AlfalfaGEDB | MS.gene68970

M. sativa cultivar XinJiangDaYe / MS.gene68970

KEGG: K15601
GO: -
PFAM: PF02373.25 PF10497.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68970.t1	AES92666.1	95.9	847	35	0	1	847	1	847	0.00E+00	1635.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68970.t1	Q9SSE9	41.9	768	308	15	168	846	155	873	3.7e-157	557.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68970.t1	G7JJA9	95.9	847	35	0	1	847	1	847	0.0e+00	1635.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene68970.t1	TR	Jumonji

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene68970.t1	MTR_4g132540	96.104	847	33	0	1	847	1	847	1702
MS.gene68970.t1	MTR_2g024270	60.239	752	238	13	107	847	99	800	857
MS.gene68970.t1	MTR_2g024140	60.193	726	219	10	134	847	1	668	843
MS.gene68970.t1	MTR_1g114150	47.283	736	307	17	157	847	332	1031	640
MS.gene68970.t1	MTR_1g069565	48.148	729	319	16	168	847	144	862	614
MS.gene68970.t1	MTR_1g114130	43.812	808	350	17	106	847	250	1019	610
MS.gene68970.t1	MTR_7g117445	42.765	774	343	16	168	847	140	907	600
MS.gene68970.t1	MTR_7g117445	42.765	774	343	16	168	847	140	907	600
MS.gene68970.t1	MTR_7g117445	42.765	774	343	16	168	847	140	907	600
MS.gene68970.t1	MTR_5g065200	45.703	733	302	16	161	847	133	815	585

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68970.t1	AT1G62310	56.148	732	255	9	147	847	181	877	0.0	808
MS.gene68970.t1	AT1G11950	55.271	702	249	8	168	847	193	851	0.0	781
MS.gene68970.t1	AT1G11950	55.271	702	249	8	168	847	193	851	0.0	781
MS.gene68970.t1	AT1G11950	52.454	652	245	8	168	797	193	801	0.0	684
MS.gene68970.t1	AT4G00990	43.280	744	347	17	168	847	80	812	0.0	549
MS.gene68970.t1	AT4G00990	41.408	710	341	17	168	813	80	778	3.90e-162	491
MS.gene68970.t1	AT4G00990	41.738	702	334	17	168	805	80	770	3.58e-161	489
MS.gene68970.t1	AT3G07610	48.871	487	179	8	388	846	429	873	1.02e-136	432
MS.gene68970.t1	AT3G07610	43.316	187	100	5	168	349	155	340	2.07e-38	155
MS.gene68970.t1	AT3G07610	45.594	522	192	10	372	846	419	895	3.52e-129	413

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Find 0 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGCTCATAGGAACAATTT+GGG	-	32672:6220-6239	None:intergenic	30.0%
AAATACTATGGGATGTTTGA+AGG	+	32672:4940-4959	MS.gene68970:CDS	30.0%
AAATGAGATTCTACATGTTG+TGG	+	32672:7117-7136	MS.gene68970:intron	30.0%
AACTTTAGATGTATTCAGGT+AGG	-	32672:7700-7719	MS.gene68970:intergenic	30.0%
AAGAAATACTAAGATGGCAA+TGG	-	32672:7148-7167	MS.gene68970:intergenic	30.0%
AAGTTCCAATATGTGAATAG+GGG	+	32672:6296-6315	MS.gene68970:CDS	30.0%
ACAGTATCAAAACACTCTTA+TGG	-	32672:6952-6971	MS.gene68970:intergenic	30.0%
ACTTCTTCTATAGACATATC+AGG	-	32672:5618-5637	MS.gene68970:intergenic	30.0%
AGAACATCACGAACAATAAT+TGG	-	32672:6665-6684	MS.gene68970:intergenic	30.0%
AGAAGGAAAAGGAAATACTA+TGG	+	32672:4928-4947	MS.gene68970:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
32672	gene	4782	9000	4782	ID=MS.gene68970
32672	mRNA	4782	9000	4782	ID=MS.gene68970.t1;Parent=MS.gene68970
32672	exon	4782	5258	4782	ID=MS.gene68970.t1.exon1;Parent=MS.gene68970.t1
32672	CDS	4782	5258	4782	ID=cds.MS.gene68970.t1;Parent=MS.gene68970.t1
32672	exon	5380	5492	5380	ID=MS.gene68970.t1.exon2;Parent=MS.gene68970.t1
32672	CDS	5380	5492	5380	ID=cds.MS.gene68970.t1;Parent=MS.gene68970.t1
32672	exon	5611	5710	5611	ID=MS.gene68970.t1.exon3;Parent=MS.gene68970.t1
32672	CDS	5611	5710	5611	ID=cds.MS.gene68970.t1;Parent=MS.gene68970.t1
32672	exon	5829	5961	5829	ID=MS.gene68970.t1.exon4;Parent=MS.gene68970.t1
32672	CDS	5829	5961	5829	ID=cds.MS.gene68970.t1;Parent=MS.gene68970.t1
32672	exon	6037	6097	6037	ID=MS.gene68970.t1.exon5;Parent=MS.gene68970.t1
32672	CDS	6037	6097	6037	ID=cds.MS.gene68970.t1;Parent=MS.gene68970.t1
32672	exon	6175	6811	6175	ID=MS.gene68970.t1.exon6;Parent=MS.gene68970.t1
32672	CDS	6175	6811	6175	ID=cds.MS.gene68970.t1;Parent=MS.gene68970.t1
32672	exon	7254	7583	7254	ID=MS.gene68970.t1.exon7;Parent=MS.gene68970.t1
32672	CDS	7254	7583	7254	ID=cds.MS.gene68970.t1;Parent=MS.gene68970.t1
32672	exon	8061	8471	8061	ID=MS.gene68970.t1.exon8;Parent=MS.gene68970.t1
32672	CDS	8061	8471	8061	ID=cds.MS.gene68970.t1;Parent=MS.gene68970.t1
32672	exon	8555	8627	8555	ID=MS.gene68970.t1.exon9;Parent=MS.gene68970.t1
32672	CDS	8555	8627	8555	ID=cds.MS.gene68970.t1;Parent=MS.gene68970.t1
32672	exon	8706	8791	8706	ID=MS.gene68970.t1.exon10;Parent=MS.gene68970.t1
32672	CDS	8706	8791	8706	ID=cds.MS.gene68970.t1;Parent=MS.gene68970.t1
32672	exon	8881	9000	8881	ID=MS.gene68970.t1.exon11;Parent=MS.gene68970.t1
32672	CDS	8881	9000	8881	ID=cds.MS.gene68970.t1;Parent=MS.gene68970.t1

Gene Sequence

>MS.gene68970

ATGGAGGTAGTAGTTCCTAGACAAGAACAGTCAAATCAACATTCCGAGGATATGTTGAAGTTCTCTGGATGCGCAAAAGCTTTTGGAAATTCAAAGAGAAAGGCTGAAGAATTTCACGAGTGTGGTGGTAATGAGAAATCGGAACCAGAAGGAAAAGGAAATACTATGGGATGTTTGAAGGAGGATACAGTTTCACAAGAAAATTTTGGAATTTCACATAAGAGAAGATTTCAAGAATATCATACACATCATACCGATACAAATTCAAAAGGGCATAAAGATGTTCTGGAATGTTTAAAAGAGACGCCCAATCTAGCATCTAAGAAGAGAGATGGACCAAAGAAGCATGCTGCCTCAAAGAAGAAACAGAAACTTGAAGATGAACTCTTGCTTGACGAACTTGAACAAGATGAAGAAATGTTTTTTCTTCTTAAGACAAAGAGCAGGAGCAGAGCTGGTAGAATCGATAACATAACGGTAACTATCTTTCTCGCTGCCTAATTCCTGCACTTCAAAAGCTAAAACCTTTATGAAAGTTGATTTTAATTGGTGAAATATTATATCACTCTTAATCATGCTTTACTAATTGTCTCAGCAGGGTGTTCAACAAAATACCCGGAAATGTCATCAGTGCATGAAAAAGGAAAGAACATCTTTTGTGCCTTGCACTAAATGTTCAAAAATGTACTGTATGCGATGCATCAATCAATGGTATGGCAATATACATCTAGTTAGTCAATTCTGCTAAGGGTTTATGTATCTGTTTTTTGTTTTCGTGGTTTATAATATGCGATTACAAAATAAAGCTGTTGCTAATTTTTTAATATAGGTACCCTGATATGTCTATAGAAGAAGTTGCTGAAAGTTGCCCATTTTGCATTAAAAATTGCAATTGCAATGTTTGCCTGCGTTCAAAAGGAACAATTAAGGTTTACTTTACTCTGTTATCTACCCCTTAATGAAATTCTGTGATGAAACAAAAATGTCATAGATTAGAATTATATCCATACCAATATCTCTTCAAATTCTTTTTATTTCTACTTTCAGACATCTAACATGGACATCACCAATTATGAAAAAGCTCAGTATCTGCATTACATGATCAACTTACTCCTTCCATATCTGAAACAAATTTGTCATGAACAAAGTGTAGAGGAAGATATAGAAGCAAAAATACAAGGTATTAATCTTCACCTATATTTTTTGTTTTTGTTATTGCATTGAAGAAGTCAACAATAATAATCTCTTCTGTTAGGAAAATCTTCTGAGATTGAGATACCACAAAGTCTCTGTAGTGACAAGGAACGTGTCTATTGGTAAGTGTCCTTTTACTTGAGATAATGGCATGATTCTGTGTTCTACTATATAGTTTAATATTTTGGTTTTGGAGCAGTGATCATTGTGCTACTTCAATCGTTGACCTTCATCGAATCTGCCCAAATTGTTCCTATGAGCTTTGCCTCAAATGTTGCAAAGAAATACGTGATGGAAGCATTACACCCCGAGCTGAGATGAAGTTCCAATATGTGAATAGGGGCTATGATTATATGCATGGTGGTGACCCTCTACCAGTGTCTTGTGATTTAGAGACTTCAAATTGTCATATATCTACCGAGTGTAATGCCAGGAGTGATGGAAGTGTTAGTTGTGTCCCAAAAGAAATGGGGGGTTGTGGTAGTTCTCTGTTGGAGCTGAGGCGCATTCTCCCACATGGGTGGATGTCTGCCTTGGAAGACAAAGCTCGCAGTATGCTGAAAATTTGGGAAATTGAACAAACTACTCTTCGGCATGAAGAAGATGTATCGAGCTATGGTTCAGAATCAAAAAGCAGTTTAAAAGAAGGGATGTTGCTCTTCCGAAAACATTGGACAAATGGTGAACCAATTATTGTTCGTGATGTTCTAAAACATGGGACAGGTCTGAGCTGGGAGCCGATGGTCATGTGGCGAGCATTGTGTGATAATGTGGCTTCAGATATCAGTTCAAAAATGTCAGAAGTGAAGGCCATCGATTGCATGGCTAATTGTGAGGTTTGGCCCCCTTTATTACAGTTTGAAAGTCTTGTCAAATTAAACCATGCATGTTTAAATTTGTAGTGTTTTCTTCCTAAATACCTATGCTATTAGTGTTTTCTTGACTGTATGTGAATTTCTAGTTTTTCAAGGTACCATAAGAGTGTTTTGATACTGTACTTCCCCCCCCTAAGTATATGTATAAAAAATATTACTAAATCTAAGTTGTGTGTCAGTGTGTGTATAGGGCATATACTATTTAGTTTGTTGATTGGGATACTCCATTGTATTATATGCAATGTCTTCCAGATCTTTATTTGTATAAATGAGATTCTACATGTTGTGGAGCTTCCATTGCCATCTTAGTATTTCTTCTTAAATCTTCAATGTAATTAACTTAGTTTGTATTTTGTGCAGCATGCCGAAATTCTAACCAATTCACCCTTCTAAACCTTTGCAGGTTGCAATTAATACTCGTATGTTCTTTAAAGGTTATATAGAGGGAAGAACATATAGTAATCTCTGGCCAGAGATGCTGAAGCTAAAAGACTGGCCCCCTTCTGATAAATTTGAAGATCTTTTGCCCCGACATTGTGAAGAATTTATTCGTTTCTTGCCATTTCAACCGTATACTGATCCTCGGGCTGGAACTCTCAATCTGGCTGTAAAGTTGCCAGCCCATGTTCTAAAACCTGATATGGGTCCAAAAACATATATTGCTTATGGGATTAAAGAAGAACTTGGCAGGGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTATGCTTCAAGAATCACCGAGCTGTAATTTAATTGCTTTAGTATTCTCAGTCCATCCTCCTCCATTGAATATTTTCTCCATAAATCCATTCATTCTTCTTTCTCTCTGAGAACCTACCTGAATACATCTAAAGTTGCACATTGGATTGAAACATAGTTCTCAATGCATCATGATTGCGCTTCATTATTATATTCCACTTTACTTGTCTAAAAGGAATTATTATATGGTTGGAATTTTTAATTTCTTAATGTGTCACTGTATTGTAATGTGGTAGCATAAAATTTTGTTCCCAGAGAATAGTATGCACTTCTCTTGCTACAGAGGGGAGATATGGATATTGAGCATGTATTTTCTTGAGTTGAAAAATGCCCATGCGATGTGCATTTGTTGTTTAGAAACTTTATTTTACTGTGTCAAATTTCAAATGGAAGTATATTTTCTTTTTAATCTAATTTCTAGTTTAATAATTGTCGTAGGTGAATATTTTGACCCATACAGCGGAGGTATTATTAACTGATAGGCAGAAGTCTACTATTTCCAATTTGAAAGAAGCACACAGAGCACAAGATGAGAGAGAACACCGTGCTCCAGAGAGGGCTGATGTATGCCTAAATGGTCGACCTTGCGACAACAGAGAACATATAGAAAATAAGGAGGTATTAGAGTGCAACAATATGGATAACCGTCCTATCGAAATCAGTGGAGATATCTTTCACAATGTGTCTGAGGGGGAAACTTTTCCTACCATTTCTACAGAAAATGAAACAATGGTAACAGGTAGTGCCCTGTGGGATATATTTCGGAGAGAGGACACTGAAAAGTTAGGAGCATATCTTAGAAAACACTCGAAAGAATTCAGGCATACTTATTGTTCACCGGTTGAGCAGGTATTATAATGATTTCTATTTCTGTTTGTTCTTATTTGTAATTTTTAAGGCTTGATGCTCAAATCAAATTCTTTGTTGGTTAGGTTGTACATCCAATTCATGACCAATGTTTTTATTTGACTTTGGAGCACAAGAAGAAGTTGAAGGAGGAGTTTGGTTAGTCCATACTATTTCATATAATTGTTTGCTCAGTTCCTGCAGTTATTAGTTATTAATGTGAATCTCGGCTTTTAGGTGTAGAACCGTGGACTTTTGAGCAAAAACTTGGGGAGGCAGTATTTATTCCTGCTGGATGCCCACATCAAGTCAGGAATCTTAAGGTAAAATATCTCTTGACATATTTGTTTCTTTACTTTCAAACAATTTGATTGTATTTGTAGTCCTAATCATCATATGTCGAACCTTGCAGTCGTGCACAAAGGTTGCTGTAGACTTTGTGTCCCCAGAAAATGTACATGAGTGTCTTCGTTTAACTGAAGAATTCCGTCAGCTTCCCAAGAAACACAAAGCTAGAGAAGATAAACTTGAG

Protein sequence

>MS.gene68970.t1

MEVVVPRQEQSNQHSEDMLKFSGCAKAFGNSKRKAEEFHECGGNEKSEPEGKGNTMGCLKEDTVSQENFGISHKRRFQEYHTHHTDTNSKGHKDVLECLKETPNLASKKRDGPKKHAASKKKQKLEDELLLDELEQDEEMFFLLKTKSRSRAGRIDNITGVQQNTRKCHQCMKKERTSFVPCTKCSKMYCMRCINQWYPDMSIEEVAESCPFCIKNCNCNVCLRSKGTIKTSNMDITNYEKAQYLHYMINLLLPYLKQICHEQSVEEDIEAKIQGKSSEIEIPQSLCSDKERVYCDHCATSIVDLHRICPNCSYELCLKCCKEIRDGSITPRAEMKFQYVNRGYDYMHGGDPLPVSCDLETSNCHISTECNARSDGSVSCVPKEMGGCGSSLLELRRILPHGWMSALEDKARSMLKIWEIEQTTLRHEEDVSSYGSESKSSLKEGMLLFRKHWTNGEPIIVRDVLKHGTGLSWEPMVMWRALCDNVASDISSKMSEVKAIDCMANCEVAINTRMFFKGYIEGRTYSNLWPEMLKLKDWPPSDKFEDLLPRHCEEFIRFLPFQPYTDPRAGTLNLAVKLPAHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVLLTDRQKSTISNLKEAHRAQDEREHRAPERADVCLNGRPCDNREHIENKEVLECNNMDNRPIEISGDIFHNVSEGETFPTISTENETMVTGSALWDIFRREDTEKLGAYLRKHSKEFRHTYCSPVEQVVHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVHECLRLTEEFRQLPKKHKAREDKLE