AlfalfaGEDB | MS.gene69457

M. sativa cultivar XinJiangDaYe / MS.gene69457

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF05920.14 PF07526.14

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69457.t1	XP_013462165.1	87.9	596	59	4	1	592	1	587	1.70E-290	1008.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69457.t1	Q9FWS9	47.0	411	174	9	35	430	50	431	4.2e-83	310.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69457.t1	A0A072VDF1	87.9	596	59	4	1	592	1	587	1.3e-290	1008.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene69457.t1	TF	HB-BELL

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69457.t1	MTR_3g112300	90.772	596	42	5	1	592	1	587	0.0	1105
MS.gene69457.t1	MTR_3g112300	88.235	459	48	2	1	459	1	453	0.0	841
MS.gene69457.t1	MTR_3g112300	93.103	87	4	2	508	592	431	517	5.83e-43	161
MS.gene69457.t1	MTR_3g112300	92.092	392	31	0	1	392	1	392	0.0	757
MS.gene69457.t1	MTR_3g112300	91.644	371	31	0	1	371	1	371	0.0	714
MS.gene69457.t1	MTR_1g023050	61.111	648	175	19	1	592	1	627	0.0	690
MS.gene69457.t1	MTR_4g051532	55.357	280	112	5	162	434	217	490	5.83e-84	277
MS.gene69457.t1	MTR_1g057790	54.064	283	107	6	162	430	161	434	6.42e-84	275
MS.gene69457.t1	MTR_5g018860	48.905	274	121	4	161	423	337	602	4.83e-79	265
MS.gene69457.t1	MTR_8g078480	49.635	274	121	5	158	420	384	651	4.93e-79	266

Showing 1 to 10 of 17 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69457.t1	AT1G19700	47.470	415	173	13	34	428	46	435	3.14e-105	328
MS.gene69457.t1	AT1G19700	47.470	415	173	13	34	428	46	435	3.14e-105	328
MS.gene69457.t1	AT1G19700	47.470	415	173	13	34	428	46	435	3.14e-105	328
MS.gene69457.t1	AT1G19700	47.470	415	173	13	34	428	46	435	3.14e-105	328
MS.gene69457.t1	AT1G19700	47.470	415	173	13	34	428	46	435	3.14e-105	328
MS.gene69457.t1	AT1G75410	45.894	414	174	8	35	430	50	431	2.31e-104	325
MS.gene69457.t1	AT1G75410	45.894	414	174	8	35	430	50	431	2.31e-104	325
MS.gene69457.t1	AT2G16400	44.493	454	168	14	150	592	102	482	4.34e-104	323
MS.gene69457.t1	AT4G34610	44.218	441	182	15	165	592	143	532	8.39e-99	311
MS.gene69457.t1	AT4G34610	44.218	441	182	15	165	592	143	532	8.39e-99	311

Showing 1 to 10 of 35 entries

Previous1 2 3 4Next

Find 120 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTGGTTTGACAAGGAATC+AGG	0.432153	3.3:-92587498	MS.gene69457:intron
AACTTTACAACTGTGGATGG+TGG	0.616544	3.3:-92586986	MS.gene69457:CDS
AAGAAGGAATACCTCGTCTC+CGG	0.574564	3.3:-92587867	MS.gene69457:CDS
AAGAGTTATCTCTTAGTCTC+GGG	0.540585	3.3:-92588874	MS.gene69457:CDS
AAGTGATTCAAAGGAACCTT+GGG	0.404482	3.3:-92587894	MS.gene69457:CDS
AATACCTCGTCTCCGGTACG+TGG	0.579283	3.3:-92587860	MS.gene69457:CDS
AATGTGATAGATTGTGGAAA+TGG	0.412066	3.3:-92587103	MS.gene69457:CDS
AATTCTTGTCGTCTTCCAAA+GGG	0.529186	3.3:-92588776	MS.gene69457:CDS
ACACCACAATTTGCATTCGA+TGG	0.516116	3.3:+92588031	None:intergenic
ACATATGATTTAACAGAGTT+GGG	0.435731	3.3:-92587010	MS.gene69457:CDS

Showing 1 to 10 of 120 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATGTGATAGATTGTGGAAA+TGG	-	chr3.3:92588748-92588767	MS.gene69457:CDS	30.0%
AGTGAAGGATTAGAATTTAG+AGG	+	chr3.3:92588171-92588190	None:intergenic	30.0%
CAACTCTGTTAAATCATATG+TGG	+	chr3.3:92588842-92588861	None:intergenic	30.0%
CACATATGATTTAACAGAGT+TGG	-	chr3.3:92588840-92588859	MS.gene69457:CDS	30.0%
CCTAAACTCTCAATATCTTA+AGG	-	chr3.3:92587254-92587273	MS.gene69457:CDS	30.0%
CCTTAAGATATTGAGAGTTT+AGG	+	chr3.3:92587257-92587276	None:intergenic	30.0%
GAATAATTGTCACACACTAT+CGG	+	chr3.3:92587691-92587710	None:intergenic	30.0%
GATTTCATGACATTACCAAA+AGG	-	chr3.3:92587163-92587182	MS.gene69457:CDS	30.0%
GGATGCAATGCTAAATAATA+TGG	+	chr3.3:92587532-92587551	None:intergenic	30.0%
GGATTGGAATTAGAATCATT+AGG	+	chr3.3:92587429-92587448	None:intergenic	30.0%

Showing 1 to 10 of 172 entries

Previous1 2 3 4 5…18Next

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	92586766	92589107	92586766	ID=MS.gene69457
chr3.3	mRNA	92586766	92589107	92586766	ID=MS.gene69457.t1;Parent=MS.gene69457
chr3.3	exon	92588349	92589107	92588349	ID=MS.gene69457.t1.exon1;Parent=MS.gene69457.t1
chr3.3	CDS	92588349	92589107	92588349	ID=cds.MS.gene69457.t1;Parent=MS.gene69457.t1
chr3.3	exon	92587727	92588079	92587727	ID=MS.gene69457.t1.exon2;Parent=MS.gene69457.t1
chr3.3	CDS	92587727	92588079	92587727	ID=cds.MS.gene69457.t1;Parent=MS.gene69457.t1
chr3.3	exon	92587499	92587559	92587499	ID=MS.gene69457.t1.exon3;Parent=MS.gene69457.t1
chr3.3	CDS	92587499	92587559	92587499	ID=cds.MS.gene69457.t1;Parent=MS.gene69457.t1
chr3.3	exon	92586766	92587371	92586766	ID=MS.gene69457.t1.exon4;Parent=MS.gene69457.t1
chr3.3	CDS	92586766	92587371	92586766	ID=cds.MS.gene69457.t1;Parent=MS.gene69457.t1

Gene Sequence

>MS.gene69457

ATGTATCCCAACCAAGCATTCTCTTCAGGGTCCTATATGGATATGTTCACCTCGAGTCCTTTGTTACCTCACAATTACTACAACGAATCTGTAGCAGAACAAAATGAAACCAAGTTTAACACACCTATAGGCGACACAGTGACTATGCAGTCCATTGATGAGCATTCCAATGCTTACAGCTCTCATGTAGATGAGCAAAATATACAATGCCAAGAGTTATCTCTTAGTCTCGGGACACTACTGCCTTCTAATGCATCTGTCCCTCCATTTCAATACCAGTATAATGACACCGGTTTCGTATCGCTGATGAATTCTTGTCGTCTTCCAAAGGGAACTACTATATCTAACGAAGATGAATTGAAAAGTGCCGAATGCATGGAAAGCATGTCTTCCGGAGGATTTCATGACATTACCAAAAGGGAGTGTTTTCCCAACCCTCACTCCTCAGATCACTGCCTGCAGGATTCACAAGGTTTTTCCAACATTTTCCTAAACTCTCAATATCTTAAGGCTACACAGGAGTTACTTGATGAGATAGTTAATGTCCGAAAGCAACATGGAATGGAAAAGCAAGAAAAAATCCGCATCATTGGATTGGATAATCCCAAAGATAGTGATGGAAAATCTACTAGTCAGTCTATGCAAATAACTTCGGGCGGACCTAATGATTCTAATTCCAATCCTTCTTGTGAGATATCCTCAGCCAAAAGACAGAATTTGTTGGATAAGAAGACAAAGCTTTTGTCCATGTTGGATGAGGTAACCATATTATTTAGCATTGCATCCTTCCTTTTATGGATTTAATTTGTATGCACTAACAGACTAACAGTGCAAAAACTTTATCATAAGGTTCTATCATCGAAAAAGTTTGACTATTATCATATCTAACTTTTATTGGTTAATAGTGTAAAATAATTTTATACCGATAGTGTGTGACAATTATTCTCTTCTTTTATTCCATGGTTATTATGACAGCGGTGGTTTGGCTGATTGTCGAATCTGTAATCCTTTCTTTGTACTGGTTGTAGGTAGGCAAAAGATACAGACAGTACTGCCATCGAATGCAAATTGTGGTGTCATCTTTGGACATGGTTGCTGGGGGTGGAGCAGCAGAGCCATATACTACACTTGCATTGCGAACAGTTTCGCGTCAGTTTCGCTGCTTGCGCGATGTTATCAGCAACCAAGTTCAAGTGATTCAAAGGAACCTTGGGGAACAAGAAGGAATACCTCGTCTCCGGTACGTGGACCAACAGCTTAGGCAACAAAAGGCACTTCAGCATCTTGGTGTTATGCGGCAAGCATGGAGACCTCAGAGAGGACTTCCCGAAAACTCTGTTTCAATACTTCGTGCTTGGCTATTTGAACATTTTCTTAATCCGTATGTGTTACTTTATAATACCCTCTAAATTCTAATCCTTCACTCAATTTTATATTTTCAATTAGTTGCAATGGTTTCATATTATGCTACTTTCATAATATTTTCTATCTATGTGTATTTTAATCAAATTCTTTTTCAACTTTCATTTCATAATTGGTTGATACCAGTTACCCCAAGGATTCAGAGAAAATAATGCTAGCTAGGCAAACTGGTTTGACAAGGAATCAGGTACAGTTATAATTAATCAAATAATTTTTTATGTGCAACATTATTTTCATTAAACTTGTTGCATTGCATAATCAGGTACAGTTACCAATTGTGGTGTCATCTTTTAATTTATATGGTATGGTATCAGGTGGCAAATTGGTTCATTAATGCACGTGTGCGTCTTTGGAAACCAATGGTTGAGGAAATATACAAAGAAGAGTTTGGTGATTCTGAAATGAACTGCAATTTTTCATCTGAAAATACACTCCAAGGTAAAAGAGATTATGGTCAAGAGATTAATAGTAATAAATTGGAAGAAGAGTCACATGACAATGTACAAATTACTTGTGATCATAGTGTACAAGCCTCTTCCACTAGACAACATGTAGAAAAAAATGTGATAGATTGTGGAAATGGAAAATTGCATGGCAACCAAAGGCTCAGCATAAAAAATGGCTTTTATTCACAAATAGATTCTGATTCTGCCACATATGATTTAACAGAGTTGGGTAACTTTACAACTGTGGATGGTGGTGGCCATCACAATGTCTCTCTTGCATTGGAGTTGAGAAACTGTGAAAGCGATGGATTAGCCACATCTGATGATGCCATTCATAAAAGACATAATAATAATAATCAGACATTGGTTTCTTCTTCACAGAGTACTGATTTACTAGACTATCATTTCACAGATTCAGGAAAGCAACAACACATGTTTGGCAATACTCATCTGTTGCATGAATTTGTCGTATGA

Protein sequence

>MS.gene69457.t1

MYPNQAFSSGSYMDMFTSSPLLPHNYYNESVAEQNETKFNTPIGDTVTMQSIDEHSNAYSSHVDEQNIQCQELSLSLGTLLPSNASVPPFQYQYNDTGFVSLMNSCRLPKGTTISNEDELKSAECMESMSSGGFHDITKRECFPNPHSSDHCLQDSQGFSNIFLNSQYLKATQELLDEIVNVRKQHGMEKQEKIRIIGLDNPKDSDGKSTSQSMQITSGGPNDSNSNPSCEISSAKRQNLLDKKTKLLSMLDEVGKRYRQYCHRMQIVVSSLDMVAGGGAAEPYTTLALRTVSRQFRCLRDVISNQVQVIQRNLGEQEGIPRLRYVDQQLRQQKALQHLGVMRQAWRPQRGLPENSVSILRAWLFEHFLNPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFGDSEMNCNFSSENTLQGKRDYGQEINSNKLEEESHDNVQITCDHSVQASSTRQHVEKNVIDCGNGKLHGNQRLSIKNGFYSQIDSDSATYDLTELGNFTTVDGGGHHNVSLALELRNCESDGLATSDDAIHKRHNNNNQTLVSSSQSTDLLDYHFTDSGKQQHMFGNTHLLHEFVV