Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68786.t1 | AES74237.1 | 91.2 | 182 | 16 | 0 | 1 | 182 | 15 | 196 | 6.50E-95 | 356.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68786.t1 | Q9FEN9 | 59.6 | 183 | 69 | 2 | 1 | 179 | 31 | 212 | 1.1e-61 | 237.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68786.t1 | G7J7R1 | 91.2 | 182 | 16 | 0 | 1 | 182 | 15 | 196 | 4.7e-95 | 356.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene68786.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68786.t1 | MTR_3g117280 | 91.209 | 182 | 16 | 0 | 1 | 182 | 15 | 196 | 3.74e-126 | 353 |
| MS.gene68786.t1 | MTR_3g117270 | 71.505 | 186 | 49 | 1 | 1 | 182 | 33 | 218 | 1.43e-99 | 286 |
| MS.gene68786.t1 | MTR_3g117270 | 70.391 | 179 | 49 | 1 | 1 | 175 | 33 | 211 | 2.52e-94 | 273 |
| MS.gene68786.t1 | MTR_2g078310 | 54.839 | 186 | 80 | 2 | 1 | 182 | 31 | 216 | 1.41e-72 | 218 |
| MS.gene68786.t1 | MTR_3g117270 | 68.421 | 133 | 38 | 1 | 1 | 129 | 33 | 165 | 7.85e-66 | 199 |
| MS.gene68786.t1 | MTR_3g117270 | 68.182 | 132 | 38 | 1 | 1 | 128 | 33 | 164 | 1.14e-64 | 196 |
| MS.gene68786.t1 | MTR_2g090365 | 51.923 | 156 | 70 | 2 | 8 | 158 | 297 | 452 | 1.25e-52 | 174 |
| MS.gene68786.t1 | MTR_5g097190 | 43.750 | 128 | 63 | 3 | 34 | 152 | 11 | 138 | 7.91e-27 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68786.t1 | AT4G39100 | 59.563 | 183 | 69 | 2 | 1 | 179 | 31 | 212 | 1.03e-81 | 242 |
| MS.gene68786.t1 | AT4G22140 | 55.914 | 186 | 78 | 2 | 1 | 182 | 39 | 224 | 5.25e-78 | 232 |
| MS.gene68786.t1 | AT4G22140 | 55.307 | 179 | 76 | 2 | 1 | 175 | 39 | 217 | 1.38e-73 | 221 |
| MS.gene68786.t1 | AT4G22140 | 55.307 | 179 | 76 | 2 | 1 | 175 | 39 | 217 | 1.38e-73 | 221 |
| MS.gene68786.t1 | AT4G39100 | 63.910 | 133 | 44 | 1 | 1 | 129 | 31 | 163 | 1.59e-63 | 193 |
| MS.gene68786.t1 | AT4G04260 | 48.045 | 179 | 87 | 3 | 1 | 174 | 1 | 178 | 1.93e-56 | 176 |
| MS.gene68786.t1 | AT4G04260 | 48.045 | 179 | 87 | 3 | 1 | 174 | 14 | 191 | 3.36e-56 | 176 |
| MS.gene68786.t1 | AT4G04260 | 55.046 | 109 | 46 | 1 | 1 | 106 | 32 | 140 | 6.35e-38 | 127 |
Find 36 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAGGAATACCTTTGTATT+TGG | 0.149988 | 3.2:-92602281 | None:intergenic |
| TTCGTGTCCGTTGGTATTAC+TGG | 0.213529 | 3.2:+92600439 | MS.gene68786:CDS |
| AATGAAGTTGTCAATTCTTT+CGG | 0.316759 | 3.2:-92602195 | None:intergenic |
| TTAGGAATACCTTTGTATTT+GGG | 0.355673 | 3.2:-92602280 | None:intergenic |
| ACCATCACTTTCATCTTTGA+CGG | 0.371838 | 3.2:-92603128 | None:intergenic |
| AAAATGCACTGTTCACAGTT+TGG | 0.374580 | 3.2:+92600560 | MS.gene68786:CDS |
| CACTGGATCATAACTTCATC+AGG | 0.392678 | 3.2:-92600870 | None:intergenic |
| CATAACTTCATCAGGGTTGT+AGG | 0.393557 | 3.2:-92600862 | None:intergenic |
| ACTCACACTTGAACTATATC+AGG | 0.399463 | 3.2:-92600666 | None:intergenic |
| TGTTGGTATCCACGGTTTAG+AGG | 0.405406 | 3.2:-92600373 | None:intergenic |
| TTGAACTACAATTCCGCTAC+TGG | 0.456893 | 3.2:+92600633 | MS.gene68786:CDS |
| CAAGAGACGTTCGTGTCCGT+TGG | 0.506195 | 3.2:+92600430 | MS.gene68786:CDS |
| CGACCCTTCTTTGTCTCCTC+CGG | 0.527955 | 3.2:-92600462 | None:intergenic |
| TACATGAAGCTTGATGTTGT+TGG | 0.528797 | 3.2:+92600588 | MS.gene68786:CDS |
| AGTGTGATCGCTGCACTGAT+TGG | 0.536011 | 3.2:+92600889 | MS.gene68786:CDS |
| GCCACATATGTTGGTATCCA+CGG | 0.537762 | 3.2:-92600381 | None:intergenic |
| TGTCCGTTGGTATTACTGGC+CGG | 0.541918 | 3.2:+92600443 | MS.gene68786:CDS |
| ATAACTTCATCAGGGTTGTA+GGG | 0.552648 | 3.2:-92600861 | None:intergenic |
| ACCGTCATGTCTATACAAGC+AGG | 0.569799 | 3.2:-92602164 | None:intergenic |
| AAGGGTCGGCGTCATTTCCA+TGG | 0.570085 | 3.2:+92600477 | MS.gene68786:CDS |
| CTGGCCGGAGGAGACAAAGA+AGG | 0.573866 | 3.2:+92600458 | MS.gene68786:CDS |
| ACCGTGGATACCAACATATG+TGG | 0.579459 | 3.2:+92600380 | MS.gene68786:CDS |
| TCGATCATAGCCACATATGT+TGG | 0.588140 | 3.2:-92600390 | None:intergenic |
| GCGTCATTTCCATGGCTCAA+AGG | 0.593809 | 3.2:+92600485 | MS.gene68786:CDS |
| CGGAGGAGACAAAGAAGGGT+CGG | 0.615656 | 3.2:+92600463 | MS.gene68786:CDS |
| TCCTGCTTGTATAGACATGA+CGG | 0.620123 | 3.2:+92602163 | MS.gene68786:CDS |
| AATCAGTGCAGCGATCACAC+TGG | 0.630754 | 3.2:-92600887 | None:intergenic |
| CAGAGTGTTGATACAATCGA+AGG | 0.642499 | 3.2:+92600537 | MS.gene68786:CDS |
| AGGAGTGAGAGCACCAGTAG+CGG | 0.642633 | 3.2:-92600646 | None:intergenic |
| TGGCCGGAGGAGACAAAGAA+GGG | 0.643737 | 3.2:+92600459 | MS.gene68786:CDS |
| TGCAAGACTCCCAAATACAA+AGG | 0.662219 | 3.2:+92602271 | MS.gene68786:CDS |
| ACTGGATCATAACTTCATCA+GGG | 0.673831 | 3.2:-92600869 | None:intergenic |
| CCTCCGGCCAGTAATACCAA+CGG | 0.685583 | 3.2:-92600446 | None:intergenic |
| CCGTTGGTATTACTGGCCGG+AGG | 0.685949 | 3.2:+92600446 | MS.gene68786:CDS |
| GCATGCGTTCCTCTAAACCG+TGG | 0.713047 | 3.2:+92600364 | None:intergenic |
| TGCTTGTATAGACATGACGG+TGG | 0.750089 | 3.2:+92602166 | MS.gene68786:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAATATAAAAAAAACTTAT+TGG | + | chr3.2:92601630-92601649 | MS.gene68786:intron | 10.0% |
| !! | TATGGTTATTATTTAATTAA+GGG | - | chr3.2:92601773-92601792 | None:intergenic | 10.0% |
| !!! | AAATTTTTCTTCTAAATAAA+AGG | + | chr3.2:92603048-92603067 | MS.gene68786:intron | 10.0% |
| !! | AATAATAGGAAAATATGTAA+AGG | - | chr3.2:92600700-92600719 | None:intergenic | 15.0% |
| !! | ATAATTGAAATTCATTTGAA+CGG | + | chr3.2:92601425-92601444 | MS.gene68786:intron | 15.0% |
| !! | ATTGTAAAAAATAAAAGGAA+AGG | + | chr3.2:92601234-92601253 | MS.gene68786:intron | 15.0% |
| !! | CTATGGTTATTATTTAATTA+AGG | - | chr3.2:92601774-92601793 | None:intergenic | 15.0% |
| !! | TATTCTTATTCAAAATACAA+AGG | - | chr3.2:92602877-92602896 | None:intergenic | 15.0% |
| !! | TATTTAGAAGAAAAATTTAC+AGG | - | chr3.2:92603046-92603065 | None:intergenic | 15.0% |
| !!! | ATTGATGTTTATATTTTGTT+TGG | + | chr3.2:92603083-92603102 | MS.gene68786:intron | 15.0% |
| !!! | ATTTTTTTTGACAAAATACA+CGG | + | chr3.2:92601555-92601574 | MS.gene68786:intron | 15.0% |
| !!! | GCAAATAAACTAATTTTTTA+TGG | - | chr3.2:92602013-92602032 | None:intergenic | 15.0% |
| !! | AGATTACATTCACATTATAA+AGG | - | chr3.2:92602114-92602133 | None:intergenic | 20.0% |
| !! | ATTAACTCAATCATACAAAA+CGG | - | chr3.2:92602851-92602870 | None:intergenic | 20.0% |
| !! | TAATTGAAATTCATTTGAAC+GGG | + | chr3.2:92601426-92601445 | MS.gene68786:intron | 20.0% |
| !!! | AAAATACACGGATTAATTAA+AGG | + | chr3.2:92601567-92601586 | MS.gene68786:intron | 20.0% |
| !!! | AAATACACGGATTAATTAAA+GGG | + | chr3.2:92601568-92601587 | MS.gene68786:intron | 20.0% |
| !!! | CATTTCAATGATGTTTTATT+TGG | + | chr3.2:92601287-92601306 | MS.gene68786:intron | 20.0% |
| !!! | TATATTTTGTTTGGTATTGT+AGG | + | chr3.2:92603092-92603111 | MS.gene68786:intron | 20.0% |
| !!! | TTCATTGCTCTAAAATTTAA+TGG | + | chr3.2:92600816-92600835 | MS.gene68786:intron | 20.0% |
| ! | AATGAAGTTGTCAATTCTTT+CGG | - | chr3.2:92602198-92602217 | None:intergenic | 25.0% |
| ! | CTGATACCATCTTAAAATTT+GGG | - | chr3.2:92602648-92602667 | None:intergenic | 25.0% |
| ! | TCTATTTCACATAAGTCATT+AGG | - | chr3.2:92603013-92603032 | None:intergenic | 25.0% |
| ! | TCTGATACCATCTTAAAATT+TGG | - | chr3.2:92602649-92602668 | None:intergenic | 25.0% |
| ! | TTAACTCAATCATACAAAAC+GGG | - | chr3.2:92602850-92602869 | None:intergenic | 25.0% |
| ! | TTAGGAATACCTTTGTATTT+GGG | - | chr3.2:92602283-92602302 | None:intergenic | 25.0% |
| ! | TTTCTGTGTAATTATTTCAG+TGG | + | chr3.2:92601496-92601515 | MS.gene68786:intron | 25.0% |
| !! | AACTTAGAGAGTGTAATAAT+AGG | - | chr3.2:92600714-92600733 | None:intergenic | 25.0% |
| !! | TAGAGAATCTTTCTTCTTTT+AGG | + | chr3.2:92601709-92601728 | MS.gene68786:intron | 25.0% |
| !! | TATGTAAATCCTTTTCAAAC+AGG | - | chr3.2:92602074-92602093 | None:intergenic | 25.0% |
| !! | TTAGTTTATTTGCTAAACCA+TGG | + | chr3.2:92602020-92602039 | MS.gene68786:intron | 25.0% |
| !!! | ATTTTTTATGGTTTGTGAAG+AGG | - | chr3.2:92602001-92602020 | None:intergenic | 25.0% |
| !!! | CTTTTTTGTTACAATGAAGA+AGG | + | chr3.2:92600757-92600776 | MS.gene68786:intron | 25.0% |
| !!! | TTGCAACTTTTTTTGAACTT+CGG | - | chr3.2:92602237-92602256 | None:intergenic | 25.0% |
| AAACAGAATTTCCAACACAT+TGG | - | chr3.2:92602432-92602451 | None:intergenic | 30.0% | |
| AATTTCCAACACATTGGAAT+AGG | - | chr3.2:92602426-92602445 | None:intergenic | 30.0% | |
| ACCATTTGAATTTACTTACC+TGG | + | chr3.2:92602351-92602370 | MS.gene68786:intron | 30.0% | |
| ATATATCCATATTTCTCAGC+TGG | - | chr3.2:92602915-92602934 | None:intergenic | 30.0% | |
| CAAATATTTCCCATTTACCA+TGG | - | chr3.2:92602040-92602059 | None:intergenic | 30.0% | |
| CAGCATAATATTTGTGATTC+AGG | + | chr3.2:92602135-92602154 | MS.gene68786:intron | 30.0% | |
| CTAAAACTGTCAAACAATAG+TGG | - | chr3.2:92602306-92602325 | None:intergenic | 30.0% | |
| GATGAAGATATCAAAGATCT+CGG | - | chr3.2:92602380-92602399 | None:intergenic | 30.0% | |
| GCTGAGAAATATGGATATAT+CGG | + | chr3.2:92602915-92602934 | MS.gene68786:intron | 30.0% | |
| GTTAGGAATACCTTTGTATT+TGG | - | chr3.2:92602284-92602303 | None:intergenic | 30.0% | |
| TAATTCCTATTCCAATGTGT+TGG | + | chr3.2:92602418-92602437 | MS.gene68786:intron | 30.0% | |
| TACCATCTTAAAATTTGGGT+TGG | - | chr3.2:92602644-92602663 | None:intergenic | 30.0% | |
| TATAAGATTGTGTCTTTCCA+TGG | - | chr3.2:92602962-92602981 | None:intergenic | 30.0% | |
| TGGTAAATGGGAAATATTTG+AGG | + | chr3.2:92602040-92602059 | MS.gene68786:intron | 30.0% | |
| TTGTTCATGACATGTGATAT+AGG | + | chr3.2:92601039-92601058 | MS.gene68786:intron | 30.0% | |
| TTGTTTGAATTTCAGACTTC+TGG | + | chr3.2:92600972-92600991 | MS.gene68786:intron | 30.0% | |
| TTTGCTAAACCATGGTAAAT+GGG | + | chr3.2:92602028-92602047 | MS.gene68786:intron | 30.0% | |
| ! | ACCATCTTAAAATTTGGGTT+GGG | - | chr3.2:92602643-92602662 | None:intergenic | 30.0% |
| ! | AGACAACAATACTTCTAGTT+AGG | + | chr3.2:92601070-92601089 | MS.gene68786:intron | 30.0% |
| ! | ATTTGCTAAACCATGGTAAA+TGG | + | chr3.2:92602027-92602046 | MS.gene68786:intron | 30.0% |
| ! | CATAACACTTCAGGTTTATT+GGG | - | chr3.2:92602740-92602759 | None:intergenic | 30.0% |
| !! | ATTTTGTTTGGTATTGTAGG+TGG | + | chr3.2:92603095-92603114 | MS.gene68786:intron | 30.0% |
| !! | GGTATTAAGTGTTGAAAACA+AGG | - | chr3.2:92602334-92602353 | None:intergenic | 30.0% |
| !! | GTTTTAGTACCTGTTTGAAA+AGG | + | chr3.2:92602062-92602081 | MS.gene68786:intron | 30.0% |
| !!! | TGAGGGGTGTTTTTTTTTTT+GGG | - | chr3.2:92601898-92601917 | None:intergenic | 30.0% |
| !!! | TTGAGGGGTGTTTTTTTTTT+TGG | - | chr3.2:92601899-92601918 | None:intergenic | 30.0% |
| AAAATGCACTGTTCACAGTT+TGG | + | chr3.2:92600560-92600579 | MS.gene68786:CDS | 35.0% | |
| ACTCACACTTGAACTATATC+AGG | - | chr3.2:92600669-92600688 | None:intergenic | 35.0% | |
| ACTGGATCATAACTTCATCA+GGG | - | chr3.2:92600872-92600891 | None:intergenic | 35.0% | |
| ACTGTCAAACAATAGTGGTT+AGG | - | chr3.2:92602301-92602320 | None:intergenic | 35.0% | |
| AGAACTGTATAAGCAGAACA+AGG | - | chr3.2:92600928-92600947 | None:intergenic | 35.0% | |
| AGCCACAACAGATATAAGAT+AGG | - | chr3.2:92602673-92602692 | None:intergenic | 35.0% | |
| AGCCTATCTTATATCTGTTG+TGG | + | chr3.2:92602668-92602687 | MS.gene68786:intron | 35.0% | |
| AGGTTTATTGGGATAACACT+CGG | - | chr3.2:92602729-92602748 | None:intergenic | 35.0% | |
| ATAACTTCATCAGGGTTGTA+GGG | - | chr3.2:92600864-92600883 | None:intergenic | 35.0% | |
| ATATGTCGTGCTAAAGTTCA+TGG | + | chr3.2:92601114-92601133 | MS.gene68786:intron | 35.0% | |
| ATGCAGTGTTTATAAGGCTT+GGG | + | chr3.2:92602579-92602598 | MS.gene68786:intron | 35.0% | |
| CTTAGAGCTAAGGAAGAAAT+TGG | - | chr3.2:92601461-92601480 | None:intergenic | 35.0% | |
| GAACTGTATAAGCAGAACAA+GGG | - | chr3.2:92600927-92600946 | None:intergenic | 35.0% | |
| GAATCAGCAGATTGTACAAT+TGG | + | chr3.2:92601149-92601168 | MS.gene68786:intron | 35.0% | |
| GCAACACAAATGCCTTAATT+AGG | - | chr3.2:92602800-92602819 | None:intergenic | 35.0% | |
| GCCAGGTAAGTAAATTCAAA+TGG | - | chr3.2:92602355-92602374 | None:intergenic | 35.0% | |
| TACATGAAGCTTGATGTTGT+TGG | + | chr3.2:92600588-92600607 | MS.gene68786:CDS | 35.0% | |
| TATGCAGTGTTTATAAGGCT+TGG | + | chr3.2:92602578-92602597 | MS.gene68786:intron | 35.0% | |
| TCAACCTAACAAAACCAGTA+AGG | - | chr3.2:92602614-92602633 | None:intergenic | 35.0% | |
| TGGCATATGCAGTGTTTATA+AGG | + | chr3.2:92602573-92602592 | MS.gene68786:intron | 35.0% | |
| TTGTTACAATGAAGAAGGTG+TGG | + | chr3.2:92600762-92600781 | MS.gene68786:intron | 35.0% | |
| ! | ATAAACCTGAAGTGTTATGG+TGG | + | chr3.2:92602741-92602760 | MS.gene68786:intron | 35.0% |
| ! | CAACAATACTTCTAGTTAGG+TGG | + | chr3.2:92601073-92601092 | MS.gene68786:intron | 35.0% |
| ! | CCAATAAACCTGAAGTGTTA+TGG | + | chr3.2:92602738-92602757 | MS.gene68786:intron | 35.0% |
| ! | CCATAACACTTCAGGTTTAT+TGG | - | chr3.2:92602741-92602760 | None:intergenic | 35.0% |
| ! | TGTTACAATGAAGAAGGTGT+GGG | + | chr3.2:92600763-92600782 | MS.gene68786:intron | 35.0% |
| !! | AACAATGCTTGCTTTTGTGA+AGG | - | chr3.2:92601838-92601857 | None:intergenic | 35.0% |
| !! | ACAATGCTTGCTTTTGTGAA+GGG | - | chr3.2:92601837-92601856 | None:intergenic | 35.0% |
| !! | AGTGTTAACTTGTGTCCTTA+GGG | - | chr3.2:92601749-92601768 | None:intergenic | 35.0% |
| !! | CAATTTCTTCCTTAGCTCTA+AGG | + | chr3.2:92601459-92601478 | MS.gene68786:intron | 35.0% |
| !! | TAGTGTTAACTTGTGTCCTT+AGG | - | chr3.2:92601750-92601769 | None:intergenic | 35.0% |
| !! | TTTGGTGGGTTATCTATCTA+TGG | - | chr3.2:92601791-92601810 | None:intergenic | 35.0% |
| !! | TTTTTAGGGGTGATGAGTTT+TGG | - | chr3.2:92601809-92601828 | None:intergenic | 35.0% |
| !!! | GAGGGGTGTTTTTTTTTTTG+GGG | - | chr3.2:92601897-92601916 | None:intergenic | 35.0% |
| !!! | GTTACCTTACTGGTTTTGTT+AGG | + | chr3.2:92602607-92602626 | MS.gene68786:intron | 35.0% |
| AATCATTAACCTGTGCCTTG+AGG | - | chr3.2:92601610-92601629 | None:intergenic | 40.0% | |
| AATGCCTTAATTAGGCAGCT+AGG | - | chr3.2:92602792-92602811 | None:intergenic | 40.0% | |
| ACCCCTCAAAATAAAACACC+CGG | + | chr3.2:92601910-92601929 | MS.gene68786:intron | 40.0% | |
| ACTTTCCACCATAACACTTC+AGG | - | chr3.2:92602749-92602768 | None:intergenic | 40.0% | |
| AGAAGTAATGAGACACCAGA+CGG | - | chr3.2:92601361-92601380 | None:intergenic | 40.0% | |
| ATATCGGCATGCTTCTCTAT+AGG | + | chr3.2:92602931-92602950 | MS.gene68786:intron | 40.0% | |
| ATCATTAACCTGTGCCTTGA+GGG | - | chr3.2:92601609-92601628 | None:intergenic | 40.0% | |
| ATGCCTTAATTAGGCAGCTA+GGG | - | chr3.2:92602791-92602810 | None:intergenic | 40.0% | |
| CACTGGATCATAACTTCATC+AGG | - | chr3.2:92600873-92600892 | None:intergenic | 40.0% | |
| CATAACTTCATCAGGGTTGT+AGG | - | chr3.2:92600865-92600884 | None:intergenic | 40.0% | |
| CTCAAGTAGTAGCACATACA+CGG | + | chr3.2:92601522-92601541 | MS.gene68786:intron | 40.0% | |
| GAAGATATCAAAGATCTCGG+AGG | - | chr3.2:92602377-92602396 | None:intergenic | 40.0% | |
| GTCTACACTTCAGGCTTATT+GGG | + | chr3.2:92602702-92602721 | MS.gene68786:intron | 40.0% | |
| GTTTCTTAACATGTGCCCTA+AGG | + | chr3.2:92601731-92601750 | MS.gene68786:intron | 40.0% | |
| GTTTGACCAGCTGAGAAATA+TGG | + | chr3.2:92602906-92602925 | MS.gene68786:intron | 40.0% | |
| TCCTGCTTGTATAGACATGA+CGG | + | chr3.2:92602163-92602182 | MS.gene68786:CDS | 40.0% | |
| TCCTTAGGATAAGTGCTCTT+CGG | - | chr3.2:92601961-92601980 | None:intergenic | 40.0% | |
| TCGATCATAGCCACATATGT+TGG | - | chr3.2:92600393-92600412 | None:intergenic | 40.0% | |
| TGCAAGACTCCCAAATACAA+AGG | + | chr3.2:92602271-92602290 | MS.gene68786:CDS | 40.0% | |
| TTGAACTACAATTCCGCTAC+TGG | + | chr3.2:92600633-92600652 | MS.gene68786:CDS | 40.0% | |
| ! | AATCATACAAAACGGGCTTG+AGG | - | chr3.2:92602843-92602862 | None:intergenic | 40.0% |
| ! | ATCATACAAAACGGGCTTGA+GGG | - | chr3.2:92602842-92602861 | None:intergenic | 40.0% |
| ! | TATGGTTTGTGAAGAGGTGT+GGG | - | chr3.2:92601995-92602014 | None:intergenic | 40.0% |
| ! | TTATGGTTTGTGAAGAGGTG+TGG | - | chr3.2:92601996-92602015 | None:intergenic | 40.0% |
| !! | AATGTTAACTTGTGCCCTCA+AGG | + | chr3.2:92601592-92601611 | MS.gene68786:intron | 40.0% |
| !! | CAATGCTTGCTTTTGTGAAG+GGG | - | chr3.2:92601836-92601855 | None:intergenic | 40.0% |
| !! | CAGAGTGTTGATACAATCGA+AGG | + | chr3.2:92600537-92600556 | MS.gene68786:CDS | 40.0% |
| !! | GCCCAACCCAAATTTTAAGA+TGG | + | chr3.2:92602639-92602658 | MS.gene68786:intron | 40.0% |
| !! | TTGTGAAGGGGTCTGTTTTT+AGG | - | chr3.2:92601824-92601843 | None:intergenic | 40.0% |
| !!! | ACCGGGTGTTTTATTTTGAG+GGG | - | chr3.2:92601914-92601933 | None:intergenic | 40.0% |
| !!! | GACCGGGTGTTTTATTTTGA+GGG | - | chr3.2:92601915-92601934 | None:intergenic | 40.0% |
| !!! | TGTGAAGGGGTCTGTTTTTA+GGG | - | chr3.2:92601823-92601842 | None:intergenic | 40.0% |
| ACCGTCATGTCTATACAAGC+AGG | - | chr3.2:92602167-92602186 | None:intergenic | 45.0% | |
| ACCGTGGATACCAACATATG+TGG | + | chr3.2:92600380-92600399 | MS.gene68786:CDS | 45.0% | |
| ACTGCATATGCCATATGTCC+AGG | - | chr3.2:92602566-92602585 | None:intergenic | 45.0% | |
| AGGATGCAATGAAGACAACC+CGG | - | chr3.2:92602492-92602511 | None:intergenic | 45.0% | |
| CGTCTACACTTCAGGCTTAT+TGG | + | chr3.2:92602701-92602720 | MS.gene68786:intron | 45.0% | |
| CTTCTCTATAGGCATAGCCA+TGG | + | chr3.2:92602942-92602961 | MS.gene68786:intron | 45.0% | |
| GAAAAAGCTCCTTTGAGCCA+TGG | - | chr3.2:92600497-92600516 | None:intergenic | 45.0% | |
| GAAGTAATGAGACACCAGAC+GGG | - | chr3.2:92601360-92601379 | None:intergenic | 45.0% | |
| GCCACATATGTTGGTATCCA+CGG | - | chr3.2:92600384-92600403 | None:intergenic | 45.0% | |
| TACACAGAAATTCTCCTCCC+AGG | - | chr3.2:92601486-92601505 | None:intergenic | 45.0% | |
| TCCAACACCTTCGTTGTGTT+GGG | + | chr3.2:92602511-92602530 | MS.gene68786:intron | 45.0% | |
| TGATTTAGTCCCACTTTGCC+TGG | + | chr3.2:92602545-92602564 | MS.gene68786:intron | 45.0% | |
| TGCCTTAATTAGGCAGCTAG+GGG | - | chr3.2:92602790-92602809 | None:intergenic | 45.0% | |
| TGCTTGTATAGACATGACGG+TGG | + | chr3.2:92602166-92602185 | MS.gene68786:CDS | 45.0% | |
| TGTTGGTATCCACGGTTTAG+AGG | - | chr3.2:92600376-92600395 | None:intergenic | 45.0% | |
| TTCGTGTCCGTTGGTATTAC+TGG | + | chr3.2:92600439-92600458 | MS.gene68786:CDS | 45.0% | |
| TTGGGTAGCAGTTACCTTAC+TGG | + | chr3.2:92602597-92602616 | MS.gene68786:intron | 45.0% | |
| TTTCGCATCGTCTACACTTC+AGG | + | chr3.2:92602693-92602712 | MS.gene68786:intron | 45.0% | |
| ! | GTAGTGACGATGAGTGGTTT+TGG | - | chr3.2:92601871-92601890 | None:intergenic | 45.0% |
| !! | TAGGGGTGATGAGTTTTGGT+GGG | - | chr3.2:92601805-92601824 | None:intergenic | 45.0% |
| !! | TCCGAAGAGCACTTATCCTA+AGG | + | chr3.2:92601957-92601976 | MS.gene68786:intron | 45.0% |
| !! | TTAGGGGTGATGAGTTTTGG+TGG | - | chr3.2:92601806-92601825 | None:intergenic | 45.0% |
| !! | TTCCTTAGCTCTAAGGTCCT+GGG | + | chr3.2:92601466-92601485 | MS.gene68786:intron | 45.0% |
| !!! | CTCAGGTTTGGTTTTAGGAC+CGG | - | chr3.2:92601932-92601951 | None:intergenic | 45.0% |
| !!! | GGACCGGGTGTTTTATTTTG+AGG | - | chr3.2:92601916-92601935 | None:intergenic | 45.0% |
| !!! | GTGAAGGGGTCTGTTTTTAG+GGG | - | chr3.2:92601822-92601841 | None:intergenic | 45.0% |
| !!! | TCAGGTTTGGTTTTAGGACC+GGG | - | chr3.2:92601931-92601950 | None:intergenic | 45.0% |
| !!! | TGTGGCTCAGGTTTGGTTTT+AGG | - | chr3.2:92601937-92601956 | None:intergenic | 45.0% |
| !! | TATAAATTGTAAAAAATAAA+AGG | + | chr3.2:92601229-92601248 | MS.gene68786:intron | 5.0% |
| AATCAGTGCAGCGATCACAC+TGG | - | chr3.2:92600890-92600909 | None:intergenic | 50.0% | |
| ATATGTCTTTCGCACCCGTC+TGG | + | chr3.2:92601343-92601362 | MS.gene68786:intron | 50.0% | |
| CGGGTGCGAAAGACATATCA+TGG | - | chr3.2:92601341-92601360 | None:intergenic | 50.0% | |
| CTCCAACACCTTCGTTGTGT+TGG | + | chr3.2:92602510-92602529 | MS.gene68786:intron | 50.0% | |
| CTCCCCTAGCTGCCTAATTA+AGG | + | chr3.2:92602785-92602804 | MS.gene68786:intron | 50.0% | |
| CTTAATTAGGCAGCTAGGGG+AGG | - | chr3.2:92602787-92602806 | None:intergenic | 50.0% | |
| CTTCACACCCAACACAACGA+AGG | - | chr3.2:92602521-92602540 | None:intergenic | 50.0% | |
| GCCATATGTCCAGGCAAAGT+GGG | - | chr3.2:92602557-92602576 | None:intergenic | 50.0% | |
| GCGTCATTTCCATGGCTCAA+AGG | + | chr3.2:92600485-92600504 | MS.gene68786:CDS | 50.0% | |
| GGATAAGTGCTCTTCGGATG+TGG | - | chr3.2:92601955-92601974 | None:intergenic | 50.0% | |
| GGGATGCATAGCTGCAATGA+AGG | - | chr3.2:92602822-92602841 | None:intergenic | 50.0% | |
| TATCAAAGATCTCGGAGGCC+AGG | - | chr3.2:92602372-92602391 | None:intergenic | 50.0% | |
| TCCCACTTTGCCTGGACATA+TGG | + | chr3.2:92602553-92602572 | MS.gene68786:intron | 50.0% | |
| TCGTTGTGTTGGGTGTGAAG+AGG | + | chr3.2:92602521-92602540 | MS.gene68786:intron | 50.0% | |
| TGCCATATGTCCAGGCAAAG+TGG | - | chr3.2:92602558-92602577 | None:intergenic | 50.0% | |
| TGGGCAGCTGTTTGATCCTT+AGG | - | chr3.2:92601976-92601995 | None:intergenic | 50.0% | |
| TGTCCGTTGGTATTACTGGC+CGG | + | chr3.2:92600443-92600462 | MS.gene68786:CDS | 50.0% | |
| ! | ACCCAACACAACGAAGGTGT+TGG | - | chr3.2:92602515-92602534 | None:intergenic | 50.0% |
| ! | AGTGTGATCGCTGCACTGAT+TGG | + | chr3.2:92600889-92600908 | MS.gene68786:CDS | 50.0% |
| !! | CAACACAACGAAGGTGTTGG+AGG | - | chr3.2:92602512-92602531 | None:intergenic | 50.0% |
| !! | CTTCCTTAGCTCTAAGGTCC+TGG | + | chr3.2:92601465-92601484 | MS.gene68786:intron | 50.0% |
| AACTTGTGCCCTCAAGGCAC+AGG | + | chr3.2:92601598-92601617 | MS.gene68786:intron | 55.0% | |
| AAGGGTCGGCGTCATTTCCA+TGG | + | chr3.2:92600477-92600496 | MS.gene68786:CDS | 55.0% | |
| ACAACCCGGATGCTGCAGTT+AGG | - | chr3.2:92602478-92602497 | None:intergenic | 55.0% | |
| ATGCTGCAGTTAGGCGGCTA+GGG | - | chr3.2:92602469-92602488 | None:intergenic | 55.0% | |
| CAAGAGACGTTCGTGTCCGT+TGG | + | chr3.2:92600430-92600449 | MS.gene68786:CDS | 55.0% | |
| CCTCCGGCCAGTAATACCAA+CGG | - | chr3.2:92600449-92600468 | None:intergenic | 55.0% | |
| CGACCCTTCTTTGTCTCCTC+CGG | - | chr3.2:92600465-92600484 | None:intergenic | 55.0% | |
| CGGAGGAGACAAAGAAGGGT+CGG | + | chr3.2:92600463-92600482 | MS.gene68786:CDS | 55.0% | |
| CTCCCAGGACCTTAGAGCTA+AGG | - | chr3.2:92601471-92601490 | None:intergenic | 55.0% | |
| CTTCGGATGTGGCTCAGGTT+TGG | - | chr3.2:92601944-92601963 | None:intergenic | 55.0% | |
| GGGTGAGTAGTGACGATGAG+TGG | - | chr3.2:92601877-92601896 | None:intergenic | 55.0% | |
| TGGCCGGAGGAGACAAAGAA+GGG | + | chr3.2:92600459-92600478 | MS.gene68786:CDS | 55.0% | |
| !! | AGGAGTGAGAGCACCAGTAG+CGG | - | chr3.2:92600649-92600668 | None:intergenic | 55.0% |
| !! | CTTAGCTCTAAGGTCCTGGG+AGG | + | chr3.2:92601469-92601488 | MS.gene68786:intron | 55.0% |
| ACCCGGATGCTGCAGTTAGG+CGG | - | chr3.2:92602475-92602494 | None:intergenic | 60.0% | |
| AGCCGCCTAACTGCAGCATC+CGG | + | chr3.2:92602470-92602489 | MS.gene68786:intron | 60.0% | |
| CCGTTGGTATTACTGGCCGG+AGG | + | chr3.2:92600446-92600465 | MS.gene68786:CDS | 60.0% | |
| CTGGCCGGAGGAGACAAAGA+AGG | + | chr3.2:92600458-92600477 | MS.gene68786:CDS | 60.0% | |
| GATGCTGCAGTTAGGCGGCT+AGG | - | chr3.2:92602470-92602489 | None:intergenic | 60.0% | |
| GTGCTCTTCGGATGTGGCTC+AGG | - | chr3.2:92601949-92601968 | None:intergenic | 60.0% | |
| TGCTGCAGTTAGGCGGCTAG+GGG | - | chr3.2:92602468-92602487 | None:intergenic | 60.0% | |
| GCCGCCTAACTGCAGCATCC+GGG | + | chr3.2:92602471-92602490 | MS.gene68786:intron | 65.0% | |
| GCTAGGGGAGGTCGCAAGGA+TGG | - | chr3.2:92602775-92602794 | None:intergenic | 65.0% | |
| GGCAGCTAGGGGAGGTCGCA+AGG | - | chr3.2:92602779-92602798 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 92600366 | 92603140 | 92600366 | ID=MS.gene68786 |
| chr3.2 | mRNA | 92600366 | 92603140 | 92600366 | ID=MS.gene68786.t1;Parent=MS.gene68786 |
| chr3.2 | exon | 92600366 | 92600682 | 92600366 | ID=MS.gene68786.t1.exon1;Parent=MS.gene68786.t1 |
| chr3.2 | CDS | 92600366 | 92600682 | 92600366 | ID=cds.MS.gene68786.t1;Parent=MS.gene68786.t1 |
| chr3.2 | exon | 92600842 | 92600910 | 92600842 | ID=MS.gene68786.t1.exon2;Parent=MS.gene68786.t1 |
| chr3.2 | CDS | 92600842 | 92600910 | 92600842 | ID=cds.MS.gene68786.t1;Parent=MS.gene68786.t1 |
| chr3.2 | exon | 92602157 | 92602292 | 92602157 | ID=MS.gene68786.t1.exon3;Parent=MS.gene68786.t1 |
| chr3.2 | CDS | 92602157 | 92602292 | 92602157 | ID=cds.MS.gene68786.t1;Parent=MS.gene68786.t1 |
| chr3.2 | exon | 92603114 | 92603140 | 92603114 | ID=MS.gene68786.t1.exon4;Parent=MS.gene68786.t1 |
| chr3.2 | CDS | 92603114 | 92603140 | 92603114 | ID=cds.MS.gene68786.t1;Parent=MS.gene68786.t1 |
| Gene Sequence |
| Protein sequence |
