Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69672.t1 | XP_013445993.1 | 88.1 | 429 | 32 | 4 | 1 | 420 | 1 | 419 | 4.50E-208 | 733.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69672.t1 | Q0WNR2 | 33.9 | 448 | 241 | 14 | 3 | 417 | 10 | 435 | 1.9e-53 | 211.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69672.t1 | A0A072U2K1 | 88.1 | 429 | 32 | 4 | 1 | 420 | 1 | 419 | 3.2e-208 | 733.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene69672.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69672.t1 | MTR_8g064700 | 88.112 | 429 | 32 | 4 | 1 | 420 | 1 | 419 | 0.0 | 766 |
| MS.gene69672.t1 | MTR_1g112680 | 29.885 | 522 | 248 | 18 | 3 | 420 | 9 | 516 | 1.49e-65 | 218 |
| MS.gene69672.t1 | MTR_2g038040 | 31.977 | 172 | 106 | 3 | 243 | 405 | 51 | 220 | 3.45e-20 | 89.7 |
| MS.gene69672.t1 | MTR_3g498695 | 29.091 | 220 | 121 | 6 | 218 | 416 | 270 | 475 | 1.20e-15 | 79.0 |
| MS.gene69672.t1 | MTR_3g498695 | 28.959 | 221 | 121 | 6 | 218 | 416 | 270 | 476 | 1.82e-15 | 78.6 |
| MS.gene69672.t1 | MTR_4g091910 | 29.612 | 206 | 114 | 5 | 217 | 414 | 20 | 202 | 6.47e-15 | 73.6 |
| MS.gene69672.t1 | MTR_3g030700 | 29.952 | 207 | 116 | 7 | 228 | 417 | 176 | 370 | 3.05e-14 | 74.3 |
| MS.gene69672.t1 | MTR_4g091990 | 31.548 | 168 | 74 | 5 | 235 | 394 | 36 | 170 | 4.80e-13 | 68.2 |
| MS.gene69672.t1 | MTR_4g057270 | 28.221 | 163 | 95 | 3 | 235 | 388 | 140 | 289 | 4.98e-13 | 70.1 |
| MS.gene69672.t1 | MTR_2g084280 | 30.247 | 162 | 87 | 5 | 236 | 388 | 125 | 269 | 7.54e-13 | 69.3 |
| MS.gene69672.t1 | MTR_2g081040 | 25.628 | 199 | 106 | 6 | 243 | 417 | 176 | 356 | 4.64e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69672.t1 | AT1G10610 | 32.517 | 449 | 246 | 13 | 3 | 417 | 10 | 435 | 2.30e-63 | 210 |
| MS.gene69672.t1 | AT1G10610 | 30.969 | 423 | 235 | 13 | 29 | 417 | 6 | 405 | 9.76e-49 | 171 |
| MS.gene69672.t1 | AT2G16910 | 43.421 | 152 | 72 | 5 | 3 | 147 | 8 | 152 | 1.52e-37 | 144 |
| MS.gene69672.t1 | AT2G16910 | 35.714 | 196 | 109 | 4 | 242 | 420 | 312 | 507 | 1.19e-25 | 109 |
| MS.gene69672.t1 | AT1G10610 | 28.056 | 360 | 208 | 11 | 87 | 417 | 1 | 338 | 1.11e-28 | 115 |
| MS.gene69672.t1 | AT5G57150 | 32.934 | 167 | 99 | 3 | 243 | 401 | 53 | 214 | 1.04e-22 | 96.7 |
| MS.gene69672.t1 | AT5G57150 | 32.143 | 168 | 101 | 3 | 243 | 402 | 54 | 216 | 1.24e-22 | 95.9 |
| MS.gene69672.t1 | AT5G57150 | 32.530 | 166 | 99 | 3 | 243 | 400 | 54 | 214 | 1.42e-22 | 95.9 |
| MS.gene69672.t1 | AT5G57150 | 32.530 | 166 | 99 | 3 | 243 | 400 | 53 | 213 | 1.50e-22 | 95.9 |
| MS.gene69672.t1 | AT5G57150 | 32.530 | 166 | 99 | 3 | 243 | 400 | 54 | 214 | 1.67e-22 | 96.7 |
| MS.gene69672.t1 | AT4G29930 | 28.144 | 167 | 93 | 3 | 243 | 401 | 53 | 200 | 1.17e-15 | 76.3 |
| MS.gene69672.t1 | AT4G29930 | 27.381 | 168 | 92 | 4 | 243 | 402 | 53 | 198 | 3.94e-15 | 75.1 |
| MS.gene69672.t1 | AT4G29930 | 27.545 | 167 | 91 | 4 | 243 | 401 | 53 | 197 | 3.95e-15 | 74.7 |
| MS.gene69672.t1 | AT4G29930 | 28.962 | 183 | 99 | 6 | 243 | 402 | 53 | 227 | 5.01e-15 | 75.1 |
| MS.gene69672.t1 | AT4G29930 | 28.962 | 183 | 99 | 6 | 243 | 402 | 53 | 227 | 5.01e-15 | 75.1 |
| MS.gene69672.t1 | AT4G29930 | 29.121 | 182 | 98 | 6 | 243 | 401 | 53 | 226 | 5.38e-15 | 75.1 |
| MS.gene69672.t1 | AT2G28160 | 28.302 | 159 | 93 | 4 | 239 | 388 | 126 | 272 | 3.71e-13 | 70.5 |
| MS.gene69672.t1 | AT2G28160 | 28.302 | 159 | 93 | 4 | 239 | 388 | 126 | 272 | 3.98e-13 | 70.5 |
Find 74 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACAGTGTCTCTTTATTCT+AGG | 0.204070 | 8.3:+37248638 | MS.gene69672:CDS |
| TATGTTGTTGTTTGGAAATA+TGG | 0.204753 | 8.3:+37248249 | MS.gene69672:CDS |
| TTCATGATATTTATATCTTC+TGG | 0.214432 | 8.3:-37249225 | None:intergenic |
| ATATATACCTTGGTTATATT+CGG | 0.247363 | 8.3:-37249627 | None:intergenic |
| AACTTGTGAAGAAAATAATT+TGG | 0.257116 | 8.3:+37248540 | MS.gene69672:CDS |
| ATCGGTGAGAGGTAGGTTTC+TGG | 0.265091 | 8.3:-37250004 | None:intergenic |
| CTCAACAAGACCGCCAATAA+TGG | 0.265213 | 8.3:-37249086 | None:intergenic |
| TTCTGACTGGATGATGAAAA+AGG | 0.289400 | 8.3:-37248582 | None:intergenic |
| AAAAGTTCTGAACATTCTTA+TGG | 0.297211 | 8.3:+37250340 | MS.gene69672:CDS |
| GAATAAAGAGACACTGTAAA+AGG | 0.342258 | 8.3:-37248634 | None:intergenic |
| TCAACAAGACCGCCAATAAT+GGG | 0.342312 | 8.3:-37249085 | None:intergenic |
| CTTGGGATTATGTTGTTGTT+TGG | 0.348246 | 8.3:+37248241 | MS.gene69672:CDS |
| TCATGATATTTATATCTTCT+GGG | 0.361224 | 8.3:-37249224 | None:intergenic |
| ATTGAAGCAATAGATTCATT+TGG | 0.361378 | 8.3:+37250278 | MS.gene69672:CDS |
| ATCTTCGCCATTTCCACAAT+TGG | 0.368226 | 8.3:-37249487 | None:intergenic |
| GCAAACATGACCACATTTGA+TGG | 0.371124 | 8.3:+37250317 | MS.gene69672:CDS |
| ATAATTTGGCTTCCATTTGT+AGG | 0.380168 | 8.3:+37248554 | MS.gene69672:CDS |
| TTGGGATGTTGCTGTGGTGG+TGG | 0.394599 | 8.3:+37248487 | MS.gene69672:CDS |
| TATATACCTTGGTTATATTC+GGG | 0.397727 | 8.3:-37249626 | None:intergenic |
| ACCTCATGGATAAGCCATCT+TGG | 0.422456 | 8.3:-37248945 | None:intergenic |
| GGATGCGATTGAATATATAA+TGG | 0.425745 | 8.3:+37249864 | MS.gene69672:intron |
| ATCTTATCACAGAGAGGAAT+AGG | 0.426459 | 8.3:+37249559 | MS.gene69672:CDS |
| TCGAGTGCCAATTGTGGAAA+TGG | 0.428882 | 8.3:+37249480 | MS.gene69672:CDS |
| TGTAGGTTCATTGAGTGGTT+GGG | 0.441252 | 8.3:+37248469 | MS.gene69672:intron |
| CTTTGTTGAGAGGAAAGCTT+GGG | 0.443033 | 8.3:+37248224 | MS.gene69672:CDS |
| AATGATAAGTGCTCAGTTGA+AGG | 0.446352 | 8.3:-37249360 | None:intergenic |
| TCTGAACATTCTTATGGTTG+AGG | 0.459060 | 8.3:+37250346 | MS.gene69672:CDS |
| TCACAAGTCTTTGTTCTGAC+TGG | 0.460884 | 8.3:-37248595 | None:intergenic |
| TAATTTGGCTTCCATTTGTA+GGG | 0.474687 | 8.3:+37248555 | MS.gene69672:CDS |
| GTGTAGGTTCATTGAGTGGT+TGG | 0.488555 | 8.3:+37248468 | MS.gene69672:intron |
| AGATAAAGAAAATATTGTTA+AGG | 0.491618 | 8.3:+37249506 | MS.gene69672:CDS |
| TGGTTGGGATGTTGCTGTGG+TGG | 0.495834 | 8.3:+37248484 | MS.gene69672:CDS |
| CCTTTGTTGAGAGGAAAGCT+TGG | 0.499952 | 8.3:+37248223 | MS.gene69672:CDS |
| AGAATTTCAAGAAGAGGTCA+AGG | 0.513955 | 8.3:+37249906 | MS.gene69672:CDS |
| TTTGTCCCAGGCAACTGCGC+AGG | 0.514458 | 8.3:+37251077 | MS.gene69672:intron |
| TTTGTAGTGTGCTCTTCCCA+CGG | 0.515454 | 8.3:-37249945 | None:intergenic |
| AGAGAAAGAATTTCAAGAAG+AGG | 0.515681 | 8.3:+37249900 | MS.gene69672:CDS |
| TGAGAAGGTGAAGTTGAAAG+AGG | 0.517970 | 8.3:+37248516 | MS.gene69672:CDS |
| TTCTTAGACCCTTTGTTGAG+AGG | 0.521603 | 8.3:+37248214 | MS.gene69672:CDS |
| CTCCATCCGTGTCTTTCTAG+TGG | 0.522923 | 8.3:-37250049 | None:intergenic |
| CAAGCTTTCCTCTCAACAAA+GGG | 0.525491 | 8.3:-37248222 | None:intergenic |
| GCTAAAATTGAAGTTCATGT+TGG | 0.530705 | 8.3:-37249310 | None:intergenic |
| GGTCAAGGCTTTAGAAGTTG+AGG | 0.531075 | 8.3:+37249921 | MS.gene69672:CDS |
| AGACACTGTAAAAGGAAGCT+TGG | 0.535351 | 8.3:-37248626 | None:intergenic |
| CCAAGCTTTCCTCTCAACAA+AGG | 0.551769 | 8.3:-37248223 | None:intergenic |
| GCATGATACACTTTCTCTTG+AGG | 0.560146 | 8.3:-37249531 | None:intergenic |
| GATCAAGATCGGTGAGAGGT+AGG | 0.562213 | 8.3:-37250011 | None:intergenic |
| TTATCATTTGATTCAAACGA+TGG | 0.569408 | 8.3:+37249375 | MS.gene69672:CDS |
| AGACGAACTTTGATCAAGAT+CGG | 0.586612 | 8.3:-37250022 | None:intergenic |
| GTGATATTGCTACCTCTGCA+TGG | 0.587930 | 8.3:-37248917 | None:intergenic |
| CAATATCACAACAACCAAGA+TGG | 0.588239 | 8.3:+37248931 | MS.gene69672:CDS |
| CTTTAGAAGTTGAGGACCGT+GGG | 0.594996 | 8.3:+37249929 | MS.gene69672:CDS |
| GAGTGGTTGGGATGTTGCTG+TGG | 0.602776 | 8.3:+37248481 | MS.gene69672:CDS |
| AGTATTTGATGCAGAAAACA+AGG | 0.604081 | 8.3:+37251124 | MS.gene69672:CDS |
| TCTTGTGTAGGTTCATTGAG+TGG | 0.606506 | 8.3:+37248464 | MS.gene69672:intron |
| TGTAGTTCGAGTGCCAATTG+TGG | 0.606732 | 8.3:+37249474 | MS.gene69672:CDS |
| GTAGAAGTGAATCATATCGC+CGG | 0.619401 | 8.3:+37250197 | MS.gene69672:CDS |
| GGTTGATTCAAATATTCAAG+CGG | 0.621147 | 8.3:-37249408 | None:intergenic |
| GCTTTAGAAGTTGAGGACCG+TGG | 0.622520 | 8.3:+37249928 | MS.gene69672:CDS |
| AATATGGAAATGATCCAACT+AGG | 0.624297 | 8.3:+37248265 | MS.gene69672:CDS |
| CAACAAGACCGCCAATAATG+GGG | 0.630577 | 8.3:-37249084 | None:intergenic |
| AAAGACAAAGAACTTGCAGA+AGG | 0.635182 | 8.3:+37249979 | MS.gene69672:CDS |
| GATCTACAGTGTCCATGCAG+AGG | 0.648208 | 8.3:+37248905 | MS.gene69672:intron |
| AGGAGAAACAGAATAAAACA+AGG | 0.649066 | 8.3:+37249579 | MS.gene69672:CDS |
| TTCCACTAGAAAGACACGGA+TGG | 0.652546 | 8.3:+37250047 | MS.gene69672:CDS |
| ACCAAGATGGCTTATCCATG+AGG | 0.659718 | 8.3:+37248944 | MS.gene69672:CDS |
| CTGATTCCACTAGAAAGACA+CGG | 0.659773 | 8.3:+37250043 | MS.gene69672:CDS |
| CACTAGAAAGACACGGATGG+AGG | 0.661720 | 8.3:+37250050 | MS.gene69672:CDS |
| GGAGAAACAGAATAAAACAA+GGG | 0.669280 | 8.3:+37249580 | MS.gene69672:CDS |
| CTTTGATCAAGATCGGTGAG+AGG | 0.680787 | 8.3:-37250015 | None:intergenic |
| TGGTGGTGGAAATATTGAGA+AGG | 0.686408 | 8.3:+37248501 | MS.gene69672:CDS |
| TCTAGTCCCGAATATAACCA+AGG | 0.688391 | 8.3:+37249620 | MS.gene69672:CDS |
| TTGTGCTGTGAGCAGAAGCA+AGG | 0.689984 | 8.3:+37250239 | MS.gene69672:CDS |
| AGTCAGAACAAAGACTTGTG+AGG | 0.691527 | 8.3:+37248597 | MS.gene69672:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGATTAAACATAAATAAA+TGG | - | chr8.3:37248858-37248877 | None:intergenic | 10.0% |
| !! | AGATAAAGAAAATATTGTTA+AGG | + | chr8.3:37249506-37249525 | MS.gene69672:CDS | 15.0% |
| !! | TAAACAATTTATATATACCT+TGG | - | chr8.3:37249640-37249659 | None:intergenic | 15.0% |
| !! | TTACAAATGAATAACAAAAT+GGG | - | chr8.3:37248300-37248319 | None:intergenic | 15.0% |
| !! | TTTACAAATGAATAACAAAA+TGG | - | chr8.3:37248301-37248320 | None:intergenic | 15.0% |
| !!! | AATTTTATTGTTTCTTTTCT+TGG | + | chr8.3:37250136-37250155 | MS.gene69672:intron | 15.0% |
| !! | AAAATTCAATTAAGGTAATG+AGG | - | chr8.3:37250731-37250750 | None:intergenic | 20.0% |
| !! | AAATCTTAGCACTTATTTAT+TGG | + | chr8.3:37249136-37249155 | MS.gene69672:intron | 20.0% |
| !! | AAATTCAATTAAGGTAATGA+GGG | - | chr8.3:37250730-37250749 | None:intergenic | 20.0% |
| !! | AACTTGTGAAGAAAATAATT+TGG | + | chr8.3:37248540-37248559 | MS.gene69672:CDS | 20.0% |
| !! | ACAAAAATTAATTTACCTCA+TGG | - | chr8.3:37248962-37248981 | None:intergenic | 20.0% |
| !! | ATATATACCTTGGTTATATT+CGG | - | chr8.3:37249630-37249649 | None:intergenic | 20.0% |
| !! | ATTGAGTATTTAAATTAGAC+AGG | + | chr8.3:37250473-37250492 | MS.gene69672:intron | 20.0% |
| !! | TCATGATATTTATATCTTCT+GGG | - | chr8.3:37249227-37249246 | None:intergenic | 20.0% |
| !! | TCTAATTTAAATACTCAATC+TGG | - | chr8.3:37250472-37250491 | None:intergenic | 20.0% |
| !! | TGTTTAATCATTGAAATGAA+AGG | + | chr8.3:37248866-37248885 | MS.gene69672:intron | 20.0% |
| !! | TTCAATATAATTATGTGTGT+CGG | - | chr8.3:37248757-37248776 | None:intergenic | 20.0% |
| !! | TTCATGATATTTATATCTTC+TGG | - | chr8.3:37249228-37249247 | None:intergenic | 20.0% |
| !!! | ATTGTTTTTTTACTATGTCA+TGG | + | chr8.3:37250101-37250120 | MS.gene69672:intron | 20.0% |
| !!! | TAGTTTTTCAAAATTGTCTA+CGG | - | chr8.3:37250920-37250939 | None:intergenic | 20.0% |
| !!! | TATATTCGATTTGAAGTATT+CGG | - | chr8.3:37250824-37250843 | None:intergenic | 20.0% |
| !!! | TCATTTTCTCAAGTTATTAT+TGG | + | chr8.3:37248366-37248385 | MS.gene69672:intron | 20.0% |
| ! | AAAACTAGAGATTTCATTCA+TGG | + | chr8.3:37250933-37250952 | MS.gene69672:intron | 25.0% |
| ! | AATGAAGCATAAATACTCTT+CGG | + | chr8.3:37248687-37248706 | MS.gene69672:intron | 25.0% |
| ! | AATGAGATTATTGTAGATAG+TGG | - | chr8.3:37250855-37250874 | None:intergenic | 25.0% |
| ! | ATTGAAGCAATAGATTCATT+TGG | + | chr8.3:37250278-37250297 | MS.gene69672:CDS | 25.0% |
| ! | GATAGAGAATCAATGAAATA+GGG | - | chr8.3:37251009-37251028 | None:intergenic | 25.0% |
| ! | GGTAAAAATTATCTGTTGTA+AGG | - | chr8.3:37250709-37250728 | None:intergenic | 25.0% |
| ! | TATATACCTTGGTTATATTC+GGG | - | chr8.3:37249629-37249648 | None:intergenic | 25.0% |
| ! | TATCTCCATATTTAAAGACT+AGG | + | chr8.3:37250967-37250986 | MS.gene69672:intron | 25.0% |
| ! | TATGAAGCATATATACTCAT+CGG | + | chr8.3:37248325-37248344 | MS.gene69672:intron | 25.0% |
| ! | TCAAGTTATTATTGGTATTG+AGG | + | chr8.3:37248374-37248393 | MS.gene69672:intron | 25.0% |
| ! | TTATCATTTGATTCAAACGA+TGG | + | chr8.3:37249375-37249394 | MS.gene69672:CDS | 25.0% |
| !! | AAATACTCTCTGATTTTCTT+CGG | - | chr8.3:37251111-37251130 | None:intergenic | 25.0% |
| !! | ATCAACCTAGTCTTTAAATA+TGG | - | chr8.3:37250975-37250994 | None:intergenic | 25.0% |
| !! | CTGAAATTTTATTGCGTTTT+TGG | - | chr8.3:37249443-37249462 | None:intergenic | 25.0% |
| !! | CTTAATCATGAAATCTTTTC+CGG | - | chr8.3:37250219-37250238 | None:intergenic | 25.0% |
| !! | GAGGTAAATTAATTTTTGTG+TGG | + | chr8.3:37248963-37248982 | MS.gene69672:intron | 25.0% |
| !! | GGAATGTAAAAAGTATGATT+TGG | - | chr8.3:37250451-37250470 | None:intergenic | 25.0% |
| !! | TATAACTTTTACCGAAATCA+TGG | - | chr8.3:37249737-37249756 | None:intergenic | 25.0% |
| !!! | AAAAGTTCTGAACATTCTTA+TGG | + | chr8.3:37250340-37250359 | MS.gene69672:CDS | 25.0% |
| !!! | TAAAAAGTATGATTTGGTGT+GGG | - | chr8.3:37250445-37250464 | None:intergenic | 25.0% |
| !!! | TATGTTGTTGTTTGGAAATA+TGG | + | chr8.3:37248249-37248268 | MS.gene69672:CDS | 25.0% |
| !!! | TTAACTGTTAATGTTTTGAC+AGG | + | chr8.3:37249036-37249055 | MS.gene69672:intron | 25.0% |
| AACATAGCCTAATCATTCTT+TGG | - | chr8.3:37250520-37250539 | None:intergenic | 30.0% | |
| AACCTACACAAGAGAAATAT+TGG | - | chr8.3:37248457-37248476 | None:intergenic | 30.0% | |
| AAGAATGATTAGGCTATGTT+TGG | + | chr8.3:37250520-37250539 | MS.gene69672:intron | 30.0% | |
| AAGGGAATCTTATGAACTTA+CGG | - | chr8.3:37251036-37251055 | None:intergenic | 30.0% | |
| AATATAATTATGTGTGTCGG+TGG | - | chr8.3:37248754-37248773 | None:intergenic | 30.0% | |
| AATATGGAAATGATCCAACT+AGG | + | chr8.3:37248265-37248284 | MS.gene69672:CDS | 30.0% | |
| AATCTTATGAACTTACGGAT+GGG | - | chr8.3:37251031-37251050 | None:intergenic | 30.0% | |
| AGAGAAAGAATTTCAAGAAG+AGG | + | chr8.3:37249900-37249919 | MS.gene69672:CDS | 30.0% | |
| AGCTTAAATACTACTTGAAG+TGG | - | chr8.3:37250682-37250701 | None:intergenic | 30.0% | |
| AGGAGAAACAGAATAAAACA+AGG | + | chr8.3:37249579-37249598 | MS.gene69672:CDS | 30.0% | |
| AGTATTTGATGCAGAAAACA+AGG | + | chr8.3:37251124-37251143 | MS.gene69672:CDS | 30.0% | |
| ATCCAATATTTCTCTTGTGT+AGG | + | chr8.3:37248452-37248471 | MS.gene69672:intron | 30.0% | |
| CTAAAAATCTTATCACAGAG+AGG | + | chr8.3:37249553-37249572 | MS.gene69672:CDS | 30.0% | |
| GAATAAAGAGACACTGTAAA+AGG | - | chr8.3:37248637-37248656 | None:intergenic | 30.0% | |
| GATAATAGCAAACTAACTCA+TGG | - | chr8.3:37250409-37250428 | None:intergenic | 30.0% | |
| GCTAAAATTGAAGTTCATGT+TGG | - | chr8.3:37249313-37249332 | None:intergenic | 30.0% | |
| GGAGAAACAGAATAAAACAA+GGG | + | chr8.3:37249580-37249599 | MS.gene69672:CDS | 30.0% | |
| GGATAGAGAATCAATGAAAT+AGG | - | chr8.3:37251010-37251029 | None:intergenic | 30.0% | |
| GGATGCGATTGAATATATAA+TGG | + | chr8.3:37249864-37249883 | MS.gene69672:intron | 30.0% | |
| GTGAAGCTTCAACAAAATTA+CGG | + | chr8.3:37249759-37249778 | MS.gene69672:intron | 30.0% | |
| TAACCTCGTTACAATAGAAA+GGG | - | chr8.3:37251054-37251073 | None:intergenic | 30.0% | |
| TGAGTTTGCCATAATTACAT+TGG | + | chr8.3:37249707-37249726 | MS.gene69672:intron | 30.0% | |
| TTAACCTCGTTACAATAGAA+AGG | - | chr8.3:37251055-37251074 | None:intergenic | 30.0% | |
| TTACAGTGTCTCTTTATTCT+AGG | + | chr8.3:37248638-37248657 | MS.gene69672:CDS | 30.0% | |
| ! | AATACTCTCTGATTTTCTTC+GGG | - | chr8.3:37251110-37251129 | None:intergenic | 30.0% |
| ! | ATAATTTGGCTTCCATTTGT+AGG | + | chr8.3:37248554-37248573 | MS.gene69672:CDS | 30.0% |
| ! | GGTTGATTCAAATATTCAAG+CGG | - | chr8.3:37249411-37249430 | None:intergenic | 30.0% |
| ! | GTAATTTTGTTGAAGCTTCA+CGG | - | chr8.3:37249760-37249779 | None:intergenic | 30.0% |
| ! | TAATTTGGCTTCCATTTGTA+GGG | + | chr8.3:37248555-37248574 | MS.gene69672:CDS | 30.0% |
| ! | TGATCAAAATAGAGCTGTTT+TGG | + | chr8.3:37250594-37250613 | MS.gene69672:intron | 30.0% |
| !! | AACTTCAATTTTAGCATGGA+AGG | + | chr8.3:37249318-37249337 | MS.gene69672:CDS | 30.0% |
| !! | CAAGTTTTAATCCCCATTAT+TGG | + | chr8.3:37249073-37249092 | MS.gene69672:CDS | 30.0% |
| !! | CATGAACTTCAATTTTAGCA+TGG | + | chr8.3:37249314-37249333 | MS.gene69672:CDS | 30.0% |
| !! | GAGTTAGTTTGCTATTATCT+TGG | + | chr8.3:37250410-37250429 | MS.gene69672:intron | 30.0% |
| !! | GTAAAAAGTATGATTTGGTG+TGG | - | chr8.3:37250446-37250465 | None:intergenic | 30.0% |
| AAAGACAAAGAACTTGCAGA+AGG | + | chr8.3:37249979-37249998 | MS.gene69672:CDS | 35.0% | |
| AATGATAAGTGCTCAGTTGA+AGG | - | chr8.3:37249363-37249382 | None:intergenic | 35.0% | |
| ACATTCTTATGGTTGAGGTA+AGG | + | chr8.3:37250351-37250370 | MS.gene69672:intron | 35.0% | |
| AGAATTTCAAGAAGAGGTCA+AGG | + | chr8.3:37249906-37249925 | MS.gene69672:CDS | 35.0% | |
| AGACGAACTTTGATCAAGAT+CGG | - | chr8.3:37250025-37250044 | None:intergenic | 35.0% | |
| ATCTTATCACAGAGAGGAAT+AGG | + | chr8.3:37249559-37249578 | MS.gene69672:CDS | 35.0% | |
| ATGAAGTATAGACTCAGACA+CGG | - | chr8.3:37248819-37248838 | None:intergenic | 35.0% | |
| ATGGTGGTCCAATGTAATTA+TGG | - | chr8.3:37249718-37249737 | None:intergenic | 35.0% | |
| ATTCCCTTTCTATTGTAACG+AGG | + | chr8.3:37251048-37251067 | MS.gene69672:intron | 35.0% | |
| CAATATCACAACAACCAAGA+TGG | + | chr8.3:37248931-37248950 | MS.gene69672:CDS | 35.0% | |
| CATTCTTATGGTTGAGGTAA+GGG | + | chr8.3:37250352-37250371 | MS.gene69672:intron | 35.0% | |
| CTGAGTCTATACTTCATGAA+TGG | + | chr8.3:37248822-37248841 | MS.gene69672:intron | 35.0% | |
| CTTCCTTCCAAAGAATGATT+AGG | + | chr8.3:37250510-37250529 | MS.gene69672:intron | 35.0% | |
| GAATCTTATGAACTTACGGA+TGG | - | chr8.3:37251032-37251051 | None:intergenic | 35.0% | |
| GCATAAATACTCTTCGGATT+AGG | + | chr8.3:37248693-37248712 | MS.gene69672:intron | 35.0% | |
| TAGCCTAATCATTCTTTGGA+AGG | - | chr8.3:37250516-37250535 | None:intergenic | 35.0% | |
| TATTGATCTGAACATGCACT+AGG | + | chr8.3:37249808-37249827 | MS.gene69672:intron | 35.0% | |
| TCTGAACATTCTTATGGTTG+AGG | + | chr8.3:37250346-37250365 | MS.gene69672:CDS | 35.0% | |
| TCTGACTGGATGATGAAAAA+GGG | - | chr8.3:37248584-37248603 | None:intergenic | 35.0% | |
| TTCTGACTGGATGATGAAAA+AGG | - | chr8.3:37248585-37248604 | None:intergenic | 35.0% | |
| ! | AACAAGGGCTTTTTACTCTA+AGG | + | chr8.3:37249595-37249614 | MS.gene69672:CDS | 35.0% |
| ! | AACTAACTCATGGATTTTCG+TGG | - | chr8.3:37250399-37250418 | None:intergenic | 35.0% |
| ! | AACTTTTACCGAAATCATGG+TGG | - | chr8.3:37249734-37249753 | None:intergenic | 35.0% |
| ! | AGCTATTTGTTACAAGCTAG+CGG | - | chr8.3:37250555-37250574 | None:intergenic | 35.0% |
| ! | CAGAACTTTTCCATCAAATG+TGG | - | chr8.3:37250330-37250349 | None:intergenic | 35.0% |
| ! | CTTGGGATTATGTTGTTGTT+TGG | + | chr8.3:37248241-37248260 | MS.gene69672:CDS | 35.0% |
| !! | AAAAAGGGTATCCCTACAAA+TGG | - | chr8.3:37248569-37248588 | None:intergenic | 35.0% |
| !! | GTTTTAATCCCCATTATTGG+CGG | + | chr8.3:37249076-37249095 | MS.gene69672:CDS | 35.0% |
| !!! | ATGGGTTTTTAGTACCTAGT+TGG | - | chr8.3:37248282-37248301 | None:intergenic | 35.0% |
| !!! | TTGCGTTTTTGGCTTTTAAG+TGG | - | chr8.3:37249432-37249451 | None:intergenic | 35.0% |
| AAATTGTCTACGGCTCTGTT+TGG | - | chr8.3:37250910-37250929 | None:intergenic | 40.0% | |
| AAGAATTGCTACTCTGTGAG+AGG | - | chr8.3:37249842-37249861 | None:intergenic | 40.0% | |
| ACATTGGACCACCATGATTT+CGG | + | chr8.3:37249723-37249742 | MS.gene69672:intron | 40.0% | |
| AGACACTGTAAAAGGAAGCT+TGG | - | chr8.3:37248629-37248648 | None:intergenic | 40.0% | |
| AGTCAGAACAAAGACTTGTG+AGG | + | chr8.3:37248597-37248616 | MS.gene69672:CDS | 40.0% | |
| ATCTTCGCCATTTCCACAAT+TGG | - | chr8.3:37249490-37249509 | None:intergenic | 40.0% | |
| CAAGCTTTCCTCTCAACAAA+GGG | - | chr8.3:37248225-37248244 | None:intergenic | 40.0% | |
| CTGATTCCACTAGAAAGACA+CGG | + | chr8.3:37250043-37250062 | MS.gene69672:CDS | 40.0% | |
| CTTTGTTGAGAGGAAAGCTT+GGG | + | chr8.3:37248224-37248243 | MS.gene69672:CDS | 40.0% | |
| GCAAACATGACCACATTTGA+TGG | + | chr8.3:37250317-37250336 | MS.gene69672:CDS | 40.0% | |
| GCATGATACACTTTCTCTTG+AGG | - | chr8.3:37249534-37249553 | None:intergenic | 40.0% | |
| GTAGAAGTGAATCATATCGC+CGG | + | chr8.3:37250197-37250216 | MS.gene69672:CDS | 40.0% | |
| TCAACAAGACCGCCAATAAT+GGG | - | chr8.3:37249088-37249107 | None:intergenic | 40.0% | |
| TCACAAGTCTTTGTTCTGAC+TGG | - | chr8.3:37248598-37248617 | None:intergenic | 40.0% | |
| TCACAGAGTAGCAATTCTTG+AGG | + | chr8.3:37249843-37249862 | MS.gene69672:intron | 40.0% | |
| TCTAGTCCCGAATATAACCA+AGG | + | chr8.3:37249620-37249639 | MS.gene69672:CDS | 40.0% | |
| TCTTGTGTAGGTTCATTGAG+TGG | + | chr8.3:37248464-37248483 | MS.gene69672:intron | 40.0% | |
| TGAGAAGGTGAAGTTGAAAG+AGG | + | chr8.3:37248516-37248535 | MS.gene69672:CDS | 40.0% | |
| TGTAGGTTCATTGAGTGGTT+GGG | + | chr8.3:37248469-37248488 | MS.gene69672:intron | 40.0% | |
| TTCTTAGACCCTTTGTTGAG+AGG | + | chr8.3:37248214-37248233 | MS.gene69672:CDS | 40.0% | |
| ! | ACGAGGTTAAATTTTGTCCC+AGG | + | chr8.3:37251065-37251084 | MS.gene69672:intron | 40.0% |
| ! | AGAAGCAAGGTGTGTTTTCA+AGG | + | chr8.3:37250252-37250271 | MS.gene69672:CDS | 40.0% |
| ! | CTTTGGAAGGAAGTTACAAG+TGG | - | chr8.3:37250503-37250522 | None:intergenic | 40.0% |
| ! | GCTATTTGTTACAAGCTAGC+GGG | - | chr8.3:37250554-37250573 | None:intergenic | 40.0% |
| ! | TCATCGGATTAGACATGTTC+TGG | + | chr8.3:37248341-37248360 | MS.gene69672:intron | 40.0% |
| !! | TGGTGGTGGAAATATTGAGA+AGG | + | chr8.3:37248501-37248520 | MS.gene69672:CDS | 40.0% |
| !!! | ATGTTTTGACAGGACTCAGT+TGG | + | chr8.3:37249046-37249065 | MS.gene69672:intron | 40.0% |
| ACCAAGATGGCTTATCCATG+AGG | + | chr8.3:37248944-37248963 | MS.gene69672:CDS | 45.0% | |
| ACCTCATGGATAAGCCATCT+TGG | - | chr8.3:37248948-37248967 | None:intergenic | 45.0% | |
| ACTCAGACACGACACAGATA+TGG | - | chr8.3:37248403-37248422 | None:intergenic | 45.0% | |
| CAACAAGACCGCCAATAATG+GGG | - | chr8.3:37249087-37249106 | None:intergenic | 45.0% | |
| CCAAGCTTTCCTCTCAACAA+AGG | - | chr8.3:37248226-37248245 | None:intergenic | 45.0% | |
| CCTTTGTTGAGAGGAAAGCT+TGG | + | chr8.3:37248223-37248242 | MS.gene69672:CDS | 45.0% | |
| CTCAACAAGACCGCCAATAA+TGG | - | chr8.3:37249089-37249108 | None:intergenic | 45.0% | |
| CTTTGATCAAGATCGGTGAG+AGG | - | chr8.3:37250018-37250037 | None:intergenic | 45.0% | |
| GATTAGGCGTGCAACAATGT+CGG | + | chr8.3:37248709-37248728 | MS.gene69672:intron | 45.0% | |
| GTGATATTGCTACCTCTGCA+TGG | - | chr8.3:37248920-37248939 | None:intergenic | 45.0% | |
| GTGTAGGTTCATTGAGTGGT+TGG | + | chr8.3:37248468-37248487 | MS.gene69672:intron | 45.0% | |
| TCGAGTGCCAATTGTGGAAA+TGG | + | chr8.3:37249480-37249499 | MS.gene69672:CDS | 45.0% | |
| TGTAGTTCGAGTGCCAATTG+TGG | + | chr8.3:37249474-37249493 | MS.gene69672:CDS | 45.0% | |
| TTCCACTAGAAAGACACGGA+TGG | + | chr8.3:37250047-37250066 | MS.gene69672:CDS | 45.0% | |
| TTTGTAGTGTGCTCTTCCCA+CGG | - | chr8.3:37249948-37249967 | None:intergenic | 45.0% | |
| ! | ATTATGTGTGTCGGTGGTGT+CGG | - | chr8.3:37248748-37248767 | None:intergenic | 45.0% |
| ! | CTTTAGAAGTTGAGGACCGT+GGG | + | chr8.3:37249929-37249948 | MS.gene69672:CDS | 45.0% |
| !! | GGTCAAGGCTTTAGAAGTTG+AGG | + | chr8.3:37249921-37249940 | MS.gene69672:CDS | 45.0% |
| !! | AAATATTAAAAGATTATATT+AGG | - | chr8.3:37250165-37250184 | None:intergenic | 5.0% |
| !! | TAATTAATAAAATTCAATTA+AGG | - | chr8.3:37250739-37250758 | None:intergenic | 5.0% |
| AATATCCTGCGCAGTTGCCT+GGG | - | chr8.3:37251085-37251104 | None:intergenic | 50.0% | |
| ATCGGTGAGAGGTAGGTTTC+TGG | - | chr8.3:37250007-37250026 | None:intergenic | 50.0% | |
| CACTAGAAAGACACGGATGG+AGG | + | chr8.3:37250050-37250069 | MS.gene69672:CDS | 50.0% | |
| CTCCATCCGTGTCTTTCTAG+TGG | - | chr8.3:37250052-37250071 | None:intergenic | 50.0% | |
| GATCAAGATCGGTGAGAGGT+AGG | - | chr8.3:37250014-37250033 | None:intergenic | 50.0% | |
| GATCTACAGTGTCCATGCAG+AGG | + | chr8.3:37248905-37248924 | MS.gene69672:intron | 50.0% | |
| TGTCTGAGTTCGTGCTTGAC+AGG | + | chr8.3:37248414-37248433 | MS.gene69672:intron | 50.0% | |
| TTGTGCTGTGAGCAGAAGCA+AGG | + | chr8.3:37250239-37250258 | MS.gene69672:CDS | 50.0% | |
| !! | GCTTTAGAAGTTGAGGACCG+TGG | + | chr8.3:37249928-37249947 | MS.gene69672:CDS | 50.0% |
| GAATATCCTGCGCAGTTGCC+TGG | - | chr8.3:37251086-37251105 | None:intergenic | 55.0% | |
| GAGTGGTTGGGATGTTGCTG+TGG | + | chr8.3:37248481-37248500 | MS.gene69672:CDS | 55.0% | |
| TGGTTGGGATGTTGCTGTGG+TGG | + | chr8.3:37248484-37248503 | MS.gene69672:CDS | 55.0% | |
| TTGGGATGTTGCTGTGGTGG+TGG | + | chr8.3:37248487-37248506 | MS.gene69672:CDS | 55.0% | |
| TTTGTCCCAGGCAACTGCGC+AGG | + | chr8.3:37251077-37251096 | MS.gene69672:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 37248198 | 37251149 | 37248198 | ID=MS.gene69672 |
| chr8.3 | mRNA | 37248198 | 37251149 | 37248198 | ID=MS.gene69672.t1;Parent=MS.gene69672 |
| chr8.3 | exon | 37248198 | 37248286 | 37248198 | ID=MS.gene69672.t1.exon1;Parent=MS.gene69672.t1 |
| chr8.3 | CDS | 37248198 | 37248286 | 37248198 | ID=cds.MS.gene69672.t1;Parent=MS.gene69672.t1 |
| chr8.3 | exon | 37248474 | 37248659 | 37248474 | ID=MS.gene69672.t1.exon2;Parent=MS.gene69672.t1 |
| chr8.3 | CDS | 37248474 | 37248659 | 37248474 | ID=cds.MS.gene69672.t1;Parent=MS.gene69672.t1 |
| chr8.3 | exon | 37248914 | 37248965 | 37248914 | ID=MS.gene69672.t1.exon3;Parent=MS.gene69672.t1 |
| chr8.3 | CDS | 37248914 | 37248965 | 37248914 | ID=cds.MS.gene69672.t1;Parent=MS.gene69672.t1 |
| chr8.3 | exon | 37249058 | 37249126 | 37249058 | ID=MS.gene69672.t1.exon4;Parent=MS.gene69672.t1 |
| chr8.3 | CDS | 37249058 | 37249126 | 37249058 | ID=cds.MS.gene69672.t1;Parent=MS.gene69672.t1 |
| chr8.3 | exon | 37249222 | 37249641 | 37249222 | ID=MS.gene69672.t1.exon5;Parent=MS.gene69672.t1 |
| chr8.3 | CDS | 37249222 | 37249641 | 37249222 | ID=cds.MS.gene69672.t1;Parent=MS.gene69672.t1 |
| chr8.3 | exon | 37249865 | 37250071 | 37249865 | ID=MS.gene69672.t1.exon6;Parent=MS.gene69672.t1 |
| chr8.3 | CDS | 37249865 | 37250071 | 37249865 | ID=cds.MS.gene69672.t1;Parent=MS.gene69672.t1 |
| chr8.3 | exon | 37250191 | 37250367 | 37250191 | ID=MS.gene69672.t1.exon7;Parent=MS.gene69672.t1 |
| chr8.3 | CDS | 37250191 | 37250367 | 37250191 | ID=cds.MS.gene69672.t1;Parent=MS.gene69672.t1 |
| chr8.3 | exon | 37251087 | 37251149 | 37251087 | ID=MS.gene69672.t1.exon8;Parent=MS.gene69672.t1 |
| chr8.3 | CDS | 37251087 | 37251149 | 37251087 | ID=cds.MS.gene69672.t1;Parent=MS.gene69672.t1 |
| Gene Sequence |
| Protein sequence |
