Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68899.t1 | XP_013463217.1 | 84.3 | 280 | 44 | 0 | 1 | 280 | 102 | 381 | 1.00E-123 | 453 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68899.t1 | A0A072V6I2 | 84.3 | 280 | 44 | 0 | 1 | 280 | 102 | 381 | 7.4e-124 | 453.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene68899.t1 | TR | mTERF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68899.t1 | MTR_2g436400 | 97.143 | 280 | 8 | 0 | 1 | 280 | 102 | 381 | 0.0 | 558 |
MS.gene68899.t1 | MTR_2g437060 | 80.287 | 279 | 55 | 0 | 2 | 280 | 111 | 389 | 5.39e-161 | 453 |
MS.gene68899.t1 | MTR_2g437080 | 70.357 | 280 | 83 | 0 | 1 | 280 | 95 | 374 | 2.61e-138 | 395 |
MS.gene68899.t1 | MTR_2g437030 | 69.643 | 280 | 85 | 0 | 1 | 280 | 181 | 460 | 1.61e-133 | 386 |
MS.gene68899.t1 | MTR_2g436440 | 66.071 | 280 | 95 | 0 | 1 | 280 | 101 | 380 | 1.99e-128 | 370 |
MS.gene68899.t1 | MTR_2g437020 | 66.192 | 281 | 92 | 2 | 2 | 280 | 95 | 374 | 6.89e-128 | 369 |
MS.gene68899.t1 | MTR_2g437040 | 62.143 | 280 | 106 | 0 | 1 | 280 | 95 | 374 | 1.30e-121 | 353 |
MS.gene68899.t1 | MTR_4g119550 | 52.313 | 281 | 133 | 1 | 1 | 280 | 104 | 384 | 1.25e-103 | 307 |
MS.gene68899.t1 | MTR_2g437960 | 51.590 | 283 | 134 | 2 | 1 | 280 | 108 | 390 | 3.36e-97 | 291 |
MS.gene68899.t1 | MTR_2g437960 | 51.590 | 283 | 134 | 2 | 1 | 280 | 108 | 390 | 5.53e-97 | 291 |
MS.gene68899.t1 | MTR_2g437170 | 52.281 | 285 | 131 | 3 | 1 | 280 | 110 | 394 | 2.34e-96 | 289 |
MS.gene68899.t1 | MTR_2g438010 | 50.877 | 285 | 133 | 2 | 1 | 280 | 125 | 407 | 8.74e-96 | 288 |
MS.gene68899.t1 | MTR_2g437150 | 52.143 | 280 | 129 | 3 | 1 | 275 | 110 | 389 | 3.18e-94 | 284 |
MS.gene68899.t1 | MTR_2g437180 | 51.613 | 279 | 130 | 3 | 1 | 276 | 104 | 380 | 1.03e-93 | 282 |
MS.gene68899.t1 | MTR_2g437160 | 50.355 | 282 | 138 | 1 | 1 | 280 | 118 | 399 | 1.52e-92 | 280 |
MS.gene68899.t1 | MTR_2g437120 | 52.330 | 279 | 129 | 2 | 1 | 276 | 106 | 383 | 1.88e-92 | 280 |
MS.gene68899.t1 | MTR_2g437990 | 48.936 | 282 | 142 | 1 | 1 | 280 | 105 | 386 | 1.65e-91 | 278 |
MS.gene68899.t1 | MTR_2g437100 | 52.669 | 281 | 128 | 3 | 1 | 276 | 115 | 395 | 2.43e-91 | 276 |
MS.gene68899.t1 | MTR_2g076320 | 49.129 | 287 | 133 | 2 | 2 | 280 | 106 | 387 | 9.60e-91 | 275 |
MS.gene68899.t1 | MTR_2g437200 | 46.082 | 319 | 124 | 3 | 1 | 276 | 85 | 398 | 1.77e-90 | 274 |
MS.gene68899.t1 | MTR_2g437130 | 47.766 | 291 | 130 | 3 | 1 | 280 | 96 | 375 | 3.34e-90 | 273 |
MS.gene68899.t1 | MTR_2g437240 | 44.969 | 318 | 137 | 2 | 1 | 280 | 85 | 402 | 5.19e-89 | 271 |
MS.gene68899.t1 | MTR_2g438020 | 45.860 | 314 | 132 | 2 | 1 | 276 | 124 | 437 | 1.47e-86 | 267 |
MS.gene68899.t1 | MTR_2g437260 | 45.126 | 277 | 150 | 1 | 1 | 275 | 89 | 365 | 3.81e-84 | 258 |
MS.gene68899.t1 | MTR_2g436460 | 46.209 | 277 | 148 | 1 | 1 | 276 | 100 | 376 | 1.27e-83 | 256 |
MS.gene68899.t1 | MTR_2g019840 | 47.518 | 282 | 144 | 3 | 1 | 280 | 96 | 375 | 1.40e-81 | 251 |
MS.gene68899.t1 | MTR_2g437940 | 47.857 | 280 | 121 | 2 | 1 | 280 | 104 | 358 | 4.03e-80 | 246 |
MS.gene68899.t1 | MTR_2g437090 | 69.136 | 162 | 50 | 0 | 119 | 280 | 1 | 162 | 4.30e-78 | 234 |
MS.gene68899.t1 | MTR_2g019810 | 45.000 | 280 | 150 | 3 | 1 | 278 | 84 | 361 | 4.19e-76 | 236 |
MS.gene68899.t1 | MTR_4g120380 | 43.796 | 274 | 154 | 0 | 1 | 274 | 97 | 370 | 1.59e-75 | 235 |
MS.gene68899.t1 | MTR_4g119580 | 43.066 | 274 | 156 | 0 | 1 | 274 | 97 | 370 | 1.49e-74 | 233 |
MS.gene68899.t1 | MTR_4g120380 | 44.094 | 254 | 142 | 0 | 1 | 254 | 97 | 350 | 1.28e-69 | 221 |
MS.gene68899.t1 | MTR_2g437160 | 53.571 | 196 | 88 | 1 | 88 | 280 | 113 | 308 | 4.50e-66 | 209 |
MS.gene68899.t1 | MTR_4g119570 | 38.462 | 247 | 119 | 2 | 26 | 272 | 14 | 227 | 1.51e-51 | 169 |
MS.gene68899.t1 | MTR_3g450500 | 31.802 | 283 | 183 | 4 | 2 | 276 | 92 | 372 | 2.14e-42 | 149 |
MS.gene68899.t1 | MTR_2g436370 | 74.737 | 95 | 24 | 0 | 1 | 95 | 101 | 195 | 6.48e-40 | 138 |
MS.gene68899.t1 | MTR_4g007490 | 30.282 | 284 | 191 | 4 | 1 | 278 | 90 | 372 | 6.78e-36 | 132 |
MS.gene68899.t1 | MTR_2g436380 | 55.752 | 113 | 43 | 3 | 119 | 231 | 1 | 106 | 3.83e-31 | 117 |
MS.gene68899.t1 | MTR_8g080990 | 28.519 | 270 | 189 | 3 | 4 | 270 | 100 | 368 | 2.21e-29 | 114 |
MS.gene68899.t1 | MTR_8g081000 | 25.632 | 277 | 203 | 2 | 1 | 274 | 109 | 385 | 7.00e-26 | 105 |
MS.gene68899.t1 | MTR_8g081000 | 25.632 | 277 | 203 | 2 | 1 | 274 | 109 | 385 | 8.57e-26 | 105 |
MS.gene68899.t1 | MTR_8g081000 | 25.632 | 277 | 203 | 2 | 1 | 274 | 109 | 385 | 1.10e-25 | 105 |
MS.gene68899.t1 | MTR_3g085240 | 62.264 | 53 | 20 | 0 | 178 | 230 | 176 | 228 | 7.27e-16 | 75.9 |
MS.gene68899.t1 | MTR_4g119615 | 60.000 | 50 | 20 | 0 | 218 | 267 | 26 | 75 | 3.38e-14 | 67.4 |
MS.gene68899.t1 | MTR_2g019830 | 52.857 | 70 | 32 | 1 | 207 | 276 | 131 | 199 | 1.46e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68899.t1 | AT5G07900 | 35.125 | 279 | 175 | 3 | 1 | 273 | 121 | 399 | 3.97e-52 | 175 |
MS.gene68899.t1 | AT1G21150 | 29.123 | 285 | 192 | 5 | 1 | 277 | 72 | 354 | 1.56e-34 | 128 |
MS.gene68899.t1 | AT1G21150 | 29.123 | 285 | 192 | 5 | 1 | 277 | 108 | 390 | 3.19e-34 | 128 |
MS.gene68899.t1 | AT1G21150 | 29.123 | 285 | 192 | 5 | 1 | 277 | 172 | 454 | 6.75e-34 | 128 |
MS.gene68899.t1 | AT1G61980 | 26.557 | 305 | 181 | 6 | 1 | 265 | 104 | 405 | 3.26e-26 | 106 |
MS.gene68899.t1 | AT1G61980 | 26.557 | 305 | 181 | 6 | 1 | 265 | 104 | 405 | 3.26e-26 | 106 |
MS.gene68899.t1 | AT1G61980 | 26.557 | 305 | 181 | 6 | 1 | 265 | 104 | 405 | 3.26e-26 | 106 |
MS.gene68899.t1 | AT5G64950 | 29.825 | 285 | 180 | 6 | 6 | 274 | 96 | 376 | 1.80e-23 | 99.0 |
MS.gene68899.t1 | AT1G61970 | 26.421 | 299 | 177 | 6 | 1 | 259 | 104 | 399 | 2.52e-23 | 99.0 |
MS.gene68899.t1 | AT1G61970 | 26.421 | 299 | 177 | 6 | 1 | 259 | 104 | 399 | 2.52e-23 | 99.0 |
MS.gene68899.t1 | AT1G61970 | 26.421 | 299 | 177 | 6 | 1 | 259 | 104 | 399 | 2.52e-23 | 99.0 |
MS.gene68899.t1 | AT1G61970 | 26.421 | 299 | 177 | 6 | 1 | 259 | 104 | 399 | 2.52e-23 | 99.0 |
MS.gene68899.t1 | AT1G61970 | 26.421 | 299 | 177 | 6 | 1 | 259 | 104 | 399 | 2.52e-23 | 99.0 |
MS.gene68899.t1 | AT1G61970 | 26.421 | 299 | 177 | 6 | 1 | 259 | 104 | 399 | 2.52e-23 | 99.0 |
MS.gene68899.t1 | AT1G61970 | 26.421 | 299 | 177 | 6 | 1 | 259 | 104 | 399 | 2.52e-23 | 99.0 |
MS.gene68899.t1 | AT1G62010 | 25.000 | 284 | 172 | 6 | 20 | 265 | 109 | 389 | 2.71e-22 | 95.9 |
MS.gene68899.t1 | AT1G62120 | 25.733 | 307 | 183 | 7 | 1 | 265 | 108 | 411 | 1.09e-21 | 94.4 |
MS.gene68899.t1 | AT1G61990 | 25.714 | 315 | 182 | 7 | 1 | 273 | 104 | 408 | 1.29e-18 | 85.5 |
MS.gene68899.t1 | AT1G61990 | 25.714 | 315 | 182 | 7 | 1 | 273 | 104 | 408 | 1.29e-18 | 85.5 |
MS.gene68899.t1 | AT3G46950 | 29.798 | 198 | 122 | 3 | 1 | 191 | 104 | 291 | 1.07e-16 | 80.1 |
MS.gene68899.t1 | AT1G62110 | 26.263 | 198 | 131 | 3 | 1 | 189 | 104 | 295 | 4.88e-14 | 72.0 |
MS.gene68899.t1 | AT1G62085 | 26.316 | 342 | 172 | 13 | 1 | 265 | 107 | 445 | 4.96e-14 | 72.0 |
MS.gene68899.t1 | AT1G62085 | 26.316 | 342 | 172 | 13 | 1 | 265 | 107 | 445 | 4.96e-14 | 72.0 |
MS.gene68899.t1 | AT1G61960 | 28.796 | 191 | 134 | 2 | 1 | 189 | 104 | 294 | 1.12e-13 | 71.2 |
MS.gene68899.t1 | AT5G23930 | 20.242 | 331 | 196 | 7 | 1 | 264 | 107 | 436 | 1.58e-12 | 67.8 |
MS.gene68899.t1 | AT1G62150 | 26.289 | 194 | 134 | 4 | 1 | 188 | 110 | 300 | 8.74e-11 | 62.4 |
Find 46 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAATCTGACAAGGAAATTT+TGG | 0.116874 | 2.4:-55042192 | MS.gene68899:CDS |
TAAATTTAGTGATGAACTTT+TGG | 0.199642 | 2.4:-55041821 | MS.gene68899:CDS |
GTAAAGGAATTAAAGGATTT+GGG | 0.236314 | 2.4:-55042017 | MS.gene68899:CDS |
AGACCAACCCCATTTCTTAA+AGG | 0.251614 | 2.4:+55041908 | None:intergenic |
GGTATTGTTTACTGTTGTTT+TGG | 0.253046 | 2.4:+55041953 | None:intergenic |
GGTAAAGGAATTAAAGGATT+TGG | 0.272443 | 2.4:-55042018 | MS.gene68899:CDS |
AAACTTAATGACAAAATATA+AGG | 0.279924 | 2.4:+55041756 | None:intergenic |
ATGGATGTTAACATAGAATA+AGG | 0.283748 | 2.4:+55041852 | None:intergenic |
AAACTTTGGCAACACAGTTT+TGG | 0.307791 | 2.4:+55042343 | None:intergenic |
TGACAAAATATAAGGTTGTT+TGG | 0.318444 | 2.4:+55041764 | None:intergenic |
CAAGTCGGTAAAGGAATTAA+AGG | 0.349745 | 2.4:-55042024 | MS.gene68899:CDS |
TTGGGTCAATCAGTTGGGTT+GGG | 0.365374 | 2.4:-55041802 | MS.gene68899:CDS |
AAGTTGATGCCTTTAAGAAA+TGG | 0.366199 | 2.4:-55041917 | MS.gene68899:CDS |
AGTTGATGCCTTTAAGAAAT+GGG | 0.371481 | 2.4:-55041916 | MS.gene68899:CDS |
GTCAGAGGTAGAAGCGCCTT+TGG | 0.405353 | 2.4:+55042307 | None:intergenic |
AACTTATCAGTCACTACAAA+TGG | 0.416436 | 2.4:+55041648 | None:intergenic |
CATCAACTTTCTCTTTCCAT+AGG | 0.426803 | 2.4:+55041931 | None:intergenic |
GGTTTGCAGGAAAGCAGCTC+TGG | 0.441213 | 2.4:+55042368 | None:intergenic |
ATCACAATGCTGATTGAGAA+TGG | 0.457142 | 2.4:-55042116 | MS.gene68899:CDS |
AATAGTCCCAGCCTATGAAT+TGG | 0.461317 | 2.4:-55042228 | MS.gene68899:CDS |
GGAAAGCAGCTCTGGCATCT+TGG | 0.471973 | 2.4:+55042376 | None:intergenic |
GAATCTGTACACCAATTCAT+AGG | 0.473956 | 2.4:+55042217 | None:intergenic |
TTTGGGTCAATCAGTTGGGT+TGG | 0.480856 | 2.4:-55041803 | MS.gene68899:CDS |
CTGTACACCAATTCATAGGC+TGG | 0.485721 | 2.4:+55042221 | None:intergenic |
CTGGGACTATTTGATTGTTG+AGG | 0.502053 | 2.4:+55042240 | None:intergenic |
TCAGTTGGGTTGGGATGCTA+TGG | 0.506950 | 2.4:-55041793 | MS.gene68899:CDS |
TCACAATGCTGATTGAGAAT+GGG | 0.508211 | 2.4:-55042115 | MS.gene68899:CDS |
AATATAAGGTTGTTTGGCAA+TGG | 0.508469 | 2.4:+55041770 | None:intergenic |
ATCAACTTTCTCTTTCCATA+GGG | 0.521600 | 2.4:+55041932 | None:intergenic |
CAACAGTAAACAATACCCTA+TGG | 0.530932 | 2.4:-55041947 | MS.gene68899:CDS |
TGACATGCTCAAGTCGGTAA+AGG | 0.531848 | 2.4:-55042033 | MS.gene68899:CDS |
GTGCAATTTCTTCTCAACAA+AGG | 0.536369 | 2.4:-55041702 | MS.gene68899:CDS |
AATTGCACAACAGCGGCCCT+CGG | 0.562081 | 2.4:+55041717 | None:intergenic |
AGGCTTACATACAAGACTCT+AGG | 0.563542 | 2.4:+55042260 | None:intergenic |
TAAAGGAATTAAAGGATTTG+GGG | 0.564846 | 2.4:-55042016 | MS.gene68899:CDS |
CATTGCTGAGGGAACAGACT+CGG | 0.569500 | 2.4:-55042070 | MS.gene68899:CDS |
GTTGATGCCTTTAAGAAATG+GGG | 0.573670 | 2.4:-55041915 | MS.gene68899:CDS |
CAGATTCTTGCAATCTGACA+AGG | 0.575407 | 2.4:-55042201 | MS.gene68899:CDS |
AAACATTAAATCATTGCTGA+GGG | 0.598387 | 2.4:-55042081 | MS.gene68899:CDS |
ATGCCTTTAAGAAATGGGGT+TGG | 0.598819 | 2.4:-55041911 | MS.gene68899:CDS |
TGTACACCAATTCATAGGCT+GGG | 0.603503 | 2.4:+55042222 | None:intergenic |
CAAACATTAAATCATTGCTG+AGG | 0.611140 | 2.4:-55042082 | MS.gene68899:CDS |
GACAATGTTAACAATGTCAG+AGG | 0.615619 | 2.4:+55042292 | None:intergenic |
CACAATGCTGATTGAGAATG+GGG | 0.632348 | 2.4:-55042114 | MS.gene68899:CDS |
GAGAAGAAATTGCACAACAG+CGG | 0.635644 | 2.4:+55041710 | None:intergenic |
GAGACGTGACATGCTCAAGT+CGG | 0.669830 | 2.4:-55042039 | MS.gene68899:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAACTTAATGACAAAATATA+AGG | + | chr2.4:55042193-55042212 | None:intergenic | 15.0% |
!!! | CACTAAATTTATTTTATCAA+TGG | + | chr2.4:55042116-55042135 | None:intergenic | 15.0% |
!!! | TTATATTTTGTCATTAAGTT+TGG | - | chr2.4:55042192-55042211 | MS.gene68899:CDS | 15.0% |
!!! | AAATTTAGTGATGAACTTTT+GGG | - | chr2.4:55042126-55042145 | MS.gene68899:CDS | 20.0% |
!!! | TAAATTTAGTGATGAACTTT+TGG | - | chr2.4:55042125-55042144 | MS.gene68899:CDS | 20.0% |
!!! | TTATCTTTTAAAGTTGTATG+AGG | - | chr2.4:55042363-55042382 | MS.gene68899:CDS | 20.0% |
! | AAACATTAAATCATTGCTGA+GGG | - | chr2.4:55041865-55041884 | MS.gene68899:CDS | 25.0% |
! | ATGGATGTTAACATAGAATA+AGG | + | chr2.4:55042097-55042116 | None:intergenic | 25.0% |
! | GAGAGAAAAAATTGAAACTT+TGG | + | chr2.4:55041620-55041639 | None:intergenic | 25.0% |
! | GTAAAGGAATTAAAGGATTT+GGG | - | chr2.4:55041929-55041948 | MS.gene68899:CDS | 25.0% |
! | TAAAGGAATTAAAGGATTTG+GGG | - | chr2.4:55041930-55041949 | MS.gene68899:CDS | 25.0% |
! | TGACAAAATATAAGGTTGTT+TGG | + | chr2.4:55042185-55042204 | None:intergenic | 25.0% |
! | TGTCATTAAGTTTGGAAAAA+AGG | - | chr2.4:55042200-55042219 | MS.gene68899:CDS | 25.0% |
!! | AATCCTTCAAAAACAACTTT+TGG | - | chr2.4:55041956-55041975 | MS.gene68899:CDS | 25.0% |
!!! | TATAAAACGTTTTGAGAATG+AGG | - | chr2.4:55042336-55042355 | MS.gene68899:CDS | 25.0% |
!!! | TTTCAATTTTTTCTCTCCAA+AGG | - | chr2.4:55041623-55041642 | MS.gene68899:CDS | 25.0% |
AACTTATCAGTCACTACAAA+TGG | + | chr2.4:55042301-55042320 | None:intergenic | 30.0% | |
AATATAAGGTTGTTTGGCAA+TGG | + | chr2.4:55042179-55042198 | None:intergenic | 30.0% | |
ATCAACTTTCTCTTTCCATA+GGG | + | chr2.4:55042017-55042036 | None:intergenic | 30.0% | |
CAAACATTAAATCATTGCTG+AGG | - | chr2.4:55041864-55041883 | MS.gene68899:CDS | 30.0% | |
GGTAAAGGAATTAAAGGATT+TGG | - | chr2.4:55041928-55041947 | MS.gene68899:CDS | 30.0% | |
! | AGTTGATGCCTTTAAGAAAT+GGG | - | chr2.4:55042030-55042049 | MS.gene68899:CDS | 30.0% |
!! | AAGTTGATGCCTTTAAGAAA+TGG | - | chr2.4:55042029-55042048 | MS.gene68899:CDS | 30.0% |
!! | GGTATTGTTTACTGTTGTTT+TGG | + | chr2.4:55041996-55042015 | None:intergenic | 30.0% |
!!! | ACACCAAAAGTTGTTTTTGA+AGG | + | chr2.4:55041962-55041981 | None:intergenic | 30.0% |
CAACAGTAAACAATACCCTA+TGG | - | chr2.4:55041999-55042018 | MS.gene68899:CDS | 35.0% | |
CAAGTCGGTAAAGGAATTAA+AGG | - | chr2.4:55041922-55041941 | MS.gene68899:CDS | 35.0% | |
CATCAACTTTCTCTTTCCAT+AGG | + | chr2.4:55042018-55042037 | None:intergenic | 35.0% | |
GAATCTGTACACCAATTCAT+AGG | + | chr2.4:55041732-55041751 | None:intergenic | 35.0% | |
GACAATGTTAACAATGTCAG+AGG | + | chr2.4:55041657-55041676 | None:intergenic | 35.0% | |
GTGCAATTTCTTCTCAACAA+AGG | - | chr2.4:55042244-55042263 | MS.gene68899:CDS | 35.0% | |
TATGAGGAAAAACGCAATCT+AGG | - | chr2.4:55042379-55042398 | MS.gene68899:CDS | 35.0% | |
! | AAACTTTGGCAACACAGTTT+TGG | + | chr2.4:55041606-55041625 | None:intergenic | 35.0% |
! | ATCACAATGCTGATTGAGAA+TGG | - | chr2.4:55041830-55041849 | MS.gene68899:CDS | 35.0% |
! | GCAATCTGACAAGGAAATTT+TGG | - | chr2.4:55041754-55041773 | MS.gene68899:CDS | 35.0% |
! | GTTGATGCCTTTAAGAAATG+GGG | - | chr2.4:55042031-55042050 | MS.gene68899:CDS | 35.0% |
! | TCACAATGCTGATTGAGAAT+GGG | - | chr2.4:55041831-55041850 | MS.gene68899:CDS | 35.0% |
!! | AACTTTTGGGTCAATCAGTT+GGG | - | chr2.4:55042139-55042158 | MS.gene68899:CDS | 35.0% |
AATAGTCCCAGCCTATGAAT+TGG | - | chr2.4:55041718-55041737 | MS.gene68899:CDS | 40.0% | |
AGACCAACCCCATTTCTTAA+AGG | + | chr2.4:55042041-55042060 | None:intergenic | 40.0% | |
AGGCTTACATACAAGACTCT+AGG | + | chr2.4:55041689-55041708 | None:intergenic | 40.0% | |
CAGATTCTTGCAATCTGACA+AGG | - | chr2.4:55041745-55041764 | MS.gene68899:CDS | 40.0% | |
CTGGGACTATTTGATTGTTG+AGG | + | chr2.4:55041709-55041728 | None:intergenic | 40.0% | |
GAGAAGAAATTGCACAACAG+CGG | + | chr2.4:55042239-55042258 | None:intergenic | 40.0% | |
GGAAAAAAGGATCATTCCGA+GGG | - | chr2.4:55042213-55042232 | MS.gene68899:CDS | 40.0% | |
TGGAAAAAAGGATCATTCCG+AGG | - | chr2.4:55042212-55042231 | MS.gene68899:CDS | 40.0% | |
TGTACACCAATTCATAGGCT+GGG | + | chr2.4:55041727-55041746 | None:intergenic | 40.0% | |
! | ATGCCTTTAAGAAATGGGGT+TGG | - | chr2.4:55042035-55042054 | MS.gene68899:CDS | 40.0% |
! | CACAATGCTGATTGAGAATG+GGG | - | chr2.4:55041832-55041851 | MS.gene68899:CDS | 40.0% |
!! | GAACTTTTGGGTCAATCAGT+TGG | - | chr2.4:55042138-55042157 | MS.gene68899:CDS | 40.0% |
!!! | TTTGGCAACACAGTTTTGGA+GGG | + | chr2.4:55041602-55041621 | None:intergenic | 40.0% |
CTGTACACCAATTCATAGGC+TGG | + | chr2.4:55041728-55041747 | None:intergenic | 45.0% | |
TGACATGCTCAAGTCGGTAA+AGG | - | chr2.4:55041913-55041932 | MS.gene68899:CDS | 45.0% | |
TTGGGTCAATCAGTTGGGTT+GGG | - | chr2.4:55042144-55042163 | MS.gene68899:CDS | 45.0% | |
TTTGGGTCAATCAGTTGGGT+TGG | - | chr2.4:55042143-55042162 | MS.gene68899:CDS | 45.0% | |
!! | CTTTGGCAACACAGTTTTGG+AGG | + | chr2.4:55041603-55041622 | None:intergenic | 45.0% |
CATTGCTGAGGGAACAGACT+CGG | - | chr2.4:55041876-55041895 | MS.gene68899:CDS | 50.0% | |
GAGACGTGACATGCTCAAGT+CGG | - | chr2.4:55041907-55041926 | MS.gene68899:CDS | 50.0% | |
!! | TCAGTTGGGTTGGGATGCTA+TGG | - | chr2.4:55042153-55042172 | MS.gene68899:CDS | 50.0% |
!!! | CACAGTTTTGGAGGGTTTGC+AGG | + | chr2.4:55041594-55041613 | None:intergenic | 50.0% |
AATTGCACAACAGCGGCCCT+CGG | + | chr2.4:55042232-55042251 | None:intergenic | 55.0% | |
GGTTTGCAGGAAAGCAGCTC+TGG | + | chr2.4:55041581-55041600 | None:intergenic | 55.0% | |
! | GGAAAGCAGCTCTGGCATCT+TGG | + | chr2.4:55041573-55041592 | None:intergenic | 55.0% |
!! | GTCAGAGGTAGAAGCGCCTT+TGG | + | chr2.4:55041642-55041661 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 55041563 | 55042405 | 55041563 | ID=MS.gene68899 |
chr2.4 | mRNA | 55041563 | 55042405 | 55041563 | ID=MS.gene68899.t1;Parent=MS.gene68899 |
chr2.4 | exon | 55041563 | 55042405 | 55041563 | ID=MS.gene68899.t1.exon1;Parent=MS.gene68899.t1 |
chr2.4 | CDS | 55041563 | 55042405 | 55041563 | ID=cds.MS.gene68899.t1;Parent=MS.gene68899.t1 |
Gene Sequence |
Protein sequence |