Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69091.t1 | VVA95181.1 | 82 | 50 | 9 | 0 | 2 | 51 | 765 | 814 | 1.40E-13 | 85.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69091.t1 | Q9C9U5 | 78.0 | 50 | 11 | 0 | 2 | 51 | 771 | 820 | 1.3e-15 | 83.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69091.t1 | A0A072UM67 | 84.0 | 50 | 8 | 0 | 2 | 51 | 435 | 484 | 1.0e-13 | 85.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69091.t1 | MTR_5g015770 | 85.714 | 49 | 7 | 0 | 2 | 50 | 63 | 111 | 1.41e-24 | 88.6 |
| MS.gene69091.t1 | MTR_6g079540 | 84.000 | 50 | 8 | 0 | 2 | 51 | 683 | 732 | 7.76e-23 | 90.1 |
| MS.gene69091.t1 | MTR_6g079540 | 84.000 | 50 | 8 | 0 | 2 | 51 | 435 | 484 | 1.45e-22 | 89.4 |
| MS.gene69091.t1 | MTR_1g081790 | 75.000 | 52 | 13 | 0 | 2 | 53 | 712 | 763 | 2.36e-20 | 83.2 |
| MS.gene69091.t1 | MTR_1g081790 | 75.000 | 52 | 13 | 0 | 2 | 53 | 712 | 763 | 3.45e-20 | 82.8 |
| MS.gene69091.t1 | MTR_8g107000 | 76.000 | 50 | 12 | 0 | 2 | 51 | 752 | 801 | 3.59e-20 | 82.4 |
| MS.gene69091.t1 | MTR_1g016300 | 66.000 | 50 | 17 | 0 | 2 | 51 | 686 | 735 | 2.10e-18 | 77.4 |
| MS.gene69091.t1 | MTR_1g016300 | 66.000 | 50 | 17 | 0 | 2 | 51 | 686 | 735 | 2.34e-18 | 77.4 |
| MS.gene69091.t1 | MTR_2g092980 | 50.000 | 50 | 25 | 0 | 2 | 51 | 580 | 629 | 2.19e-14 | 66.2 |
| MS.gene69091.t1 | MTR_2g092980 | 50.000 | 50 | 25 | 0 | 2 | 51 | 544 | 593 | 2.28e-14 | 66.2 |
| MS.gene69091.t1 | MTR_2g092980 | 50.000 | 50 | 25 | 0 | 2 | 51 | 561 | 610 | 2.28e-14 | 66.2 |
| MS.gene69091.t1 | MTR_2g092980 | 50.000 | 50 | 25 | 0 | 2 | 51 | 525 | 574 | 2.34e-14 | 65.9 |
| MS.gene69091.t1 | MTR_4g080030 | 50.000 | 50 | 25 | 0 | 2 | 51 | 570 | 619 | 2.44e-14 | 65.9 |
| MS.gene69091.t1 | MTR_1g061190 | 56.000 | 50 | 22 | 0 | 2 | 51 | 578 | 627 | 3.15e-14 | 65.9 |
| MS.gene69091.t1 | MTR_2g034020 | 54.000 | 50 | 23 | 0 | 2 | 51 | 489 | 538 | 1.35e-12 | 61.2 |
| MS.gene69091.t1 | MTR_4g122160 | 56.000 | 50 | 22 | 0 | 2 | 51 | 483 | 532 | 2.29e-12 | 60.5 |
| MS.gene69091.t1 | MTR_4g122160 | 56.000 | 50 | 22 | 0 | 2 | 51 | 483 | 532 | 2.30e-12 | 60.5 |
| MS.gene69091.t1 | MTR_3g100090 | 58.000 | 50 | 21 | 0 | 2 | 51 | 676 | 725 | 3.60e-12 | 59.7 |
| MS.gene69091.t1 | MTR_5g023150 | 50.000 | 50 | 25 | 0 | 2 | 51 | 221 | 270 | 5.78e-12 | 59.3 |
| MS.gene69091.t1 | MTR_5g023150 | 50.000 | 50 | 25 | 0 | 2 | 51 | 318 | 367 | 7.89e-12 | 58.9 |
| MS.gene69091.t1 | MTR_5g066490 | 54.000 | 50 | 23 | 0 | 2 | 51 | 669 | 718 | 2.44e-11 | 57.4 |
| MS.gene69091.t1 | MTR_1g050690 | 54.000 | 50 | 23 | 0 | 2 | 51 | 440 | 489 | 4.35e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69091.t1 | AT1G73660 | 78.000 | 50 | 11 | 0 | 2 | 51 | 771 | 820 | 5.82e-22 | 87.8 |
| MS.gene69091.t1 | AT1G18160 | 77.551 | 49 | 11 | 0 | 3 | 51 | 739 | 787 | 2.84e-21 | 85.9 |
| MS.gene69091.t1 | AT1G18160 | 77.551 | 49 | 11 | 0 | 3 | 51 | 739 | 787 | 3.74e-21 | 85.5 |
| MS.gene69091.t1 | AT1G08720 | 74.000 | 50 | 13 | 0 | 2 | 51 | 692 | 741 | 1.57e-19 | 80.9 |
| MS.gene69091.t1 | AT1G08720 | 74.000 | 50 | 13 | 0 | 2 | 51 | 692 | 741 | 1.98e-19 | 80.5 |
| MS.gene69091.t1 | AT5G11850 | 70.000 | 50 | 15 | 0 | 2 | 51 | 632 | 681 | 2.89e-18 | 77.0 |
| MS.gene69091.t1 | AT5G03730 | 60.000 | 50 | 20 | 0 | 2 | 51 | 574 | 623 | 2.93e-15 | 68.6 |
| MS.gene69091.t1 | AT5G03730 | 60.000 | 50 | 20 | 0 | 2 | 51 | 574 | 623 | 2.93e-15 | 68.6 |
| MS.gene69091.t1 | AT3G58640 | 52.000 | 50 | 24 | 0 | 2 | 51 | 576 | 625 | 7.18e-15 | 67.4 |
| MS.gene69091.t1 | AT3G58640 | 52.000 | 50 | 24 | 0 | 2 | 51 | 576 | 625 | 7.18e-15 | 67.4 |
| MS.gene69091.t1 | AT3G06620 | 59.615 | 52 | 21 | 0 | 2 | 53 | 517 | 568 | 1.58e-14 | 66.6 |
| MS.gene69091.t1 | AT2G31010 | 50.000 | 50 | 25 | 0 | 2 | 51 | 542 | 591 | 7.47e-14 | 64.7 |
| MS.gene69091.t1 | AT2G31010 | 50.000 | 50 | 25 | 0 | 2 | 51 | 542 | 591 | 7.47e-14 | 64.7 |
| MS.gene69091.t1 | AT3G06630 | 52.381 | 63 | 26 | 1 | 2 | 64 | 373 | 431 | 5.73e-13 | 62.0 |
| MS.gene69091.t1 | AT5G49470 | 58.000 | 50 | 21 | 0 | 2 | 51 | 227 | 276 | 6.92e-13 | 62.0 |
| MS.gene69091.t1 | AT5G49470 | 58.000 | 50 | 21 | 0 | 2 | 51 | 387 | 436 | 7.01e-13 | 62.0 |
| MS.gene69091.t1 | AT5G49470 | 58.000 | 50 | 21 | 0 | 2 | 51 | 514 | 563 | 7.03e-13 | 62.0 |
| MS.gene69091.t1 | AT5G49470 | 58.000 | 50 | 21 | 0 | 2 | 51 | 514 | 563 | 7.03e-13 | 62.0 |
| MS.gene69091.t1 | AT3G06630 | 52.381 | 63 | 26 | 1 | 2 | 64 | 457 | 515 | 7.44e-13 | 62.0 |
| MS.gene69091.t1 | AT3G06630 | 52.381 | 63 | 26 | 1 | 2 | 64 | 457 | 515 | 7.53e-13 | 62.0 |
| MS.gene69091.t1 | AT3G06630 | 52.381 | 63 | 26 | 1 | 2 | 64 | 457 | 515 | 8.28e-13 | 61.6 |
| MS.gene69091.t1 | AT3G06630 | 52.381 | 63 | 26 | 1 | 2 | 64 | 457 | 515 | 8.28e-13 | 61.6 |
| MS.gene69091.t1 | AT3G06630 | 52.381 | 63 | 26 | 1 | 2 | 64 | 457 | 515 | 8.28e-13 | 61.6 |
| MS.gene69091.t1 | AT5G49470 | 58.000 | 50 | 21 | 0 | 2 | 51 | 514 | 563 | 9.09e-13 | 61.6 |
| MS.gene69091.t1 | AT5G49470 | 58.000 | 50 | 21 | 0 | 2 | 51 | 488 | 537 | 9.26e-13 | 61.6 |
| MS.gene69091.t1 | AT5G49470 | 58.000 | 50 | 21 | 0 | 2 | 51 | 511 | 560 | 9.38e-13 | 61.6 |
| MS.gene69091.t1 | AT3G06630 | 52.381 | 63 | 26 | 1 | 2 | 64 | 457 | 515 | 9.96e-13 | 61.6 |
| MS.gene69091.t1 | AT1G67890 | 56.000 | 50 | 22 | 0 | 2 | 51 | 382 | 431 | 3.03e-12 | 60.1 |
| MS.gene69091.t1 | AT1G67890 | 56.000 | 50 | 22 | 0 | 2 | 51 | 510 | 559 | 3.05e-12 | 60.1 |
| MS.gene69091.t1 | AT1G67890 | 56.000 | 50 | 22 | 0 | 2 | 51 | 510 | 559 | 3.05e-12 | 60.1 |
| MS.gene69091.t1 | AT1G67890 | 56.000 | 50 | 22 | 0 | 2 | 51 | 510 | 559 | 3.05e-12 | 60.1 |
| MS.gene69091.t1 | AT3G06640 | 53.846 | 52 | 24 | 0 | 2 | 53 | 469 | 520 | 4.59e-12 | 59.7 |
| MS.gene69091.t1 | AT3G06640 | 53.846 | 52 | 24 | 0 | 2 | 53 | 469 | 520 | 4.68e-12 | 59.7 |
| MS.gene69091.t1 | AT3G06640 | 53.846 | 52 | 24 | 0 | 2 | 53 | 469 | 520 | 4.68e-12 | 59.7 |
| MS.gene69091.t1 | AT2G42640 | 46.000 | 50 | 27 | 0 | 2 | 51 | 551 | 600 | 3.63e-11 | 57.0 |
| MS.gene69091.t1 | AT2G42640 | 46.000 | 50 | 27 | 0 | 2 | 51 | 513 | 562 | 3.83e-11 | 57.0 |
| MS.gene69091.t1 | AT2G42640 | 46.000 | 50 | 27 | 0 | 2 | 51 | 551 | 600 | 3.91e-11 | 57.0 |
Find 18 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAGTCTTGTAACCAAATT+TGG | 0.143545 | 3.4:+95951611 | None:intergenic |
| GATAGTGTCTTTCAAGTTTC+AGG | 0.198970 | 3.4:-95951499 | MS.gene69091:intron |
| TGTAACTCGACCTCCAAATT+TGG | 0.236188 | 3.4:-95951624 | MS.gene69091:intron |
| TCCAAATGTGGTTCTCTTCA+TGG | 0.369032 | 3.4:-95951651 | MS.gene69091:CDS |
| CCCATGAAGAGAACCACATT+TGG | 0.433145 | 3.4:+95951650 | None:intergenic |
| TATGCTAAGGAGGTTCCATT+TGG | 0.455618 | 3.4:-95951476 | MS.gene69091:CDS |
| TTGTAGGAAGTTGCTGTCAA+AGG | 0.489329 | 3.4:-95952005 | MS.gene69091:intron |
| TGTAGGAAGTTGCTGTCAAA+GGG | 0.496653 | 3.4:-95952004 | MS.gene69091:intron |
| TTCAAGTTTCAGGTATGCTA+AGG | 0.497163 | 3.4:-95951489 | MS.gene69091:CDS |
| GGTACTTCTTGTGAACCAAA+TGG | 0.514888 | 3.4:+95951461 | None:intergenic |
| CCAAATGTGGTTCTCTTCAT+GGG | 0.522890 | 3.4:-95951650 | MS.gene69091:CDS |
| AAGTTTCAGGTATGCTAAGG+AGG | 0.550844 | 3.4:-95951486 | MS.gene69091:CDS |
| AGTCTTGTAACCAAATTTGG+AGG | 0.555282 | 3.4:+95951614 | None:intergenic |
| TCAGAGTAATGAAAAGATTG+AGG | 0.577619 | 3.4:-95951676 | MS.gene69091:CDS |
| AAGATTGAGGCATCCAAATG+TGG | 0.615715 | 3.4:-95951663 | MS.gene69091:CDS |
| TCCATTCAAACAGCAGACAC+AGG | 0.629419 | 3.4:+95951440 | None:intergenic |
| AGATCAAGATATATCTTGTG+AGG | 0.645520 | 3.4:-95951976 | MS.gene69091:CDS |
| ACTTGAAGAATTCATAAGTG+AGG | 0.672706 | 3.4:-95951952 | MS.gene69091:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATAGAATTACAAAT+AGG | - | chr3.4:95951638-95951657 | MS.gene69091:CDS | 10.0% |
| !! | ATAAAATAGAATTACAAATA+GGG | - | chr3.4:95951639-95951658 | MS.gene69091:CDS | 10.0% |
| !!! | TAGTGATACTTTATTTTTTT+TGG | - | chr3.4:95951454-95951473 | MS.gene69091:CDS | 15.0% |
| !! | AAAAACGATTATTATTCGTA+AGG | + | chr3.4:95951835-95951854 | None:intergenic | 20.0% |
| !! | TATATATACCAGAAAACTTA+CGG | - | chr3.4:95952414-95952433 | MS.gene69091:intron | 20.0% |
| !!! | AAATTGTTTCACATTTGTTA+TGG | - | chr3.4:95952608-95952627 | MS.gene69091:intron | 20.0% |
| !!! | AATGCAAAATTGCTTTTTTT+GGG | + | chr3.4:95951703-95951722 | None:intergenic | 20.0% |
| !!! | TATAATAAAGAGTTTTGAGT+GGG | + | chr3.4:95951608-95951627 | None:intergenic | 20.0% |
| !!! | TGTTTCTAATTTCTAAAAAC+CGG | - | chr3.4:95951525-95951544 | MS.gene69091:intron | 20.0% |
| !!! | TTATAATAAAGAGTTTTGAG+TGG | + | chr3.4:95951609-95951628 | None:intergenic | 20.0% |
| ! | AGACTTTATTATTAGTGACT+AGG | - | chr3.4:95952535-95952554 | MS.gene69091:intron | 25.0% |
| ! | TAAGTTCATGTATATCTCTA+TGG | - | chr3.4:95952317-95952336 | MS.gene69091:intron | 25.0% |
| ! | TACGGTATTTAATTGCAAAT+AGG | - | chr3.4:95952432-95952451 | MS.gene69091:intron | 25.0% |
| !! | ATTAAATACCGTAAGTTTTC+TGG | + | chr3.4:95952425-95952444 | None:intergenic | 25.0% |
| !! | GTTTCTAATTTCTAAAAACC+GGG | - | chr3.4:95951526-95951545 | MS.gene69091:intron | 25.0% |
| !! | TAAAGTCTTGTAACCAAATT+TGG | + | chr3.4:95952523-95952542 | None:intergenic | 25.0% |
| !!! | AAAGTTATTCTTTGGTTTGT+AGG | - | chr3.4:95952110-95952129 | MS.gene69091:intron | 25.0% |
| !!! | CAATGCAAAATTGCTTTTTT+TGG | + | chr3.4:95951704-95951723 | None:intergenic | 25.0% |
| AAACCAAAGAATAACTTTGC+TGG | + | chr3.4:95952108-95952127 | None:intergenic | 30.0% | |
| AACCAAAGAATAACTTTGCT+GGG | + | chr3.4:95952107-95952126 | None:intergenic | 30.0% | |
| AAGAAGAATTTCCATGGTTA+TGG | + | chr3.4:95951944-95951963 | None:intergenic | 30.0% | |
| ACTTGAAGAATTCATAAGTG+AGG | - | chr3.4:95952179-95952198 | MS.gene69091:intron | 30.0% | |
| AGAATTCATAAGTGAGGTAT+AGG | - | chr3.4:95952185-95952204 | MS.gene69091:intron | 30.0% | |
| AGATCAAGATATATCTTGTG+AGG | - | chr3.4:95952155-95952174 | MS.gene69091:intron | 30.0% | |
| GAATGCAATCATCTACAATA+AGG | + | chr3.4:95952085-95952104 | None:intergenic | 30.0% | |
| GATTATAGAGCAATCATTTG+TGG | - | chr3.4:95952287-95952306 | MS.gene69091:intron | 30.0% | |
| GTGTTGAAAAAGAAATACAG+TGG | + | chr3.4:95952263-95952282 | None:intergenic | 30.0% | |
| TCAGAGTAATGAAAAGATTG+AGG | - | chr3.4:95952455-95952474 | MS.gene69091:intron | 30.0% | |
| ACACATACACATAGTGAAAG+AGG | + | chr3.4:95952219-95952238 | None:intergenic | 35.0% | |
| CAAATCATTCACCATAACCA+TGG | - | chr3.4:95951930-95951949 | MS.gene69091:intron | 35.0% | |
| CCCCAAAATAAAGTGATTTG+GGG | + | chr3.4:95952051-95952070 | None:intergenic | 35.0% | |
| CGATGAAAGAAGAATTTCCA+TGG | + | chr3.4:95951950-95951969 | None:intergenic | 35.0% | |
| CTACAGCTACATTTAGATGA+TGG | - | chr3.4:95952363-95952382 | MS.gene69091:intron | 35.0% | |
| CTGTAGCATAATCAAGACAT+TGG | + | chr3.4:95952349-95952368 | None:intergenic | 35.0% | |
| GCCCCAAAATAAAGTGATTT+GGG | + | chr3.4:95952052-95952071 | None:intergenic | 35.0% | |
| TGACTAGGTTAACCTTTGTA+CGG | - | chr3.4:95952550-95952569 | MS.gene69091:intron | 35.0% | |
| TGCCCCAAAATAAAGTGATT+TGG | + | chr3.4:95952053-95952072 | None:intergenic | 35.0% | |
| TTCCCAGCAAAGTTATTCTT+TGG | - | chr3.4:95952102-95952121 | MS.gene69091:intron | 35.0% | |
| ! | AGTCTTGTAACCAAATTTGG+AGG | + | chr3.4:95952520-95952539 | None:intergenic | 35.0% |
| ! | GTGAATGATTTGCGATGAAA+GGG | + | chr3.4:95951922-95951941 | None:intergenic | 35.0% |
| ! | TGAATGATTTGCGATGAAAG+GGG | + | chr3.4:95951921-95951940 | None:intergenic | 35.0% |
| ! | TTCAAGTTTCAGGTATGCTA+AGG | - | chr3.4:95952642-95952661 | MS.gene69091:intron | 35.0% |
| ! | TTTCTGAAGGAGGTGATTTA+GGG | + | chr3.4:95952026-95952045 | None:intergenic | 35.0% |
| !! | AGCCCCAAATCACTTTATTT+TGG | - | chr3.4:95952046-95952065 | MS.gene69091:intron | 35.0% |
| !! | GATAGTGTCTTTCAAGTTTC+AGG | - | chr3.4:95952632-95952651 | MS.gene69091:intron | 35.0% |
| !! | TATGTTAACTTGTGCCCTAA+GGG | - | chr3.4:95951663-95951682 | MS.gene69091:CDS | 35.0% |
| !! | TTATGTTAACTTGTGCCCTA+AGG | - | chr3.4:95951662-95951681 | MS.gene69091:CDS | 35.0% |
| !! | TTTTCTGAAGGAGGTGATTT+AGG | + | chr3.4:95952027-95952046 | None:intergenic | 35.0% |
| !!! | CCCCAAATCACTTTATTTTG+GGG | - | chr3.4:95952048-95952067 | MS.gene69091:intron | 35.0% |
| !!! | GCCCCAAATCACTTTATTTT+GGG | - | chr3.4:95952047-95952066 | MS.gene69091:intron | 35.0% |
| !!! | TTTTTTTGGCTTTCTACGAC+AGG | - | chr3.4:95951468-95951487 | MS.gene69091:CDS | 35.0% |
| ACCATAACACCAGAGAAAGT+GGG | - | chr3.4:95951877-95951896 | MS.gene69091:intron | 40.0% | |
| ACCGGGAACTTACTTGATTT+AGG | - | chr3.4:95951543-95951562 | MS.gene69091:intron | 40.0% | |
| CAAAAGAGAACTCCGTACAA+AGG | + | chr3.4:95952565-95952584 | None:intergenic | 40.0% | |
| CAAATCACCATCCATAACCA+TGG | - | chr3.4:95951983-95952002 | MS.gene69091:CDS | 40.0% | |
| CCAAATGTGGTTCTCTTCAT+GGG | - | chr3.4:95952481-95952500 | MS.gene69091:intron | 40.0% | |
| CCCTAAATCAAGTAAGTTCC+CGG | + | chr3.4:95951547-95951566 | None:intergenic | 40.0% | |
| CCGGGAACTTACTTGATTTA+GGG | - | chr3.4:95951544-95951563 | MS.gene69091:intron | 40.0% | |
| CGGGAACTTACTTGATTTAG+GGG | - | chr3.4:95951545-95951564 | MS.gene69091:intron | 40.0% | |
| GGGAACTTACTTGATTTAGG+GGG | - | chr3.4:95951546-95951565 | MS.gene69091:intron | 40.0% | |
| GGTACTTCTTGTGAACCAAA+TGG | + | chr3.4:95952673-95952692 | None:intergenic | 40.0% | |
| TATGCTAAGGAGGTTCCATT+TGG | - | chr3.4:95952655-95952674 | MS.gene69091:intron | 40.0% | |
| TCCAAATGTGGTTCTCTTCA+TGG | - | chr3.4:95952480-95952499 | MS.gene69091:intron | 40.0% | |
| TCGATGGAAAAAGCGATAAG+TGG | + | chr3.4:95951858-95951877 | None:intergenic | 40.0% | |
| TGGTTATGGATGGTGATTTG+CGG | + | chr3.4:95951983-95952002 | None:intergenic | 40.0% | |
| TGTAACTCGACCTCCAAATT+TGG | - | chr3.4:95952507-95952526 | MS.gene69091:intron | 40.0% | |
| TGTAGGAAGTTGCTGTCAAA+GGG | - | chr3.4:95952127-95952146 | MS.gene69091:intron | 40.0% | |
| TTCCTTAACATGTGCCCTTA+GGG | + | chr3.4:95951680-95951699 | None:intergenic | 40.0% | |
| TTCCTTAACATGTGCCTAGA+GGG | - | chr3.4:95951793-95951812 | MS.gene69091:intron | 40.0% | |
| TTGTAGGAAGTTGCTGTCAA+AGG | - | chr3.4:95952126-95952145 | MS.gene69091:intron | 40.0% | |
| ! | AAGATTGAGGCATCCAAATG+TGG | - | chr3.4:95952468-95952487 | MS.gene69091:intron | 40.0% |
| ! | AAGTTTCAGGTATGCTAAGG+AGG | - | chr3.4:95952645-95952664 | MS.gene69091:intron | 40.0% |
| ! | GGTGAATGATTTGCGATGAA+AGG | + | chr3.4:95951923-95951942 | None:intergenic | 40.0% |
| !! | AATGTTAACTTGTGCCCTCT+AGG | + | chr3.4:95951810-95951829 | None:intergenic | 40.0% |
| !! | GTGATTTAGGGCTTTTCTGA+AGG | + | chr3.4:95952014-95952033 | None:intergenic | 40.0% |
| !! | TGAAGGATTAGCCATGGTTA+TGG | + | chr3.4:95951997-95952016 | None:intergenic | 40.0% |
| !!! | CTTTTCTGAAGGATTAGCCA+TGG | + | chr3.4:95952003-95952022 | None:intergenic | 40.0% |
| CCCATGAAGAGAACCACATT+TGG | + | chr3.4:95952484-95952503 | None:intergenic | 45.0% | |
| GAATGGTTTCCCACTTTCTC+TGG | + | chr3.4:95951889-95951908 | None:intergenic | 45.0% | |
| GACCATAACACCAGAGAAAG+TGG | - | chr3.4:95951876-95951895 | MS.gene69091:intron | 45.0% | |
| GTTCCTTAACATGTGCCCTT+AGG | + | chr3.4:95951681-95951700 | None:intergenic | 45.0% | |
| GTTCCTTAACATGTGCCTAG+AGG | - | chr3.4:95951792-95951811 | MS.gene69091:intron | 45.0% | |
| ! | ATGATTTGCGATGAAAGGGG+AGG | + | chr3.4:95951918-95951937 | None:intergenic | 45.0% |
| ! | ATGGTGATTTGCGGTGATGA+TGG | + | chr3.4:95951974-95951993 | None:intergenic | 45.0% |
| ! | TCCCACTTTCTCTGGTGTTA+TGG | + | chr3.4:95951881-95951900 | None:intergenic | 45.0% |
| ! | TGATTTGCGATGAAAGGGGA+GGG | + | chr3.4:95951917-95951936 | None:intergenic | 45.0% |
| !! | ATTTGGGGCTTTTCTGAAGG+AGG | + | chr3.4:95952036-95952055 | None:intergenic | 45.0% |
| !! | GGATTAGCCATGGTTATGGA+TGG | + | chr3.4:95951993-95952012 | None:intergenic | 45.0% |
| !! | GTGATTTGGGGCTTTTCTGA+AGG | + | chr3.4:95952039-95952058 | None:intergenic | 45.0% |
| !! | TTCTCTGGTGTTATGGTCGA+TGG | + | chr3.4:95951874-95951893 | None:intergenic | 45.0% |
| TGCCCTCTAGGCACATGTTA+AGG | + | chr3.4:95951798-95951817 | None:intergenic | 50.0% | |
| ! | TGCCCTAAGGGCACATGTTA+AGG | - | chr3.4:95951675-95951694 | MS.gene69091:CDS | 50.0% |
| CGACAGGTCATGCGACAGTT+TGG | - | chr3.4:95951484-95951503 | MS.gene69091:CDS | 55.0% | |
| TGCGATGAAAGGGGAGGGAT+GGG | + | chr3.4:95951912-95951931 | None:intergenic | 55.0% | |
| TTGCGATGAAAGGGGAGGGA+TGG | + | chr3.4:95951913-95951932 | None:intergenic | 55.0% | |
| GAAAGGGGAGGGATGGGGAA+TGG | + | chr3.4:95951906-95951925 | None:intergenic | 60.0% | |
| GCGATGAAAGGGGAGGGATG+GGG | + | chr3.4:95951911-95951930 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 95951445 | 95952708 | 95951445 | ID=MS.gene69091 |
| chr3.4 | mRNA | 95951445 | 95952708 | 95951445 | ID=MS.gene69091.t1;Parent=MS.gene69091 |
| chr3.4 | exon | 95952706 | 95952708 | 95952706 | ID=MS.gene69091.t1.exon1;Parent=MS.gene69091.t1 |
| chr3.4 | CDS | 95952706 | 95952708 | 95952706 | ID=cds.MS.gene69091.t1;Parent=MS.gene69091.t1 |
| chr3.4 | exon | 95951953 | 95952021 | 95951953 | ID=MS.gene69091.t1.exon2;Parent=MS.gene69091.t1 |
| chr3.4 | CDS | 95951953 | 95952021 | 95951953 | ID=cds.MS.gene69091.t1;Parent=MS.gene69091.t1 |
| chr3.4 | exon | 95951625 | 95951699 | 95951625 | ID=MS.gene69091.t1.exon3;Parent=MS.gene69091.t1 |
| chr3.4 | CDS | 95951625 | 95951699 | 95951625 | ID=cds.MS.gene69091.t1;Parent=MS.gene69091.t1 |
| chr3.4 | exon | 95951445 | 95951516 | 95951445 | ID=MS.gene69091.t1.exon4;Parent=MS.gene69091.t1 |
| chr3.4 | CDS | 95951445 | 95951516 | 95951445 | ID=cds.MS.gene69091.t1;Parent=MS.gene69091.t1 |
| Gene Sequence |
| Protein sequence |
