AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68668

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68668.t1 MTR_2g461240 97.581 372 2 2 1 370 1 367 0.0 747
MS.gene68668.t1 MTR_4g116545 72.386 373 68 8 1 370 1 341 0.0 505
MS.gene68668.t1 MTR_4g116545 73.889 360 61 7 1 357 1 330 1.32e-180 504
MS.gene68668.t1 MTR_1g012960 81.413 269 46 2 95 359 169 437 1.08e-164 468
MS.gene68668.t1 MTR_3g106400 66.860 344 84 7 42 357 29 370 1.56e-157 447
MS.gene68668.t1 MTR_3g106400 66.667 345 83 7 42 357 29 370 1.89e-157 447
MS.gene68668.t1 MTR_3g106400 66.667 345 83 7 42 357 29 370 6.97e-157 447
MS.gene68668.t1 MTR_5g011070 67.669 266 80 2 98 357 26 291 3.02e-127 368
MS.gene68668.t1 MTR_1g017080 33.333 243 142 5 100 342 120 342 4.55e-29 116
MS.gene68668.t1 MTR_1g084060 34.146 246 139 6 100 342 20 245 8.68e-29 113
MS.gene68668.t1 MTR_2g024390 31.020 245 142 6 100 342 118 337 1.19e-28 115
MS.gene68668.t1 MTR_1g084060 34.146 246 139 6 100 342 20 245 1.31e-28 113
MS.gene68668.t1 MTR_5g033720 34.553 246 134 5 100 342 73 294 1.87e-28 113
MS.gene68668.t1 MTR_5g085860 31.174 247 130 4 103 342 50 263 2.06e-24 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68668.t1 AT5G25220 59.217 434 108 9 1 369 1 430 1.11e-165 470
MS.gene68668.t1 AT5G11060 82.909 275 39 4 97 367 121 391 2.88e-165 468
MS.gene68668.t1 AT5G25220 84.906 265 33 3 97 357 157 418 6.42e-164 465
MS.gene68668.t1 AT4G32040 74.906 267 63 4 97 360 116 381 1.14e-142 410
MS.gene68668.t1 AT4G32040 77.419 248 53 3 97 342 116 362 8.51e-142 407
MS.gene68668.t1 AT1G62990 66.791 268 86 3 93 357 23 290 1.69e-127 368
MS.gene68668.t1 AT1G70510 33.730 252 144 6 91 342 61 289 7.45e-31 119
MS.gene68668.t1 AT4G08150 33.466 251 134 6 100 342 135 360 3.60e-30 119
MS.gene68668.t1 AT1G23380 34.909 275 136 10 96 361 82 322 4.07e-30 118
MS.gene68668.t1 AT1G70510 32.540 252 151 5 91 342 61 293 1.16e-29 116
MS.gene68668.t1 AT1G23380 34.657 277 136 11 96 361 82 324 3.35e-28 113
MS.gene68668.t1 AT1G62360 32.530 249 135 8 100 342 122 343 2.82e-23 100

Find 93 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACCTCTTGCGTTTGGTTT+TGG 0.207700 2.3:-39561243 None:intergenic
TGAAAGTGAAAGATCTTTAA+TGG 0.234617 2.3:+39558132 MS.gene68668:CDS
GGTGGCAATCACACTCTAAA+TGG 0.296115 2.3:+39558893 MS.gene68668:CDS
TTAATTGAAGTCCTGTTTCC+TGG 0.314760 2.3:-39561148 None:intergenic
AATTAAAGCAAATAAATAAC+TGG 0.337783 2.3:+39561165 MS.gene68668:CDS
TGATGATTCTGTGTTGCTTT+CGG 0.340218 2.3:-39555260 None:intergenic
GGTTCATTAATCAAAGAAAA+AGG 0.346232 2.3:+39561186 MS.gene68668:CDS
TCATGCCATGGAAGCTGTTA+TGG 0.355360 2.3:+39557831 MS.gene68668:CDS
CGCTGATCCGGCACCGGCTC+CGG 0.366320 2.3:-39555110 None:intergenic
TAAAACTCACCTCTTGCGTT+TGG 0.382625 2.3:-39561249 None:intergenic
GCTAGGTTGGTCCAGGAAAC+AGG 0.387799 2.3:+39561137 MS.gene68668:CDS
TTTCGGCCCGGTTCCGATCC+CGG 0.391273 2.3:-39555243 None:intergenic
AAAAGGGAGGTTGTGTCACC+TGG 0.391359 2.3:-39558862 None:intergenic
GTGCCGGATCAGCGCCGAAT+TGG 0.392791 2.3:+39555119 MS.gene68668:CDS
TTCGGCCCGGTTCCGATCCC+GGG 0.394283 2.3:-39555242 None:intergenic
AACTGTTGCTCTTCATTGAA+TGG 0.395309 2.3:-39555049 None:intergenic
AGAAAACCCGGGATCGGAAC+CGG 0.397626 2.3:+39555236 MS.gene68668:CDS
TTATATGAAGGAAGCCTTGA+TGG 0.403625 2.3:+39558073 MS.gene68668:CDS
GGAAGCTGTTATGGCTTGTT+GGG 0.411048 2.3:+39557840 MS.gene68668:CDS
TGGAAGCTGTTATGGCTTGT+TGG 0.413199 2.3:+39557839 MS.gene68668:CDS
GAGCCAATTCGGCGCTGATC+CGG 0.419648 2.3:-39555122 None:intergenic
AAAGGAGCTTGATCAATTCA+TGG 0.424580 2.3:+39555471 MS.gene68668:CDS
CCGGCACCGGCTCCGGTGAA+TGG 0.444652 2.3:-39555103 None:intergenic
ACAGCGTTGTTGAGCCAATT+CGG 0.449648 2.3:-39555133 None:intergenic
ATTGCCACCAAGCTTTCAAA+AGG 0.450033 2.3:-39558879 None:intergenic
CAATACAAAGCAGACATACT+TGG 0.452763 2.3:+39555295 MS.gene68668:CDS
AAGTACTCTTCACTTGCTAA+TGG 0.452773 2.3:+39555436 MS.gene68668:CDS
GTTGAAGCACGAGCTAAAAC+AGG 0.454939 2.3:+39558171 MS.gene68668:CDS
TGTTATGGCTTGTTGGGAGC+TGG 0.458320 2.3:+39557846 MS.gene68668:CDS
TTAAAACTTACAGTAGGATA+AGG 0.472729 2.3:-39558916 None:intergenic
GTTCTTTAAAAGCACAGAGC+AGG 0.490015 2.3:-39557786 None:intergenic
TTCACTTGCTAATGGTGTTG+TGG 0.493741 2.3:+39555444 MS.gene68668:CDS
AGAAGAGCGGGAAAGCTCCC+AGG 0.495370 2.3:+39558844 MS.gene68668:CDS
TTTAATGGAACGTGTGAGGC+AGG 0.496599 2.3:+39558147 MS.gene68668:CDS
AGTTTGCATTGCTCTCTGCT+TGG 0.497350 2.3:-39558051 None:intergenic
GGAAGAAGACAAAGCTAGGT+TGG 0.501618 2.3:+39561124 MS.gene68668:intron
TTTAGGAAGAAGACAAAGCT+AGG 0.501787 2.3:+39561120 MS.gene68668:intron
ATTCGGCGCTGATCCGGCAC+CGG 0.502759 2.3:-39555116 None:intergenic
GAAAACCCGGGATCGGAACC+GGG 0.504035 2.3:+39555237 MS.gene68668:CDS
TCACAAAACGAGGACGTAAG+AGG 0.506259 2.3:+39555199 MS.gene68668:CDS
CTACTACCATTCACCGGAGC+CGG 0.525885 2.3:+39555097 MS.gene68668:CDS
AGCAATGCAAACTTATATGA+AGG 0.526547 2.3:+39558061 MS.gene68668:CDS
GTGATGTATCTGGTTGTAAG+TGG 0.528480 2.3:-39555180 None:intergenic
AAAGATCTTTCACTTTCAGT+AGG 0.529421 2.3:-39558127 None:intergenic
GGTGGTGATAGTCTCAGCTT+TGG 0.534812 2.3:+39558094 MS.gene68668:CDS
ATCCGCGGAAGCTGATCGAC+GGG 0.535334 2.3:-39555376 None:intergenic
AGACAAAGCTAGGTTGGTCC+AGG 0.536981 2.3:+39561130 MS.gene68668:CDS
GTATCTCCTGGTGAAGGGAG+TGG 0.537968 2.3:+39558001 MS.gene68668:CDS
CCATTCACCGGAGCCGGTGC+CGG 0.539777 2.3:+39555103 MS.gene68668:CDS
CAGTCTCTACAAAGCTTGAC+CGG 0.543218 2.3:+39557871 MS.gene68668:CDS
ACAAGCCATAACAGCTTCCA+TGG 0.548095 2.3:-39557836 None:intergenic
GATAGAAGCTGATCGTAAAG+AGG 0.552473 2.3:-39555322 None:intergenic
GATCCGCGGAAGCTGATCGA+CGG 0.553108 2.3:-39555377 None:intergenic
ATTCTACGGAAGAGAAGAGC+GGG 0.553812 2.3:+39558832 MS.gene68668:CDS
TGCCAAATCACATGAAACTC+TGG 0.553931 2.3:-39561388 None:intergenic
CGTAAGAGGTATGAACATGA+TGG 0.558929 2.3:+39555213 MS.gene68668:CDS
ATTCTGTGTTGCTTTCGGCC+CGG 0.559067 2.3:-39555255 None:intergenic
TCACTTTCAGTAGGAACAAG+AGG 0.559140 2.3:-39558118 None:intergenic
TGAAGCTGTGCGTCGATCCG+CGG 0.565484 2.3:-39555391 None:intergenic
CCACCAAGCTTTCAAAAGGG+AGG 0.569465 2.3:-39558875 None:intergenic
TAATGGTGTTGTGGATGAAA+AGG 0.570805 2.3:+39555453 MS.gene68668:CDS
ACAGGTGTATCTCCTGGTGA+AGG 0.571753 2.3:+39557995 MS.gene68668:intron
CGCCCGTCGATCAGCTTCCG+CGG 0.571878 2.3:+39555374 MS.gene68668:CDS
ACTAATCCTTCGTCTTCCAC+TGG 0.572883 2.3:+39561218 MS.gene68668:CDS
TGAACATGATGGAGAAAACC+CGG 0.573901 2.3:+39555224 MS.gene68668:CDS
GCTTCAGCAGTCGCAGCGCG+TGG 0.581446 2.3:+39555408 MS.gene68668:CDS
AATTGATTTCATGAGAGAGA+TGG 0.582629 2.3:-39555021 None:intergenic
ACATGTCCGTGTTCATGCCA+TGG 0.585181 2.3:+39557819 MS.gene68668:CDS
TGATGGAGAAAACCCGGGAT+CGG 0.585256 2.3:+39555230 MS.gene68668:CDS
GTTGCACCACTCCCTTCACC+AGG 0.588826 2.3:-39558007 None:intergenic
GGGTTACAAGAGTAAGATTG+TGG 0.594567 2.3:+39558795 MS.gene68668:intron
GGAGGAAATTCTGCTGCCGT+AGG 0.594774 2.3:-39555159 None:intergenic
ACATAAGAGAAGAAATTCTA+CGG 0.596585 2.3:+39558818 MS.gene68668:CDS
TGAGACTATCACCACCATCA+AGG 0.601612 2.3:-39558087 None:intergenic
GCATGAACAGGTGTATCTCC+TGG 0.604904 2.3:+39557989 MS.gene68668:intron
CAGGTGTATCTCCTGGTGAA+GGG 0.604940 2.3:+39557996 MS.gene68668:intron
TCAGCAGTCGCAGCGCGTGG+TGG 0.605137 2.3:+39555411 MS.gene68668:CDS
TTGCCACCAAGCTTTCAAAA+GGG 0.611238 2.3:-39558878 None:intergenic
CAAAGACTACTACCATTCAC+CGG 0.619446 2.3:+39555091 MS.gene68668:CDS
AAAGGGAGGTTGTGTCACCT+GGG 0.629103 2.3:-39558861 None:intergenic
CAGCTTCCATGGCATGAACA+CGG 0.631221 2.3:-39557825 None:intergenic
ATAGAAGCTGATCGTAAAGA+GGG 0.632926 2.3:-39555321 None:intergenic
GATCTTTAATGGAACGTGTG+AGG 0.637290 2.3:+39558143 MS.gene68668:CDS
TTGGAGCCAGTGGAAGACGA+AGG 0.640820 2.3:-39561224 None:intergenic
GCTCCAAAACCAAACGCAAG+AGG 0.641070 2.3:+39561240 MS.gene68668:CDS
AGGGAGTGGTGCAACAATGT+CGG 0.641905 2.3:+39558015 MS.gene68668:CDS
TCAACAACGCTGTAAACCTA+CGG 0.675133 2.3:+39555143 MS.gene68668:CDS
ATGTATCTGGTTGTAAGTGG+AGG 0.678620 2.3:-39555177 None:intergenic
ACCAGATACATCACAAAACG+AGG 0.688090 2.3:+39555189 MS.gene68668:CDS
AATTCTACGGAAGAGAAGAG+CGG 0.693061 2.3:+39558831 MS.gene68668:CDS
AAGCAACACAGAATCATCAG+AGG 0.697069 2.3:+39555264 MS.gene68668:CDS
GAACATGATGGAGAAAACCC+GGG 0.707928 2.3:+39555225 MS.gene68668:CDS
TATGAAGGAAGCCTTGATGG+TGG 0.736950 2.3:+39558076 MS.gene68668:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAATAAAAAATATT+TGG + chr2.3:39556401-39556420 MS.gene68668:intron 0.0%
!! TAAAAAAAATTAATAAAAAT+TGG + chr2.3:39558976-39558995 MS.gene68668:intron 0.0%
!! TTAATTAATTATTAATATTA+TGG + chr2.3:39559126-39559145 MS.gene68668:intron 0.0%
!! CATTAAATAATTTATGTATT+TGG + chr2.3:39560726-39560745 MS.gene68668:intron 10.0%
!! TAAATAATAAAATTAGGTTT+GGG - chr2.3:39555510-39555529 None:intergenic 10.0%
!! TGATGTTAAATAATAAAATT+AGG - chr2.3:39555516-39555535 None:intergenic 10.0%
!! TTAAATAATAAAATTAGGTT+TGG - chr2.3:39555511-39555530 None:intergenic 10.0%
!! TTTATTGTTGAAATATAAAT+TGG - chr2.3:39557332-39557351 None:intergenic 10.0%
!!! GTATTTTTTTTATGAAATTT+TGG + chr2.3:39560263-39560282 MS.gene68668:intron 10.0%
!!! TATGAATTATTTAAAACTTT+GGG - chr2.3:39559341-39559360 None:intergenic 10.0%
!!! TTACTTGTATTTAAAATTAA+GGG + chr2.3:39560534-39560553 MS.gene68668:intron 10.0%
!!! TTATGAATTATTTAAAACTT+TGG - chr2.3:39559342-39559361 None:intergenic 10.0%
!!! TTCAAAATATACTAATTTTA+AGG - chr2.3:39559086-39559105 None:intergenic 10.0%
!!! TTTTTTTACCTTAAATATAA+GGG + chr2.3:39560018-39560037 MS.gene68668:intron 10.0%
!! AAAAGCTTAATCTTAAAATT+TGG - chr2.3:39557208-39557227 None:intergenic 15.0%
!! AAAATAAATCATCTCTAATA+TGG + chr2.3:39557362-39557381 MS.gene68668:intron 15.0%
!! AATGATGTATAATTAAAAAC+AGG - chr2.3:39559650-39559669 None:intergenic 15.0%
!! AATTAAAGCAAATAAATAAC+TGG + chr2.3:39561165-39561184 MS.gene68668:CDS 15.0%
!! ACGTATATATAGTATAAAAT+AGG - chr2.3:39558674-39558693 None:intergenic 15.0%
!! AGAAAAAAATTAAACATTAG+AGG - chr2.3:39557305-39557324 None:intergenic 15.0%
!! CATGTTATTAATGTTAATAA+AGG - chr2.3:39560123-39560142 None:intergenic 15.0%
!! TATTAAGTGAGTTTATAATT+GGG + chr2.3:39557131-39557150 MS.gene68668:intron 15.0%
!! TCAAATATAGAAAGAAATAT+AGG + chr2.3:39559242-39559261 MS.gene68668:intron 15.0%
!! TTAACATTCATATGTTATAT+TGG - chr2.3:39557619-39557638 None:intergenic 15.0%
!! TTTCAACAATAAATTGTTAA+TGG + chr2.3:39557339-39557358 MS.gene68668:intron 15.0%
!!! AAATTGTTTAAGAGTATAAT+TGG + chr2.3:39560360-39560379 MS.gene68668:intron 15.0%
!!! AATAAAAAATATTTGGTGTT+CGG + chr2.3:39556408-39556427 MS.gene68668:intron 15.0%
!!! ATAATTTATGTATTTGGTTT+AGG + chr2.3:39560732-39560751 MS.gene68668:intron 15.0%
!!! GTTACTTGTATTTAAAATTA+AGG + chr2.3:39560533-39560552 MS.gene68668:intron 15.0%
!!! GTTTTTTTACCTTAAATATA+AGG + chr2.3:39560017-39560036 MS.gene68668:intron 15.0%
!!! TAAAATCACTCATAATTTTT+TGG - chr2.3:39560091-39560110 None:intergenic 15.0%
!!! TTAAAATTAGTCATCTTTTT+AGG - chr2.3:39558465-39558484 None:intergenic 15.0%
!!! TTAATGATATTTTGCATTAA+TGG + chr2.3:39556553-39556572 MS.gene68668:intron 15.0%
!!! TTACCTTTATTTGAATTTTT+AGG - chr2.3:39559856-39559875 None:intergenic 15.0%
!!! TTTAAAATTAAGGGTATTTT+TGG + chr2.3:39560543-39560562 MS.gene68668:intron 15.0%
!! AAATTATATAATCTCATCCA+AGG + chr2.3:39559874-39559893 MS.gene68668:intron 20.0%
!! ACGATTGTAATACAAATATA+AGG - chr2.3:39557419-39557438 None:intergenic 20.0%
!! ATCAAAATATATACATCATC+CGG + chr2.3:39556748-39556767 MS.gene68668:intron 20.0%
!! ATGAATAGAATAAATTTGCA+TGG - chr2.3:39555556-39555575 None:intergenic 20.0%
!! CAAACAAAAATTTATGACAT+AGG + chr2.3:39556625-39556644 MS.gene68668:intron 20.0%
!! CATAAATTCCCTTATATTTA+AGG - chr2.3:39560029-39560048 None:intergenic 20.0%
!! CTAAATCAATAGATCAATAA+TGG - chr2.3:39559188-39559207 None:intergenic 20.0%
!! GCAAACAATAATCTTTATTA+TGG + chr2.3:39560334-39560353 MS.gene68668:intron 20.0%
!! GTATTAAGTGAGTTTATAAT+TGG + chr2.3:39557130-39557149 MS.gene68668:intron 20.0%
!! TAACGTTTGAAAATTATGAA+CGG + chr2.3:39560241-39560260 MS.gene68668:intron 20.0%
!! TAGTTAATGTCACAATATAT+GGG - chr2.3:39556437-39556456 None:intergenic 20.0%
!! TCGTAAAGTGATTTATAAAT+TGG + chr2.3:39560633-39560652 MS.gene68668:intron 20.0%
!! TCTACATTCATATGTTATAT+TGG - chr2.3:39557557-39557576 None:intergenic 20.0%
!! TGACCTAAAAATTCAAATAA+AGG + chr2.3:39559850-39559869 MS.gene68668:intron 20.0%
!! TTAATCAAAGAAAAAGGAAT+TGG + chr2.3:39561192-39561211 MS.gene68668:CDS 20.0%
!! TTAGTTAATGTCACAATATA+TGG - chr2.3:39556438-39556457 None:intergenic 20.0%
!! TTCAAATGTAAATAAAAGAG+AGG - chr2.3:39557484-39557503 None:intergenic 20.0%
!!! AAAAACTTAAATGACTTGTT+TGG - chr2.3:39558357-39558376 None:intergenic 20.0%
!!! AAAACTTAAATGACTTGTTT+GGG - chr2.3:39558356-39558375 None:intergenic 20.0%
!!! AAAAGATGACTAATTTTAAG+TGG + chr2.3:39558466-39558485 MS.gene68668:intron 20.0%
!!! AAAGATGACTAATTTTAAGT+GGG + chr2.3:39558467-39558486 MS.gene68668:intron 20.0%
!!! ATATAGGAGTATTAATAAAC+TGG + chr2.3:39559258-39559277 MS.gene68668:intron 20.0%
!!! ATTTTGCTTATAATAATGAC+CGG + chr2.3:39556879-39556898 MS.gene68668:intron 20.0%
!!! CTTACAAATTAGTTTTGTAT+GGG + chr2.3:39557166-39557185 MS.gene68668:intron 20.0%
!!! GTAAATTGTTTCTTGTAAAT+AGG - chr2.3:39560696-39560715 None:intergenic 20.0%
!!! TCAAAATTTTGTCTAGATTT+GGG + chr2.3:39555778-39555797 MS.gene68668:intron 20.0%
!!! TCTTACAAATTAGTTTTGTA+TGG + chr2.3:39557165-39557184 MS.gene68668:intron 20.0%
!!! TGATTTTTTTTCCTCTAATA+AGG + chr2.3:39556002-39556021 MS.gene68668:intron 20.0%
!!! TTATGTTTTTTCAATATGCA+GGG + chr2.3:39558775-39558794 MS.gene68668:intron 20.0%
!!! TTCAAAATTTTGTCTAGATT+TGG + chr2.3:39555777-39555796 MS.gene68668:intron 20.0%
!!! TTGTGACATTAACTAATTTT+TGG + chr2.3:39556442-39556461 MS.gene68668:intron 20.0%
!!! TTTATGTTTTTTCAATATGC+AGG + chr2.3:39558774-39558793 MS.gene68668:intron 20.0%
!!! TTTTTACTTTTCAATAGTAG+TGG + chr2.3:39561347-39561366 MS.gene68668:intron 20.0%
! AAACCATCAAATTAAGATTC+AGG - chr2.3:39556197-39556216 None:intergenic 25.0%
! AATAGGTCAAATGCATTTAA+AGG - chr2.3:39558657-39558676 None:intergenic 25.0%
! AATGTTCGAAGAAAAAGTAA+AGG - chr2.3:39556104-39556123 None:intergenic 25.0%
! ACATAAGAGAAGAAATTCTA+CGG + chr2.3:39558818-39558837 MS.gene68668:CDS 25.0%
! ACATTCATATGTTATATTGG+AGG - chr2.3:39557554-39557573 None:intergenic 25.0%
! ATAACTTATGTGGTTTGAAA+AGG + chr2.3:39560830-39560849 MS.gene68668:intron 25.0%
! ATACAAATATAAGGAAATGC+AGG - chr2.3:39557410-39557429 None:intergenic 25.0%
! ATATGAAATGACAATTGTCA+CGG - chr2.3:39558951-39558970 None:intergenic 25.0%
! ATGATCACACTAAATATGAT+AGG - chr2.3:39559446-39559465 None:intergenic 25.0%
! ATGTTCGAAGAAAAAGTAAA+GGG - chr2.3:39556103-39556122 None:intergenic 25.0%
! CATATTATAGATAGCATAGT+TGG - chr2.3:39558541-39558560 None:intergenic 25.0%
! CATTCATATGTTATATTGGA+GGG - chr2.3:39557553-39557572 None:intergenic 25.0%
! CATTCATTAAATGATGTATG+TGG + chr2.3:39556805-39556824 MS.gene68668:intron 25.0%
! CATTGAAAATTAAGTAGTGA+AGG - chr2.3:39559804-39559823 None:intergenic 25.0%
! CCTATAAAATATATACACCA+TGG - chr2.3:39558237-39558256 None:intergenic 25.0%
! GAAACGATTCAAAAACTAAA+AGG + chr2.3:39558569-39558588 MS.gene68668:intron 25.0%
! GATAGTTGAAACTTAATTAC+CGG - chr2.3:39557893-39557912 None:intergenic 25.0%
! GGAAAAACGAAAAACTTAAA+GGG + chr2.3:39558630-39558649 MS.gene68668:intron 25.0%
! GGTTCATTAATCAAAGAAAA+AGG + chr2.3:39561186-39561205 MS.gene68668:CDS 25.0%
! TGAAAGTGAAAGATCTTTAA+TGG + chr2.3:39558132-39558151 MS.gene68668:CDS 25.0%
! TGATCACACTAAATATGATA+GGG - chr2.3:39559445-39559464 None:intergenic 25.0%
! TTAAAACTTACAGTAGGATA+AGG - chr2.3:39558919-39558938 None:intergenic 25.0%
! TTCTACTATATGCTTACATT+GGG - chr2.3:39560924-39560943 None:intergenic 25.0%
! TTGATCTTAAAACTTACAGT+AGG - chr2.3:39558925-39558944 None:intergenic 25.0%
! TTGATTAAAGTAGTTGTAGT+GGG - chr2.3:39555588-39555607 None:intergenic 25.0%
! TTGCACATAGTTAGTTAATT+AGG - chr2.3:39555683-39555702 None:intergenic 25.0%
! TTTAACATGATTAGCATTCA+TGG - chr2.3:39561086-39561105 None:intergenic 25.0%
!! AAAAACTAAAAGGACTTGTT+TGG + chr2.3:39558579-39558598 MS.gene68668:intron 25.0%
!! AAAACTAAAAGGACTTGTTT+GGG + chr2.3:39558580-39558599 MS.gene68668:intron 25.0%
!! ACTTTAAAAAACAGTAAACG+AGG + chr2.3:39555891-39555910 MS.gene68668:intron 25.0%
!! CCATGGTGTATATATTTTAT+AGG + chr2.3:39558234-39558253 MS.gene68668:intron 25.0%
!! GTTTTGCTTATAATAATGAC+CGG - chr2.3:39556770-39556789 None:intergenic 25.0%
!! TTTTAATACTAGCGAAAAGA+CGG + chr2.3:39560181-39560200 MS.gene68668:intron 25.0%
!!! AAGACTTTTTTGTTGTTAGA+AGG - chr2.3:39559385-39559404 None:intergenic 25.0%
!!! AAGTGAACTATTTTTCTCAA+AGG + chr2.3:39559551-39559570 MS.gene68668:intron 25.0%
!!! AGATGAATTTTTAGTTAGCT+AGG - chr2.3:39561026-39561045 None:intergenic 25.0%
!!! AGTGAACTATTTTTCTCAAA+GGG + chr2.3:39559552-39559571 MS.gene68668:intron 25.0%
!!! ATTTTAACAAACTTCAAGGA+AGG - chr2.3:39559743-39559762 None:intergenic 25.0%
!!! GTCAACTTTTTCTTGTAATT+AGG + chr2.3:39560795-39560814 MS.gene68668:intron 25.0%
!!! GTTGATTTAACTTTTAGTGT+TGG + chr2.3:39557682-39557701 MS.gene68668:intron 25.0%
!!! TGACATTTTAACAAACTTCA+AGG - chr2.3:39559747-39559766 None:intergenic 25.0%
AAAGATCTTTCACTTTCAGT+AGG - chr2.3:39558130-39558149 None:intergenic 30.0%
AAAGTCTAATCAACAAACTC+CGG - chr2.3:39555876-39555895 None:intergenic 30.0%
AAATTTATGACATAGGACTG+TGG + chr2.3:39556632-39556651 MS.gene68668:intron 30.0%
AAGTTAACACCGTTTAAGTA+CGG - chr2.3:39559983-39560002 None:intergenic 30.0%
AATTGATCCTTGCAACAAAT+GGG - chr2.3:39556156-39556175 None:intergenic 30.0%
AATTTATGACATAGGACTGT+GGG + chr2.3:39556633-39556652 MS.gene68668:intron 30.0%
ACAAGAAAAAAGAGTCCATT+AGG - chr2.3:39561279-39561298 None:intergenic 30.0%
ACATATGAATGTAGAACCTA+CGG + chr2.3:39557562-39557581 MS.gene68668:intron 30.0%
AGCAATGCAAACTTATATGA+AGG + chr2.3:39558061-39558080 MS.gene68668:CDS 30.0%
AGTTTCAACATATACTTCCT+CGG - chr2.3:39559609-39559628 None:intergenic 30.0%
ATATACCCGCAAATTATTGA+TGG + chr2.3:39556273-39556292 MS.gene68668:intron 30.0%
ATATATATGCAATGCAACCA+TGG + chr2.3:39558217-39558236 MS.gene68668:intron 30.0%
ATTTACTCCATAGATGACAT+AGG - chr2.3:39559009-39559028 None:intergenic 30.0%
CAACAACATGAAAGAATCAT+AGG - chr2.3:39556987-39557006 None:intergenic 30.0%
CAACTACCATCAATAATTTG+CGG - chr2.3:39556282-39556301 None:intergenic 30.0%
CAAGAAAAAAGAGTCCATTA+GGG - chr2.3:39561278-39561297 None:intergenic 30.0%
CATCAAATTAAGATTCAGGT+CGG - chr2.3:39556193-39556212 None:intergenic 30.0%
GGAAAAAATGCAAAAAGCTA+GGG + chr2.3:39559904-39559923 MS.gene68668:intron 30.0%
GGGAAAAACGAAAAACTTAA+AGG + chr2.3:39558629-39558648 MS.gene68668:intron 30.0%
GGGAAAAACGAAAAACTTAA+AGG - chr2.3:39558648-39558629 None:intergenic 30.0%
GTAGATACGTAATAGATTGA+CGG - chr2.3:39556963-39556982 None:intergenic 30.0%
GTTCTACTATATGCTTACAT+TGG - chr2.3:39560925-39560944 None:intergenic 30.0%
GTTGATTAAAGTAGTTGTAG+TGG - chr2.3:39555589-39555608 None:intergenic 30.0%
GTTGTTTAGTTAAACCTCAA+AGG + chr2.3:39560048-39560067 MS.gene68668:intron 30.0%
TAAGCAAAACTTTGCATGTT+AGG + chr2.3:39556780-39556799 MS.gene68668:intron 30.0%
TATAGGTCAAATGCATCTAA+AGG + chr2.3:39558251-39558270 MS.gene68668:intron 30.0%
TATTTGAGAGAGAATTACGA+GGG - chr2.3:39560891-39560910 None:intergenic 30.0%
TGATTAAAGTAGTTGTAGTG+GGG - chr2.3:39555587-39555606 None:intergenic 30.0%
TGGAAAAAATGCAAAAAGCT+AGG + chr2.3:39559903-39559922 MS.gene68668:intron 30.0%
TTATTTGAGAGAGAATTACG+AGG - chr2.3:39560892-39560911 None:intergenic 30.0%
TTTAATACTAGCGAAAAGAC+GGG + chr2.3:39560182-39560201 MS.gene68668:intron 30.0%
TTTCTTGAAAATACCCTCAT+GGG - chr2.3:39559523-39559542 None:intergenic 30.0%
TTTGATCTTTCCTGAATTTC+CGG + chr2.3:39555854-39555873 MS.gene68668:intron 30.0%
! AAACTCGTGAATGTACTTTT+AGG + chr2.3:39561103-39561122 MS.gene68668:intron 30.0%
! AACTACCATCAATAATTTGC+GGG - chr2.3:39556281-39556300 None:intergenic 30.0%
! AATTGATTTCATGAGAGAGA+TGG - chr2.3:39555024-39555043 None:intergenic 30.0%
! ATTGACGGATGGAAAATATA+TGG - chr2.3:39556948-39556967 None:intergenic 30.0%
! CATCTAAGATGAAGATCTAA+AGG - chr2.3:39556473-39556492 None:intergenic 30.0%
! CTTTTTCTTGTAATTAGGAC+CGG + chr2.3:39560800-39560819 MS.gene68668:intron 30.0%
! GAAACTTAAAGGACTTGTTT+GGG - chr2.3:39558327-39558346 None:intergenic 30.0%
! TGAAACTTAAAGGACTTGTT+TGG - chr2.3:39558328-39558347 None:intergenic 30.0%
! TGGCTTTTTATCTTTGCAAA+TGG - chr2.3:39557957-39557976 None:intergenic 30.0%
! TTCATGTTGTTGTTGTAAGT+GGG + chr2.3:39556995-39557014 MS.gene68668:intron 30.0%
! TTGTTTCTTGTAAATAGGAC+CGG - chr2.3:39560691-39560710 None:intergenic 30.0%
! TTTCAAACAAGTCCTTTTAG+AGG + chr2.3:39558383-39558402 MS.gene68668:intron 30.0%
! TTTCATGTTGTTGTTGTAAG+TGG + chr2.3:39556994-39557013 MS.gene68668:intron 30.0%
! TTTTCTTGAAAATACCCTCA+TGG - chr2.3:39559524-39559543 None:intergenic 30.0%
! TTTTTCTCCTATGTCATCTA+TGG + chr2.3:39558999-39559018 MS.gene68668:intron 30.0%
!! ACTAATTTTAAGTGGGTGTT+AGG + chr2.3:39558474-39558493 MS.gene68668:intron 30.0%
!! ATCTTTTTAGGCATGACAAA+TGG - chr2.3:39558453-39558472 None:intergenic 30.0%
!! TAATTAGTTTGTCCTGACTT+AGG + chr2.3:39556056-39556075 MS.gene68668:intron 30.0%
!! TTCATTTTCAACGTTGATTG+AGG + chr2.3:39556331-39556350 MS.gene68668:intron 30.0%
!!! CATTTTTTCCAAAAACTCCT+TGG - chr2.3:39559894-39559913 None:intergenic 30.0%
!!! TTGGGACTTTTGAAACTTAA+AGG + chr2.3:39558598-39558617 MS.gene68668:intron 30.0%
!!! TTGGGACTTTTGAAACTTAA+AGG - chr2.3:39558617-39558598 None:intergenic 30.0%
!!! TTTTGATAGTGTGAATCAGA+AGG - chr2.3:39557030-39557049 None:intergenic 30.0%
!!! TTTTTTGATACGCATGAAAG+TGG - chr2.3:39559676-39559695 None:intergenic 30.0%
AAAAAACAGTAAACGAGGAG+AGG + chr2.3:39555896-39555915 MS.gene68668:intron 35.0%
AAACCAGTAACGTATACGAA+GGG - chr2.3:39556248-39556267 None:intergenic 35.0%
AAAGGAGCTTGATCAATTCA+TGG + chr2.3:39555471-39555490 MS.gene68668:CDS 35.0%
AACCCAAAAATGTGCTGAAA+GGG + chr2.3:39560578-39560597 MS.gene68668:intron 35.0%
AACTGTTGCTCTTCATTGAA+TGG - chr2.3:39555052-39555071 None:intergenic 35.0%
AATAAAAAGAGCGGAAAGAC+GGG - chr2.3:39560217-39560236 None:intergenic 35.0%
AATGCAGGAAACTTGAATGT+AGG - chr2.3:39557395-39557414 None:intergenic 35.0%
AATTACACTTACCTCCTTTG+AGG - chr2.3:39560065-39560084 None:intergenic 35.0%
ATACGTAATAGATTGACGGA+TGG - chr2.3:39556959-39556978 None:intergenic 35.0%
ATAGAAGCTGATCGTAAAGA+GGG - chr2.3:39555324-39555343 None:intergenic 35.0%
ATGATTAGCATTCATGGAAG+AGG - chr2.3:39561080-39561099 None:intergenic 35.0%
ATGCAGGAAACTTGAATGTA+GGG - chr2.3:39557394-39557413 None:intergenic 35.0%
ATTGATCCTTGCAACAAATG+GGG - chr2.3:39556155-39556174 None:intergenic 35.0%
ATTTATGACATAGGACTGTG+GGG + chr2.3:39556634-39556653 MS.gene68668:intron 35.0%
CAATAAAAAGAGCGGAAAGA+CGG - chr2.3:39560218-39560237 None:intergenic 35.0%
CAATACAAAGCAGACATACT+TGG + chr2.3:39555295-39555314 MS.gene68668:CDS 35.0%
CAATTGATCCTTGCAACAAA+TGG - chr2.3:39556157-39556176 None:intergenic 35.0%
CACAACCATCATAACTTAAG+AGG + chr2.3:39559927-39559946 MS.gene68668:intron 35.0%
CACTAAAATTCAGTATCACG+AGG - chr2.3:39556679-39556698 None:intergenic 35.0%
CATCATCATCATCCTCTAAA+AGG - chr2.3:39558398-39558417 None:intergenic 35.0%
CGTTATTAATTCACCAGTCA+TGG - chr2.3:39560987-39561006 None:intergenic 35.0%
CTCCTTGATCATAACTAGTA+CGG - chr2.3:39560960-39560979 None:intergenic 35.0%
CTTTGCCTCTTAAGTTATGA+TGG - chr2.3:39559935-39559954 None:intergenic 35.0%
GAAACTTAAAGGACCACTTT+GGG + chr2.3:39558609-39558628 MS.gene68668:intron 35.0%
GATAACGTTATTACATCCTC+CGG - chr2.3:39556901-39556920 None:intergenic 35.0%
GTGTCCCATTAGAAAATAGA+GGG - chr2.3:39559778-39559797 None:intergenic 35.0%
GTTTAGTTAAACCTCAAAGG+AGG + chr2.3:39560051-39560070 MS.gene68668:intron 35.0%
TCTCACTAACCGTACTTAAA+CGG + chr2.3:39559971-39559990 MS.gene68668:intron 35.0%
TGAAACTTAAAGGACCACTT+GGG - chr2.3:39558627-39558608 None:intergenic 35.0%
TGAAACTTAAAGGACCACTT+TGG + chr2.3:39558608-39558627 MS.gene68668:intron 35.0%
TGAACTGAATGTAGAACCTA+CGG + chr2.3:39557500-39557519 MS.gene68668:intron 35.0%
TGTCCCATTAGAAAATAGAG+GGG - chr2.3:39559777-39559796 None:intergenic 35.0%
TGTGTCCCATTAGAAAATAG+AGG - chr2.3:39559779-39559798 None:intergenic 35.0%
TTAATTGAAGTCCTGTTTCC+TGG - chr2.3:39561151-39561170 None:intergenic 35.0%
TTATATGAAGGAAGCCTTGA+TGG + chr2.3:39558073-39558092 MS.gene68668:CDS 35.0%
TTATCTTTGCAAATGGTACG+TGG - chr2.3:39557950-39557969 None:intergenic 35.0%
TTGAAACTTAAAGGACCACT+TGG - chr2.3:39558626-39558607 None:intergenic 35.0%
TTGCTTATAATAATGACCGG+AGG + chr2.3:39556882-39556901 MS.gene68668:intron 35.0%
TTTAGGAAGAAGACAAAGCT+AGG + chr2.3:39561120-39561139 MS.gene68668:intron 35.0%
! AAGTACTCTTCACTTGCTAA+TGG + chr2.3:39555436-39555455 MS.gene68668:CDS 35.0%
! AATCTCATCCAAGGAGTTTT+TGG + chr2.3:39559883-39559902 MS.gene68668:intron 35.0%
! ACTTAAACGGTGTTAACTTG+AGG + chr2.3:39559984-39560003 MS.gene68668:intron 35.0%
! CGACCTGAATCTTAATTTGA+TGG + chr2.3:39556191-39556210 MS.gene68668:intron 35.0%
! CGCAAATTATTGATGGTAGT+TGG + chr2.3:39556280-39556299 MS.gene68668:intron 35.0%
! CTTAAACGGTGTTAACTTGA+GGG + chr2.3:39559985-39560004 MS.gene68668:intron 35.0%
! CTTTTGTTGAATGAAATCCG+AGG + chr2.3:39559589-39559608 MS.gene68668:intron 35.0%
! GACTCTCTTTTCCTTATTAG+AGG - chr2.3:39556016-39556035 None:intergenic 35.0%
! TGTTTTCAAAATACTCCCTC+CGG + chr2.3:39560669-39560688 MS.gene68668:intron 35.0%
! TTAAACGGTGTTAACTTGAG+GGG + chr2.3:39559986-39560005 MS.gene68668:intron 35.0%
! TTTATTCCCCATTTGTTGCA+AGG + chr2.3:39556146-39556165 MS.gene68668:intron 35.0%
!! GTTTTTCGTTTTTCCCAAAG+TGG - chr2.3:39558625-39558644 None:intergenic 35.0%
!! TAATGGTGTTGTGGATGAAA+AGG + chr2.3:39555453-39555472 MS.gene68668:CDS 35.0%
!! TATTTTTCTCAAAGGGTGTG+AGG + chr2.3:39559559-39559578 MS.gene68668:intron 35.0%
!! TGATGATTCTGTGTTGCTTT+CGG - chr2.3:39555263-39555282 None:intergenic 35.0%
!! TTTTTAGGCATGACAAATGG+TGG - chr2.3:39558450-39558469 None:intergenic 35.0%
!!! GGTGAGTTTTATTTCCCTAA+TGG + chr2.3:39561261-39561280 MS.gene68668:intron 35.0%
AACCAGTAACGTATACGAAG+GGG - chr2.3:39556247-39556266 None:intergenic 40.0%
AAGCAACACAGAATCATCAG+AGG + chr2.3:39555264-39555283 MS.gene68668:CDS 40.0%
AATAATGCCCAGCAACATCA+AGG - chr2.3:39561055-39561074 None:intergenic 40.0%
AATGGAACAAGTTCCCATGA+GGG + chr2.3:39559507-39559526 MS.gene68668:intron 40.0%
AATTCTACGGAAGAGAAGAG+CGG + chr2.3:39558831-39558850 MS.gene68668:CDS 40.0%
ACCAGATACATCACAAAACG+AGG + chr2.3:39555189-39555208 MS.gene68668:CDS 40.0%
ACCCAAAAATGTGCTGAAAG+GGG + chr2.3:39560579-39560598 MS.gene68668:intron 40.0%
ACTGTGGGGTAATACTTCAA+GGG + chr2.3:39556648-39556667 MS.gene68668:intron 40.0%
AGAACCTACGGTTGAAATCA+AGG + chr2.3:39557512-39557531 MS.gene68668:intron 40.0%
AGTAAACGAGGAGAGGATAA+TGG + chr2.3:39555903-39555922 MS.gene68668:intron 40.0%
ATGTATCTGGTTGTAAGTGG+AGG - chr2.3:39555180-39555199 None:intergenic 40.0%
ATTGCCACCAAGCTTTCAAA+AGG - chr2.3:39558882-39558901 None:intergenic 40.0%
CAAACCAGTAACGTATACGA+AGG - chr2.3:39556249-39556268 None:intergenic 40.0%
CAAAGACTACTACCATTCAC+CGG + chr2.3:39555091-39555110 MS.gene68668:CDS 40.0%
CAACCCAAAAATGTGCTGAA+AGG + chr2.3:39560577-39560596 MS.gene68668:intron 40.0%
CACATAAGTTATACTCCCTC+CGG - chr2.3:39560822-39560841 None:intergenic 40.0%
CGTTAGCGCAATAAAAAGAG+CGG - chr2.3:39560226-39560245 None:intergenic 40.0%
CTCATCTTTGGTACCAAATC+TGG - chr2.3:39558502-39558521 None:intergenic 40.0%
GAAACTTAAAGGACCACTTG+GGG - chr2.3:39558298-39558317 None:intergenic 40.0%
GAACCTACGGTTGAAATCAA+GGG + chr2.3:39557513-39557532 MS.gene68668:intron 40.0%
GATAGAAGCTGATCGTAAAG+AGG - chr2.3:39555325-39555344 None:intergenic 40.0%
GATCTTTAATGGAACGTGTG+AGG + chr2.3:39558143-39558162 MS.gene68668:CDS 40.0%
GGGTTACAAGAGTAAGATTG+TGG + chr2.3:39558795-39558814 MS.gene68668:intron 40.0%
GTCCCATTAGAAAATAGAGG+GGG - chr2.3:39559776-39559795 None:intergenic 40.0%
GTCCGTACTAGTTATGATCA+AGG + chr2.3:39560955-39560974 MS.gene68668:intron 40.0%
GTGATGTATCTGGTTGTAAG+TGG - chr2.3:39555183-39555202 None:intergenic 40.0%
GTTCATGCATGCATCATGTA+TGG - chr2.3:39557977-39557996 None:intergenic 40.0%
TAAAACTCACCTCTTGCGTT+TGG - chr2.3:39561252-39561271 None:intergenic 40.0%
TAATGGAACAAGTTCCCATG+AGG + chr2.3:39559506-39559525 MS.gene68668:intron 40.0%
TACATGATGCATGCATGAAC+AGG + chr2.3:39557977-39557996 MS.gene68668:intron 40.0%
TACGGTTGAAATCAAGGGTA+GGG + chr2.3:39557518-39557537 MS.gene68668:intron 40.0%
TCAACAAACTCCGGAAATTC+AGG - chr2.3:39555867-39555886 None:intergenic 40.0%
TCAACAACGCTGTAAACCTA+CGG + chr2.3:39555143-39555162 MS.gene68668:CDS 40.0%
TCACTTTCAGTAGGAACAAG+AGG - chr2.3:39558121-39558140 None:intergenic 40.0%
TGCTTCCTTGAACTCATCTT+TGG - chr2.3:39558514-39558533 None:intergenic 40.0%
TGGTACCAAAGATGAGTTCA+AGG + chr2.3:39558506-39558525 MS.gene68668:intron 40.0%
TTCTTGTAAATAGGACCGGA+GGG - chr2.3:39560687-39560706 None:intergenic 40.0%
TTCTTGTAATTAGGACCGGA+GGG + chr2.3:39560804-39560823 MS.gene68668:intron 40.0%
TTGCCACCAAGCTTTCAAAA+GGG - chr2.3:39558881-39558900 None:intergenic 40.0%
TTTCTTGTAAATAGGACCGG+AGG - chr2.3:39560688-39560707 None:intergenic 40.0%
TTTCTTGTAATTAGGACCGG+AGG + chr2.3:39560803-39560822 MS.gene68668:intron 40.0%
! ACACCCCCTCTATTTTCTAA+TGG + chr2.3:39559770-39559789 MS.gene68668:intron 40.0%
! ACCCCTTTCAGCACATTTTT+GGG - chr2.3:39560583-39560602 None:intergenic 40.0%
! CACCCCCTCTATTTTCTAAT+GGG + chr2.3:39559771-39559790 MS.gene68668:intron 40.0%
! CGTAAGAGGTATGAACATGA+TGG + chr2.3:39555213-39555232 MS.gene68668:CDS 40.0%
! GTTCTTTAAAAGCACAGAGC+AGG - chr2.3:39557789-39557808 None:intergenic 40.0%
! TACCCCTTTCAGCACATTTT+TGG - chr2.3:39560584-39560603 None:intergenic 40.0%
! TCCTCGTTTTGTGATGTATC+TGG - chr2.3:39555193-39555212 None:intergenic 40.0%
! TGAACATGATGGAGAAAACC+CGG + chr2.3:39555224-39555243 MS.gene68668:CDS 40.0%
! TTAATGGACACGTCATCATC+TGG + chr2.3:39556569-39556588 MS.gene68668:intron 40.0%
! TTCACTTGCTAATGGTGTTG+TGG + chr2.3:39555444-39555463 MS.gene68668:CDS 40.0%
!! GTTTTTCGTTTTTCCCCAAG+TGG + chr2.3:39558282-39558301 MS.gene68668:intron 40.0%
ACAAGCCATAACAGCTTCCA+TGG - chr2.3:39557839-39557858 None:intergenic 45.0%
ACAGCGTTGTTGAGCCAATT+CGG - chr2.3:39555136-39555155 None:intergenic 45.0%
ACTAATCCTTCGTCTTCCAC+TGG + chr2.3:39561218-39561237 MS.gene68668:CDS 45.0%
AGTTTGCATTGCTCTCTGCT+TGG - chr2.3:39558054-39558073 None:intergenic 45.0%
ATCAAGGAGACAACCATGAC+TGG + chr2.3:39560971-39560990 MS.gene68668:intron 45.0%
ATTCTACGGAAGAGAAGAGC+GGG + chr2.3:39558832-39558851 MS.gene68668:CDS 45.0%
CAGTCTCTACAAAGCTTGAC+CGG + chr2.3:39557871-39557890 MS.gene68668:CDS 45.0%
CTACCCTTGATTTCAACCGT+AGG - chr2.3:39557519-39557538 None:intergenic 45.0%
CTACGGTTGAAATCAAGGGT+AGG + chr2.3:39557517-39557536 MS.gene68668:intron 45.0%
GACTGTGGGGTAATACTTCA+AGG + chr2.3:39556647-39556666 MS.gene68668:intron 45.0%
GCAAATGGTACGTGGATGAT+TGG - chr2.3:39557942-39557961 None:intergenic 45.0%
GGAAGAAGACAAAGCTAGGT+TGG + chr2.3:39561124-39561143 MS.gene68668:intron 45.0%
GGTGGCAATCACACTCTAAA+TGG + chr2.3:39558893-39558912 MS.gene68668:CDS 45.0%
GTAACGTATACGAAGGGGAA+AGG - chr2.3:39556242-39556261 None:intergenic 45.0%
GTTGAAGCACGAGCTAAAAC+AGG + chr2.3:39558171-39558190 MS.gene68668:CDS 45.0%
TACGCAACCTTGATGTTGCT+GGG + chr2.3:39561045-39561064 MS.gene68668:intron 45.0%
TATGAAGGAAGCCTTGATGG+TGG + chr2.3:39558076-39558095 MS.gene68668:CDS 45.0%
TCACAAAACGAGGACGTAAG+AGG + chr2.3:39555199-39555218 MS.gene68668:CDS 45.0%
TCATGCCATGGAAGCTGTTA+TGG + chr2.3:39557831-39557850 MS.gene68668:CDS 45.0%
TGAGACTATCACCACCATCA+AGG - chr2.3:39558090-39558109 None:intergenic 45.0%
TTCCCCTTCGTATACGTTAC+TGG + chr2.3:39556242-39556261 MS.gene68668:intron 45.0%
TTTAATGGAACGTGTGAGGC+AGG + chr2.3:39558147-39558166 MS.gene68668:CDS 45.0%
! CGGAGGGAGTATAACTTATG+TGG + chr2.3:39560820-39560839 MS.gene68668:intron 45.0%
! CTTTTCAATAGTAGTGGCGC+AGG + chr2.3:39561353-39561372 MS.gene68668:intron 45.0%
! GAACATGATGGAGAAAACCC+GGG + chr2.3:39555225-39555244 MS.gene68668:CDS 45.0%
! TGGAAGCTGTTATGGCTTGT+TGG + chr2.3:39557839-39557858 MS.gene68668:CDS 45.0%
!! CAACCTCCCTTTTGAAAGCT+TGG + chr2.3:39558872-39558891 MS.gene68668:CDS 45.0%
!! GGAAGCTGTTATGGCTTGTT+GGG + chr2.3:39557840-39557859 MS.gene68668:CDS 45.0%
!! TCACCTCTTGCGTTTGGTTT+TGG - chr2.3:39561246-39561265 None:intergenic 45.0%
!! TGAAATAAAAATAAAAAATA+AGG - chr2.3:39555815-39555834 None:intergenic 5.0%
!!! AATAATACTTTTAATATTAA+TGG + chr2.3:39559489-39559508 MS.gene68668:intron 5.0%
!!! TTATACTTTTTAAATAATAA+AGG + chr2.3:39560423-39560442 MS.gene68668:intron 5.0%
!!! TTTTATTTTTAAAAAAATGT+TGG + chr2.3:39555946-39555965 MS.gene68668:intron 5.0%
AAAAGGGAGGTTGTGTCACC+TGG - chr2.3:39558865-39558884 None:intergenic 50.0%
AAAGGGAGGTTGTGTCACCT+GGG - chr2.3:39558864-39558883 None:intergenic 50.0%
ACAGGTGTATCTCCTGGTGA+AGG + chr2.3:39557995-39558014 MS.gene68668:intron 50.0%
ACATGTCCGTGTTCATGCCA+TGG + chr2.3:39557819-39557838 MS.gene68668:CDS 50.0%
AGGGAGTGGTGCAACAATGT+CGG + chr2.3:39558015-39558034 MS.gene68668:CDS 50.0%
CAACTGCAGCATCCTAAGTC+AGG - chr2.3:39556071-39556090 None:intergenic 50.0%
CAGCTTCCATGGCATGAACA+CGG - chr2.3:39557828-39557847 None:intergenic 50.0%
CAGGTGTATCTCCTGGTGAA+GGG + chr2.3:39557996-39558015 MS.gene68668:intron 50.0%
CCACCAAGCTTTCAAAAGGG+AGG - chr2.3:39558878-39558897 None:intergenic 50.0%
CTACGCAACCTTGATGTTGC+TGG + chr2.3:39561044-39561063 MS.gene68668:intron 50.0%
CTTAGGATGCTGCAGTTGTG+AGG + chr2.3:39556073-39556092 MS.gene68668:intron 50.0%
GCATGAACAGGTGTATCTCC+TGG + chr2.3:39557989-39558008 MS.gene68668:intron 50.0%
GCTCCAAAACCAAACGCAAG+AGG + chr2.3:39561240-39561259 MS.gene68668:CDS 50.0%
GGTGGTGATAGTCTCAGCTT+TGG + chr2.3:39558094-39558113 MS.gene68668:CDS 50.0%
TGATGGAGAAAACCCGGGAT+CGG + chr2.3:39555230-39555249 MS.gene68668:CDS 50.0%
TGGGTGTTAGGAGCCAGATT+TGG + chr2.3:39558486-39558505 MS.gene68668:intron 50.0%
!! AGACAAAGCTAGGTTGGTCC+AGG + chr2.3:39561130-39561149 MS.gene68668:CDS 50.0%
!! ATTCTGTGTTGCTTTCGGCC+CGG - chr2.3:39555258-39555277 None:intergenic 50.0%
!! CCTCCCTTTTGAAAGCTTGG+TGG + chr2.3:39558875-39558894 MS.gene68668:CDS 50.0%
!! TGTTATGGCTTGTTGGGAGC+TGG + chr2.3:39557846-39557865 MS.gene68668:CDS 50.0%
AAAGAGCGGAAAGACGGGCA+CGG - chr2.3:39560212-39560231 None:intergenic 55.0%
AGAAAACCCGGGATCGGAAC+CGG + chr2.3:39555236-39555255 MS.gene68668:CDS 55.0%
CTACTACCATTCACCGGAGC+CGG + chr2.3:39555097-39555116 MS.gene68668:CDS 55.0%
GGAGGAAATTCTGCTGCCGT+AGG - chr2.3:39555162-39555181 None:intergenic 55.0%
GTATCTCCTGGTGAAGGGAG+TGG + chr2.3:39558001-39558020 MS.gene68668:CDS 55.0%
TTGGAGCCAGTGGAAGACGA+AGG - chr2.3:39561227-39561246 None:intergenic 55.0%
!! GCTAGGTTGGTCCAGGAAAC+AGG + chr2.3:39561137-39561156 MS.gene68668:CDS 55.0%
!!! GCGTTTGGTTTTGGAGCCAG+TGG - chr2.3:39561237-39561256 None:intergenic 55.0%
AGAAGAGCGGGAAAGCTCCC+AGG + chr2.3:39558844-39558863 MS.gene68668:CDS 60.0%
ATCCGCGGAAGCTGATCGAC+GGG - chr2.3:39555379-39555398 None:intergenic 60.0%
GAAAACCCGGGATCGGAACC+GGG + chr2.3:39555237-39555256 MS.gene68668:CDS 60.0%
GATCCGCGGAAGCTGATCGA+CGG - chr2.3:39555380-39555399 None:intergenic 60.0%
GTTGCACCACTCCCTTCACC+AGG - chr2.3:39558010-39558029 None:intergenic 60.0%
! TGAAGCTGTGCGTCGATCCG+CGG - chr2.3:39555394-39555413 None:intergenic 60.0%
!! GAGCCAATTCGGCGCTGATC+CGG - chr2.3:39555125-39555144 None:intergenic 60.0%
TTTCGGCCCGGTTCCGATCC+CGG - chr2.3:39555246-39555265 None:intergenic 65.0%
! GTGCCGGATCAGCGCCGAAT+TGG + chr2.3:39555119-39555138 MS.gene68668:CDS 65.0%
!! ATTCGGCGCTGATCCGGCAC+CGG - chr2.3:39555119-39555138 None:intergenic 65.0%
CCATTCACCGGAGCCGGTGC+CGG + chr2.3:39555103-39555122 MS.gene68668:CDS 70.0%
CGCCCGTCGATCAGCTTCCG+CGG + chr2.3:39555374-39555393 MS.gene68668:CDS 70.0%
GCTTCAGCAGTCGCAGCGCG+TGG + chr2.3:39555408-39555427 MS.gene68668:CDS 70.0%
TCAGCAGTCGCAGCGCGTGG+TGG + chr2.3:39555411-39555430 MS.gene68668:CDS 70.0%
TTCGGCCCGGTTCCGATCCC+GGG - chr2.3:39555245-39555264 None:intergenic 70.0%
!! CCGGCACCGGCTCCGGTGAA+TGG - chr2.3:39555106-39555125 None:intergenic 75.0%
!! CGCTGATCCGGCACCGGCTC+CGG - chr2.3:39555113-39555132 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 39555004 39561403 39555004 ID=MS.gene68668
chr2.3 mRNA 39555004 39561403 39555004 ID=MS.gene68668.t1;Parent=MS.gene68668
chr2.3 exon 39555004 39555492 39555004 ID=MS.gene68668.t1.exon1;Parent=MS.gene68668.t1
chr2.3 CDS 39555004 39555492 39555004 ID=cds.MS.gene68668.t1;Parent=MS.gene68668.t1
chr2.3 exon 39557772 39557892 39557772 ID=MS.gene68668.t1.exon2;Parent=MS.gene68668.t1
chr2.3 CDS 39557772 39557892 39557772 ID=cds.MS.gene68668.t1;Parent=MS.gene68668.t1
chr2.3 exon 39557999 39558192 39557999 ID=MS.gene68668.t1.exon3;Parent=MS.gene68668.t1
chr2.3 CDS 39557999 39558192 39557999 ID=cds.MS.gene68668.t1;Parent=MS.gene68668.t1
chr2.3 exon 39558796 39558927 39558796 ID=MS.gene68668.t1.exon4;Parent=MS.gene68668.t1
chr2.3 CDS 39558796 39558927 39558796 ID=cds.MS.gene68668.t1;Parent=MS.gene68668.t1
chr2.3 exon 39561125 39561261 39561125 ID=MS.gene68668.t1.exon5;Parent=MS.gene68668.t1
chr2.3 CDS 39561125 39561261 39561125 ID=cds.MS.gene68668.t1;Parent=MS.gene68668.t1
chr2.3 exon 39561364 39561403 39561364 ID=MS.gene68668.t1.exon6;Parent=MS.gene68668.t1
chr2.3 CDS 39561364 39561403 39561364 ID=cds.MS.gene68668.t1;Parent=MS.gene68668.t1
Gene Sequence

>MS.gene68668

ATGGCTTTTCATCACGACCATCTCTCTCATGAAATCAATTTTCAACCATTCAATGAAGAGCAACAGTTAAATCAAAGCAGAGATATGCAAAGACTACTACCATTCACCGGAGCCGGTGCCGGATCAGCGCCGAATTGGCTCAACAACGCTGTAAACCTACGGCAGCAGAATTTCCTCCACTTACAACCAGATACATCACAAAACGAGGACGTAAGAGGTATGAACATGATGGAGAAAACCCGGGATCGGAACCGGGCCGAAAGCAACACAGAATCATCAGAGGAGTTATCACAATACAAAGCAGACATACTTGGACACCCTCTTTACGATCAGCTTCTATCTGCTCATGTTTCTTGTCTGCGAATTGCTACGCCCGTCGATCAGCTTCCGCGGATCGACGCACAGCTTCAGCAGTCGCAGCGCGTGGTGGATAAGTACTCTTCACTTGCTAATGGTGTTGTGGATGAAAAGGAGCTTGATCAATTCATGGTTAGTTACAACAACCCAAACCTAATTTTATTATTTAACATCAATTATATATCTTCTTATCCATGCAAATTTATTCTATTCATCTCTATTACCCCACTACAACTACTTTAATCAACTTTTCAATGATAGATTTGTATGATTTTATTTATGTCTCTCTTTATTTCTTTGTTGTTGTTGTCGCTTTTAACCTAATTAACTAACTATGTGCAATAACAATACTGCAATAGTATTAAGCTTCTTTACTATTCTAATAATTAAGCTTCTTTGTGATTTTAATATTTTTATTCAAAATTTTGTCTAGATTTGGGTGCTTTTGTTTCCTTATTTTTTATTTTTATTTCACTCTTATTTTGTGAAACTCTTTGATCTTTCCTGAATTTCCGGAGTTTGTTGATTAGACTTTAAAAAACAGTAAACGAGGAGAGGATAATGGAAAAAGTAACATTCTTTTTATTTTATTTTTAAAAAAATGTTGGACTGTAGTAGTACGAATTGTGAGTAAATGAATCTGATTTTTTTTCCTCTAATAAGGAAAAGAGAGTCATTAATAGAGTAAATGAGTGTAATTAGTTTGTCCTGACTTAGGATGCTGCAGTTGTGAGGTTTTCCCTTTACTTTTTCTTCGAACATTTTGATTAAAGTTGTGAAAAATATTTATTCCCCATTTGTTGCAAGGATCAATTGTTTACTCTTTTTGCCGACCTGAATCTTAATTTGATGGTTTATAAGTTCTTTAATTTTATCAACCTTTCCCCTTCGTATACGTTACTGGTTTGATTAATATACCCGCAAATTATTGATGGTAGTTGGTAAATTTAATTGTTTATACATTAATTGATTCATTTTCAACGTTGATTGAGGACTTTGTTAAATAAGAAACAGAAAATAATCTAGTCACTAAAAATATAAAAATAAAATAAAAAATATTTGGTGTTCGGTAACCCATATATTGTGACATTAACTAATTTTTGGTTCAACCTTTAGATCTTCATCTTAGATGAATAAAACTGTGTCTGTGACTGTGACTTGCTTGCGAGTAAATTGTTTTCATTTTGATTTCTTAATGATATTTTGCATTAATGGACACGTCATCATCTGGCTTATTATTGATTCTGTTAATTTTTTTTACAAACAAACAAAAATTTATGACATAGGACTGTGGGGTAATACTTCAAGGGTTGCACCTCGTGATACTGAATTTTAGTGATATTGATGATATTGTGTTTATCTCTCTCAGTTATAATCATTCTCTTTCATCAAAATATATACATCATCCGGTCATTATTATAAGCAAAACTTTGCATGTTAGGTTCATTCATTAAATGATGTATGTGGTCTATAATAAAGATCATATACAACATTAATTGAATGAATCTAAAATGCAAAATTTTGCTTATAATAATGACCGGAGGATGTAATAACGTTATCAATGTCATAAAAACTCAATGTTATCCATATATTTTCCATCCGTCAATCTATTACGTATCTACTCCTATGATTCTTTCATGTTGTTGTTGTAAGTGGGTAATTTCGTCCTTCTGATTCACACTATCAAAATCTAATCATATATTTTTATTCATTGAATCGTTATATGATAATAATTTGATCAATTATTTTACAAGTGTAGAGAGTCTCACGTATTAAGTGAGTTTATAATTGGGATATCATCTCATCTTACAAATTAGTTTTGTATGGGTTGACTCAAAATCAATCCAAATTTTAAGATTAAGCTTTTACATAACTAAAGAAAATCAACAATTTTTCAACTTGTCAAAATTATTAGATTTTTTTTAACACAAAATTATTAAACCTCTAATGTTTAATTTTTTTCTTGCACCAATTTATATTTCAACAATAAATTGTTAATGGAAAATAAATCATCTCTAATATGGAATAGACCCTACATTCAAGTTTCCTGCATTTCCTTATATTTGTATTACAATCGTTGTGATTTTAGTATTTTCATTTTCTACATCATATTTATCACTCCTCTCTTTTATTTACATTTGAACTGAATGTAGAACCTACGGTTGAAATCAAGGGTAGGGAATCGCAATCCCTCCAATATAACATATGAATGTAGAACCTACGGTTGAAATCAAGGGTAGGGAATCGCAATCCCTCCAATATAACATATGAATGTTAACAAAGTTCTACTAAAAAGTAGACAATTAAAAATAAATAGAAAAGTTGATTTAACTTTTAGTGTTGGATGACTAGTAAAATAAGAGCTAGAAATGTTGATTTGTATTTTGTTCTGATACATATTTTTGTTGTAGACGCATTATGTTCTCCTGCTCTGTGCTTTTAAAGAACAATTACAACAACATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTGGAGCAGTCTCTACAAAGCTTGACCGGTAATTAAGTTTCAACTATCAGTAATGATATCTTTGTTTCAAATTTCCAATCATCCACGTACCATTTGCAAAGATAAAAAGCCATACATGATGCATGCATGAACAGGTGTATCTCCTGGTGAAGGGAGTGGTGCAACAATGTCGGACGATGAAGATGACCAAGCAGAGAGCAATGCAAACTTATATGAAGGAAGCCTTGATGGTGGTGATAGTCTCAGCTTTGGTCCTCTTGTTCCTACTGAAAGTGAAAGATCTTTAATGGAACGTGTGAGGCAGGAGTTGAAGCACGAGCTAAAACAGGTAGCTCATAACTTTCTTATTCTCATATATATGCAATGCAACCATGGTGTATATATTTTATAGGTCAAATGCATCTAAAGGTCCTTTAAGTTTTTCGTTTTTCCCCAAGTGGTCCTTTAAGTTTCAAAAGTCCCAAACAAGTCCTTTAAGTTTCAAAAGTCCCAAACAAGTCATTTAAGTTTTTGAATCGTTTCAAACAAGTCCTTTTAGAGGATGATGATGATGATTGAGATGATAGCAACAAAGAGCATTATCCACCATTTGTCATGCCTAAAAAGATGACTAATTTTAAGTGGGTGTTAGGAGCCAGATTTGGTACCAAAGATGAGTTCAAGGAAGCAATTACCAACTATGCTATCTATAATATGACTTGTTTGAAACGATTCAAAAACTAAAAGGACTTGTTTGGGACTTTTGAAACTTAAAGGACCACTTTGGGAAAAACGAAAAACTTAAAGGGACCTTTAAATGCATTTGACCTATTTTATACTATATATACGTGACATGCATGTGTCTTTGCAAAGATGAAAGAATCAATCACATAAATATTTAAATTGAATTGATTTGCATAGTTAATTAATTTTATGTTTTTTCAATATGCAGGGTTACAAGAGTAAGATTGTGGACATAAGAGAAGAAATTCTACGGAAGAGAAGAGCGGGAAAGCTCCCAGGTGACACAACCTCCCTTTTGAAAGCTTGGTGGCAATCACACTCTAAATGGCCTTATCCTACTGTAAGTTTTAAGATCAATGTCCGTGACAATTGTCATTTCATATATCTATAAAAAAAATTAATAAAAATTGGTTTTTCTCCTATGTCATCTATGGAGTAAATTGAAATTAAATTAGAATTATATGATATTTTTTACTCTTAAGAATAAAACATATACCTTAAAATTAGTATATTTTGAAATTAATATAATATAGTTATTTTAATTAATTATTAATATTATGGATTGCTTTTAAAAAGAGTGAAGTAGTAATATCTTATCCATTATTGATCTATTGATTTAGATTAACATGTTTTTTGCTCTTCATAAATAGTATATCAAATATAGAAAGAAATATAGGAGTATTAATAAACTGGTACAAGATAGATAATATATGTATAAAAATATAAAATCTTCAATAATAATAACAATGTCCCAAAGTTTTAAATAATTCATAAAAAAAACTAATTTTATACTTCCTTCTAACAACAAAAAAGTCTTATTTTGTGATTTCAAATATAAGAAAAAAATCAACTAACCCTATCATATTTAGTGTGATCATTCTTAAATTTAAATTTATTTTTCAATAATACTTTTAATATTAATGGAACAAGTTCCCATGAGGGTATTTTCAAGAAAATTAAATGAAGTGAACTATTTTTCTCAAAGGGTGTGAGGTAGTTTGCTTTTGTTGAATGAAATCCGAGGAAGTATATGTTGAAACTCATTTGAATAATTACTCACCTGTTTTTAATTATACATCATTTTGCCACTTTCATGCGTATCAAAAAATGTAATTGATTTTATATAAAAAAAATTAGAGTAAATTACACTTACCTTCCTTGAAGTTTGTTAAAATGTCACTCACACCCCCTCTATTTTCTAATGGGACACAAACCTTCACTACTTAATTTTCAATGTCATGAAAATAACTTAATCAAGAAAGTGACCTAAAAATTCAAATAAAGGTAAATTATATAATCTCATCCAAGGAGTTTTTGGAAAAAATGCAAAAAGCTAGGGCACAACCATCATAACTTAAGAGGCAAAGTGTACAATTGTGTTTTTCTCACTAACCGTACTTAAACGGTGTTAACTTGAGGGGATGTAAGTGTTTTTTTACCTTAAATATAAGGGAATTTATGTTGTTTAGTTAAACCTCAAAGGAGGTAAGTGTAATTTTACCAAAAAATTATGAGTGATTTTATAAAATTATCCTTTATTAACATTAATAACATGTGAAAAAAAAACATTAATATTTTTTTATAAGCATAAATTTTTAATACTAGCGAAAAGACGGGCACTCCGTGCCCGTCTTTCCGCTCTTTTTATTGCGCTAACGTTTGAAAATTATGAACGGTATTTTTTTTATGAAATTTTGGTTTTGATTAAAAATAAAAATACAAATGTGTGTTGCTTTTTTTAATGACGCAAACAATAATCTTTATTATGGAAAAAATTGTTTAAGAGTATAATTGGAATAATGAAAAAGTAAGTATAAATATAATCATCTAATTTGTTATACTTTTTAAATAATAAAGGAAAAAAAAACAGATAAACATATATTCATATCGTGTTCGTTACATTTGTTTTAATATTTAAATTTATTCTTATCTATTTGTTACATGCGTTACTTGTATTTAAAATTAAGGGTATTTTTGGAAAGAAAATTTCAACCCAAAAATGTGCTGAAAGGGGTAGTTTTCTTTATATATAGTATAGATTTAATTCGTAAAGTGATTTATAAATTGGTAAAAACAAAATTTGTTTTCAAAATACTCCCTCCGGTCCTATTTACAAGAAACAATTTACTATTTAGATACATTAAATAATTTATGTATTTGGTTTAGGTTCTTGACTAGATACATACATTATTCAATGTATCTAAAAAGTCAACTTTTTCTTGTAATTAGGACCGGAGGGAGTATAACTTATGTGGTTTGAAAAGGTTGTACTAATGATGAGTAATTAGAAAAGTCTTGCACCCTCGTAATTCTCTCTCAAATAATATGTGTCTCCCAATGTAAGCATATAGTAGAACTTGATTATTTGTCCGTACTAGTTATGATCAAGGAGACAACCATGACTGGTGAATTAATAACGTATTTAATGTTATGTGCCTAGCTAACTAAAAATTCATCTACGCAACCTTGATGTTGCTGGGCATTATTTGCCTCTTCCATGAATGCTAATCATGTTAAACTCGTGAATGTACTTTTAGGAAGAAGACAAAGCTAGGTTGGTCCAGGAAACAGGACTTCAATTAAAGCAAATAAATAACTGGTTCATTAATCAAAGAAAAAGGAATTGGCATACTAATCCTTCGTCTTCCACTGGCTCCAAAACCAAACGCAAGAGGTGAGTTTTATTTCCCTAATGGACTCTTTTTTCTTGTTTCACAATGTGTTTATTTTAGTTGATGCTTAATCTGATTTTTTATTTTTTTTTACTTTTCAATAGTAGTGGCGCAGGTGAAACAAGTAACCAGAGTTTCATGTGA
Protein sequence

>MS.gene68668.t1

MAFHHDHLSHEINFQPFNEEQQLNQSRDMQRLLPFTGAGAGSAPNWLNNAVNLRQQNFLHLQPDTSQNEDVRGMNMMEKTRDRNRAESNTESSEELSQYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSSLANGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGSGATMSDDEDDQAESNANLYEGSLDGGDSLSFGPLVPTESERSLMERVRQELKHELKQGYKSKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGSKTKRKSSGAGETSNQSFM