Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69458.t1 | XP_013462164.1 | 96.9 | 448 | 9 | 2 | 1 | 448 | 1 | 443 | 4.20E-228 | 800.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69458.t1 | Q1PFD1 | 59.6 | 265 | 98 | 5 | 173 | 431 | 19 | 280 | 3.0e-81 | 303.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69458.t1 | A0A072V2D2 | 96.9 | 448 | 9 | 2 | 1 | 448 | 1 | 443 | 3.0e-228 | 800.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene69458.t1 | TF | HB-BELL |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69458.t1 | MTR_3g112290 | 96.875 | 448 | 9 | 3 | 1 | 448 | 1 | 443 | 0.0 | 887 |
| MS.gene69458.t1 | MTR_1g023050 | 50.903 | 277 | 105 | 8 | 173 | 432 | 173 | 435 | 1.90e-77 | 253 |
| MS.gene69458.t1 | MTR_3g112300 | 45.296 | 287 | 123 | 6 | 163 | 432 | 155 | 424 | 1.42e-70 | 232 |
| MS.gene69458.t1 | MTR_3g112300 | 44.558 | 294 | 129 | 6 | 163 | 439 | 155 | 431 | 5.56e-70 | 233 |
| MS.gene69458.t1 | MTR_4g051532 | 45.936 | 283 | 135 | 6 | 170 | 442 | 217 | 491 | 2.05e-66 | 226 |
| MS.gene69458.t1 | MTR_7g106320 | 46.154 | 286 | 121 | 6 | 168 | 432 | 169 | 442 | 9.17e-65 | 220 |
| MS.gene69458.t1 | MTR_5g018860 | 42.667 | 300 | 151 | 9 | 136 | 427 | 312 | 598 | 1.39e-64 | 221 |
| MS.gene69458.t1 | MTR_1g057790 | 45.418 | 251 | 129 | 4 | 169 | 414 | 160 | 407 | 2.74e-64 | 219 |
| MS.gene69458.t1 | MTR_8g078480 | 43.956 | 273 | 136 | 6 | 170 | 431 | 388 | 654 | 1.05e-62 | 218 |
| MS.gene69458.t1 | MTR_4g019450 | 40.959 | 271 | 129 | 5 | 167 | 431 | 193 | 438 | 1.42e-59 | 205 |
| MS.gene69458.t1 | MTR_7g065050 | 41.573 | 267 | 137 | 4 | 167 | 431 | 134 | 383 | 1.21e-57 | 198 |
| MS.gene69458.t1 | MTR_8g098815 | 54.098 | 183 | 74 | 5 | 239 | 416 | 255 | 432 | 6.22e-57 | 198 |
| MS.gene69458.t1 | MTR_2g095050 | 40.132 | 304 | 139 | 9 | 159 | 432 | 230 | 520 | 9.03e-56 | 195 |
| MS.gene69458.t1 | MTR_3g112300 | 41.569 | 255 | 115 | 6 | 163 | 400 | 155 | 392 | 3.64e-50 | 175 |
| MS.gene69458.t1 | MTR_1g016490 | 36.466 | 266 | 147 | 7 | 167 | 422 | 240 | 493 | 7.30e-40 | 150 |
| MS.gene69458.t1 | MTR_3g112300 | 38.462 | 234 | 110 | 6 | 163 | 379 | 155 | 371 | 1.14e-37 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69458.t1 | AT1G75430 | 60.377 | 265 | 96 | 6 | 173 | 431 | 19 | 280 | 9.77e-106 | 315 |
| MS.gene69458.t1 | AT1G75410 | 49.265 | 272 | 126 | 4 | 162 | 429 | 159 | 422 | 1.58e-77 | 251 |
| MS.gene69458.t1 | AT1G75410 | 49.265 | 272 | 126 | 4 | 162 | 429 | 159 | 422 | 1.58e-77 | 251 |
| MS.gene69458.t1 | AT2G16400 | 47.059 | 289 | 129 | 7 | 148 | 433 | 98 | 365 | 1.26e-76 | 247 |
| MS.gene69458.t1 | AT1G19700 | 49.123 | 285 | 110 | 7 | 164 | 429 | 159 | 427 | 3.03e-76 | 248 |
| MS.gene69458.t1 | AT1G19700 | 49.123 | 285 | 110 | 7 | 164 | 429 | 159 | 427 | 3.03e-76 | 248 |
| MS.gene69458.t1 | AT1G19700 | 49.123 | 285 | 110 | 7 | 164 | 429 | 159 | 427 | 3.03e-76 | 248 |
| MS.gene69458.t1 | AT1G19700 | 49.123 | 285 | 110 | 7 | 164 | 429 | 159 | 427 | 3.03e-76 | 248 |
| MS.gene69458.t1 | AT1G19700 | 49.123 | 285 | 110 | 7 | 164 | 429 | 159 | 427 | 3.03e-76 | 248 |
| MS.gene69458.t1 | AT4G34610 | 48.175 | 274 | 119 | 7 | 170 | 437 | 140 | 396 | 3.39e-70 | 232 |
| MS.gene69458.t1 | AT4G34610 | 48.175 | 274 | 119 | 7 | 170 | 437 | 140 | 396 | 3.39e-70 | 232 |
| MS.gene69458.t1 | AT4G34610 | 48.175 | 274 | 119 | 7 | 170 | 437 | 140 | 396 | 3.39e-70 | 232 |
| MS.gene69458.t1 | AT4G34610 | 48.175 | 274 | 119 | 7 | 170 | 437 | 140 | 396 | 3.39e-70 | 232 |
| MS.gene69458.t1 | AT1G75430 | 54.460 | 213 | 88 | 6 | 173 | 379 | 19 | 228 | 3.18e-67 | 216 |
| MS.gene69458.t1 | AT4G36870 | 45.896 | 268 | 118 | 10 | 170 | 422 | 312 | 567 | 5.08e-61 | 211 |
| MS.gene69458.t1 | AT4G36870 | 45.896 | 268 | 118 | 10 | 170 | 422 | 312 | 567 | 5.08e-61 | 211 |
| MS.gene69458.t1 | AT2G35940 | 41.577 | 279 | 129 | 6 | 163 | 414 | 175 | 446 | 1.05e-57 | 201 |
| MS.gene69458.t1 | AT2G35940 | 41.577 | 279 | 129 | 6 | 163 | 414 | 175 | 446 | 1.05e-57 | 201 |
| MS.gene69458.t1 | AT2G35940 | 41.577 | 279 | 129 | 6 | 163 | 414 | 175 | 446 | 1.05e-57 | 201 |
| MS.gene69458.t1 | AT2G27220 | 42.972 | 249 | 109 | 4 | 176 | 423 | 82 | 298 | 4.58e-57 | 194 |
| MS.gene69458.t1 | AT2G27220 | 42.972 | 249 | 109 | 4 | 176 | 423 | 82 | 298 | 4.58e-57 | 194 |
| MS.gene69458.t1 | AT2G23760 | 44.238 | 269 | 120 | 8 | 170 | 421 | 237 | 492 | 6.06e-57 | 199 |
| MS.gene69458.t1 | AT2G23760 | 44.238 | 269 | 120 | 8 | 170 | 421 | 237 | 492 | 6.06e-57 | 199 |
| MS.gene69458.t1 | AT2G23760 | 44.238 | 269 | 120 | 8 | 170 | 421 | 237 | 492 | 6.06e-57 | 199 |
| MS.gene69458.t1 | AT5G02030 | 37.377 | 305 | 174 | 3 | 125 | 423 | 125 | 418 | 5.33e-56 | 195 |
| MS.gene69458.t1 | AT1G75410 | 44.444 | 243 | 123 | 4 | 162 | 400 | 159 | 393 | 2.50e-55 | 189 |
| MS.gene69458.t1 | AT2G27220 | 42.205 | 263 | 109 | 8 | 176 | 423 | 82 | 316 | 1.13e-54 | 189 |
| MS.gene69458.t1 | AT2G27990 | 40.769 | 260 | 127 | 4 | 167 | 423 | 259 | 494 | 1.87e-53 | 188 |
| MS.gene69458.t1 | AT5G41410 | 40.702 | 285 | 141 | 5 | 171 | 433 | 194 | 472 | 9.71e-52 | 184 |
| MS.gene69458.t1 | AT2G23760 | 37.072 | 321 | 120 | 9 | 170 | 421 | 237 | 544 | 2.25e-47 | 173 |
| MS.gene69458.t1 | AT4G36870 | 42.510 | 247 | 115 | 10 | 170 | 401 | 312 | 546 | 5.76e-45 | 164 |
| MS.gene69458.t1 | AT4G36870 | 42.041 | 245 | 115 | 10 | 170 | 399 | 312 | 544 | 1.11e-43 | 161 |
| MS.gene69458.t1 | AT4G32980 | 36.071 | 280 | 149 | 6 | 152 | 422 | 183 | 441 | 6.27e-40 | 149 |
| MS.gene69458.t1 | AT4G32980 | 36.071 | 280 | 149 | 6 | 152 | 422 | 183 | 441 | 6.27e-40 | 149 |
| MS.gene69458.t1 | AT2G27990 | 34.259 | 216 | 115 | 4 | 167 | 379 | 259 | 450 | 1.17e-27 | 115 |
Find 79 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGATTCATGGACATTTAT+TGG | 0.202908 | 3.3:-92580360 | MS.gene69458:CDS |
| GATCATAAGACCTTGATTTA+AGG | 0.203423 | 3.3:+92580754 | None:intergenic |
| CGTTCTACTTCTACTTCTTA+TGG | 0.209074 | 3.3:-92580569 | MS.gene69458:CDS |
| TGAGAAAAGAAAACTGTTTC+AGG | 0.210768 | 3.3:-92579501 | MS.gene69458:CDS |
| AGCATTTATTTGGGACATTA+TGG | 0.234641 | 3.3:+92579523 | None:intergenic |
| AGAATTGCTACAGATGTTTC+AGG | 0.303192 | 3.3:+92579341 | None:intergenic |
| CAAGGTCTATCCCTTTCTTT+AGG | 0.320317 | 3.3:-92580812 | MS.gene69458:CDS |
| ATACTACTTCTTCCATTTGA+TGG | 0.326054 | 3.3:+92579642 | None:intergenic |
| TTGTACATTTCTTCTATCAT+TGG | 0.327367 | 3.3:+92578753 | None:intergenic |
| TGCAAAGCTCATTTCATTGT+TGG | 0.330686 | 3.3:-92580309 | MS.gene69458:CDS |
| CACCACCTAGTAGTAGTTCT+TGG | 0.332157 | 3.3:+92580993 | None:intergenic |
| TTCAAAACCAACGACAAGTT+TGG | 0.336930 | 3.3:-92579382 | MS.gene69458:CDS |
| GAAGTGACTGTACTGGTTTA+AGG | 0.338310 | 3.3:+92580507 | None:intergenic |
| TTACACTGCTTTGGCACTTC+AGG | 0.345280 | 3.3:-92579579 | MS.gene69458:CDS |
| AGATGTCACTGTGGAGGATT+AGG | 0.348390 | 3.3:-92578667 | None:intergenic |
| AGCTGGCGGGTTGGAGTCTT+CGG | 0.349210 | 3.3:+92578710 | None:intergenic |
| ATTAACTTCTCAGAGTCATT+AGG | 0.369658 | 3.3:+92579185 | None:intergenic |
| GAAATGTACAAAGAAGAGTT+TGG | 0.376842 | 3.3:-92578741 | MS.gene69458:CDS |
| GTTTCAGGTAACCCTCTAAT+AGG | 0.383713 | 3.3:+92579356 | None:intergenic |
| CTTGAAGATCTTGTTGATGT+TGG | 0.386052 | 3.3:-92580485 | MS.gene69458:CDS |
| TTAATCCTGGCTTCCCAAAC+AGG | 0.402326 | 3.3:-92579167 | MS.gene69458:CDS |
| GAGTCACACAAGACATTTGA+TGG | 0.404453 | 3.3:-92580876 | MS.gene69458:CDS |
| TGTTGGTTCAGGTGTCAAAT+TGG | 0.407480 | 3.3:-92578806 | MS.gene69458:intron |
| TTTGAAATGATAGCAGGTTT+GGG | 0.408450 | 3.3:-92579614 | MS.gene69458:CDS |
| TGCAAAGTGTTACACTGCTT+TGG | 0.409703 | 3.3:-92579588 | MS.gene69458:CDS |
| AAAGCAGAGTTGAGGATTCA+TGG | 0.417721 | 3.3:-92580371 | MS.gene69458:CDS |
| TCTTATGGAAGTGAGAGTTT+TGG | 0.428359 | 3.3:-92580554 | MS.gene69458:CDS |
| TTGTTTCATGGGAGTAGAAC+AGG | 0.428923 | 3.3:-92580419 | MS.gene69458:CDS |
| CTGTAGCAATTCTTCGTGCT+TGG | 0.430609 | 3.3:-92579331 | MS.gene69458:CDS |
| TTCAATGGTGGAAATGGAGG+TGG | 0.430738 | 3.3:-92580644 | MS.gene69458:CDS |
| TATGCTGAGAAGTTGTTTCA+TGG | 0.434153 | 3.3:-92580431 | MS.gene69458:CDS |
| GAATCCTCAACTCTGCTTTG+AGG | 0.436275 | 3.3:+92580375 | None:intergenic |
| TGACCAGGCATGAAGTAACT+TGG | 0.451078 | 3.3:+92580728 | None:intergenic |
| CAAGTTTGGAGACCTATTAG+AGG | 0.455849 | 3.3:-92579368 | MS.gene69458:CDS |
| GGGATAGACCTTGTTGTGTC+TGG | 0.465614 | 3.3:+92580822 | None:intergenic |
| TTAAACCTGTTTGGGAAGCC+AGG | 0.480873 | 3.3:+92579162 | None:intergenic |
| CTTGACATAAAATTGTTAGC+TGG | 0.489551 | 3.3:+92578693 | None:intergenic |
| TGACTCTGAGAAGTTAATCC+TGG | 0.499019 | 3.3:-92579180 | MS.gene69458:CDS |
| TTTGAATGACACCAAGTTGT+TGG | 0.503416 | 3.3:+92579399 | None:intergenic |
| GCTCATTTCATTGTTGGATG+AGG | 0.504055 | 3.3:-92580303 | MS.gene69458:intron |
| CTTGTTAGATTCTCCACCAC+AGG | 0.504734 | 3.3:+92580677 | None:intergenic |
| TGAGAAGTACTACCATCAAA+TGG | 0.506912 | 3.3:-92579654 | MS.gene69458:CDS |
| TCCACCACAGGTTGATTACA+AGG | 0.508130 | 3.3:+92580689 | None:intergenic |
| GAAGATCTTGTTGATGTTGG+TGG | 0.515827 | 3.3:-92580482 | MS.gene69458:CDS |
| AACCCAAGTTACTTCATGCC+TGG | 0.516099 | 3.3:-92580731 | MS.gene69458:CDS |
| TTAATGCAAGGGTACGGCTA+TGG | 0.523142 | 3.3:-92578779 | MS.gene69458:CDS |
| CAAATTGGTTCATTAATGCA+AGG | 0.528439 | 3.3:-92578791 | MS.gene69458:CDS |
| CATGTGAGAGCCTAAAGAAA+GGG | 0.530908 | 3.3:+92580802 | None:intergenic |
| ATGCTGAGAAGTTGTTTCAT+GGG | 0.532525 | 3.3:-92580430 | MS.gene69458:CDS |
| TGGCACTTCAGGCAATGTCT+AGG | 0.533896 | 3.3:-92579568 | MS.gene69458:CDS |
| TCTTCAAGAAGTGACTGTAC+TGG | 0.534996 | 3.3:+92580500 | None:intergenic |
| ACATAAAATTGTTAGCTGGC+GGG | 0.535342 | 3.3:+92578697 | None:intergenic |
| AGAAACCGTTCCTTAAATCA+AGG | 0.535526 | 3.3:-92580764 | MS.gene69458:CDS |
| TAGGTCTCCAAACTTGTCGT+TGG | 0.537318 | 3.3:+92579375 | None:intergenic |
| GATGTACCTAAAATTAATAG+TGG | 0.538946 | 3.3:-92579479 | MS.gene69458:CDS |
| GCATGTGAGAGCCTAAAGAA+AGG | 0.546878 | 3.3:+92580801 | None:intergenic |
| TAAGACCTTGATTTAAGGAA+CGG | 0.549373 | 3.3:+92580759 | None:intergenic |
| AGACATTTGATGGATCTACT+TGG | 0.551807 | 3.3:-92580866 | MS.gene69458:CDS |
| AAAATTGTTAGCTGGCGGGT+TGG | 0.557706 | 3.3:+92578701 | None:intergenic |
| AGAATGTCTCTCCAACAACT+TGG | 0.557966 | 3.3:-92579410 | MS.gene69458:CDS |
| GACCAGGCATGAAGTAACTT+GGG | 0.566873 | 3.3:+92580729 | None:intergenic |
| GAGAACCAAGAACTACTACT+AGG | 0.567546 | 3.3:-92580998 | MS.gene69458:CDS |
| GGTTCATTAATGCAAGGGTA+CGG | 0.572871 | 3.3:-92578785 | MS.gene69458:CDS |
| AAATTGGTTCATTAATGCAA+GGG | 0.576729 | 3.3:-92578790 | MS.gene69458:CDS |
| GACATAAAATTGTTAGCTGG+CGG | 0.577181 | 3.3:+92578696 | None:intergenic |
| AAGTTTGGAGACCTATTAGA+GGG | 0.581283 | 3.3:-92579367 | MS.gene69458:CDS |
| TCACGTGTCTGATCTTGACC+AGG | 0.591778 | 3.3:+92580713 | None:intergenic |
| CAACTCTGCTTTGAGGTCAG+AGG | 0.594657 | 3.3:+92580382 | None:intergenic |
| CATAAGAAGTAGAAGTAGAA+CGG | 0.599560 | 3.3:+92580570 | None:intergenic |
| AATGCATATCATGAATCACT+TGG | 0.609154 | 3.3:-92580941 | MS.gene69458:CDS |
| AACAATATTGGACTAGCACA+AGG | 0.612707 | 3.3:-92580908 | MS.gene69458:CDS |
| GCCTTGTAATCAACCTGTGG+TGG | 0.623528 | 3.3:-92580690 | MS.gene69458:CDS |
| AATAATCACCAGACACAACA+AGG | 0.630483 | 3.3:-92580830 | MS.gene69458:CDS |
| AAGGGAAGATGTCACTGTGG+AGG | 0.641601 | 3.3:-92578673 | MS.gene69458:CDS |
| CAAGAACTACTACTAGGTGG+TGG | 0.646214 | 3.3:-92580992 | MS.gene69458:CDS |
| CTGACCTCAAAGCAGAGTTG+AGG | 0.668038 | 3.3:-92580379 | MS.gene69458:CDS |
| AACCAAGAACTACTACTAGG+TGG | 0.711092 | 3.3:-92580995 | MS.gene69458:CDS |
| TGAGCCTTGTAATCAACCTG+TGG | 0.732645 | 3.3:-92580693 | MS.gene69458:CDS |
| GTCAAGGGAAGATGTCACTG+TGG | 0.757361 | 3.3:-92578676 | MS.gene69458:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTAATTCATTTTTTTTC+CGG | - | chr3.3:92580840-92580859 | MS.gene69458:CDS | 15.0% |
| !!! | AATCAAAAATCAAATTGTTT+TGG | - | chr3.3:92579568-92579587 | MS.gene69458:CDS | 15.0% |
| !! | AAAAAGAAAAACAAATTGAG+AGG | - | chr3.3:92579786-92579805 | MS.gene69458:intron | 20.0% |
| !! | AGCTAAATTAACATATCATT+AGG | + | chr3.3:92580613-92580632 | None:intergenic | 20.0% |
| !! | ATTAATGAAATGCTAATTTG+AGG | - | chr3.3:92580476-92580495 | MS.gene69458:CDS | 20.0% |
| !! | TTAACATATCATTAGGAAAA+AGG | + | chr3.3:92580606-92580625 | None:intergenic | 20.0% |
| !!! | ACAAGTGATTATTTTTTCAA+TGG | - | chr3.3:92579043-92579062 | MS.gene69458:intron | 20.0% |
| !!! | AGAATTTTGATATAAGCTTA+CGG | + | chr3.3:92580418-92580437 | None:intergenic | 20.0% |
| !!! | GTGAATTTCATATACTTTTA+AGG | - | chr3.3:92580773-92580792 | MS.gene69458:CDS | 20.0% |
| !!! | TAAAAGTATATGAAATTCAC+CGG | + | chr3.3:92580773-92580792 | None:intergenic | 20.0% |
| !!! | TCTTTCACTTTATCTTTTAT+GGG | - | chr3.3:92580699-92580718 | MS.gene69458:CDS | 20.0% |
| !!! | TTCTTTCACTTTATCTTTTA+TGG | - | chr3.3:92580698-92580717 | MS.gene69458:CDS | 20.0% |
| ! | AAGTTCATTAGAATAAGTGT+AGG | - | chr3.3:92579830-92579849 | MS.gene69458:intron | 25.0% |
| ! | AGCTATCTTAGAGAATTTAT+AGG | - | chr3.3:92579647-92579666 | MS.gene69458:CDS | 25.0% |
| ! | ATATAAGTGTTAGATATGCT+TGG | + | chr3.3:92579950-92579969 | None:intergenic | 25.0% |
| ! | ATATCATTAGGAAAAAGGAA+AGG | + | chr3.3:92580601-92580620 | None:intergenic | 25.0% |
| ! | GATGTACCTAAAATTAATAG+TGG | - | chr3.3:92580223-92580242 | MS.gene69458:intron | 25.0% |
| ! | TAGCATTTCATTAATAAGAC+AGG | + | chr3.3:92580471-92580490 | None:intergenic | 25.0% |
| ! | TATAAGTGTTAGATATGCTT+GGG | + | chr3.3:92579949-92579968 | None:intergenic | 25.0% |
| ! | TATCATTAGGAAAAAGGAAA+GGG | + | chr3.3:92580600-92580619 | None:intergenic | 25.0% |
| ! | TTGTACATTTCTTCTATCAT+TGG | + | chr3.3:92580952-92580971 | None:intergenic | 25.0% |
| !! | AAAGTTGGTTAGTAATTAGT+TGG | + | chr3.3:92579906-92579925 | None:intergenic | 25.0% |
| !! | AAATTGGTTCATTAATGCAA+GGG | - | chr3.3:92580912-92580931 | MS.gene69458:CDS | 25.0% |
| !! | AAGTTGGTTAGTAATTAGTT+GGG | + | chr3.3:92579905-92579924 | None:intergenic | 25.0% |
| !! | AGCTAACAATTTTATGTCAA+GGG | - | chr3.3:92581011-92581030 | MS.gene69458:CDS | 25.0% |
| !! | AGGAAAATGTCAAATAGTTT+TGG | - | chr3.3:92579667-92579686 | MS.gene69458:CDS | 25.0% |
| !! | GACAATCCACTATTAATTTT+AGG | + | chr3.3:92580232-92580251 | None:intergenic | 25.0% |
| !! | GGAACATTTTCTAACAATAT+TGG | - | chr3.3:92578782-92578801 | MS.gene69458:CDS | 25.0% |
| !! | TCTTTTCTCAGCATTTATTT+GGG | + | chr3.3:92580191-92580210 | None:intergenic | 25.0% |
| !! | TTCTTTTCTCAGCATTTATT+TGG | + | chr3.3:92580192-92580211 | None:intergenic | 25.0% |
| !!! | AGTGATTATTTTTTCAATGG+TGG | - | chr3.3:92579046-92579065 | MS.gene69458:intron | 25.0% |
| !!! | ATTTGTTGTGCTTAATTTTC+AGG | - | chr3.3:92580012-92580031 | MS.gene69458:intron | 25.0% |
| !!! | GTTCTCAAATTGATTTTGAT+GGG | + | chr3.3:92578690-92578709 | None:intergenic | 25.0% |
| !!! | TATTTTTTCAATGGTGGAAA+TGG | - | chr3.3:92579052-92579071 | MS.gene69458:intron | 25.0% |
| !!! | TCATATTTTGAAATGATAGC+AGG | - | chr3.3:92580082-92580101 | MS.gene69458:intron | 25.0% |
| AATAATAAGCACTTGTGAGA+CGG | + | chr3.3:92579744-92579763 | None:intergenic | 30.0% | |
| AATGCATATCATGAATCACT+TGG | - | chr3.3:92578761-92578780 | MS.gene69458:CDS | 30.0% | |
| ATACTACTTCTTCCATTTGA+TGG | + | chr3.3:92580063-92580082 | None:intergenic | 30.0% | |
| ATCACCATCATAAATAACTC+CGG | + | chr3.3:92580862-92580881 | None:intergenic | 30.0% | |
| ATCATTAGGAAAAAGGAAAG+GGG | + | chr3.3:92580599-92580618 | None:intergenic | 30.0% | |
| ATTAACTTCTCAGAGTCATT+AGG | + | chr3.3:92580520-92580539 | None:intergenic | 30.0% | |
| CATAAGAAGTAGAAGTAGAA+CGG | + | chr3.3:92579135-92579154 | None:intergenic | 30.0% | |
| CTTGACATAAAATTGTTAGC+TGG | + | chr3.3:92581012-92581031 | None:intergenic | 30.0% | |
| GAAATGTACAAAGAAGAGTT+TGG | - | chr3.3:92580961-92580980 | MS.gene69458:CDS | 30.0% | |
| GATCATAAGACCTTGATTTA+AGG | + | chr3.3:92578951-92578970 | None:intergenic | 30.0% | |
| GATGTTAATGTATTGAGTGT+TGG | - | chr3.3:92580879-92580898 | MS.gene69458:CDS | 30.0% | |
| GTGCTTATTATTGAGAAACA+TGG | - | chr3.3:92579752-92579771 | MS.gene69458:intron | 30.0% | |
| TAAGACCTTGATTTAAGGAA+CGG | + | chr3.3:92578946-92578965 | None:intergenic | 30.0% | |
| TGAGAAAAGAAAACTGTTTC+AGG | - | chr3.3:92580201-92580220 | MS.gene69458:intron | 30.0% | |
| ! | AGCATTTATTTGGGACATTA+TGG | + | chr3.3:92580182-92580201 | None:intergenic | 30.0% |
| ! | CAAATTGGTTCATTAATGCA+AGG | - | chr3.3:92580911-92580930 | MS.gene69458:CDS | 30.0% |
| ! | CAGCTAACAATTTTATGTCA+AGG | - | chr3.3:92581010-92581029 | MS.gene69458:CDS | 30.0% |
| ! | TCACTTTATCTTTTATGGGT+AGG | - | chr3.3:92580703-92580722 | MS.gene69458:CDS | 30.0% |
| ! | TTTGAAATGATAGCAGGTTT+GGG | - | chr3.3:92580088-92580107 | MS.gene69458:intron | 30.0% |
| ! | TTTTCCGGAGTTATTTATGA+TGG | - | chr3.3:92580855-92580874 | MS.gene69458:CDS | 30.0% |
| ! | TTTTTGGATAAGGGATTACT+TGG | + | chr3.3:92580573-92580592 | None:intergenic | 30.0% |
| !! | AAATTGATTTTGATGGGTCA+TGG | + | chr3.3:92578684-92578703 | None:intergenic | 30.0% |
| !! | ATAAGGGATTACTTGGTTTT+TGG | + | chr3.3:92580566-92580585 | None:intergenic | 30.0% |
| !! | GGTTCTCAAATTGATTTTGA+TGG | + | chr3.3:92578691-92578710 | None:intergenic | 30.0% |
| !! | GTTAAAGGTACTTACAAAGT+TGG | + | chr3.3:92579921-92579940 | None:intergenic | 30.0% |
| !!! | AGAGTTTTGGTTCTGTTATT+GGG | - | chr3.3:92579161-92579180 | MS.gene69458:CDS | 30.0% |
| !!! | GTTTTTGGTTAAACCTGTTT+GGG | + | chr3.3:92580551-92580570 | None:intergenic | 30.0% |
| !!! | TTTTGAAATGATAGCAGGTT+TGG | - | chr3.3:92580087-92580106 | MS.gene69458:intron | 30.0% |
| AAGTTTGGAGACCTATTAGA+GGG | - | chr3.3:92580335-92580354 | MS.gene69458:CDS | 35.0% | |
| AATAATCACCAGACACAACA+AGG | - | chr3.3:92578872-92578891 | MS.gene69458:intron | 35.0% | |
| ACATAAAATTGTTAGCTGGC+GGG | + | chr3.3:92581008-92581027 | None:intergenic | 35.0% | |
| AGAAACCGTTCCTTAAATCA+AGG | - | chr3.3:92578938-92578957 | MS.gene69458:intron | 35.0% | |
| AGAATTGCTACAGATGTTTC+AGG | + | chr3.3:92580364-92580383 | None:intergenic | 35.0% | |
| ATTTCATTGTTGGATGAGGT+TGG | - | chr3.3:92579403-92579422 | MS.gene69458:CDS | 35.0% | |
| CAACAGTCACATACATTAAC+CGG | - | chr3.3:92580751-92580770 | MS.gene69458:CDS | 35.0% | |
| CGTTCTACTTCTACTTCTTA+TGG | - | chr3.3:92579133-92579152 | MS.gene69458:intron | 35.0% | |
| CTTGAAGATCTTGTTGATGT+TGG | - | chr3.3:92579217-92579236 | MS.gene69458:intron | 35.0% | |
| GACATAAAATTGTTAGCTGG+CGG | + | chr3.3:92581009-92581028 | None:intergenic | 35.0% | |
| GAGGATTCATGGACATTTAT+TGG | - | chr3.3:92579342-92579361 | MS.gene69458:CDS | 35.0% | |
| TGCAAAGCTCATTTCATTGT+TGG | - | chr3.3:92579393-92579412 | MS.gene69458:CDS | 35.0% | |
| TTATGGGTAGGAATCAAGTT+AGG | - | chr3.3:92580715-92580734 | MS.gene69458:CDS | 35.0% | |
| TTCAAAACCAACGACAAGTT+TGG | - | chr3.3:92580320-92580339 | MS.gene69458:CDS | 35.0% | |
| TTTGAATGACACCAAGTTGT+TGG | + | chr3.3:92580306-92580325 | None:intergenic | 35.0% | |
| ! | AAAAGGAAAGGGGTAGTTTT+TGG | + | chr3.3:92580589-92580608 | None:intergenic | 35.0% |
| ! | ACACTGCAAACATTAACTTG+AGG | - | chr3.3:92580806-92580825 | MS.gene69458:CDS | 35.0% |
| ! | AGACATTTGATGGATCTACT+TGG | - | chr3.3:92578836-92578855 | MS.gene69458:intron | 35.0% |
| ! | ATGCTGAGAAGTTGTTTCAT+GGG | - | chr3.3:92579272-92579291 | MS.gene69458:intron | 35.0% |
| ! | CACTGCAAACATTAACTTGA+GGG | - | chr3.3:92580807-92580826 | MS.gene69458:CDS | 35.0% |
| ! | TATGCTGAGAAGTTGTTTCA+TGG | - | chr3.3:92579271-92579290 | MS.gene69458:intron | 35.0% |
| ! | TCTTATGGAAGTGAGAGTTT+TGG | - | chr3.3:92579148-92579167 | MS.gene69458:intron | 35.0% |
| !! | AAAGGGGTAGTTTTTGGATA+AGG | + | chr3.3:92580583-92580602 | None:intergenic | 35.0% |
| !! | AACAATATTGGACTAGCACA+AGG | - | chr3.3:92578794-92578813 | MS.gene69458:CDS | 35.0% |
| !! | AAGGGGTAGTTTTTGGATAA+GGG | + | chr3.3:92580582-92580601 | None:intergenic | 35.0% |
| !! | AATGTATTGAGTGTTGGTTC+AGG | - | chr3.3:92580885-92580904 | MS.gene69458:CDS | 35.0% |
| !! | TATGCTTGGGAGTTTGTTAA+AGG | + | chr3.3:92579936-92579955 | None:intergenic | 35.0% |
| !! | TGAGAAGTACTACCATCAAA+TGG | - | chr3.3:92580048-92580067 | MS.gene69458:intron | 35.0% |
| !! | TTTTTCAATGGTGGAAATGG+AGG | - | chr3.3:92579055-92579074 | MS.gene69458:intron | 35.0% |
| !!! | GAGAGTTTTGGTTCTGTTAT+TGG | - | chr3.3:92579160-92579179 | MS.gene69458:CDS | 35.0% |
| !!! | GGTTTTTGGTTAAACCTGTT+TGG | + | chr3.3:92580552-92580571 | None:intergenic | 35.0% |
| !!! | GTGCTTAATTTTCAGGTTGA+GGG | - | chr3.3:92580019-92580038 | MS.gene69458:intron | 35.0% |
| !!! | TGTGCTTAATTTTCAGGTTG+AGG | - | chr3.3:92580018-92580037 | MS.gene69458:intron | 35.0% |
| AAAGCAGAGTTGAGGATTCA+TGG | - | chr3.3:92579331-92579350 | MS.gene69458:CDS | 40.0% | |
| AACCAAGAACTACTACTAGG+TGG | - | chr3.3:92578707-92578726 | MS.gene69458:CDS | 40.0% | |
| AGAATGTCTCTCCAACAACT+TGG | - | chr3.3:92580292-92580311 | MS.gene69458:intron | 40.0% | |
| CAAGGTCTATCCCTTTCTTT+AGG | - | chr3.3:92578890-92578909 | MS.gene69458:intron | 40.0% | |
| CAAGTTTGGAGACCTATTAG+AGG | - | chr3.3:92580334-92580353 | MS.gene69458:CDS | 40.0% | |
| CATGTGAGAGCCTAAAGAAA+GGG | + | chr3.3:92578903-92578922 | None:intergenic | 40.0% | |
| GAAGATCTTGTTGATGTTGG+TGG | - | chr3.3:92579220-92579239 | MS.gene69458:intron | 40.0% | |
| GAGAACCAAGAACTACTACT+AGG | - | chr3.3:92578704-92578723 | MS.gene69458:CDS | 40.0% | |
| GAGTCACACAAGACATTTGA+TGG | - | chr3.3:92578826-92578845 | MS.gene69458:intron | 40.0% | |
| GCTCATTTCATTGTTGGATG+AGG | - | chr3.3:92579399-92579418 | MS.gene69458:CDS | 40.0% | |
| GGTTCATTAATGCAAGGGTA+CGG | - | chr3.3:92580917-92580936 | MS.gene69458:CDS | 40.0% | |
| TCTTCAAGAAGTGACTGTAC+TGG | + | chr3.3:92579205-92579224 | None:intergenic | 40.0% | |
| TTGTTTCATGGGAGTAGAAC+AGG | - | chr3.3:92579283-92579302 | MS.gene69458:intron | 40.0% | |
| ! | GTTTCAGGTAACCCTCTAAT+AGG | + | chr3.3:92580349-92580368 | None:intergenic | 40.0% |
| ! | TGACTCTGAGAAGTTAATCC+TGG | - | chr3.3:92580522-92580541 | MS.gene69458:CDS | 40.0% |
| ! | TGCAAAGTGTTACACTGCTT+TGG | - | chr3.3:92580114-92580133 | MS.gene69458:intron | 40.0% |
| !! | GAAGTGACTGTACTGGTTTA+AGG | + | chr3.3:92579198-92579217 | None:intergenic | 40.0% |
| !! | TGTTGGTTCAGGTGTCAAAT+TGG | - | chr3.3:92580896-92580915 | MS.gene69458:CDS | 40.0% |
| AACCCAAGTTACTTCATGCC+TGG | - | chr3.3:92578971-92578990 | MS.gene69458:intron | 45.0% | |
| CAAGAACTACTACTAGGTGG+TGG | - | chr3.3:92578710-92578729 | MS.gene69458:CDS | 45.0% | |
| CACCACCTAGTAGTAGTTCT+TGG | + | chr3.3:92578712-92578731 | None:intergenic | 45.0% | |
| CTGTAGCAATTCTTCGTGCT+TGG | - | chr3.3:92580371-92580390 | MS.gene69458:CDS | 45.0% | |
| CTTGTTAGATTCTCCACCAC+AGG | + | chr3.3:92579028-92579047 | None:intergenic | 45.0% | |
| GAATCCTCAACTCTGCTTTG+AGG | + | chr3.3:92579330-92579349 | None:intergenic | 45.0% | |
| GACCAGGCATGAAGTAACTT+GGG | + | chr3.3:92578976-92578995 | None:intergenic | 45.0% | |
| GCATGTGAGAGCCTAAAGAA+AGG | + | chr3.3:92578904-92578923 | None:intergenic | 45.0% | |
| TAGGTCTCCAAACTTGTCGT+TGG | + | chr3.3:92580330-92580349 | None:intergenic | 45.0% | |
| TGACCAGGCATGAAGTAACT+TGG | + | chr3.3:92578977-92578996 | None:intergenic | 45.0% | |
| TTAAACCTGTTTGGGAAGCC+AGG | + | chr3.3:92580543-92580562 | None:intergenic | 45.0% | |
| TTAATCCTGGCTTCCCAAAC+AGG | - | chr3.3:92580535-92580554 | MS.gene69458:CDS | 45.0% | |
| TTACACTGCTTTGGCACTTC+AGG | - | chr3.3:92580123-92580142 | MS.gene69458:intron | 45.0% | |
| ! | AAAATTGTTAGCTGGCGGGT+TGG | + | chr3.3:92581004-92581023 | None:intergenic | 45.0% |
| ! | AAGCACTTGTGAGACGGATT+AGG | + | chr3.3:92579738-92579757 | None:intergenic | 45.0% |
| ! | TGAGCCTTGTAATCAACCTG+TGG | - | chr3.3:92579009-92579028 | MS.gene69458:intron | 45.0% |
| ! | TTAATGCAAGGGTACGGCTA+TGG | - | chr3.3:92580923-92580942 | MS.gene69458:CDS | 45.0% |
| ! | TTCAATGGTGGAAATGGAGG+TGG | - | chr3.3:92579058-92579077 | MS.gene69458:intron | 45.0% |
| !! | TCCACCACAGGTTGATTACA+AGG | + | chr3.3:92579016-92579035 | None:intergenic | 45.0% |
| AAGGGAAGATGTCACTGTGG+AGG | - | chr3.3:92581029-92581048 | MS.gene69458:CDS | 50.0% | |
| CTGACCTCAAAGCAGAGTTG+AGG | - | chr3.3:92579323-92579342 | MS.gene69458:CDS | 50.0% | |
| GCCTTGTAATCAACCTGTGG+TGG | - | chr3.3:92579012-92579031 | MS.gene69458:intron | 50.0% | |
| GTCAAGGGAAGATGTCACTG+TGG | - | chr3.3:92581026-92581045 | MS.gene69458:CDS | 50.0% | |
| TCACGTGTCTGATCTTGACC+AGG | + | chr3.3:92578992-92579011 | None:intergenic | 50.0% | |
| TGGCACTTCAGGCAATGTCT+AGG | - | chr3.3:92580134-92580153 | MS.gene69458:intron | 50.0% | |
| ! | GGAGGTGGAACTTTTGCTTC+AGG | - | chr3.3:92579073-92579092 | MS.gene69458:intron | 50.0% |
| ! | GGGATAGACCTTGTTGTGTC+TGG | + | chr3.3:92578883-92578902 | None:intergenic | 50.0% |
| !! | CAACTCTGCTTTGAGGTCAG+AGG | + | chr3.3:92579323-92579342 | None:intergenic | 50.0% |
| !! | AGCTGGCGGGTTGGAGTCTT+CGG | + | chr3.3:92580995-92581014 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 92578668 | 92581056 | 92578668 | ID=MS.gene69458 |
| chr3.3 | mRNA | 92578668 | 92581056 | 92578668 | ID=MS.gene69458.t1;Parent=MS.gene69458 |
| chr3.3 | exon | 92580304 | 92581056 | 92580304 | ID=MS.gene69458.t1.exon1;Parent=MS.gene69458.t1 |
| chr3.3 | CDS | 92580304 | 92581056 | 92580304 | ID=cds.MS.gene69458.t1;Parent=MS.gene69458.t1 |
| chr3.3 | exon | 92579308 | 92579690 | 92579308 | ID=MS.gene69458.t1.exon2;Parent=MS.gene69458.t1 |
| chr3.3 | CDS | 92579308 | 92579690 | 92579308 | ID=cds.MS.gene69458.t1;Parent=MS.gene69458.t1 |
| chr3.3 | exon | 92579151 | 92579211 | 92579151 | ID=MS.gene69458.t1.exon3;Parent=MS.gene69458.t1 |
| chr3.3 | CDS | 92579151 | 92579211 | 92579151 | ID=cds.MS.gene69458.t1;Parent=MS.gene69458.t1 |
| chr3.3 | exon | 92578668 | 92578817 | 92578668 | ID=MS.gene69458.t1.exon4;Parent=MS.gene69458.t1 |
| chr3.3 | CDS | 92578668 | 92578817 | 92578668 | ID=cds.MS.gene69458.t1;Parent=MS.gene69458.t1 |
| Gene Sequence |
| Protein sequence |
