCTAG+TGG | - | chr3.4:54380264-54380283 | MS.gene68539:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 54379212 | 54380773 | 54379212 | ID=MS.gene68539 |
| chr3.4 | mRNA | 54379212 | 54380773 | 54379212 | ID=MS.gene68539.t1;Parent=MS.gene68539 |
| chr3.4 | exon | 54379847 | 54380773 | 54379847 | ID=MS.gene68539.t1.exon1;Parent=MS.gene68539.t1 |
| chr3.4 | CDS | 54379847 | 54380773 | 54379847 | ID=cds.MS.gene68539.t1;Parent=MS.gene68539.t1 |
| chr3.4 | exon | 54379212 | 54379751 | 54379212 | ID=MS.gene68539.t1.exon2;Parent=MS.gene68539.t1 |
| chr3.4 | CDS | 54379212 | 54379751 | 54379212 | ID=cds.MS.gene68539.t1;Parent=MS.gene68539.t1 |
| Gene Sequence |
| Protein sequence |
