AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68667

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68667.t1 MTR_2g461240 99.459 185 1 0 1 185 183 367 3.53e-135 382
MS.gene68667.t1 MTR_1g012960 86.286 175 23 1 1 174 263 437 1.96e-110 322
MS.gene68667.t1 MTR_4g116545 85.027 187 24 3 1 185 157 341 4.52e-108 313
MS.gene68667.t1 MTR_4g116545 89.080 174 17 2 1 172 157 330 1.42e-107 311
MS.gene68667.t1 MTR_3g106400 83.333 174 27 1 1 172 197 370 8.03e-105 305
MS.gene68667.t1 MTR_3g106400 83.333 174 27 1 1 172 197 370 8.50e-105 305
MS.gene68667.t1 MTR_3g106400 83.333 174 27 1 1 172 197 370 3.10e-104 306
MS.gene68667.t1 MTR_5g011070 72.000 175 46 1 1 172 117 291 2.00e-86 256
MS.gene68667.t1 MTR_1g084060 54.217 83 38 0 75 157 163 245 1.64e-20 86.3
MS.gene68667.t1 MTR_1g084060 54.217 83 38 0 75 157 163 245 2.30e-20 86.7
MS.gene68667.t1 MTR_5g033720 51.807 83 40 0 75 157 212 294 7.23e-18 79.7
MS.gene68667.t1 MTR_2g024390 34.395 157 83 3 2 157 200 337 4.56e-17 78.2
MS.gene68667.t1 MTR_1g017080 48.193 83 43 0 75 157 260 342 8.36e-17 77.4
MS.gene68667.t1 MTR_5g085860 66.667 45 15 0 113 157 219 263 1.42e-15 73.2
MS.gene68667.t1 MTR_4g019450 38.356 73 43 1 85 157 349 419 4.64e-11 61.2
MS.gene68667.t1 MTR_2g095050 33.058 121 76 3 60 180 404 519 6.63e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68667.t1 AT5G11060 86.667 180 20 2 1 180 214 389 6.66e-111 322
MS.gene68667.t1 AT5G25220 83.152 184 28 1 1 184 250 430 7.86e-110 320
MS.gene68667.t1 AT5G25220 87.791 172 18 1 1 172 250 418 1.32e-108 317
MS.gene68667.t1 AT4G32040 77.528 178 37 3 1 175 204 381 3.58e-94 279
MS.gene68667.t1 AT4G32040 81.761 159 27 2 1 157 204 362 1.85e-93 277
MS.gene68667.t1 AT1G62990 71.264 174 48 2 1 172 117 290 3.74e-85 253
MS.gene68667.t1 AT1G70510 51.807 83 40 0 75 157 207 289 1.79e-20 86.7
MS.gene68667.t1 AT1G70510 51.807 83 40 0 75 157 211 293 1.80e-20 87.0
MS.gene68667.t1 AT1G23380 45.714 105 55 1 75 179 223 325 1.04e-19 85.1
MS.gene68667.t1 AT1G23380 45.714 105 55 1 75 179 225 327 1.15e-19 84.7
MS.gene68667.t1 AT4G08150 48.193 83 43 0 75 157 278 360 3.97e-17 78.6
MS.gene68667.t1 AT1G62360 49.398 83 42 0 75 157 261 343 7.82e-17 77.4

Find 49 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACCTCTTGCGTTTGGTTT+TGG 0.207700 2.3:-39569296 None:intergenic
TGAAAGTGAAAGATCTTTAA+TGG 0.234617 2.3:+39566810 MS.gene68667:CDS
GGTGGCAATCACACTCTAAA+TGG 0.296115 2.3:+39567151 MS.gene68667:CDS
TTAATTGAAGTCCTGTTTCC+TGG 0.314760 2.3:-39569201 None:intergenic
AATTAAAGCAAATAAATAAC+TGG 0.337783 2.3:+39569218 MS.gene68667:CDS
GGTTCATTAATCAAAGAAAA+AGG 0.346232 2.3:+39569239 MS.gene68667:CDS
TCATGCCATGGAAGCTGTTA+TGG 0.355360 2.3:+39566509 None:intergenic
GCTAGGTTGGTCCAGGAAAC+AGG 0.387799 2.3:+39569190 MS.gene68667:CDS
AAAAGGGAGGTTGTGTCACC+TGG 0.391359 2.3:-39567120 None:intergenic
TTATATGAAGGAAGCCTTGA+TGG 0.403625 2.3:+39566751 MS.gene68667:CDS
GGAAGCTGTTATGGCTTGTT+GGG 0.411048 2.3:+39566518 MS.gene68667:CDS
TGGAAGCTGTTATGGCTTGT+TGG 0.413199 2.3:+39566517 MS.gene68667:CDS
TTAAAACTTACAGTTGGATA+AGG 0.418650 2.3:-39567174 None:intergenic
GTTGAAGCACGAGCTTAAAC+AGG 0.438830 2.3:+39566849 MS.gene68667:CDS
ATTGCCACCAAGCTTTCAAA+AGG 0.450033 2.3:-39567137 None:intergenic
TGTTATGGCTTGTTGGGAGC+TGG 0.458320 2.3:+39566524 MS.gene68667:CDS
AGAAGAGCGGGAAAGCTCCC+AGG 0.495370 2.3:+39567102 MS.gene68667:CDS
TTTAATGGAACGTGTGAGGC+AGG 0.496599 2.3:+39566825 MS.gene68667:CDS
AGTTTGCATTGCTCTCTGCT+TGG 0.514653 2.3:-39566729 None:intergenic
AGCAATGCAAACTTATATGA+AGG 0.526547 2.3:+39566739 MS.gene68667:CDS
AAAGATCTTTCACTTTCAGT+AGG 0.529421 2.3:-39566805 None:intergenic
GGTGGTGATAGTCTCAGCTT+TGG 0.534812 2.3:+39566772 MS.gene68667:CDS
AGACAAGGCTAGGTTGGTCC+AGG 0.536981 2.3:+39569183 MS.gene68667:CDS
GTATCTCCTGGTGAAGGGAG+TGG 0.537968 2.3:+39566679 MS.gene68667:CDS
GGAAGAAGACAAGGCTAGGT+TGG 0.538207 2.3:+39569177 MS.gene68667:intron
CAGTCTCTACAAAGCTTGAC+CGG 0.543218 2.3:+39566549 MS.gene68667:CDS
ACAAGCCATAACAGCTTCCA+TGG 0.548095 2.3:-39566514 None:intergenic
ATTCTACGGAAGAGAAGAGC+GGG 0.553812 2.3:+39567090 MS.gene68667:CDS
TGCCAAATCACATGAAACTC+TGG 0.553931 2.3:-39569441 None:intergenic
TCACTTTCAGTAGGAACAAG+AGG 0.559140 2.3:-39566796 None:intergenic
CCACCAAGCTTTCAAAAGGG+AGG 0.569465 2.3:-39567133 None:intergenic
ACAGGTGTATCTCCTGGTGA+AGG 0.571753 2.3:+39566673 MS.gene68667:intron
ACTAATCCTTCGTCTTCCAC+TGG 0.572883 2.3:+39569271 MS.gene68667:CDS
TCTAGGAAGAAGACAAGGCT+AGG 0.588097 2.3:+39569173 MS.gene68667:intron
GTTGCACCACTCCCTTCACC+AGG 0.588826 2.3:-39566685 None:intergenic
GGGTTACAAGAGTAAGATTG+TGG 0.594567 2.3:+39567053 MS.gene68667:intron
ACATAAGAGAAGAAATTCTA+CGG 0.596585 2.3:+39567076 MS.gene68667:CDS
TGAGACTATCACCACCATCA+AGG 0.601612 2.3:-39566765 None:intergenic
GCATGAACAGGTGTATCTCC+TGG 0.604904 2.3:+39566667 MS.gene68667:intron
CAGGTGTATCTCCTGGTGAA+GGG 0.604940 2.3:+39566674 MS.gene68667:intron
TTGCCACCAAGCTTTCAAAA+GGG 0.611238 2.3:-39567136 None:intergenic
AAAGGGAGGTTGTGTCACCT+GGG 0.629103 2.3:-39567119 None:intergenic
GATCTTTAATGGAACGTGTG+AGG 0.637290 2.3:+39566821 MS.gene68667:CDS
TTGGAGCCAGTGGAAGACGA+AGG 0.640820 2.3:-39569277 None:intergenic
GCTCCAAAACCAAACGCAAG+AGG 0.641070 2.3:+39569293 MS.gene68667:CDS
AGGGAGTGGTGCAACAATGT+CGG 0.641905 2.3:+39566693 MS.gene68667:CDS
GTACTTCTAGGAAGAAGACA+AGG 0.678532 2.3:+39569168 MS.gene68667:intron
AATTCTACGGAAGAGAAGAG+CGG 0.693061 2.3:+39567089 MS.gene68667:CDS
TATGAAGGAAGCCTTGATGG+TGG 0.736950 2.3:+39566754 MS.gene68667:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAATTAATAAAAAT+TGG + chr2.3:39567233-39567252 MS.gene68667:intron 0.0%
!!! AATATTAATTATTTTATTTA+TGG + chr2.3:39567370-39567389 MS.gene68667:intron 0.0%
!! AATCACATAATTATTTAAAA+TGG + chr2.3:39566986-39567005 MS.gene68667:intron 10.0%
!! TCAAAAATAGAAATAAATAT+AGG + chr2.3:39567498-39567517 MS.gene68667:intron 10.0%
!!! TATGAATTATTTAAAACTTT+GGG - chr2.3:39567589-39567608 None:intergenic 10.0%
!!! TTATGAATTATTTAAAACTT+TGG - chr2.3:39567590-39567609 None:intergenic 10.0%
!!! TTCAAAATATACTAATTTTA+AGG - chr2.3:39567342-39567361 None:intergenic 10.0%
!! AAATTAAATAATCTCATTCA+AGG + chr2.3:39568110-39568129 MS.gene68667:intron 15.0%
!! AATTAAAGCAAATAAATAAC+TGG + chr2.3:39569218-39569237 MS.gene68667:CDS 15.0%
!! ATTAATGTTAATAAAGGATA+GGG - chr2.3:39568234-39568253 None:intergenic 15.0%
!! CATGTTATTAATGTTAATAA+AGG - chr2.3:39568240-39568259 None:intergenic 15.0%
!! TAATCTAAATAGATCAATAA+TGG - chr2.3:39567448-39567467 None:intergenic 15.0%
!! TATTAATGTTAATAAAGGAT+AGG - chr2.3:39568235-39568254 None:intergenic 15.0%
!!! TTAACATGACTTTTTTTTAA+GGG - chr2.3:39568780-39568799 None:intergenic 15.0%
!! AAGTTAGTAGTATTAATTAG+GGG - chr2.3:39568473-39568492 None:intergenic 20.0%
!! ACAAGTTAGTAGTATTAATT+AGG - chr2.3:39568475-39568494 None:intergenic 20.0%
!! AGTATAAAATATATACACCA+TGG - chr2.3:39566922-39566941 None:intergenic 20.0%
!! ATAACTTATGTGATTTGAAA+AGG + chr2.3:39568648-39568667 MS.gene68667:intron 20.0%
!! CAAATATAAAATCAAATAGG+TGG - chr2.3:39568389-39568408 None:intergenic 20.0%
!! CAAGTTAGTAGTATTAATTA+GGG - chr2.3:39568474-39568493 None:intergenic 20.0%
!! GAAATATAAAAAAGACAAAG+TGG + chr2.3:39568600-39568619 MS.gene68667:intron 20.0%
!! GGACAAATATAAAATCAAAT+AGG - chr2.3:39568392-39568411 None:intergenic 20.0%
!! TTAATCAAAGAAAAAGGAAT+TGG + chr2.3:39569245-39569264 MS.gene68667:CDS 20.0%
!! TTTAATACACATACAAACAA+AGG + chr2.3:39568516-39568535 MS.gene68667:intron 20.0%
!!! AAATAGATCAATAATGGATA+AGG - chr2.3:39567442-39567461 None:intergenic 20.0%
!!! AATAGATCAATAATGGATAA+GGG - chr2.3:39567441-39567460 None:intergenic 20.0%
!!! ATTTTAACAAACTTTAAGGA+AGG - chr2.3:39567982-39568001 None:intergenic 20.0%
!!! CTACTGTATGTTTTTTTTTT+TGG - chr2.3:39568975-39568994 None:intergenic 20.0%
!!! GATATTTGAAACTTAATTAC+CGG - chr2.3:39566571-39566590 None:intergenic 20.0%
!!! GTTAACATGACTTTTTTTTA+AGG - chr2.3:39568781-39568800 None:intergenic 20.0%
!!! TAATGTTTTTTCAATATGCA+GGG + chr2.3:39567033-39567052 MS.gene68667:intron 20.0%
!!! TGACATTTTAACAAACTTTA+AGG - chr2.3:39567986-39568005 None:intergenic 20.0%
!!! TTAATGTTTTTTCAATATGC+AGG + chr2.3:39567032-39567051 MS.gene68667:intron 20.0%
!!! TTTTTACTTTTCAATAGTAG+TGG + chr2.3:39569400-39569419 MS.gene68667:intron 20.0%
! ACATAAGAGAAGAAATTCTA+CGG + chr2.3:39567076-39567095 MS.gene68667:CDS 25.0%
! ATGCATCTAGTAATTTGAAA+AGG - chr2.3:39568428-39568447 None:intergenic 25.0%
! CATTGAAAATTAAGTAGTGA+AGG - chr2.3:39568039-39568058 None:intergenic 25.0%
! GGTTCATTAATCAAAGAAAA+AGG + chr2.3:39569239-39569258 MS.gene68667:CDS 25.0%
! TGAAAAGGAGTTTACATTTA+GGG - chr2.3:39568413-39568432 None:intergenic 25.0%
! TGAAAGTGAAAGATCTTTAA+TGG + chr2.3:39566810-39566829 MS.gene68667:CDS 25.0%
! TTAAAACTTACAGTTGGATA+AGG - chr2.3:39567177-39567196 None:intergenic 25.0%
! TTGAAAAGGAGTTTACATTT+AGG - chr2.3:39568414-39568433 None:intergenic 25.0%
! TTGATCTTAAAACTTACAGT+TGG - chr2.3:39567183-39567202 None:intergenic 25.0%
!! TCGTAAAGTGATTTGTAAAT+TGG + chr2.3:39568315-39568334 MS.gene68667:intron 25.0%
!!! AAGTGAAGTATTTTTCTCAA+AGG + chr2.3:39567791-39567810 MS.gene68667:intron 25.0%
!!! AGTGAAGTATTTTTCTCAAA+GGG + chr2.3:39567792-39567811 MS.gene68667:intron 25.0%
!!! CTTTTTAACTTATGCCTTAA+GGG + chr2.3:39568934-39568953 MS.gene68667:intron 25.0%
!!! TACCTTTATTTGACTTTTCT+AGG - chr2.3:39568091-39568110 None:intergenic 25.0%
!!! TTTCTTTAAAATACCCTCAT+GGG - chr2.3:39567763-39567782 None:intergenic 25.0%
!!! TTTTCTTTAAAATACCCTCA+TGG - chr2.3:39567764-39567783 None:intergenic 25.0%
AAAGATCTTTCACTTTCAGT+AGG - chr2.3:39566808-39566827 None:intergenic 30.0%
AATTAAGTAGTGAAGGTTTG+TGG - chr2.3:39568032-39568051 None:intergenic 30.0%
ACAAGAAAAAAGAGTCCATT+AGG - chr2.3:39569332-39569351 None:intergenic 30.0%
AGATGAATTCTTAGTTAGCT+AGG - chr2.3:39569090-39569109 None:intergenic 30.0%
AGCAATGCAAACTTATATGA+AGG + chr2.3:39566739-39566758 MS.gene68667:CDS 30.0%
AGTTTCAACATATACTTCCT+CGG - chr2.3:39567849-39567868 None:intergenic 30.0%
ATGATCACACTAAGTTTGAT+AGG - chr2.3:39567686-39567705 None:intergenic 30.0%
ATTTACTCCATAGTTGACAT+AGG - chr2.3:39567266-39567285 None:intergenic 30.0%
CAAATAGGTGGTTACATATA+GGG - chr2.3:39568377-39568396 None:intergenic 30.0%
CAAGAAAAAAGAGTCCATTA+GGG - chr2.3:39569331-39569350 None:intergenic 30.0%
CATACAAACAAAGGACAATT+TGG + chr2.3:39568525-39568544 MS.gene68667:intron 30.0%
CCTTAAGGCATAAGTTAAAA+AGG - chr2.3:39568936-39568955 None:intergenic 30.0%
GACCTAGAAAAGTCAAATAA+AGG + chr2.3:39568086-39568105 MS.gene68667:intron 30.0%
GGAAAAAATGCAAAAACCTA+GGG + chr2.3:39568140-39568159 MS.gene68667:intron 30.0%
TATTCGAGAGAAAATTACGA+GGG - chr2.3:39568709-39568728 None:intergenic 30.0%
TCAAATAGGTGGTTACATAT+AGG - chr2.3:39568378-39568397 None:intergenic 30.0%
TCTAATATGATCAGCAATCA+TGG - chr2.3:39569139-39569158 None:intergenic 30.0%
TGATCACACTAAGTTTGATA+GGG - chr2.3:39567685-39567704 None:intergenic 30.0%
TGGAAAAAATGCAAAAACCT+AGG + chr2.3:39568139-39568158 MS.gene68667:intron 30.0%
TGGAAGAGTCTAATAATTCA+AGG - chr2.3:39569119-39569138 None:intergenic 30.0%
TTATTCGAGAGAAAATTACG+AGG - chr2.3:39568710-39568729 None:intergenic 30.0%
! AATCTCATTCAAGGAGTTTT+TGG + chr2.3:39568119-39568138 MS.gene68667:intron 30.0%
! AGACAAAGTGGATTTACATA+CGG + chr2.3:39568612-39568631 MS.gene68667:intron 30.0%
! TATTAATTAGGGGCATGTTT+AGG - chr2.3:39568463-39568482 None:intergenic 30.0%
! TGGCTTTTTATCTTTGCAAA+TGG - chr2.3:39566635-39566654 None:intergenic 30.0%
! TTTTTCTCCTATGTCAACTA+TGG + chr2.3:39567256-39567275 MS.gene68667:intron 30.0%
!! AATAATGGATAAGGGTATTG+GGG - chr2.3:39567433-39567452 None:intergenic 30.0%
!! CAATAATGGATAAGGGTATT+GGG - chr2.3:39567434-39567453 None:intergenic 30.0%
!! TCAATAATGGATAAGGGTAT+TGG - chr2.3:39567435-39567454 None:intergenic 30.0%
!!! CCTTTTTAACTTATGCCTTA+AGG + chr2.3:39568933-39568952 MS.gene68667:intron 30.0%
AGTTAGCTAGGCACATTAAT+TGG - chr2.3:39569078-39569097 None:intergenic 35.0%
ATCCGTACTAGTAATGATCA+AGG + chr2.3:39569008-39569027 MS.gene68667:intron 35.0%
ATGCTTATGACTTGACACAT+TGG - chr2.3:39568743-39568762 None:intergenic 35.0%
CATTATTAATTCCCCAGTCA+TGG - chr2.3:39569040-39569059 None:intergenic 35.0%
CTCCTTGATCATTACTAGTA+CGG - chr2.3:39569013-39569032 None:intergenic 35.0%
GTACGAAATGACAATTGTCA+CGG - chr2.3:39567209-39567228 None:intergenic 35.0%
TGCTTATGACTTGACACATT+GGG - chr2.3:39568742-39568761 None:intergenic 35.0%
TTAATTGAAGTCCTGTTTCC+TGG - chr2.3:39569204-39569223 None:intergenic 35.0%
TTATATGAAGGAAGCCTTGA+TGG + chr2.3:39566751-39566770 MS.gene68667:CDS 35.0%
TTATCTTTGCAAATGGTACG+TGG - chr2.3:39566628-39566647 None:intergenic 35.0%
TTGTGGCCCATTAGAAAATA+GGG - chr2.3:39568015-39568034 None:intergenic 35.0%
TTTCTTGATACGCATGAAAG+TGG - chr2.3:39567916-39567935 None:intergenic 35.0%
TTTGTGGCCCATTAGAAAAT+AGG - chr2.3:39568016-39568035 None:intergenic 35.0%
! ACAAAGTGGATTTACATACG+GGG + chr2.3:39568614-39568633 MS.gene68667:intron 35.0%
! ACTCACACCCTATTTTCTAA+TGG + chr2.3:39568005-39568024 MS.gene68667:intron 35.0%
! CTCACACCCTATTTTCTAAT+GGG + chr2.3:39568006-39568025 MS.gene68667:intron 35.0%
! GACAAAGTGGATTTACATAC+GGG + chr2.3:39568613-39568632 MS.gene68667:intron 35.0%
!! ATAATGGATAAGGGTATTGG+GGG - chr2.3:39567432-39567451 None:intergenic 35.0%
!!! GGTGAGTTTTTTTTCCCTAA+TGG + chr2.3:39569314-39569333 MS.gene68667:intron 35.0%
AAAAACTCACCTCTTGCGTT+TGG - chr2.3:39569305-39569324 None:intergenic 40.0%
AATGCAATGCAATGCAACCA+TGG + chr2.3:39566902-39566921 MS.gene68667:intron 40.0%
AATGGAACAAGTTCCCATGA+GGG + chr2.3:39567747-39567766 MS.gene68667:intron 40.0%
AATGTTAACCTGTGCCCTTA+AGG - chr2.3:39568951-39568970 None:intergenic 40.0%
AATTCTACGGAAGAGAAGAG+CGG + chr2.3:39567089-39567108 MS.gene68667:CDS 40.0%
AGACTCGTGAATGTACTTCT+AGG + chr2.3:39569156-39569175 MS.gene68667:intron 40.0%
ATTGCCACCAAGCTTTCAAA+AGG - chr2.3:39567140-39567159 None:intergenic 40.0%
CACAACCATCAGAACTTAAG+AGG + chr2.3:39568163-39568182 MS.gene68667:intron 40.0%
CTTATGACTTGACACATTGG+GGG - chr2.3:39568740-39568759 None:intergenic 40.0%
GATCTTTAATGGAACGTGTG+AGG + chr2.3:39566821-39566840 MS.gene68667:CDS 40.0%
GCTTATGACTTGACACATTG+GGG - chr2.3:39568741-39568760 None:intergenic 40.0%
GGGTTACAAGAGTAAGATTG+TGG + chr2.3:39567053-39567072 MS.gene68667:intron 40.0%
GTTCATGCATGCATCATGTA+TGG - chr2.3:39566655-39566674 None:intergenic 40.0%
TAATGGAACAAGTTCCCATG+AGG + chr2.3:39567746-39567765 MS.gene68667:intron 40.0%
TACATGATGCATGCATGAAC+AGG + chr2.3:39566655-39566674 MS.gene68667:intron 40.0%
TAGGTGGTTACATATAGGGA+CGG - chr2.3:39568373-39568392 None:intergenic 40.0%
TCACTTTCAGTAGGAACAAG+AGG - chr2.3:39566799-39566818 None:intergenic 40.0%
TTGCCACCAAGCTTTCAAAA+GGG - chr2.3:39567139-39567158 None:intergenic 40.0%
! CTTTGCCTCTTAAGTTCTGA+TGG - chr2.3:39568171-39568190 None:intergenic 40.0%
! CTTTTGTTGAATGAGATCCG+AGG + chr2.3:39567829-39567848 MS.gene68667:intron 40.0%
! GTACTTCTAGGAAGAAGACA+AGG + chr2.3:39569168-39569187 MS.gene68667:intron 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG + chr2.3:39568792-39568811 MS.gene68667:intron 40.0%
!! TATTTTTCTCAAAGGGTGCG+AGG + chr2.3:39567799-39567818 MS.gene68667:intron 40.0%
!! TCATGTTAACTTGTGCCCTA+AGG + chr2.3:39568791-39568810 MS.gene68667:intron 40.0%
ACTAATCCTTCGTCTTCCAC+TGG + chr2.3:39569271-39569290 MS.gene68667:CDS 45.0%
AGTTTGCATTGCTCTCTGCT+TGG - chr2.3:39566732-39566751 None:intergenic 45.0%
ATTCTACGGAAGAGAAGAGC+GGG + chr2.3:39567090-39567109 MS.gene68667:CDS 45.0%
CAGTCTCTACAAAGCTTGAC+CGG + chr2.3:39566549-39566568 MS.gene68667:CDS 45.0%
GATTTACATACGGGGACTGA+GGG + chr2.3:39568622-39568641 MS.gene68667:intron 45.0%
GCAAATGGTACGTGGATGAT+TGG - chr2.3:39566620-39566639 None:intergenic 45.0%
GGTGGCAATCACACTCTAAA+TGG + chr2.3:39567151-39567170 MS.gene68667:CDS 45.0%
GTTGAAGCACGAGCTTAAAC+AGG + chr2.3:39566849-39566868 MS.gene68667:CDS 45.0%
TATGAAGGAAGCCTTGATGG+TGG + chr2.3:39566754-39566773 MS.gene68667:CDS 45.0%
TCTAGGAAGAAGACAAGGCT+AGG + chr2.3:39569173-39569192 MS.gene68667:intron 45.0%
TGAGACTATCACCACCATCA+AGG - chr2.3:39566768-39566787 None:intergenic 45.0%
TGGTTACATATAGGGACGGA+GGG - chr2.3:39568369-39568388 None:intergenic 45.0%
TTTAATGGAACGTGTGAGGC+AGG + chr2.3:39566825-39566844 MS.gene68667:CDS 45.0%
! AACTTATGCCTTAAGGGCAC+AGG + chr2.3:39568940-39568959 MS.gene68667:intron 45.0%
! CTTTTCAATAGTAGTGGCGC+AGG + chr2.3:39569406-39569425 MS.gene68667:intron 45.0%
! TGGAAGCTGTTATGGCTTGT+TGG + chr2.3:39566517-39566536 MS.gene68667:CDS 45.0%
!! CAACCTCCCTTTTGAAAGCT+TGG + chr2.3:39567130-39567149 MS.gene68667:CDS 45.0%
!! CTCCTTAACTTGTGCCCTTA+GGG - chr2.3:39568809-39568828 None:intergenic 45.0%
!! GGAAGCTGTTATGGCTTGTT+GGG + chr2.3:39566518-39566537 MS.gene68667:CDS 45.0%
!! TCACCTCTTGCGTTTGGTTT+TGG - chr2.3:39569299-39569318 None:intergenic 45.0%
!! TAAAAAAAAAATGTTAATAA+AGG - chr2.3:39568197-39568216 None:intergenic 5.0%
!!! AATAATACTTTTAATATTAA+TGG + chr2.3:39567729-39567748 MS.gene68667:intron 5.0%
AAAAGGGAGGTTGTGTCACC+TGG - chr2.3:39567123-39567142 None:intergenic 50.0%
AAAGGGAGGTTGTGTCACCT+GGG - chr2.3:39567122-39567141 None:intergenic 50.0%
ACAGGTGTATCTCCTGGTGA+AGG + chr2.3:39566673-39566692 MS.gene68667:intron 50.0%
AGGGAGTGGTGCAACAATGT+CGG + chr2.3:39566693-39566712 MS.gene68667:CDS 50.0%
ATCAAGGAGACAGCCATGAC+TGG + chr2.3:39569024-39569043 MS.gene68667:intron 50.0%
CAGGTGTATCTCCTGGTGAA+GGG + chr2.3:39566674-39566693 MS.gene68667:intron 50.0%
CCACCAAGCTTTCAAAAGGG+AGG - chr2.3:39567136-39567155 None:intergenic 50.0%
GCATGAACAGGTGTATCTCC+TGG + chr2.3:39566667-39566686 MS.gene68667:intron 50.0%
GCTCCAAAACCAAACGCAAG+AGG + chr2.3:39569293-39569312 MS.gene68667:CDS 50.0%
GGAAGAAGACAAGGCTAGGT+TGG + chr2.3:39569177-39569196 MS.gene68667:intron 50.0%
GGATTTACATACGGGGACTG+AGG + chr2.3:39568621-39568640 MS.gene68667:intron 50.0%
GGTGGTGATAGTCTCAGCTT+TGG + chr2.3:39566772-39566791 MS.gene68667:CDS 50.0%
GTGGTTACATATAGGGACGG+AGG - chr2.3:39568370-39568389 None:intergenic 50.0%
TCAAGGAGACAGCCATGACT+GGG + chr2.3:39569025-39569044 MS.gene68667:intron 50.0%
! AGTTCTGATGGTTGTGCCCT+AGG - chr2.3:39568159-39568178 None:intergenic 50.0%
! TGCCCTAAGGGCACAAGTTA+AGG + chr2.3:39568804-39568823 MS.gene68667:intron 50.0%
!! CCTCCCTTTTGAAAGCTTGG+TGG + chr2.3:39567133-39567152 MS.gene68667:CDS 50.0%
!! GCTCCTTAACTTGTGCCCTT+AGG - chr2.3:39568810-39568829 None:intergenic 50.0%
!! TGTTATGGCTTGTTGGGAGC+TGG + chr2.3:39566524-39566543 MS.gene68667:CDS 50.0%
CAAGGAGACAGCCATGACTG+GGG + chr2.3:39569026-39569045 MS.gene68667:intron 55.0%
GTATCTCCTGGTGAAGGGAG+TGG + chr2.3:39566679-39566698 MS.gene68667:CDS 55.0%
TTGGAGCCAGTGGAAGACGA+AGG - chr2.3:39569280-39569299 None:intergenic 55.0%
!! AGACAAGGCTAGGTTGGTCC+AGG + chr2.3:39569183-39569202 MS.gene68667:CDS 55.0%
!! GCTAGGTTGGTCCAGGAAAC+AGG + chr2.3:39569190-39569209 MS.gene68667:CDS 55.0%
!!! GCGTTTGGTTTTGGAGCCAG+TGG - chr2.3:39569290-39569309 None:intergenic 55.0%
AGAAGAGCGGGAAAGCTCCC+AGG + chr2.3:39567102-39567121 MS.gene68667:CDS 60.0%
GTTGCACCACTCCCTTCACC+AGG - chr2.3:39566688-39566707 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 39566516 39569456 39566516 ID=MS.gene68667
chr2.3 mRNA 39566516 39569456 39566516 ID=MS.gene68667.t1;Parent=MS.gene68667
chr2.3 exon 39566516 39566570 39566516 ID=MS.gene68667.t1.exon1;Parent=MS.gene68667.t1
chr2.3 CDS 39566516 39566570 39566516 ID=cds.MS.gene68667.t1;Parent=MS.gene68667.t1
chr2.3 exon 39566677 39566870 39566677 ID=MS.gene68667.t1.exon2;Parent=MS.gene68667.t1
chr2.3 CDS 39566677 39566870 39566677 ID=cds.MS.gene68667.t1;Parent=MS.gene68667.t1
chr2.3 exon 39567054 39567185 39567054 ID=MS.gene68667.t1.exon3;Parent=MS.gene68667.t1
chr2.3 CDS 39567054 39567185 39567054 ID=cds.MS.gene68667.t1;Parent=MS.gene68667.t1
chr2.3 exon 39569178 39569314 39569178 ID=MS.gene68667.t1.exon4;Parent=MS.gene68667.t1
chr2.3 CDS 39569178 39569314 39569178 ID=cds.MS.gene68667.t1;Parent=MS.gene68667.t1
chr2.3 exon 39569417 39569456 39569417 ID=MS.gene68667.t1.exon5;Parent=MS.gene68667.t1
chr2.3 CDS 39569417 39569456 39569417 ID=cds.MS.gene68667.t1;Parent=MS.gene68667.t1
Gene Sequence

>MS.gene68667

ATGGAAGCTGTTATGGCTTGTTGGGAGCTGGAGCAGTCTCTACAAAGCTTGACCGGTAATTAAGTTTCAAATATCAGTAATGATATCTTTGTTTCAAATTTCCAATCATCCACGTACCATTTGCAAAGATAAAAAGCCATACATGATGCATGCATGAACAGGTGTATCTCCTGGTGAAGGGAGTGGTGCAACAATGTCGGACGATGAAGACGACCAAGCAGAGAGCAATGCAAACTTATATGAAGGAAGCCTTGATGGTGGTGATAGTCTCAGCTTTGGTCCTCTTGTTCCTACTGAAAGTGAAAGATCTTTAATGGAACGTGTGAGGCAGGAGTTGAAGCACGAGCTTAAACAGGTAGCACATTATAACTTTCTCATATATATGCAATGCAATGCAATGCAACCATGGTGTATATATTTTATACTATATATACGTGACATGCATGTGTCTTTGCAAAGATGAAAGAATCAATCACATAATTATTTAAAATGGATTGATTTGCATAGTTAATTAATTTAATGTTTTTTCAATATGCAGGGTTACAAGAGTAAGATTGTGGACATAAGAGAAGAAATTCTACGGAAGAGAAGAGCGGGAAAGCTCCCAGGTGACACAACCTCCCTTTTGAAAGCTTGGTGGCAATCACACTCTAAATGGCCTTATCCAACTGTAAGTTTTAAGATCAATGTCCGTGACAATTGTCATTTCGTACATCTATAAAAAAATTAATAAAAATTGGTTTTTCTCCTATGTCAACTATGGAGTAAATTGAAATTAAATTAGAATTATATGATATCTTTTACTATTAAGAATAAACATATACCTTAAAATTAGTATATTTTGAAACTAATCTAATATTAATTATTTTATTTATGGATTGCATTTAAAAAGAACGAAGTAGTAATATCTTTTCCCCCAATACCCTTATCCATTATTGATCTATTTAGATTAACATGTTTTTTAATCTTAATAAGTAGTATATCAAAAATAGAAATAAATATAGGAGTATTAATAAACTAGTACAAGATAGATAATATATGTATAGAATCTTCAATAATAATAACAATTTCCCAAAGTTTTAAATAATTCATAAAAAAACTAATTTTATTCTAACAACAAAAAAGTCTTATTTGTGATCTCAAATATAAAGAAAAAAATCAACTAACCCTATCAAACTTAGTGTGATCATTCTTAAATTTAAATTTGTTTTTCAATAATACTTTTAATATTAATGGAACAAGTTCCCATGAGGGTATTTTAAAGAAAATTAAATGAAGTGAAGTATTTTTCTCAAAGGGTGCGAGGTAGTTTGCTTTTGTTGAATGAGATCCGAGGAAGTATATGTTGAAACTCATTTGAACAATTACTCATTTGTTTTTAATTATACATCATTTTGCCACTTTCATGCGTATCAAGAAATGTAATTGATTTTATATAAAAAAATTAGAGTAAATTACACTTACCTTCCTTAAAGTTTGTTAAAATGTCACTCACACCCTATTTTCTAATGGGCCACAAACCTTCACTACTTAATTTTCAATGTCAAGAAAATAACTTAATCAAGAAAGTGACCTAGAAAAGTCAAATAAAGGTAAATTAAATAATCTCATTCAAGGAGTTTTTGGAAAAAATGCAAAAACCTAGGGCACAACCATCAGAACTTAAGAGGCAAAGTGTCCTTTATTAACATTTTTTTTTTAAGAAGCTAAATTAGCCCTATCCTTTATTAACATTAATAACATGTAAAAAAAACATTAATATTTATTTATACGCAAAAATTATTAATATTTAATTGATATCGTAAAGTGATTTGTAAATTGGTAAAAACAAAATTTGTTTTCAAAATACTCCCTCCGTCCCTATATGTAACCACCTATTTGATTTTATATTTGTCCCTAAATGTAAACTCCTTTTCAAATTACTAGATGCATTTATTATTTTTTCCTAAACATGCCCCTAATTAATACTACTAACTTGTCTTGAAATATGTAAAGTCAAATTTAATACACATACAAACAAAGGACAATTTGGTAATATTAACACACAAAATAGATACATTAATTACACTAACAACTTTTCTTAAGAAATATAAAAAAGACAAAGTGGATTTACATACGGGGACTGAGGGAGTATAACTTATGTGATTTGAAAAGGATGTACTAGTGATGAGTAATTAGAAAAGTCTTGCACCCTCGTAATTTTCTCTCGAATAATATGTGTCCCCCAATGTGTCAAGTCATAAGCATATACAGTAGAACTTCCCTTAAAAAAAAGTCATGTTAACTTGTGCCCTAAGGGCACAAGTTAAGGAGCTTAAAATAGAAAGTCAAAGCAACTTTTATATTATAAATACAACTTTTGAAATTTTTAATGCATTGAATGCACAATTTCTAAGATTTTTTTTTTCTACATTTAGCCTTTTTAACTTATGCCTTAAGGGCACAGGTTAACATTTCCAAAAAAAAAAACATACAGTAGAACTTGATTATTTATCCGTACTAGTAATGATCAAGGAGACAGCCATGACTGGGGAATTAATAATGTATTAATGTTATGTTCCAATTAATGTGCCTAGCTAACTAAGAATTCATCTACGCAACCTTGAATTATTAGACTCTTCCATGATTGCTGATCATATTAGACTCGTGAATGTACTTCTAGGAAGAAGACAAGGCTAGGTTGGTCCAGGAAACAGGACTTCAATTAAAGCAAATAAATAACTGGTTCATTAATCAAAGAAAAAGGAATTGGCATACTAATCCTTCGTCTTCCACTGGCTCCAAAACCAAACGCAAGAGGTGAGTTTTTTTTCCCTAATGGACTCTTTTTTCTTGTTTCACAATGTGTTTATTTTAGTTGATGCTTAATCTGATTTTTTATTTTTTTTTACTTTTCAATAGTAGTGGCGCAGGTGAAACAAGTAACCAGAGTTTCATGTGA
Protein sequence

>MS.gene68667.t1

MEAVMACWELEQSLQSLTGVSPGEGSGATMSDDEDDQAESNANLYEGSLDGGDSLSFGPLVPTESERSLMERVRQELKHELKQGYKSKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGSKTKRKSSGAGETSNQSFM