AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68780.t1 MTR_3g117380 91.362 301 15 2 1 290 15 315 0.0 516
MS.gene68780.t1 MTR_4g071590 56.711 298 93 7 1 280 1 280 2.29e-99 293
MS.gene68780.t1 MTR_4g471590 56.711 298 93 7 1 280 1 280 2.29e-99 293
MS.gene68780.t1 MTR_8g076340 41.091 275 135 7 21 280 25 287 2.21e-53 176
MS.gene68780.t1 MTR_8g013950 37.778 270 129 7 39 278 33 293 1.57e-45 157
MS.gene68780.t1 MTR_3g109760 40.602 266 127 8 36 280 21 276 2.63e-45 155
MS.gene68780.t1 MTR_5g021340 38.820 322 152 9 1 280 51 369 2.08e-44 155
MS.gene68780.t1 MTR_1g006650 34.667 300 151 8 18 278 8 301 1.66e-42 149
MS.gene68780.t1 MTR_1g046680 61.538 91 35 0 190 280 151 241 1.04e-33 123
MS.gene68780.t1 MTR_1g116010 36.697 218 103 6 93 275 11 228 1.68e-33 123
MS.gene68780.t1 MTR_1g094930 76.923 65 15 0 211 275 147 211 1.75e-33 122
MS.gene68780.t1 MTR_1g094930 76.923 65 15 0 211 275 242 306 8.56e-33 123
MS.gene68780.t1 MTR_7g085410 37.288 236 105 7 80 275 20 252 1.40e-32 121
MS.gene68780.t1 MTR_6g032830 38.158 228 77 10 107 275 34 256 1.94e-32 120
MS.gene68780.t1 MTR_2g094600 68.493 73 23 0 203 275 208 280 3.65e-32 121
MS.gene68780.t1 MTR_4g058910 73.134 67 18 0 211 277 314 380 7.41e-31 119
MS.gene68780.t1 MTR_5g007600 63.291 79 29 0 202 280 250 328 8.91e-30 115
MS.gene68780.t1 MTR_5g007600 57.831 83 35 0 192 274 138 220 4.63e-27 108
MS.gene68780.t1 MTR_7g446110 58.730 63 26 0 210 272 186 248 2.92e-21 90.9
MS.gene68780.t1 MTR_7g445950 55.556 63 28 0 210 272 119 181 8.25e-20 85.1
MS.gene68780.t1 MTR_7g445980 56.923 65 27 1 209 272 31 95 1.48e-19 82.0
MS.gene68780.t1 MTR_7g446070 31.844 179 107 6 100 276 30 195 1.64e-19 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68780.t1 AT4G36240 43.426 251 101 7 40 278 10 231 6.08e-53 173
MS.gene68780.t1 AT5G66320 40.000 315 142 10 8 278 5 316 1.82e-49 167
MS.gene68780.t1 AT5G66320 40.000 315 142 10 8 278 5 316 1.82e-49 167
MS.gene68780.t1 AT4G34680 41.356 295 119 10 6 289 7 258 8.92e-47 158
MS.gene68780.t1 AT4G34680 41.356 295 119 10 6 289 7 258 8.92e-47 158
MS.gene68780.t1 AT4G32890 40.357 280 128 14 21 278 2 264 2.93e-46 158
MS.gene68780.t1 AT3G60530 46.277 188 73 5 94 278 63 225 1.62e-41 144
MS.gene68780.t1 AT5G25830 38.516 283 121 13 40 278 13 286 2.12e-41 146
MS.gene68780.t1 AT2G45050 39.815 216 97 5 87 287 58 255 2.62e-39 139
MS.gene68780.t1 AT3G51080 82.353 68 12 0 211 278 221 288 2.29e-36 132
MS.gene68780.t1 AT3G54810 73.529 68 18 0 211 278 229 296 2.95e-32 121
MS.gene68780.t1 AT3G54810 73.529 68 18 0 211 278 229 296 2.95e-32 121
MS.gene68780.t1 AT3G24050 65.476 84 28 1 194 277 178 260 3.52e-32 120
MS.gene68780.t1 AT1G08010 63.636 77 28 0 201 277 210 286 3.66e-31 118
MS.gene68780.t1 AT1G08010 63.636 77 28 0 201 277 210 286 3.66e-31 118
MS.gene68780.t1 AT1G08010 63.636 77 28 0 201 277 210 286 3.66e-31 118
MS.gene68780.t1 AT1G08000 63.636 77 28 0 201 277 208 284 9.93e-30 114
MS.gene68780.t1 AT1G08000 63.636 77 28 0 201 277 208 284 9.93e-30 114
MS.gene68780.t1 AT3G45170 54.444 90 40 1 196 284 100 189 1.32e-27 106
MS.gene68780.t1 AT2G28340 56.000 75 33 0 213 287 193 267 1.82e-25 102

Find 76 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGTAACTGACCCTCTTCT+TGG 0.222887 3.2:-92700490 None:intergenic
GAGTAATTCGGTTGAGAAAA+TGG 0.282779 3.2:-92700082 None:intergenic
TTCTCATCTCCAACACTTTA+CGG 0.294944 3.2:-92700685 None:intergenic
CAACACTTTACGGTGGCTAT+TGG 0.312622 3.2:-92700675 None:intergenic
GAAAACCCAACCCTCGCGTT+TGG 0.352223 3.2:+92700378 MS.gene68780:CDS
ACCGCCAACACGGTGGTTGC+CGG 0.362678 3.2:+92699898 MS.gene68780:CDS
TTCTTGGGCCTCAAGAGCCT+CGG 0.380431 3.2:-92700474 None:intergenic
GGATGATGACGTGGCAGGTC+TGG 0.383333 3.2:+92700184 MS.gene68780:intron
CTCAGCAAGTGGTAACCATT+CGG 0.399058 3.2:-92700733 None:intergenic
TGAGCCCAAACGCGAGGGTT+GGG 0.405637 3.2:-92700383 None:intergenic
AAAACCCAACCCTCGCGTTT+GGG 0.407277 3.2:+92700379 MS.gene68780:CDS
GTGTTGGTTTGAATTTGAAC+CGG 0.408949 3.2:-92700260 None:intergenic
TGAATTTCACTGCTGAAAGT+TGG 0.418828 3.2:-92700650 None:intergenic
TTGTAACTGACCCTCTTCTT+GGG 0.419497 3.2:-92700489 None:intergenic
GGGTAGAGAAGAGATAGTTC+TGG 0.431245 3.2:-92700239 None:intergenic
GAATTTCACTGCTGAAAGTT+GGG 0.435175 3.2:-92700649 None:intergenic
ACTGCTGAAAGTTGGGCTAC+AGG 0.440191 3.2:-92700642 None:intergenic
TCAGCAAGTGGTAACCATTC+GGG 0.444562 3.2:-92700732 None:intergenic
TGCGGGGTTCGTTATAAATC+AGG 0.450021 3.2:+92700593 MS.gene68780:CDS
ACTCACGGGAACGAGTAATT+CGG 0.455413 3.2:-92700094 None:intergenic
CTGAGCCCAAACGCGAGGGT+TGG 0.457925 3.2:-92700384 None:intergenic
CAGTGGAGAACCGGTCCGTT+GGG 0.465140 3.2:+92700548 MS.gene68780:CDS
AAGACGCCGCAGTGGAGAAC+CGG 0.467079 3.2:+92700539 MS.gene68780:CDS
CTTTGAAACCGAGTTTAAGA+AGG 0.468143 3.2:+92699830 MS.gene68780:CDS
AAACCCTTTGTAACGCGTGC+GGG 0.468327 3.2:+92700576 MS.gene68780:CDS
ACCGGCAACCACCGTGTTGG+CGG 0.469757 3.2:-92699899 None:intergenic
CTTCACGGTTCTGGTCTTCG+TGG 0.473101 3.2:-92700351 None:intergenic
TCTTGGGCCTCAAGAGCCTC+GGG 0.483424 3.2:-92700473 None:intergenic
GGTAGAGAAGAGATAGTTCT+GGG 0.490371 3.2:-92700238 None:intergenic
TTCTTCTGTTTCTTCGCTGG+TGG 0.490862 3.2:-92700446 None:intergenic
ACTGCGGCGTCTTCTGCACC+TGG 0.496651 3.2:-92700529 None:intergenic
GCAGTGGAGAACCGGTCCGT+TGG 0.505231 3.2:+92700547 MS.gene68780:CDS
CTCCTTGACTTCTCTAACGG+CGG 0.512576 3.2:+92699943 MS.gene68780:CDS
ATGACGTGGCAGGTCTGGAA+TGG 0.521490 3.2:+92700189 MS.gene68780:CDS
GAGAAAGAGGAAAGGAATAC+CGG 0.526029 3.2:+92700703 MS.gene68780:CDS
AACCCCGCACGCGTTACAAA+GGG 0.526943 3.2:-92700579 None:intergenic
TGAGAAAATGGAAGAATCAA+AGG 0.527539 3.2:-92700070 None:intergenic
AAGTGTTGGAGATGAGAAAG+AGG 0.539631 3.2:+92700690 MS.gene68780:CDS
ACGACGGTGTAGTCATTGCC+AGG 0.543797 3.2:+92700511 MS.gene68780:CDS
CTGAAAGTTGGGCTACAGGC+CGG 0.545068 3.2:-92700638 None:intergenic
AACCCTTTGTAACGCGTGCG+GGG 0.556096 3.2:+92700577 MS.gene68780:CDS
CAATAGCCACCGTAAAGTGT+TGG 0.557110 3.2:+92700676 MS.gene68780:CDS
ACAAACTCCCTTCTTAAACT+CGG 0.560314 3.2:-92699838 None:intergenic
GAACCCCGCACGCGTTACAA+AGG 0.560484 3.2:-92700580 None:intergenic
TTACAGGATGATGACGTGGC+AGG 0.560919 3.2:+92700179 MS.gene68780:intron
GCTCTTGAGGCCCAAGAAGA+GGG 0.561687 3.2:+92700479 MS.gene68780:CDS
TTGGAGATGAGAAAGAGGAA+AGG 0.563009 3.2:+92700695 MS.gene68780:CDS
GTAACCATTCGGGTCTGAGC+CGG 0.563085 3.2:-92700722 None:intergenic
GGGCGCTGAGCCCAAACGCG+AGG 0.563588 3.2:-92700389 None:intergenic
TTTGAAACCGAGTTTAAGAA+GGG 0.567414 3.2:+92699831 MS.gene68780:CDS
GGCTCTTGAGGCCCAAGAAG+AGG 0.567428 3.2:+92700478 MS.gene68780:CDS
GAAGTCAAGGAGGTCGTCAA+CGG 0.569324 3.2:-92699932 None:intergenic
CACCGCCGTTAGAGAAGTCA+AGG 0.571693 3.2:-92699945 None:intergenic
ATCTTCTGAGAGTGATTGAG+AGG 0.572536 3.2:-92700022 None:intergenic
TGTTGGTTTGAATTTGAACC+GGG 0.578403 3.2:-92700259 None:intergenic
TGACGTGGCAGGTCTGGAAT+GGG 0.589105 3.2:+92700190 MS.gene68780:CDS
TCTCTTCTTCATCTCCGTCG+TGG 0.602523 3.2:-92699978 None:intergenic
AGAATCAAAGGAAGCGTCGG+TGG 0.602647 3.2:-92700058 None:intergenic
GGCGCTGAGCCCAAACGCGA+GGG 0.608307 3.2:-92700388 None:intergenic
GGAAGAATCAAAGGAAGCGT+CGG 0.616525 3.2:-92700061 None:intergenic
TTCACCGGCAACCACCGTGT+TGG 0.618211 3.2:-92699902 None:intergenic
CAATTTACAGGATGATGACG+TGG 0.618285 3.2:+92700175 MS.gene68780:intron
CTAATGAATGACTCAGCAAG+TGG 0.621278 3.2:-92700744 None:intergenic
AGGTGCAGAAGACGCCGCAG+TGG 0.632590 3.2:+92700531 MS.gene68780:CDS
AGAACTATCTCTTCTCTACC+CGG 0.632934 3.2:+92700241 MS.gene68780:CDS
GGGTTCGTTATAAATCAGGT+CGG 0.635663 3.2:+92700597 MS.gene68780:CDS
GTCAACGGAGAAATCTTCAC+CGG 0.637583 3.2:-92699917 None:intergenic
GACCTCCTTGACTTCTCTAA+CGG 0.644071 3.2:+92699940 MS.gene68780:CDS
AAAACCCTTTGTAACGCGTG+CGG 0.650760 3.2:+92700575 MS.gene68780:CDS
TCATCTCCAACACTTTACGG+TGG 0.668782 3.2:-92700682 None:intergenic
AACGGACCGGTTCTCCACTG+CGG 0.699688 3.2:-92700545 None:intergenic
AATACCGGCTCAGACCCGAA+TGG 0.701300 3.2:+92700718 MS.gene68780:CDS
TAGCTTCACCGCCAACACGG+TGG 0.733444 3.2:+92699891 MS.gene68780:CDS
CGCCGTTAGAGAAGTCAAGG+AGG 0.737377 3.2:-92699942 None:intergenic
AAGAGGGTCAGTTACAACGA+CGG 0.739560 3.2:+92700495 MS.gene68780:CDS
GGTGATATTCTTCACCACGA+CGG 0.777931 3.2:+92699964 MS.gene68780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTATTAGTAATTGAAATT+GGG + chr3.2:92700148-92700167 MS.gene68780:intron 15.0%
!! TTTCAATTACTAATACAAAA+CGG - chr3.2:92700146-92700165 None:intergenic 15.0%
!! TTTGTATTAGTAATTGAAAT+TGG + chr3.2:92700147-92700166 MS.gene68780:intron 15.0%
!! TGTATTAGTAATTGAAATTG+GGG + chr3.2:92700149-92700168 MS.gene68780:intron 20.0%
! GTATTAGTAATTGAAATTGG+GGG + chr3.2:92700150-92700169 MS.gene68780:intron 25.0%
TGAGAAAATGGAAGAATCAA+AGG - chr3.2:92700073-92700092 None:intergenic 30.0%
! TTTGAAACCGAGTTTAAGAA+GGG + chr3.2:92699831-92699850 MS.gene68780:CDS 30.0%
!! TTTGTTTTTCAGCAAACTCT+CGG + chr3.2:92699856-92699875 MS.gene68780:CDS 30.0%
AAATTGGGGGTTCAATTTAC+AGG + chr3.2:92700163-92700182 MS.gene68780:intron 35.0%
AACGAAGAGAGAAAAACTCA+CGG - chr3.2:92700112-92700131 None:intergenic 35.0%
ACAAACTCCCTTCTTAAACT+CGG - chr3.2:92699841-92699860 None:intergenic 35.0%
CAAAAACATGAAACTCAGCA+TGG + chr3.2:92700290-92700309 MS.gene68780:CDS 35.0%
GAATTTCACTGCTGAAAGTT+GGG - chr3.2:92700652-92700671 None:intergenic 35.0%
GAGTAATTCGGTTGAGAAAA+TGG - chr3.2:92700085-92700104 None:intergenic 35.0%
TGAATTTCACTGCTGAAAGT+TGG - chr3.2:92700653-92700672 None:intergenic 35.0%
TTCTCATCTCCAACACTTTA+CGG - chr3.2:92700688-92700707 None:intergenic 35.0%
! GTTGGGTTTTCTATTCTTCA+CGG - chr3.2:92700369-92700388 None:intergenic 35.0%
! TTTTCTATTCTTCACGGTTC+TGG - chr3.2:92700363-92700382 None:intergenic 35.0%
!! CTTTGAAACCGAGTTTAAGA+AGG + chr3.2:92699830-92699849 MS.gene68780:CDS 35.0%
!! GTGTTGGTTTGAATTTGAAC+CGG - chr3.2:92700263-92700282 None:intergenic 35.0%
!! TGCTGAGTTTCATGTTTTTG+AGG - chr3.2:92700290-92700309 None:intergenic 35.0%
!! TGTTGGTTTGAATTTGAACC+GGG - chr3.2:92700262-92700281 None:intergenic 35.0%
!! TTTTTCTTCTGTTTCTTCGC+TGG - chr3.2:92700452-92700471 None:intergenic 35.0%
!!! TAAATCAGGTCGGCTTTTTT+CGG + chr3.2:92700607-92700626 MS.gene68780:CDS 35.0%
ACGAAGAGAGAAAAACTCAC+GGG - chr3.2:92700111-92700130 None:intergenic 40.0%
AGAACTATCTCTTCTCTACC+CGG + chr3.2:92700241-92700260 MS.gene68780:CDS 40.0%
GAGAAAGAGGAAAGGAATAC+CGG + chr3.2:92700703-92700722 MS.gene68780:CDS 40.0%
GGGTTCGTTATAAATCAGGT+CGG + chr3.2:92700597-92700616 MS.gene68780:CDS 40.0%
GGTAGAGAAGAGATAGTTCT+GGG - chr3.2:92700241-92700260 None:intergenic 40.0%
TTGGAGATGAGAAAGAGGAA+AGG + chr3.2:92700695-92700714 MS.gene68780:CDS 40.0%
TTGTAACTGACCCTCTTCTT+GGG - chr3.2:92700492-92700511 None:intergenic 40.0%
! ATCTTCTGAGAGTGATTGAG+AGG - chr3.2:92700025-92700044 None:intergenic 40.0%
! CAATTTACAGGATGATGACG+TGG + chr3.2:92700175-92700194 MS.gene68780:intron 40.0%
!! AAGTGTTGGAGATGAGAAAG+AGG + chr3.2:92700690-92700709 MS.gene68780:CDS 40.0%
!! ATGTTTTTGAGGACACGTGT+TGG - chr3.2:92700279-92700298 None:intergenic 40.0%
!!! GCTTTTTTCGGAGTATAGAC+CGG + chr3.2:92700619-92700638 MS.gene68780:CDS 40.0%
AAAACCCTTTGTAACGCGTG+CGG + chr3.2:92700575-92700594 MS.gene68780:CDS 45.0%
AAGAGGGTCAGTTACAACGA+CGG + chr3.2:92700495-92700514 MS.gene68780:CDS 45.0%
ACTCACGGGAACGAGTAATT+CGG - chr3.2:92700097-92700116 None:intergenic 45.0%
CAACACTTTACGGTGGCTAT+TGG - chr3.2:92700678-92700697 None:intergenic 45.0%
CAATAGCCACCGTAAAGTGT+TGG + chr3.2:92700676-92700695 MS.gene68780:CDS 45.0%
CCAAAAACAACAGACGGTGA+CGG - chr3.2:92700422-92700441 None:intergenic 45.0%
GAAACAGAAGAAAAAGCCCG+AGG + chr3.2:92700457-92700476 MS.gene68780:CDS 45.0%
GACCTCCTTGACTTCTCTAA+CGG + chr3.2:92699940-92699959 MS.gene68780:CDS 45.0%
GGGTAGAGAAGAGATAGTTC+TGG - chr3.2:92700242-92700261 None:intergenic 45.0%
GGTGATATTCTTCACCACGA+CGG + chr3.2:92699964-92699983 MS.gene68780:CDS 45.0%
GTCAACGGAGAAATCTTCAC+CGG - chr3.2:92699920-92699939 None:intergenic 45.0%
GTTGTAACTGACCCTCTTCT+TGG - chr3.2:92700493-92700512 None:intergenic 45.0%
TCAGCAAGTGGTAACCATTC+GGG - chr3.2:92700735-92700754 None:intergenic 45.0%
TCATCTCCAACACTTTACGG+TGG - chr3.2:92700685-92700704 None:intergenic 45.0%
TGCGGGGTTCGTTATAAATC+AGG + chr3.2:92700593-92700612 MS.gene68780:CDS 45.0%
! GGAAGAATCAAAGGAAGCGT+CGG - chr3.2:92700064-92700083 None:intergenic 45.0%
! TTCTTCTGTTTCTTCGCTGG+TGG - chr3.2:92700449-92700468 None:intergenic 45.0%
!! ACAGACGGTGACGGAAAAAA+CGG - chr3.2:92700413-92700432 None:intergenic 45.0%
!! CAAAGGGTTTTAGCACCCAA+CGG - chr3.2:92700566-92700585 None:intergenic 45.0%
!!! CGTCACCGTCTGTTGTTTTT+GGG + chr3.2:92700420-92700439 MS.gene68780:CDS 45.0%
!!! GTCACCGTCTGTTGTTTTTG+GGG + chr3.2:92700421-92700440 MS.gene68780:CDS 45.0%
!!! TCACCGTCTGTTGTTTTTGG+GGG + chr3.2:92700422-92700441 MS.gene68780:CDS 45.0%
!!! TTTTAGCTTCACCGCCAACA+CGG + chr3.2:92699888-92699907 MS.gene68780:CDS 45.0%
AAAACCCAACCCTCGCGTTT+GGG + chr3.2:92700379-92700398 MS.gene68780:CDS 50.0%
AAACCCTTTGTAACGCGTGC+GGG + chr3.2:92700576-92700595 MS.gene68780:CDS 50.0%
ACTGCTGAAAGTTGGGCTAC+AGG - chr3.2:92700645-92700664 None:intergenic 50.0%
CTCCTTGACTTCTCTAACGG+CGG + chr3.2:92699943-92699962 MS.gene68780:CDS 50.0%
GAAGTCAAGGAGGTCGTCAA+CGG - chr3.2:92699935-92699954 None:intergenic 50.0%
GGTCCCCCAAAAACAACAGA+CGG - chr3.2:92700428-92700447 None:intergenic 50.0%
TCTCTTCTTCATCTCCGTCG+TGG - chr3.2:92699981-92700000 None:intergenic 50.0%
! TTACAGGATGATGACGTGGC+AGG + chr3.2:92700179-92700198 MS.gene68780:intron 50.0%
! TTTTCAGCAAACTCTCGGCG+AGG + chr3.2:92699861-92699880 MS.gene68780:CDS 50.0%
!! AGAATCAAAGGAAGCGTCGG+TGG - chr3.2:92700061-92700080 None:intergenic 50.0%
!! CAGACGGTGACGGAAAAAAC+GGG - chr3.2:92700412-92700431 None:intergenic 50.0%
!!! CCGTCACCGTCTGTTGTTTT+TGG + chr3.2:92700419-92700438 MS.gene68780:CDS 50.0%
AACCCCGCACGCGTTACAAA+GGG - chr3.2:92700582-92700601 None:intergenic 55.0%
AACCCTTTGTAACGCGTGCG+GGG + chr3.2:92700577-92700596 MS.gene68780:CDS 55.0%
ACGACGGTGTAGTCATTGCC+AGG + chr3.2:92700511-92700530 MS.gene68780:CDS 55.0%
ATGACGTGGCAGGTCTGGAA+TGG + chr3.2:92700189-92700208 MS.gene68780:CDS 55.0%
CACCGCCGTTAGAGAAGTCA+AGG - chr3.2:92699948-92699967 None:intergenic 55.0%
CGCCGTTAGAGAAGTCAAGG+AGG - chr3.2:92699945-92699964 None:intergenic 55.0%
CTGAAAGTTGGGCTACAGGC+CGG - chr3.2:92700641-92700660 None:intergenic 55.0%
GAAAAAGCCCGAGGCTCTTG+AGG + chr3.2:92700466-92700485 MS.gene68780:CDS 55.0%
GAAAACCCAACCCTCGCGTT+TGG + chr3.2:92700378-92700397 MS.gene68780:CDS 55.0%
GCTCTTGAGGCCCAAGAAGA+GGG + chr3.2:92700479-92700498 MS.gene68780:CDS 55.0%
GTAACCATTCGGGTCTGAGC+CGG - chr3.2:92700725-92700744 None:intergenic 55.0%
TTCTTGGGCCTCAAGAGCCT+CGG - chr3.2:92700477-92700496 None:intergenic 55.0%
! CTTCACGGTTCTGGTCTTCG+TGG - chr3.2:92700354-92700373 None:intergenic 55.0%
! TGACGTGGCAGGTCTGGAAT+GGG + chr3.2:92700190-92700209 MS.gene68780:CDS 55.0%
!! AATACCGGCTCAGACCCGAA+TGG + chr3.2:92700718-92700737 MS.gene68780:CDS 55.0%
!! GGTTTTAGCACCCAACGGAC+CGG - chr3.2:92700561-92700580 None:intergenic 55.0%
AAGACGCCGCAGTGGAGAAC+CGG + chr3.2:92700539-92700558 MS.gene68780:CDS 60.0%
CAGTGGAGAACCGGTCCGTT+GGG + chr3.2:92700548-92700567 MS.gene68780:CDS 60.0%
GAACCCCGCACGCGTTACAA+AGG - chr3.2:92700583-92700602 None:intergenic 60.0%
GGCTCTTGAGGCCCAAGAAG+AGG + chr3.2:92700478-92700497 MS.gene68780:CDS 60.0%
TAGCTTCACCGCCAACACGG+TGG + chr3.2:92699891-92699910 MS.gene68780:CDS 60.0%
TCTTGGGCCTCAAGAGCCTC+GGG - chr3.2:92700476-92700495 None:intergenic 60.0%
TGAGCCCAAACGCGAGGGTT+GGG - chr3.2:92700386-92700405 None:intergenic 60.0%
TTCACCGGCAACCACCGTGT+TGG - chr3.2:92699905-92699924 None:intergenic 60.0%
! AACGGACCGGTTCTCCACTG+CGG - chr3.2:92700548-92700567 None:intergenic 60.0%
! GGATGATGACGTGGCAGGTC+TGG + chr3.2:92700184-92700203 MS.gene68780:intron 60.0%
ACCGCCAACACGGTGGTTGC+CGG + chr3.2:92699898-92699917 MS.gene68780:CDS 65.0%
ACCGGCAACCACCGTGTTGG+CGG - chr3.2:92699902-92699921 None:intergenic 65.0%
ACTGCGGCGTCTTCTGCACC+TGG - chr3.2:92700532-92700551 None:intergenic 65.0%
AGGTGCAGAAGACGCCGCAG+TGG + chr3.2:92700531-92700550 MS.gene68780:CDS 65.0%
CTGAGCCCAAACGCGAGGGT+TGG - chr3.2:92700387-92700406 None:intergenic 65.0%
GCAGTGGAGAACCGGTCCGT+TGG + chr3.2:92700547-92700566 MS.gene68780:CDS 65.0%
! GGCGCTGAGCCCAAACGCGA+GGG - chr3.2:92700391-92700410 None:intergenic 70.0%
!! GGGCGCTGAGCCCAAACGCG+AGG - chr3.2:92700392-92700411 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 92699808 92700754 92699808 ID=MS.gene68780
chr3.2 mRNA 92699808 92700754 92699808 ID=MS.gene68780.t1;Parent=MS.gene68780
chr3.2 exon 92699808 92700110 92699808 ID=MS.gene68780.t1.exon1;Parent=MS.gene68780.t1
chr3.2 CDS 92699808 92700110 92699808 ID=cds.MS.gene68780.t1;Parent=MS.gene68780.t1
chr3.2 exon 92700185 92700754 92700185 ID=MS.gene68780.t1.exon2;Parent=MS.gene68780.t1
chr3.2 CDS 92700185 92700754 92700185 ID=cds.MS.gene68780.t1;Parent=MS.gene68780.t1
Gene Sequence

>MS.gene68780

ATGGAGTTTGCAGTAGCAAAAGCTTTGAAACCGAGTTTAAGAAGGGAGTTTGTTTTTCAGCAAACTCTCGGCGAGGAACTTTTTAGCTTCACCGCCAACACGGTGGTTGCCGGTGAAGATTTCTCCGTTGACGACCTCCTTGACTTCTCTAACGGCGGTGATATTCTTCACCACGACGGAGATGAAGAAGAGAAAGATAGCAGTTTATCTCTTTCCTCTCAATCACTCTCAGAAGATAACAACTCAAATTCCACCGACGCTTCCTTTGATTCTTCCATTTTCTCAACCGAATTACTCGTTCCCGTGAGTTTTTCTCTCTTCGTTTCTTTTTCTTTCCGTTTTGTATTAGTAATTGAAATTGGGGGTTCAATTTACAGGATGATGACGTGGCAGGTCTGGAATGGGTTTCACACTTTGTAGATGATTCTCTCCCAGAACTATCTCTTCTCTACCCGGTTCAAATTCAAACCAACACGTGTCCTCAAAAACATGAAACTCAGCATGGAAAAACTTTACGTTTTTCAACTGAAAAAATGAAAATTACCACGAAGACCAGAACCGTGAAGAATAGAAAACCCAACCCTCGCGTTTGGGCTCAGCGCCCGTTTTTTCCGTCACCGTCTGTTGTTTTTGGGGGACCACCAGCGAAGAAACAGAAGAAAAAGCCCGAGGCTCTTGAGGCCCAAGAAGAGGGTCAGTTACAACGACGGTGTAGTCATTGCCAGGTGCAGAAGACGCCGCAGTGGAGAACCGGTCCGTTGGGTGCTAAAACCCTTTGTAACGCGTGCGGGGTTCGTTATAAATCAGGTCGGCTTTTTTCGGAGTATAGACCGGCCTGTAGCCCAACTTTCAGCAGTGAAATTCATTCCAATAGCCACCGTAAAGTGTTGGAGATGAGAAAGAGGAAAGGAATACCGGCTCAGACCCGAATGGTTACCACTTGCTGA
Protein sequence

>MS.gene68780.t1

MEFAVAKALKPSLRREFVFQQTLGEELFSFTANTVVAGEDFSVDDLLDFSNGGDILHHDGDEEEKDSSLSLSSQSLSEDNNSNSTDASFDSSIFSTELLVPDDDVAGLEWVSHFVDDSLPELSLLYPVQIQTNTCPQKHETQHGKTLRFSTEKMKITTKTRTVKNRKPNPRVWAQRPFFPSPSVVFGGPPAKKQKKKPEALEAQEEGQLQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFSSEIHSNSHRKVLEMRKRKGIPAQTRMVTTC