Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69488.t1 | KEH33670.1 | 85.8 | 176 | 25 | 0 | 1 | 176 | 176 | 351 | 2.70E-77 | 298.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69488.t1 | A0A072V670 | 85.8 | 176 | 25 | 0 | 1 | 176 | 176 | 351 | 1.9e-77 | 298.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene69488.t1 | TR | mTERF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69488.t1 | MTR_3g450500 | 85.795 | 176 | 25 | 0 | 1 | 176 | 176 | 351 | 4.19e-107 | 311 |
MS.gene69488.t1 | MTR_4g007490 | 74.011 | 177 | 46 | 0 | 1 | 177 | 174 | 350 | 1.11e-91 | 272 |
MS.gene69488.t1 | MTR_2g019810 | 39.766 | 171 | 99 | 3 | 8 | 177 | 172 | 339 | 2.73e-33 | 121 |
MS.gene69488.t1 | MTR_2g019840 | 39.181 | 171 | 100 | 3 | 8 | 177 | 184 | 351 | 5.28e-33 | 121 |
MS.gene69488.t1 | MTR_2g436460 | 37.714 | 175 | 106 | 2 | 4 | 177 | 184 | 356 | 8.76e-32 | 117 |
MS.gene69488.t1 | MTR_2g437040 | 37.059 | 170 | 105 | 1 | 8 | 177 | 183 | 350 | 3.38e-31 | 116 |
MS.gene69488.t1 | MTR_2g437260 | 33.143 | 175 | 117 | 0 | 3 | 177 | 172 | 346 | 1.56e-29 | 112 |
MS.gene69488.t1 | MTR_4g119550 | 33.333 | 171 | 112 | 1 | 7 | 177 | 192 | 360 | 2.64e-29 | 111 |
MS.gene69488.t1 | MTR_2g437240 | 33.728 | 169 | 110 | 1 | 8 | 176 | 211 | 377 | 2.40e-27 | 106 |
MS.gene69488.t1 | MTR_2g437080 | 35.714 | 182 | 102 | 3 | 3 | 177 | 177 | 350 | 2.62e-27 | 105 |
MS.gene69488.t1 | MTR_2g436400 | 34.320 | 169 | 109 | 1 | 8 | 176 | 190 | 356 | 3.59e-27 | 105 |
MS.gene69488.t1 | MTR_2g437100 | 33.140 | 172 | 113 | 1 | 6 | 177 | 206 | 375 | 8.69e-27 | 104 |
MS.gene69488.t1 | MTR_2g436440 | 33.333 | 171 | 112 | 1 | 7 | 177 | 188 | 356 | 7.02e-26 | 102 |
MS.gene69488.t1 | MTR_2g437160 | 33.140 | 172 | 113 | 1 | 6 | 177 | 206 | 375 | 1.59e-25 | 101 |
MS.gene69488.t1 | MTR_2g437020 | 34.104 | 173 | 112 | 2 | 6 | 177 | 180 | 351 | 1.85e-25 | 100 |
MS.gene69488.t1 | MTR_2g438020 | 32.749 | 171 | 113 | 1 | 6 | 176 | 248 | 416 | 2.75e-25 | 101 |
MS.gene69488.t1 | MTR_2g437090 | 35.075 | 134 | 87 | 0 | 44 | 177 | 5 | 138 | 6.00e-25 | 95.1 |
MS.gene69488.t1 | MTR_2g437180 | 31.579 | 171 | 115 | 1 | 6 | 176 | 193 | 361 | 1.41e-24 | 98.6 |
MS.gene69488.t1 | MTR_4g120380 | 30.952 | 168 | 114 | 1 | 8 | 175 | 185 | 350 | 3.08e-24 | 97.4 |
MS.gene69488.t1 | MTR_4g120380 | 30.952 | 168 | 114 | 1 | 8 | 175 | 185 | 350 | 3.93e-24 | 97.8 |
MS.gene69488.t1 | MTR_2g437030 | 34.118 | 170 | 110 | 2 | 8 | 177 | 269 | 436 | 4.54e-24 | 97.8 |
MS.gene69488.t1 | MTR_2g437960 | 30.409 | 171 | 117 | 1 | 6 | 176 | 197 | 365 | 1.41e-23 | 95.9 |
MS.gene69488.t1 | MTR_2g437960 | 30.409 | 171 | 117 | 1 | 6 | 176 | 197 | 365 | 1.48e-23 | 96.3 |
MS.gene69488.t1 | MTR_2g437150 | 31.977 | 172 | 115 | 1 | 6 | 177 | 201 | 370 | 1.60e-23 | 95.9 |
MS.gene69488.t1 | MTR_2g437120 | 32.164 | 171 | 113 | 2 | 7 | 177 | 196 | 363 | 3.46e-23 | 95.1 |
MS.gene69488.t1 | MTR_4g119580 | 33.529 | 170 | 111 | 1 | 8 | 177 | 185 | 352 | 5.83e-23 | 94.0 |
MS.gene69488.t1 | MTR_2g437200 | 32.164 | 171 | 114 | 1 | 6 | 176 | 209 | 377 | 7.82e-23 | 94.0 |
MS.gene69488.t1 | MTR_2g437160 | 30.601 | 183 | 113 | 3 | 9 | 177 | 102 | 284 | 4.82e-22 | 90.9 |
MS.gene69488.t1 | MTR_2g437060 | 34.706 | 170 | 109 | 2 | 8 | 177 | 198 | 365 | 5.27e-22 | 91.7 |
MS.gene69488.t1 | MTR_2g437170 | 32.895 | 152 | 100 | 1 | 6 | 157 | 201 | 350 | 6.56e-22 | 91.7 |
MS.gene69488.t1 | MTR_2g437990 | 29.825 | 171 | 118 | 1 | 7 | 177 | 194 | 362 | 2.63e-20 | 87.0 |
MS.gene69488.t1 | MTR_2g437940 | 30.409 | 171 | 117 | 1 | 7 | 177 | 166 | 334 | 3.55e-20 | 86.3 |
MS.gene69488.t1 | MTR_2g076320 | 29.825 | 171 | 118 | 1 | 7 | 177 | 195 | 363 | 1.18e-19 | 85.1 |
MS.gene69488.t1 | MTR_2g438010 | 30.519 | 154 | 105 | 2 | 6 | 159 | 214 | 365 | 4.55e-19 | 83.6 |
MS.gene69488.t1 | MTR_2g437130 | 30.573 | 157 | 107 | 1 | 3 | 159 | 179 | 333 | 9.76e-17 | 77.0 |
MS.gene69488.t1 | MTR_8g081000 | 26.744 | 172 | 126 | 0 | 6 | 177 | 196 | 367 | 2.09e-16 | 75.9 |
MS.gene69488.t1 | MTR_8g081000 | 26.744 | 172 | 126 | 0 | 6 | 177 | 196 | 367 | 2.13e-16 | 75.9 |
MS.gene69488.t1 | MTR_8g081000 | 26.744 | 172 | 126 | 0 | 6 | 177 | 196 | 367 | 2.18e-16 | 75.9 |
MS.gene69488.t1 | MTR_8g080990 | 29.070 | 172 | 122 | 0 | 6 | 177 | 183 | 354 | 2.94e-15 | 72.8 |
MS.gene69488.t1 | MTR_4g119570 | 27.976 | 168 | 86 | 2 | 8 | 175 | 77 | 209 | 1.04e-13 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69488.t1 | AT5G07900 | 41.618 | 173 | 100 | 1 | 6 | 177 | 210 | 382 | 3.33e-47 | 159 |
MS.gene69488.t1 | AT1G21150 | 38.506 | 174 | 105 | 2 | 2 | 174 | 156 | 328 | 1.18e-32 | 119 |
MS.gene69488.t1 | AT1G21150 | 38.506 | 174 | 105 | 2 | 2 | 174 | 192 | 364 | 2.26e-32 | 119 |
MS.gene69488.t1 | AT1G21150 | 38.506 | 174 | 105 | 2 | 2 | 174 | 256 | 428 | 4.49e-32 | 119 |
MS.gene69488.t1 | AT1G62010 | 31.336 | 217 | 106 | 5 | 2 | 176 | 164 | 379 | 5.36e-24 | 97.4 |
MS.gene69488.t1 | AT1G61970 | 31.604 | 212 | 106 | 5 | 2 | 176 | 186 | 395 | 6.01e-21 | 89.0 |
MS.gene69488.t1 | AT1G61970 | 31.604 | 212 | 106 | 5 | 2 | 176 | 186 | 395 | 6.01e-21 | 89.0 |
MS.gene69488.t1 | AT1G61970 | 31.604 | 212 | 106 | 5 | 2 | 176 | 186 | 395 | 6.01e-21 | 89.0 |
MS.gene69488.t1 | AT1G61970 | 31.604 | 212 | 106 | 5 | 2 | 176 | 186 | 395 | 6.01e-21 | 89.0 |
MS.gene69488.t1 | AT1G61970 | 31.604 | 212 | 106 | 5 | 2 | 176 | 186 | 395 | 6.01e-21 | 89.0 |
MS.gene69488.t1 | AT1G61970 | 31.604 | 212 | 106 | 5 | 2 | 176 | 186 | 395 | 6.01e-21 | 89.0 |
MS.gene69488.t1 | AT1G61970 | 31.604 | 212 | 106 | 5 | 2 | 176 | 186 | 395 | 6.01e-21 | 89.0 |
MS.gene69488.t1 | AT1G61980 | 30.332 | 211 | 110 | 3 | 2 | 176 | 186 | 395 | 5.81e-20 | 86.3 |
MS.gene69488.t1 | AT1G61980 | 30.332 | 211 | 110 | 3 | 2 | 176 | 186 | 395 | 5.81e-20 | 86.3 |
MS.gene69488.t1 | AT1G61980 | 30.332 | 211 | 110 | 3 | 2 | 176 | 186 | 395 | 5.81e-20 | 86.3 |
MS.gene69488.t1 | AT1G62120 | 31.905 | 210 | 104 | 5 | 4 | 176 | 194 | 401 | 1.65e-19 | 85.1 |
MS.gene69488.t1 | AT1G61990 | 26.636 | 214 | 116 | 4 | 3 | 177 | 180 | 391 | 2.84e-16 | 75.9 |
MS.gene69488.t1 | AT1G61990 | 26.636 | 214 | 116 | 4 | 3 | 177 | 180 | 391 | 2.84e-16 | 75.9 |
MS.gene69488.t1 | AT3G46950 | 35.862 | 145 | 85 | 4 | 3 | 142 | 183 | 324 | 4.47e-16 | 75.5 |
MS.gene69488.t1 | AT5G23930 | 28.216 | 241 | 100 | 5 | 8 | 177 | 190 | 428 | 6.09e-16 | 75.1 |
MS.gene69488.t1 | AT1G62150 | 26.316 | 247 | 106 | 8 | 4 | 177 | 196 | 439 | 2.78e-14 | 70.1 |
MS.gene69488.t1 | AT1G61960 | 39.286 | 112 | 65 | 2 | 6 | 116 | 191 | 300 | 9.92e-14 | 68.6 |
MS.gene69488.t1 | AT1G62110 | 32.414 | 145 | 90 | 4 | 3 | 142 | 189 | 330 | 2.81e-13 | 67.4 |
MS.gene69488.t1 | AT1G62085 | 28.324 | 173 | 120 | 3 | 7 | 176 | 264 | 435 | 3.59e-12 | 63.9 |
MS.gene69488.t1 | AT1G62085 | 34.921 | 126 | 78 | 3 | 4 | 128 | 193 | 315 | 4.26e-12 | 63.9 |
MS.gene69488.t1 | AT1G62085 | 28.324 | 173 | 120 | 3 | 7 | 176 | 264 | 435 | 3.59e-12 | 63.9 |
MS.gene69488.t1 | AT1G62085 | 34.921 | 126 | 78 | 3 | 4 | 128 | 193 | 315 | 4.26e-12 | 63.9 |
MS.gene69488.t1 | AT1G62490 | 33.028 | 109 | 72 | 1 | 8 | 116 | 198 | 305 | 8.79e-11 | 59.7 |
Find 32 sgRNAs with CRISPR-Local
Find 44 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATAAGTACCTTTATTATTA+TGG | 0.157841 | 3.1:-31925100 | MS.gene69488:CDS |
TATGAAAACAATGAACTTCT+TGG | 0.276128 | 3.1:-31925262 | MS.gene69488:CDS |
GAACGCTACATTGGGAAAAT+TGG | 0.307287 | 3.1:+31925509 | None:intergenic |
GTCGAGAGATATGTGTCTTT+TGG | 0.315308 | 3.1:-31925331 | MS.gene69488:CDS |
TTTCTCAGCCATAATAATAA+AGG | 0.344392 | 3.1:+31925092 | None:intergenic |
CAAAGATGGACAAAGAGAAT+TGG | 0.346933 | 3.1:-31925389 | MS.gene69488:CDS |
ATCTTAATAACTGCACATCT+AGG | 0.371337 | 3.1:+31925159 | None:intergenic |
GTTAATTCAGTCAAGGAAAT+GGG | 0.373577 | 3.1:-31925459 | MS.gene69488:CDS |
TCTGAAATCATCATACAATT+CGG | 0.401154 | 3.1:+31925294 | None:intergenic |
TCAATGTTCCATTTCTCTAC+TGG | 0.408911 | 3.1:-31925535 | MS.gene69488:CDS |
TGTTAATTCAGTCAAGGAAA+TGG | 0.429636 | 3.1:-31925460 | MS.gene69488:CDS |
ATTGGATACCAGTAGAGAAA+TGG | 0.437001 | 3.1:+31925527 | None:intergenic |
TGCTTGGCGAACGCTACATT+GGG | 0.443987 | 3.1:+31925501 | None:intergenic |
TGCTATTCTGATCCGTAGCT+TGG | 0.455085 | 3.1:-31925196 | MS.gene69488:CDS |
AAAGATGGACAAAGAGAATT+GGG | 0.462885 | 3.1:-31925388 | MS.gene69488:CDS |
CTCAACAAATCTAGAATGCT+TGG | 0.472071 | 3.1:+31925485 | None:intergenic |
ATGCTTGGCGAACGCTACAT+TGG | 0.474402 | 3.1:+31925500 | None:intergenic |
AAGCTACGGATCAGAATAGC+AGG | 0.501991 | 3.1:+31925198 | None:intergenic |
TCTTAATAACTGCACATCTA+GGG | 0.530762 | 3.1:+31925160 | None:intergenic |
CTTACACCACAAGACATTGT+AGG | 0.539834 | 3.1:-31925225 | MS.gene69488:CDS |
TCATTCTGTTGCAAACATTG+AGG | 0.540275 | 3.1:-31925580 | MS.gene69488:CDS |
CAAGCATTCTAGATTTGTTG+AGG | 0.550123 | 3.1:-31925484 | MS.gene69488:CDS |
TAAGTATCTTCTCCAAGCTA+CGG | 0.568984 | 3.1:+31925184 | None:intergenic |
ACTTCAAGTAATCGCAAAGA+TGG | 0.569887 | 3.1:-31925403 | MS.gene69488:CDS |
TGAGGCTGTTAATTCAGTCA+AGG | 0.573328 | 3.1:-31925466 | MS.gene69488:CDS |
TTAATTCAGTCAAGGAAATG+GGG | 0.604956 | 3.1:-31925458 | MS.gene69488:CDS |
AACTTCTTGGTGAACGATGT+GGG | 0.606341 | 3.1:-31925249 | MS.gene69488:CDS |
AAAACAAAATAAGACATCAA+AGG | 0.606684 | 3.1:+31925429 | None:intergenic |
GAACTTCTTGGTGAACGATG+TGG | 0.641423 | 3.1:-31925250 | MS.gene69488:CDS |
GGGCATCCTACAATGTCTTG+TGG | 0.642181 | 3.1:+31925219 | None:intergenic |
AGTAGAGAAATGGAACATTG+AGG | 0.673786 | 3.1:+31925537 | None:intergenic |
AGCTACGGATCAGAATAGCA+GGG | 0.695511 | 3.1:+31925199 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAACAAAATAAGACATCAA+AGG | + | chr3.1:31925239-31925258 | None:intergenic | 20.0% |
!! | CATAAGTACCTTTATTATTA+TGG | - | chr3.1:31925565-31925584 | MS.gene69488:CDS | 20.0% |
!!! | TATTAAGATTTTGAAGTCAA+GGG | - | chr3.1:31925520-31925539 | MS.gene69488:CDS | 20.0% |
!!! | TTATTAAGATTTTGAAGTCA+AGG | - | chr3.1:31925519-31925538 | MS.gene69488:CDS | 20.0% |
!!! | TTTGATGTCTTATTTTGTTT+TGG | - | chr3.1:31925238-31925257 | MS.gene69488:CDS | 20.0% |
! | TATGAAAACAATGAACTTCT+TGG | - | chr3.1:31925403-31925422 | MS.gene69488:CDS | 25.0% |
! | TTTCTCAGCCATAATAATAA+AGG | + | chr3.1:31925576-31925595 | None:intergenic | 25.0% |
!! | TCTGAAATCATCATACAATT+CGG | + | chr3.1:31925374-31925393 | None:intergenic | 25.0% |
!!! | ATTAAGATTTTGAAGTCAAG+GGG | - | chr3.1:31925521-31925540 | MS.gene69488:CDS | 25.0% |
!!! | CAAAAATCAAGATTTTTGAG+AGG | - | chr3.1:31925303-31925322 | MS.gene69488:CDS | 25.0% |
AAAGATGGACAAAGAGAATT+GGG | - | chr3.1:31925277-31925296 | MS.gene69488:CDS | 30.0% | |
ATCTTAATAACTGCACATCT+AGG | + | chr3.1:31925509-31925528 | None:intergenic | 30.0% | |
GTTAATTCAGTCAAGGAAAT+GGG | - | chr3.1:31925206-31925225 | MS.gene69488:CDS | 30.0% | |
TCTTAATAACTGCACATCTA+GGG | + | chr3.1:31925508-31925527 | None:intergenic | 30.0% | |
TGTTAATTCAGTCAAGGAAA+TGG | - | chr3.1:31925205-31925224 | MS.gene69488:CDS | 30.0% | |
TTAATTCAGTCAAGGAAATG+GGG | - | chr3.1:31925207-31925226 | MS.gene69488:CDS | 30.0% | |
! | TATGGCTGAGAAAACATTTT+TGG | - | chr3.1:31925583-31925602 | MS.gene69488:CDS | 30.0% |
!! | AAATCAAGATTTTTGAGAGG+TGG | - | chr3.1:31925306-31925325 | MS.gene69488:CDS | 30.0% |
!! | AATCAAGATTTTTGAGAGGT+GGG | - | chr3.1:31925307-31925326 | MS.gene69488:CDS | 30.0% |
!!! | ATTGAGGTTTTGAGAAAACT+TGG | - | chr3.1:31925101-31925120 | MS.gene69488:CDS | 30.0% |
ACTTCAAGTAATCGCAAAGA+TGG | - | chr3.1:31925262-31925281 | MS.gene69488:CDS | 35.0% | |
AGTAGAGAAATGGAACATTG+AGG | + | chr3.1:31925131-31925150 | None:intergenic | 35.0% | |
ATTGGATACCAGTAGAGAAA+TGG | + | chr3.1:31925141-31925160 | None:intergenic | 35.0% | |
CAAAGATGGACAAAGAGAAT+TGG | - | chr3.1:31925276-31925295 | MS.gene69488:CDS | 35.0% | |
TAAGTATCTTCTCCAAGCTA+CGG | + | chr3.1:31925484-31925503 | None:intergenic | 35.0% | |
TCAATGTTCCATTTCTCTAC+TGG | - | chr3.1:31925130-31925149 | MS.gene69488:CDS | 35.0% | |
TCATTCTGTTGCAAACATTG+AGG | - | chr3.1:31925085-31925104 | MS.gene69488:CDS | 35.0% | |
! | CTCAACAAATCTAGAATGCT+TGG | + | chr3.1:31925183-31925202 | None:intergenic | 35.0% |
!! | ATCAAGATTTTTGAGAGGTG+GGG | - | chr3.1:31925308-31925327 | MS.gene69488:CDS | 35.0% |
!! | CAAGCATTCTAGATTTGTTG+AGG | - | chr3.1:31925181-31925200 | MS.gene69488:CDS | 35.0% |
!! | TCATACAATTCGGCTGTTTT+TGG | + | chr3.1:31925364-31925383 | None:intergenic | 35.0% |
AACTTCTTGGTGAACGATGT+GGG | - | chr3.1:31925416-31925435 | MS.gene69488:CDS | 40.0% | |
CTTACACCACAAGACATTGT+AGG | - | chr3.1:31925440-31925459 | MS.gene69488:CDS | 40.0% | |
GAACGCTACATTGGGAAAAT+TGG | + | chr3.1:31925159-31925178 | None:intergenic | 40.0% | |
TGAGGCTGTTAATTCAGTCA+AGG | - | chr3.1:31925199-31925218 | MS.gene69488:CDS | 40.0% | |
! | GTCGAGAGATATGTGTCTTT+TGG | - | chr3.1:31925334-31925353 | MS.gene69488:CDS | 40.0% |
AAGCTACGGATCAGAATAGC+AGG | + | chr3.1:31925470-31925489 | None:intergenic | 45.0% | |
AGCTACGGATCAGAATAGCA+GGG | + | chr3.1:31925469-31925488 | None:intergenic | 45.0% | |
GAACTTCTTGGTGAACGATG+TGG | - | chr3.1:31925415-31925434 | MS.gene69488:CDS | 45.0% | |
TGCTATTCTGATCCGTAGCT+TGG | - | chr3.1:31925469-31925488 | MS.gene69488:CDS | 45.0% | |
!! | AGATTTTTGAGAGGTGGGGT+TGG | - | chr3.1:31925312-31925331 | MS.gene69488:CDS | 45.0% |
ATGCTTGGCGAACGCTACAT+TGG | + | chr3.1:31925168-31925187 | None:intergenic | 50.0% | |
GGGCATCCTACAATGTCTTG+TGG | + | chr3.1:31925449-31925468 | None:intergenic | 50.0% | |
TGCTTGGCGAACGCTACATT+GGG | + | chr3.1:31925167-31925186 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 31925077 | 31925610 | 31925077 | ID=MS.gene69488 |
chr3.1 | mRNA | 31925077 | 31925610 | 31925077 | ID=MS.gene69488.t1;Parent=MS.gene69488 |
chr3.1 | exon | 31925077 | 31925610 | 31925077 | ID=MS.gene69488.t1.exon1;Parent=MS.gene69488.t1 |
chr3.1 | CDS | 31925077 | 31925610 | 31925077 | ID=cds.MS.gene69488.t1;Parent=MS.gene69488.t1 |
Gene Sequence |
Protein sequence |