AlfalfaGEDB | MS.gene68899

M. sativa cultivar XinJiangDaYe / MS.gene68899

KEGG: K15032
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68899.t1	XP_013463217.1	84.3	280	44	0	1	280	102	381	1.00E-123	453

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68899.t1	A0A072V6I2	84.3	280	44	0	1	280	102	381	7.4e-124	453.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene68899.t1	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68899.t1	MTR_2g436400	97.143	280	8	0	1	280	102	381	0.0	558
MS.gene68899.t1	MTR_2g437060	80.287	279	55	0	2	280	111	389	5.39e-161	453
MS.gene68899.t1	MTR_2g437080	70.357	280	83	0	1	280	95	374	2.61e-138	395
MS.gene68899.t1	MTR_2g437030	69.643	280	85	0	1	280	181	460	1.61e-133	386
MS.gene68899.t1	MTR_2g436440	66.071	280	95	0	1	280	101	380	1.99e-128	370
MS.gene68899.t1	MTR_2g437020	66.192	281	92	2	2	280	95	374	6.89e-128	369
MS.gene68899.t1	MTR_2g437040	62.143	280	106	0	1	280	95	374	1.30e-121	353
MS.gene68899.t1	MTR_4g119550	52.313	281	133	1	1	280	104	384	1.25e-103	307
MS.gene68899.t1	MTR_2g437960	51.590	283	134	2	1	280	108	390	3.36e-97	291
MS.gene68899.t1	MTR_2g437960	51.590	283	134	2	1	280	108	390	5.53e-97	291

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68899.t1	AT5G07900	35.125	279	175	3	1	273	121	399	3.97e-52	175
MS.gene68899.t1	AT1G21150	29.123	285	192	5	1	277	72	354	1.56e-34	128
MS.gene68899.t1	AT1G21150	29.123	285	192	5	1	277	108	390	3.19e-34	128
MS.gene68899.t1	AT1G21150	29.123	285	192	5	1	277	172	454	6.75e-34	128
MS.gene68899.t1	AT1G61980	26.557	305	181	6	1	265	104	405	3.26e-26	106
MS.gene68899.t1	AT1G61980	26.557	305	181	6	1	265	104	405	3.26e-26	106
MS.gene68899.t1	AT1G61980	26.557	305	181	6	1	265	104	405	3.26e-26	106
MS.gene68899.t1	AT5G64950	29.825	285	180	6	6	274	96	376	1.80e-23	99.0
MS.gene68899.t1	AT1G61970	26.421	299	177	6	1	259	104	399	2.52e-23	99.0
MS.gene68899.t1	AT1G61970	26.421	299	177	6	1	259	104	399	2.52e-23	99.0

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Find 46 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTAAATCATTGCTGA+GGG	0.598387	2.4:-55042081	MS.gene68899:CDS
AAACTTAATGACAAAATATA+AGG	0.279924	2.4:+55041756	None:intergenic
AAACTTTGGCAACACAGTTT+TGG	0.307791	2.4:+55042343	None:intergenic
AACTTATCAGTCACTACAAA+TGG	0.416436	2.4:+55041648	None:intergenic
AAGTTGATGCCTTTAAGAAA+TGG	0.366199	2.4:-55041917	MS.gene68899:CDS
AATAGTCCCAGCCTATGAAT+TGG	0.461317	2.4:-55042228	MS.gene68899:CDS
AATATAAGGTTGTTTGGCAA+TGG	0.508469	2.4:+55041770	None:intergenic
AATTGCACAACAGCGGCCCT+CGG	0.562081	2.4:+55041717	None:intergenic
AGACCAACCCCATTTCTTAA+AGG	0.251614	2.4:+55041908	None:intergenic
AGGCTTACATACAAGACTCT+AGG	0.563542	2.4:+55042260	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTTATCAGTCACTACAAA+TGG	+	chr2.4:55042301-55042320	None:intergenic	30.0%
AATATAAGGTTGTTTGGCAA+TGG	+	chr2.4:55042179-55042198	None:intergenic	30.0%
ATCAACTTTCTCTTTCCATA+GGG	+	chr2.4:55042017-55042036	None:intergenic	30.0%
CAAACATTAAATCATTGCTG+AGG	-	chr2.4:55041864-55041883	MS.gene68899:CDS	30.0%
GGTAAAGGAATTAAAGGATT+TGG	-	chr2.4:55041928-55041947	MS.gene68899:CDS	30.0%
CAACAGTAAACAATACCCTA+TGG	-	chr2.4:55041999-55042018	MS.gene68899:CDS	35.0%
CAAGTCGGTAAAGGAATTAA+AGG	-	chr2.4:55041922-55041941	MS.gene68899:CDS	35.0%
CATCAACTTTCTCTTTCCAT+AGG	+	chr2.4:55042018-55042037	None:intergenic	35.0%
GAATCTGTACACCAATTCAT+AGG	+	chr2.4:55041732-55041751	None:intergenic	35.0%
GACAATGTTAACAATGTCAG+AGG	+	chr2.4:55041657-55041676	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	55041563	55042405	55041563	ID=MS.gene68899
chr2.4	mRNA	55041563	55042405	55041563	ID=MS.gene68899.t1;Parent=MS.gene68899
chr2.4	exon	55041563	55042405	55041563	ID=MS.gene68899.t1.exon1;Parent=MS.gene68899.t1
chr2.4	CDS	55041563	55042405	55041563	ID=cds.MS.gene68899.t1;Parent=MS.gene68899.t1

Gene Sequence

>MS.gene68899

ATGATTGCCAAGATGCCAGAGCTGCTTTCCTGCAAACCCTCCAAAACTGTGTTGCCAAAGTTTCAATTTTTTCTCTCCAAAGGCGCTTCTACCTCTGACATTGTTAACATTGTCACTAAGACTCCTAGAGTCTTGTATGTAAGCCTCAACAATCAAATAGTCCCAGCCTATGAATTGGTGTACAGATTCTTGCAATCTGACAAGGAAATTTTGGAAAAGTTGAATTACAGTGCAAATTTACTTTGTGATTGTACTGTGCAAAATAACATCACAATGCTGATTGAGAATGGGGTGTCTGACTCAAACATTAAATCATTGCTGAGGGAACAGACTCGGATATTCAAGAGACGTGACATGCTCAAGTCGGTAAAGGAATTAAAGGATTTGGGGTTTAATCCTTCAAAAACAACTTTTGGTGTAGCATTGCATGCCAAAACAACAGTAAACAATACCCTATGGAAAGAGAAAGTTGATGCCTTTAAGAAATGGGGTTGGTCTGAAGAAGATTCTCTCGAAGCATTTAGAAAGAAACCTTATTCTATGTTAACATCCATTGATAAAATAAATTTAGTGATGAACTTTTGGGTCAATCAGTTGGGTTGGGATGCTATGGCCATTGCCAAACAACCTTATATTTTGTCATTAAGTTTGGAAAAAAGGATCATTCCGAGGGCCGCTGTTGTGCAATTTCTTCTCAACAAAGGTTTGACAGATAAGAACGCAAGCTTAACTTATCCATTTGTAGTGACTGATAAGTTGTTTCTTAATATGTTTATAAAACGTTTTGAGAATGAGGCTTCTTATCTTTTAAAGTTGTATGAGGAAAAACGCAATCTAGGATAG

Protein sequence

>MS.gene68899.t1

MIAKMPELLSCKPSKTVLPKFQFFLSKGASTSDIVNIVTKTPRVLYVSLNNQIVPAYELVYRFLQSDKEILEKLNYSANLLCDCTVQNNITMLIENGVSDSNIKSLLREQTRIFKRRDMLKSVKELKDLGFNPSKTTFGVALHAKTTVNNTLWKEKVDAFKKWGWSEEDSLEAFRKKPYSMLTSIDKINLVMNFWVNQLGWDAMAIAKQPYILSLSLEKRIIPRAAVVQFLLNKGLTDKNASLTYPFVVTDKLFLNMFIKRFENEASYLLKLYEEKRNLG