AlfalfaGEDB | MS.gene69192

M. sativa cultivar XinJiangDaYe / MS.gene69192

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69192.t1	XP_013458032.1	97	572	13	3	1	570	1	570	1.90E-302	1047.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69192.t1	Q9LEZ3	45.5	536	236	16	1	521	1	495	1.2e-90	335.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69192.t1	A0A072USK3	97.0	572	13	3	1	570	1	570	1.4e-302	1047.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene69192.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69192.t1	MTR_4g110040	97.028	572	13	3	1	570	1	570	0.0	1133
MS.gene69192.t1	MTR_4g110040	96.774	403	13	0	168	570	36	438	0.0	806
MS.gene69192.t1	MTR_4g110040	84.444	45	5	1	1	43	1	45	3.17e-14	75.5
MS.gene69192.t1	MTR_5g048350	45.483	321	142	8	256	566	35	332	2.49e-75	243
MS.gene69192.t1	MTR_5g048350	43.614	321	139	9	256	566	35	323	3.31e-66	218
MS.gene69192.t1	MTR_7g017320	43.662	284	121	10	253	519	37	298	1.82e-49	175
MS.gene69192.t1	MTR_7g017320	54.054	148	53	4	253	397	37	172	7.66e-38	141

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69192.t1	AT5G08130	48.699	538	215	18	1	521	1	494	1.17e-125	379
MS.gene69192.t1	AT5G08130	48.321	536	221	18	1	521	1	495	5.00e-125	378
MS.gene69192.t1	AT5G08130	48.321	536	221	18	1	521	1	495	5.00e-125	378
MS.gene69192.t1	AT5G08130	48.148	540	219	19	1	521	1	498	2.83e-123	374
MS.gene69192.t1	AT5G08130	48.155	542	217	19	1	521	1	499	1.03e-122	372
MS.gene69192.t1	AT5G08130	47.681	539	220	19	1	521	1	495	5.02e-121	367
MS.gene69192.t1	AT5G08130	48.662	411	164	13	120	521	2	374	3.83e-97	302
MS.gene69192.t1	AT5G08130	48.418	411	166	13	120	521	2	375	1.68e-96	300
MS.gene69192.t1	AT1G69010	44.040	302	127	12	226	521	7	272	1.20e-55	190
MS.gene69192.t1	AT5G38860	37.687	268	129	5	254	519	21	252	6.76e-42	153

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Find 132 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGCTCACCATTGAAGG+AGG	0.629369	8.2:-15989776	MS.gene69192:CDS
AAATTTGGTTGGGAAGAAAT+AGG	0.321463	8.2:+15989941	None:intergenic
AACATTGCTGTTTGCTTCAA+AGG	0.352246	8.2:-15990098	MS.gene69192:CDS
AAGACAATAGATCATCCGTC+TGG	0.528087	8.2:-15989989	MS.gene69192:CDS
AAGATCCTTCTAAGAATCAA+AGG	0.539351	8.2:-15988722	MS.gene69192:CDS
AAGTATGAAGGTTCATTCCA+AGG	0.551145	8.2:-15990581	MS.gene69192:CDS
AATCAAAGGAAGATGCGCTC+TGG	0.532036	8.2:-15988708	MS.gene69192:CDS
AATCTCGTGGCGCAAATGGT+GGG	0.551190	8.2:-15990135	MS.gene69192:CDS
AATGCCAATGTGTGTTTCCA+AGG	0.530445	8.2:-15988878	MS.gene69192:intron
ACACATGCCTTGCAGAGTTC+AGG	0.377988	8.2:-15988976	MS.gene69192:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	15988641	15995989	15988641	ID=MS.gene69192
chr8.2	mRNA	15988641	15995989	15988641	ID=MS.gene69192.t1;Parent=MS.gene69192
chr8.2	exon	15995953	15995989	15995953	ID=MS.gene69192.t1.exon1;Parent=MS.gene69192.t1
chr8.2	CDS	15995953	15995989	15995953	ID=cds.MS.gene69192.t1;Parent=MS.gene69192.t1
chr8.2	exon	15995749	15995826	15995749	ID=MS.gene69192.t1.exon2;Parent=MS.gene69192.t1
chr8.2	CDS	15995749	15995826	15995749	ID=cds.MS.gene69192.t1;Parent=MS.gene69192.t1
chr8.2	exon	15993457	15993858	15993457	ID=MS.gene69192.t1.exon3;Parent=MS.gene69192.t1
chr8.2	CDS	15993457	15993858	15993457	ID=cds.MS.gene69192.t1;Parent=MS.gene69192.t1
chr8.2	exon	15992171	15992270	15992171	ID=MS.gene69192.t1.exon4;Parent=MS.gene69192.t1
chr8.2	CDS	15992171	15992270	15992171	ID=cds.MS.gene69192.t1;Parent=MS.gene69192.t1
chr8.2	exon	15991922	15992049	15991922	ID=MS.gene69192.t1.exon5;Parent=MS.gene69192.t1
chr8.2	CDS	15991922	15992049	15991922	ID=cds.MS.gene69192.t1;Parent=MS.gene69192.t1
chr8.2	exon	15991309	15991417	15991309	ID=MS.gene69192.t1.exon6;Parent=MS.gene69192.t1
chr8.2	CDS	15991309	15991417	15991309	ID=cds.MS.gene69192.t1;Parent=MS.gene69192.t1
chr8.2	exon	15990725	15990794	15990725	ID=MS.gene69192.t1.exon7;Parent=MS.gene69192.t1
chr8.2	CDS	15990725	15990794	15990725	ID=cds.MS.gene69192.t1;Parent=MS.gene69192.t1
chr8.2	exon	15990547	15990642	15990547	ID=MS.gene69192.t1.exon8;Parent=MS.gene69192.t1
chr8.2	CDS	15990547	15990642	15990547	ID=cds.MS.gene69192.t1;Parent=MS.gene69192.t1
chr8.2	exon	15989743	15990188	15989743	ID=MS.gene69192.t1.exon9;Parent=MS.gene69192.t1
chr8.2	CDS	15989743	15990188	15989743	ID=cds.MS.gene69192.t1;Parent=MS.gene69192.t1
chr8.2	exon	15988879	15989014	15988879	ID=MS.gene69192.t1.exon10;Parent=MS.gene69192.t1
chr8.2	CDS	15988879	15989014	15988879	ID=cds.MS.gene69192.t1;Parent=MS.gene69192.t1
chr8.2	exon	15988641	15988751	15988641	ID=MS.gene69192.t1.exon11;Parent=MS.gene69192.t1
chr8.2	CDS	15988641	15988751	15988641	ID=cds.MS.gene69192.t1;Parent=MS.gene69192.t1

Gene Sequence

>MS.gene69192

ATGGAGCTTCCTCAAGCACGTTCTTATGGAGCCGAAGGTAGTTATGATTTTATTATTATATTATTATTTTTTGAAAAAGAAAATCAATAATAATTAATTTGATTTGAATTAATATTGTTTGGATGAGATTTTCTGAAACTTTTCTGTGCGGAAACAGGAACAGGGAGGAAATCGACGCATGATTTTCTGTCGCTATACAGTAATTCAACTGCCGAACAAGATCCAAGGCCATCTGCTCAAGGTACTGTATAATTTGTTTTATAATTTTTGGTTATTGTTATGCAAAATGATTCGGTGTGTGAGATTTTTCTTTCCTCTGTTGTTGCCATGTTTTTCTCTGTGACGTGGGGATCATGGTGTAAAACTAAATATCGTAGTATAAATTCTACATCACGGTCAATTTTCTGCCAAATAATTCAACTGTAAATAAAAGCAGTTATACATCATGCTTGTTCCTGCACGTGACCTGTATTTAATCACAGGATCTGGGCCATGCTTTTTATTTATGGACTGCGTATTAATTATATTATTATTATTTTTAATTAACAAAATTTCCTATGGTGGATTCCGAAGGATTTAACATCAAATGGAAAAGTGTAAATCACAATGTATTTTACACCGTCCGATAAAGTGTGCAGCATGAGGATGGTAGGGGGCCCATTTTGATGGACTTGTAATTGATTTGACATTTCACATCAGGCTCGATAAGGATTGGCATTCCCGTGTGCGTGTGGTGTAGTTTATCTGTTCTTTTCGTTTGCAAAATCACACTAATCTCAGTTCACCAGATTAAGATTTTATAAGAGAATGAAAATGAAAGGCATGCATTTTTGTTGTTTATCTAATATTAGTTATTTTTTTTATAAACCAAGTAACTCTGCGTGCAACTATGGTGATTAATCTAGTTGAATATGATCATGATAAATGAGAAAGTTATCCTTACAAAGAAAATTTGAATTCAAACCTTGGTTAAATTGAAAGAAATTTTTATTATCTCATTAAAATGCAGTTAATCTTCGTTATTGAACTAACACAACATACATCTGTTTACCACTTTTTGCATTTTAGGAAATCCATGAGTGAAAACAATATATATTGTACCCTATACTGTGAGATTTCCTTAAAGAATATAAAGATTTTGGTGTTTTAATTTTGGGCTAAAAACCAGTATAATGGTATTACTATATTCTTTCATATGGACCATTAACTTTCAATTGTTTTAAGATATAAGATCATATTTTTTTTTTAAATTATTTGAAAAATTTGTTTACAAGTAAAATTTACAAGTATGTTTAGTAATTAACTAACAAAATGTTTACCACTTTTTTCATTCTCCTCATTTTTCCATTATTAACTAATAATAGCTAATATTCTATAAATAAATATGGCAGAGTAGAGTTTAAAATAAATTCCTCAAATTAATTAATAATACATGAAAGTTTTTTTTTTTGACAAATAATAATAGATGAAAGTTATAACAAACATGAGTTGAGGATTGTATTTTAATATTAAAATGATTCTTTTTTTTTATTTATAAATTTGATAACTTTAATTGAAACATGTTTGTAAATCAGAACTCAGCACTGATATATGTGTTACTTCAAAAACAAGATTTATATTATGTGTATGTAACAAGTGTATGTTGCAGAAACAAAAAGTTAATTTTACTAAGAAATTTGACATTTGTTTTTGTATTTTATTGTCACATTGTAACAAAAATTAAGCTATAATAAAAAAAAATTAGATTCGTAAAACTATTTAAAAGATGATACAATATTTGTAAAAATAAAAAAATGATGTAAAAATGATTTCATATTCTCCTGAAAATAGTTTTTTATTTTATTTCATATTTTACGAATCCTAAGAAATAGTTTTGAAAACTGGAAAAAGTTAATATTACTTGCCTGCGCACCATTTAATGCACTTACATGTCATATGCTCACGAGTTTTTTGCTTCATGCACCGTATTTAACCAAAAATGAAAACGATATGTATCAGCTTTTCACAGAATCGTTTGCAAGATTTTCGCAGTAGTGTGTTTTTTGTTTTCAAAATTCTTTCGGTTAATTGAAGGAAATTTTACTTCCCTTGACCTGCATGTCATACATTTCCTTCTTTCATGCATGAACAGCAAGTTTCCTCAAGACCCATGATTTCTTGCGGCCACTAGAGGAGGTAGAAGCCAAATCCAGTGCCAAGGAAGAAGCCACAGATGAAATCTCATCGGTGGTTGAGAAGCAACCCCCTTTAACAACACCAGCTTCATCAGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTATAGTATCAGCCACATTAATTCCTGCGTGAATAATAATAATCAAAGGGTTCCAAAGGCAGAAGCATCATCACTTTTCACTGTGCATCAAGCAACTAGTGCGGATAGAAATGATGACAACTCCAACTGCAGCTCACATACTTCAAGCGGTTTCACATTGTGGGAAGAGTCTGAGATTAGAAAGGGAAAGACAGGAAAGGAGAATAATGTTGGGGACAAACCCATTATAGGAGGTAACCATGAAATAATTTTTGAAGATGTTAAGTAAGAAGTATATATATATTTTTTTATTTTGAATCAAGCAAGAAGCATTATTTAAATGGAGAATAATAAGGATAATTCAACCCATTACAACAGCATACACTTTATGCTTTAAACATCCCATAGAATTTGAGCACAAATCAGAATAATATTACAAGATTTTCTACACTCTTTACATATGAACCAACCCCAAGATACTAACACTTTAATTTGAGCTATTACATTAATTACAGCATCACAATTAGCTTTTTTTTTTTTTGTTAACAAAAGCATCACAATTAGCTACTAACCCTTGAAAAACATAAGGACCGGATAATAGCAAACCAAATGAAAATTATTTATTATCTCATATCATAATTGAAAGAGTTTATAAAGAGAGACACTCTTAACTTAAAATAAAAATATGAAAGTAATAGAGATAGAAAATGTTTAGGGCGTCACTTTCCTGCATTTTCTTATGATTTCATATAACGTGCATGGACACACACACACACACATGGCCTAGAAGTATATTTAAAGTAAAAAAACACTACAACATTTTTTGTCAACAACATTGTCTAAAAGTCGTTGCCTAATAATACCCAAAAAAACCGTAGCTTTTACTACTGGAATGGTCTTTGAAGTGATAACTTAAACTGTTAGTTTTTTCTTTCGCCAATGGTTTTGCCTCGCATAATCGATTCATGAAAATAACTGATTGAAAGGGCTTTATTGATTTTATGATATAATTAATACTTGACCCATTATTTTAAAAAATTATCCAATCATACCTGTAATTATTTATCTTATTTTCTTAAAATATATTCCTTGCCAATTTTAGTTGTTTATGTTTGTAACGTGAAATTACGCCTTTTGTCTACACCACGGATGAAAGTCATCTTAATTCGGTAGCTATATAAATTAAACAAGTACAAGAATATAGTGAAAGTACTAATTCATTTACAACATTTGTTCCAATTATTTTCTCGGACGTTCTTCGTACACATGAATGACACTAGATAGGGTGTGGCGGATTACCTGTCTAGGAAGTCAGCTTCAACGTTAATTAGTTAGATTTTGAGGAAAAAAAATGTTGTACTACTAATAACAATGATCAAATATCAATTGTATAGTATTTGCGACGGTAATAACATTTCACAGCACTTTATTATGTGGCAGATTCTGCTGCTAAGTTAGGTCAGTGGACATTGAAGGAGCGAACGTCTCAATCGTTTTCTAACAATCATCATGGCAGCTTCAACTCTCGCTCTTCATCTCAGTAAGTCATATTACTCTGTACAATTTATTTTTAACATTTTTTACTCGGAATAGTTTCCTTTTAAGATGGTTATGTAATTAAATATATGTTTATGCTGAACTTTTTGCACTTGATACAATAGGACAACTGGACAGAAGAACCAGAGTTTTATGGAAATGATGAAATCTGCACAGGATTGTTCCCAGGATGAAGAGCTAGAAAATGAAGGAACGTTTTTTCTCAAGAGAGAATCCTCGAATGTTCAAAGAGGTAATTTCTAATATCTCCTTGTTGAGAAAGGCAGTAGCATGCGCATGCCTCTTTTAAGTTTTATTTCAATAAATTAGAATATTATGAGCTGTCTCAATTAATCAAAGCTAACAGCAAGTTAAATTTGCAAACAATCAATTAATCAACGATAATAACAAGTTAAATTTGCAAACAAAATTTAGAGTGTGATGAAATCATGAAAATATCATTTTAACTTTGTGATGAGGGAATCAGAAACAAATTACATTTATTTTCCTTTAATTATAGTTGCCAAATTTATTTTTTAGTATTATTGAATGTTGATGTTGTAGACTAGCAGTTCCCCTTTTCATTGATCTGACTAACTAGTGTTTTGTAAGTGGTTTTAATATTATGTCTCGGTACTTTAATACATGTGCCACAACGAGTTATATACTCAAAGGGTTTTTATTTGCTTTCTAAATCACTTGTTCGAAAAGATTTTACGAGGTTAACATTACTGAATTATTTGCTGATTATTTACAGGAGAACTAAGGGTGAGAGTGGACGGCAAGAGTACCGATCAAAAGCCAAACACACCAAGATCAAAACATTCTGCAACAGAGCAGCGAAGAAGAAGCAAAATTAATGACAGGTTAGTCTTACCTACTAATATGGTGATAGAATTTTTTTGAATGTTACAAGAGACACTTGCAAACTGCGATGGAGGTGTAAAAAGAACTTCCCTTTTCTTAATTATGAACTGCATGCTTACTCAGTACTCACGTAAATAGTTTAAGAGAAGAATTCCGTGCTATTGGGACTTGGGAGTAGTGTAACTGGAAGGTCCTAATGCTTAACGAGTTAGTTGTACTGTTTTAGTCATAGTTTCATTCTTTTTTAGAAAGGAAAAAAAAAAAAAAAAGGTGTACCCTAAAAATGGCTTTTAGGAAAAGTAACAATGATTCCAATTAAGTGGACTTTATTAGATTTATGGTTTATGGGTTTGCCTTGTTCAGCCACACTTTTACTGGGGTTGGGATTGTCTGGCGGCTTTGGTGAGTGCATTGTATAAGCACTCAGCAGTTATAGAGCATTGTCTGCTTCCATCATTACCTGATTTTATTTGCTCATAATCATCTGATAGAACATTTGAATCAAACATGTAGGTTTCAGATGCTACGAGAGCTTATTCCACACAGTGATCAAAAGAGGGACAAAGCATCCTTTTTGTTAGAGGTAAATTCATACGGTTGGTGAAAATTTTGTTTTTTATATGTGTGTGTTATGCTCATTAATGTTTAATCTAAATTATTTGTAGGTCATTGAGTACATTCACTTTTTACAAGAGAAGGTTCATAAGTATGAAGGTTCATTCCAAGGTTGGAATAACGAGCCAGAAAAACTGATGCCATGGGTAAATACCACACTTTCCTATCTTAAGCTGTGAAAGATTTTATAAAACAAAATAATAGCTTCATTGATGGATTTACTATTTTCTGTACCTCCAGATCATTTTATGAGAAACGTTTGAGTTATATTATTTGTCCTAGACCTAATAGTTTTGATTGTCTGGTCCTTTATTTCTTTATAAACATGATCAGAGGGATTATCATTCAAGTTTGATGTCCTTGTTGGAATTGACTGAGCAAAGAAGATGCTTGTCTTGTTTAAGTGGGTGTATCAATTAGTATCACATAGCCTATTGTTAATGGATTTAAATTTAGAAGTAATAACCATCCAAAAACTGATTCACATTTTTCAATTCAAAGCAGAGAAATAATGACAGGCCAGCAGAAAGTTTTCAATCTCGTGGCGCAAATGGTGGGTCTAATCCATCTCCAACATTGCTGTTTGCTTCAAAGGTTGACGAGAAAAACATCACCATCTCCCCAACAACTCATGGGGGTATCCATAATGTAGAATCTGGCTTGAGCACAACAACGGCCATGAAGACAATAGATCATCCGTCTGGAATAACAAACAAGGCTTTTCCAAGTCCTATTTCTTCCCAACCAAATTTCTTAACTTCAACCCAAATCGGAGGTTTAGGTGGAGCAGTGTCTCAGCTCAGACGTAGATTATCATCTGATGCAGAGAACACCAATTATCAACCTTCAGTAGAATCTCAGACTATGACTTCAACCAGTGAAAAGCTGAAAGAGAAAGAGCTCACCATTGAAGGAGGTGCCATTAGCATATCAAGTGTGTACTCACAAGGGTGAGTGTTTATCTTATAGTATTCATTTGATTAGTGTATAAATTAGAAGACAGTTTATTTCCTTTATACTATTTTGAAGTTGTGTTGGACATGATATGGATTCATCCCCTAGTGAGCATTTGTGGATAGAAATTGGAGATGTGGCAGGTGATTGTGGAAGACATATTCCATCCACAGTCATCTAACAATTCAATATCATACCTACTAATGTATTTATATATTCACCCAGCCATGAGGATTAAAAAACTGTTTGCTGCAAACTTATTGAATTCTGTTTGCAGCCTAAACTTGGACTTACTTCACTGCCTTTCTCTGAATAGATGTCCACTTGTGCAATTCATGTTGCTGTAACTGCAATACTGTGAAAGTCCATAATTTCAATTTGCTTCTTAATAACTCTATTCATTCTTACCTCTTTATGTTATAGTTTACATTTCTTCTGCTAAGATTGTTTGTAGTGCTACCCTGTTCCATTCAAACAATTCATTATACAATATTGATGCTACTATAAATATTTCCACAATATATGGATCAACCTAGCATGTTGTTGGAAAACTTCTAAATTCACTAAAATTCAAAATTTCTTCTTTTGTGATTTTCGAGAACTGCCCATTTTCTTTTCTCGAAATTCTTGCAAATGATAAATGTTGTAATTAGGATGCCAAATTGGTTTTTGTTAGCATTTTCATTTTTTTTTATATCAAAGTAAATGTGCTATACTTGGACAGGTTGTTGGATACACTTACACATGCCTTGCAGAGTTCAGGAGTGGATTTATCACAGGCTAGCATTTCGGTGCAAATTGAACTTGGTAAACAAGCAAGCCTCAGACCAAACATACCAATGCCAATGTGTGTTTCCAAGGTATATTTGCTCAAATTGCCCTTTTGTAAAGTCTTTTTATAAACATTGCTACTTTCGAACATTACATCAAAGCTCCACATTATGAAACCATGTATTATTATCTAATTTGTCGATCATTTTCCCCTAGGATGATGAAGATCCTTCTAAGAATCAAAGGAAGATGCGCTCTGGCTCTAGAGTCACTGGCTCTGAGAAATCTGATCAAGCACTAAAGAAGCTGAAAATGTGCAGAAGTTAA

Protein sequence

>MS.gene69192.t1

MELPQARSYGAEGRKSTHDFLSLYSNSTAEQDPRPSAQASFLKTHDFLRPLEEVEAKSSAKEEATDEISSVVEKQPPLTTPASSVEHLLPGGIGTYSISHINSCVNNNNQRVPKAEASSLFTVHQATSADRNDDNSNCSSHTSSGFTLWEESEIRKGKTGKENNVGDKPIIGDSAAKLGQWTLKERTSQSFSNNHHGSFNSRSSSQTTGQKNQSFMEMMKSAQDCSQDEELENEGTFFLKRESSNVQRGELRVRVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWNNEPEKLMPWRNNDRPAESFQSRGANGGSNPSPTLLFASKVDEKNITISPTTHGGIHNVESGLSTTTAMKTIDHPSGITNKAFPSPISSQPNFLTSTQIGGLGGAVSQLRRRLSSDAENTNYQPSVESQTMTSTSEKLKEKELTIEGGAISISSVYSQGLLDTLTHALQSSGVDLSQASISVQIELGKQASLRPNIPMPMCVSKDDEDPSKNQRKMRSGSRVTGSEKSDQALKKLKMCRS