AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene69707

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69707.t1 MTR_3g056010 85.185 216 12 1 1 196 82 297 4.19e-133 375
MS.gene69707.t1 MTR_3g056025 85.116 215 12 1 1 195 82 296 1.17e-132 374
MS.gene69707.t1 MTR_7g029020 80.465 215 22 1 1 195 82 296 2.93e-124 353
MS.gene69707.t1 MTR_3g099940 78.873 213 25 1 1 193 83 295 5.30e-121 344
MS.gene69707.t1 MTR_5g094390 72.906 203 35 1 1 183 83 285 1.92e-108 313
MS.gene69707.t1 MTR_5g097530 66.190 210 51 1 1 190 79 288 1.20e-102 298
MS.gene69707.t1 MTR_0283s0050 66.489 188 43 1 1 168 79 266 1.17e-91 269
MS.gene69707.t1 MTR_7g114680 54.976 211 72 3 1 189 66 275 1.89e-71 229
MS.gene69707.t1 MTR_7g114680 54.976 211 72 3 1 189 80 289 2.49e-71 229
MS.gene69707.t1 MTR_3g076650 58.621 203 64 1 1 183 82 284 4.99e-71 226
MS.gene69707.t1 MTR_5g075220 52.217 203 77 1 1 183 83 285 7.05e-70 223
MS.gene69707.t1 MTR_3g095680 53.431 204 74 2 1 184 89 291 4.15e-69 222
MS.gene69707.t1 MTR_1g103850 55.924 211 69 4 1 189 80 288 4.83e-69 223
MS.gene69707.t1 MTR_3g095680 53.431 204 74 2 1 184 121 323 9.28e-69 222
MS.gene69707.t1 MTR_1g081330 54.502 211 73 3 1 189 80 289 1.16e-68 223
MS.gene69707.t1 MTR_8g093090 51.010 198 76 2 5 182 11 207 4.14e-67 214
MS.gene69707.t1 MTR_7g072860 51.196 209 82 2 1 189 84 292 6.58e-67 215
MS.gene69707.t1 MTR_7g072640 51.196 209 82 2 1 189 84 292 6.58e-67 215
MS.gene69707.t1 MTR_1g081330 54.634 205 70 3 7 189 1 204 6.67e-67 216
MS.gene69707.t1 MTR_8g093090 51.010 198 76 2 5 182 93 289 2.96e-66 214
MS.gene69707.t1 MTR_8g093090 51.010 198 76 2 5 182 111 307 4.22e-66 214
MS.gene69707.t1 MTR_8g027265 56.650 203 67 2 1 183 94 295 1.84e-65 213
MS.gene69707.t1 MTR_6g016260 55.172 203 71 1 1 183 62 264 3.16e-65 210
MS.gene69707.t1 MTR_3g080960 54.187 203 72 2 1 183 76 277 3.12e-62 203
MS.gene69707.t1 MTR_4g028830 53.659 205 75 1 5 189 84 288 3.36e-61 201
MS.gene69707.t1 MTR_5g094390 82.955 88 15 0 1 88 83 170 3.54e-50 162
MS.gene69707.t1 MTR_3g095680 53.741 147 47 2 58 184 2 147 4.92e-46 158
MS.gene69707.t1 MTR_8g093090 50.345 145 51 2 58 182 2 145 1.91e-44 154
MS.gene69707.t1 MTR_3g056013 90.625 64 6 0 133 196 18 81 3.85e-36 121
MS.gene69707.t1 MTR_5g049520 68.182 66 21 0 1 66 98 163 3.50e-26 99.0
MS.gene69707.t1 MTR_0068s0070 72.727 55 15 0 12 66 65 119 2.75e-23 90.1
MS.gene69707.t1 MTR_2g040510 32.547 212 105 8 17 192 137 346 9.59e-20 85.9
MS.gene69707.t1 MTR_1g100250 29.902 204 116 8 1 182 468 666 3.02e-19 85.5
MS.gene69707.t1 MTR_3g062420 47.674 86 30 1 61 131 1953 2038 9.94e-19 84.0
MS.gene69707.t1 MTR_4g094415 31.343 201 109 9 5 183 224 417 1.03e-18 83.6
MS.gene69707.t1 MTR_1g105290 29.717 212 110 8 1 182 115 317 7.27e-18 81.3
MS.gene69707.t1 MTR_1g105290 29.717 212 110 8 1 182 115 317 8.23e-18 80.9
MS.gene69707.t1 MTR_1g105290 29.717 212 110 8 1 182 115 317 8.43e-18 80.9
MS.gene69707.t1 MTR_7g095450 32.222 180 89 7 28 181 84 256 1.77e-17 80.1
MS.gene69707.t1 MTR_5g059880 31.959 194 97 9 15 182 260 444 2.97e-17 79.3
MS.gene69707.t1 MTR_3g095620 30.539 167 107 5 5 168 83 243 5.83e-17 77.4
MS.gene69707.t1 MTR_3g073250 30.846 201 110 9 5 183 330 523 7.25e-17 78.2
MS.gene69707.t1 MTR_1g071480 32.402 179 90 9 28 181 84 256 1.45e-16 77.4
MS.gene69707.t1 MTR_5g059940 30.052 193 108 8 12 182 190 377 4.02e-16 75.9
MS.gene69707.t1 MTR_1g081000 29.469 207 112 8 1 181 58 256 1.22e-15 74.7
MS.gene69707.t1 MTR_1g081000 29.469 207 112 8 1 181 58 256 1.22e-15 74.7
MS.gene69707.t1 MTR_5g060350 30.964 197 101 9 12 182 386 573 1.84e-15 74.3
MS.gene69707.t1 MTR_5g049560 43.333 90 22 2 1 90 202 262 1.89e-15 72.8
MS.gene69707.t1 MTR_4g094415 36.154 130 73 6 5 131 224 346 2.36e-15 73.6
MS.gene69707.t1 MTR_5g059910 31.053 190 104 8 15 182 199 383 2.89e-15 73.6
MS.gene69707.t1 MTR_5g010730 30.055 183 98 7 23 179 495 673 2.91e-15 73.6
MS.gene69707.t1 MTR_5g010730 30.055 183 98 7 23 179 550 728 3.75e-15 73.6
MS.gene69707.t1 MTR_8g093730 27.083 192 107 7 20 185 373 557 3.85e-15 73.2
MS.gene69707.t1 MTR_7g113490 28.365 208 118 7 1 182 128 330 5.55e-15 72.8
MS.gene69707.t1 MTR_4g051648 29.570 186 98 7 24 183 84 262 8.42e-15 72.4
MS.gene69707.t1 MTR_0189s0010 28.718 195 102 9 22 187 98 284 1.19e-14 71.2
MS.gene69707.t1 MTR_7g092360 29.268 205 119 9 1 183 70 270 1.58e-14 71.6
MS.gene69707.t1 MTR_0154s0020 28.351 194 102 9 22 186 78 263 1.62e-14 70.9
MS.gene69707.t1 MTR_1g052115 28.283 198 116 8 6 181 63 256 2.02e-14 71.2
MS.gene69707.t1 MTR_5g017890 25.561 223 122 10 1 190 429 640 1.26e-13 68.9
MS.gene69707.t1 MTR_5g017140 29.442 197 112 9 15 187 73 266 1.90e-13 67.8
MS.gene69707.t1 MTR_3g073250 31.293 147 91 6 5 148 343 482 3.48e-13 67.4
MS.gene69707.t1 MTR_0154s0040 27.692 195 104 9 22 187 78 264 4.68e-13 66.6
MS.gene69707.t1 MTR_4g082325 33.333 138 83 4 17 146 210 346 5.11e-13 67.0
MS.gene69707.t1 MTR_3g101210 29.787 188 102 8 26 186 387 571 5.70e-13 67.0
MS.gene69707.t1 MTR_3g101210 29.787 188 102 8 26 186 387 571 6.42e-13 67.0
MS.gene69707.t1 MTR_1g101630 26.389 144 100 3 5 146 101 240 6.67e-13 66.6
MS.gene69707.t1 MTR_6g071280 29.648 199 107 8 15 183 123 318 9.23e-13 65.9
MS.gene69707.t1 MTR_1g016300 32.544 169 100 8 21 180 733 896 1.16e-12 66.2
MS.gene69707.t1 MTR_1g052115 30.263 152 83 6 50 181 20 168 1.17e-12 66.2
MS.gene69707.t1 MTR_1g050690 30.968 155 100 6 21 169 487 640 1.45e-12 65.9
MS.gene69707.t1 MTR_8g024100 28.276 145 97 4 5 146 73 213 1.84e-12 65.5
MS.gene69707.t1 MTR_6g005210 25.000 212 134 7 4 192 140 349 1.97e-12 65.5
MS.gene69707.t1 MTR_4g122160 33.607 122 71 5 55 170 565 682 2.95e-12 65.1
MS.gene69707.t1 MTR_5g023150 26.374 182 107 8 21 179 268 445 3.20e-12 64.7
MS.gene69707.t1 MTR_4g049730 31.288 163 84 9 46 186 96 252 3.39e-12 64.7
MS.gene69707.t1 MTR_5g023150 26.374 182 107 8 21 179 365 542 3.69e-12 64.7
MS.gene69707.t1 MTR_5g066490 29.245 212 109 12 5 181 702 907 3.81e-12 64.7
MS.gene69707.t1 MTR_2g078740 30.921 152 80 6 53 182 118 266 3.87e-12 64.7
MS.gene69707.t1 MTR_2g078740 30.921 152 80 6 53 182 118 266 3.91e-12 64.7
MS.gene69707.t1 MTR_2g078740 30.921 152 80 6 53 182 118 266 4.02e-12 64.7
MS.gene69707.t1 MTR_3g114900 28.022 182 104 8 21 179 340 517 5.30e-12 64.3
MS.gene69707.t1 MTR_3g100090 32.184 174 106 7 21 185 723 893 6.87e-12 63.9
MS.gene69707.t1 MTR_7g091890 29.167 144 96 4 5 146 118 257 9.74e-12 63.2
MS.gene69707.t1 MTR_4g005730 31.250 160 78 7 53 183 129 285 1.08e-11 63.2
MS.gene69707.t1 MTR_4g005730 31.250 160 78 7 53 183 129 285 1.09e-11 63.2
MS.gene69707.t1 MTR_4g005730 31.250 160 78 7 53 183 129 285 1.14e-11 63.2
MS.gene69707.t1 MTR_1g069470 29.688 192 112 11 1 181 757 936 1.14e-11 63.2
MS.gene69707.t1 MTR_2g088020 27.411 197 113 8 11 184 68 257 1.20e-11 62.8
MS.gene69707.t1 MTR_7g091890 29.167 144 96 4 5 146 118 257 1.37e-11 62.8
MS.gene69707.t1 MTR_1g081790 32.051 156 97 6 21 170 759 911 1.52e-11 62.8
MS.gene69707.t1 MTR_1g081790 32.051 156 97 6 21 170 759 911 1.53e-11 62.8
MS.gene69707.t1 MTR_7g098610 29.167 192 114 11 1 181 766 946 1.64e-11 62.8
MS.gene69707.t1 MTR_4g066660 29.167 144 96 4 5 146 132 271 2.62e-11 62.0
MS.gene69707.t1 MTR_5g010030 28.082 146 98 4 1 142 95 237 3.87e-11 61.2
MS.gene69707.t1 MTR_1g099110 26.396 197 117 9 3 177 320 510 4.10e-11 61.6
MS.gene69707.t1 MTR_1g066950 31.757 148 90 7 4 143 652 796 4.13e-11 61.6
MS.gene69707.t1 MTR_1g099110 26.396 197 117 9 3 177 337 527 4.41e-11 61.6
MS.gene69707.t1 MTR_8g100085 32.031 128 79 5 23 146 209 332 4.74e-11 61.2
MS.gene69707.t1 MTR_2g017825 25.899 139 98 4 21 155 219 356 5.79e-11 60.8
MS.gene69707.t1 MTR_2g017825 27.338 139 96 5 21 155 223 360 6.27e-11 60.8
MS.gene69707.t1 MTR_5g075100 25.962 208 122 10 1 183 78 278 7.61e-11 60.8
MS.gene69707.t1 MTR_4g105770 25.234 214 130 9 1 189 114 322 8.20e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69707.t1 AT5G55560 69.903 206 42 1 1 186 87 292 3.71e-106 307
MS.gene69707.t1 AT3G48260 57.635 203 66 1 1 183 78 280 2.51e-77 240
MS.gene69707.t1 AT3G48260 59.783 184 54 1 20 183 2 185 9.39e-73 226
MS.gene69707.t1 AT3G04910 55.450 211 71 3 1 189 57 266 1.19e-70 227
MS.gene69707.t1 AT3G04910 55.450 211 71 3 1 189 80 289 1.74e-70 227
MS.gene69707.t1 AT1G49160 52.941 204 75 2 1 184 66 268 3.30e-68 217
MS.gene69707.t1 AT1G49160 52.941 204 75 2 1 184 84 286 6.36e-68 217
MS.gene69707.t1 AT5G28080 52.709 203 75 2 1 183 44 245 7.66e-68 214
MS.gene69707.t1 AT1G49160 52.941 204 75 2 1 184 131 333 8.65e-68 215
MS.gene69707.t1 AT3G18750 52.709 203 75 2 1 183 66 267 1.50e-67 216
MS.gene69707.t1 AT5G28080 52.709 203 75 2 1 183 81 282 1.54e-67 214
MS.gene69707.t1 AT3G18750 52.709 203 75 2 1 183 84 285 1.70e-67 216
MS.gene69707.t1 AT3G18750 52.709 203 75 2 1 183 84 285 1.70e-67 216
MS.gene69707.t1 AT3G18750 52.709 203 75 2 1 183 84 285 1.70e-67 216
MS.gene69707.t1 AT1G49160 52.941 204 75 2 1 184 131 333 2.86e-67 216
MS.gene69707.t1 AT5G58350 50.739 203 80 1 1 183 75 277 6.93e-67 214
MS.gene69707.t1 AT5G28080 53.299 197 71 2 7 183 1 196 9.30e-67 210
MS.gene69707.t1 AT5G28080 53.299 197 71 2 7 183 1 196 9.30e-67 210
MS.gene69707.t1 AT5G28080 53.299 197 71 2 7 183 1 196 9.30e-67 210
MS.gene69707.t1 AT5G28080 53.299 197 71 2 7 183 1 196 9.30e-67 210
MS.gene69707.t1 AT5G28080 53.299 197 71 2 7 183 1 196 9.30e-67 210
MS.gene69707.t1 AT3G51630 51.887 212 80 2 1 192 81 290 2.05e-66 213
MS.gene69707.t1 AT3G51630 51.887 212 80 2 1 192 81 290 2.05e-66 213
MS.gene69707.t1 AT3G22420 50.244 205 81 2 1 185 80 283 2.18e-65 211
MS.gene69707.t1 AT3G22420 50.244 205 81 2 1 185 80 283 3.05e-65 211
MS.gene69707.t1 AT3G22420 50.244 205 81 2 1 185 151 354 4.97e-65 211
MS.gene69707.t1 AT3G22420 50.244 205 81 2 1 185 151 354 9.05e-65 211
MS.gene69707.t1 AT5G41990 53.695 203 73 2 1 183 85 286 6.50e-63 204
MS.gene69707.t1 AT3G22420 43.644 236 82 2 1 185 80 315 2.79e-60 198
MS.gene69707.t1 AT3G22420 43.644 236 82 2 1 185 80 315 4.47e-60 198
MS.gene69707.t1 AT1G64630 53.769 199 71 2 5 183 76 273 6.66e-60 195
MS.gene69707.t1 AT3G04910 57.927 164 46 3 48 189 1 163 1.55e-53 179
MS.gene69707.t1 AT1G49160 52.500 160 55 2 45 184 1 159 2.88e-50 168
MS.gene69707.t1 AT1G49160 52.500 160 55 2 45 184 1 159 2.88e-50 168
MS.gene69707.t1 AT1G49160 52.500 160 55 2 45 184 1 159 2.88e-50 168
MS.gene69707.t1 AT3G18750 41.530 183 59 1 1 183 84 218 6.04e-39 139
MS.gene69707.t1 AT3G18750 41.530 183 59 1 1 183 84 218 6.04e-39 139
MS.gene69707.t1 AT4G08500 34.555 191 95 9 16 182 402 586 1.69e-20 89.0
MS.gene69707.t1 AT3G20860 30.303 198 111 8 6 181 63 255 1.54e-18 82.8
MS.gene69707.t1 AT1G09000 29.469 207 116 8 1 182 129 330 4.70e-18 81.6
MS.gene69707.t1 AT3G04810 31.868 182 91 7 28 183 84 258 1.87e-17 80.1
MS.gene69707.t1 AT3G04810 31.868 182 91 7 28 183 84 258 1.87e-17 80.1
MS.gene69707.t1 AT3G04810 31.868 182 91 7 28 183 84 258 1.87e-17 80.1
MS.gene69707.t1 AT1G09000 29.327 208 115 8 1 182 129 330 4.25e-17 79.0
MS.gene69707.t1 AT1G63700 26.442 208 126 7 1 186 457 659 4.63e-17 79.0
MS.gene69707.t1 AT1G63700 26.442 208 126 7 1 186 457 659 4.63e-17 79.0
MS.gene69707.t1 AT4G12020 33.163 196 92 10 16 184 1620 1803 4.98e-17 79.0
MS.gene69707.t1 AT4G12020 33.163 196 92 10 16 184 1687 1870 5.29e-17 79.0
MS.gene69707.t1 AT4G12020 33.163 196 92 10 16 184 1695 1878 5.40e-17 79.0
MS.gene69707.t1 AT4G08480 33.854 192 97 9 15 182 569 754 6.75e-17 78.6
MS.gene69707.t1 AT5G28290 31.319 182 92 7 28 183 84 258 7.51e-17 78.2
MS.gene69707.t1 AT5G28290 31.319 182 92 7 28 183 84 258 8.50e-17 78.2
MS.gene69707.t1 AT5G28290 31.319 182 92 7 28 183 84 258 8.50e-17 78.2
MS.gene69707.t1 AT4G26070 31.579 209 111 8 9 187 125 331 1.48e-16 77.0
MS.gene69707.t1 AT4G26070 31.905 210 108 9 9 185 113 320 1.48e-16 76.6
MS.gene69707.t1 AT4G26070 31.579 209 111 8 9 187 126 332 2.15e-16 76.3
MS.gene69707.t1 AT4G26070 31.579 209 111 8 9 187 126 332 2.15e-16 76.3
MS.gene69707.t1 AT1G54510 31.667 180 90 7 28 181 84 256 7.40e-16 75.5
MS.gene69707.t1 AT1G54510 31.667 180 90 7 28 181 84 256 7.40e-16 75.5
MS.gene69707.t1 AT1G54510 31.667 180 90 7 28 181 84 256 7.40e-16 75.5
MS.gene69707.t1 AT1G54510 31.667 180 90 7 28 181 84 256 7.40e-16 75.5
MS.gene69707.t1 AT1G54960 29.384 211 111 9 1 182 128 329 7.74e-16 75.5
MS.gene69707.t1 AT1G54960 29.384 211 111 9 1 182 128 329 7.74e-16 75.5
MS.gene69707.t1 AT4G12020 32.418 182 96 10 16 184 1687 1854 7.84e-16 75.5
MS.gene69707.t1 AT4G12020 32.418 182 96 10 16 184 1695 1862 8.14e-16 75.5
MS.gene69707.t1 AT1G49180 31.285 179 114 5 5 180 65 237 1.66e-15 73.9
MS.gene69707.t1 AT1G49180 31.285 179 114 5 5 180 65 237 1.87e-15 73.9
MS.gene69707.t1 AT4G26890 31.373 204 108 8 14 193 68 263 5.03e-15 72.8
MS.gene69707.t1 AT3G63280 29.444 180 94 7 28 181 138 310 1.88e-14 71.2
MS.gene69707.t1 AT5G49470 33.333 150 71 7 55 179 309 454 2.11e-14 71.2
MS.gene69707.t1 AT3G44200 31.868 182 99 8 24 183 84 262 2.35e-14 71.2
MS.gene69707.t1 AT3G44200 31.868 182 99 8 24 183 84 262 2.35e-14 71.2
MS.gene69707.t1 AT1G67890 32.051 156 96 5 21 170 429 580 3.74e-14 70.5
MS.gene69707.t1 AT1G12680 26.241 141 99 3 6 146 161 296 4.19e-14 70.1
MS.gene69707.t1 AT1G67890 32.051 156 96 5 21 170 557 708 4.30e-14 70.5
MS.gene69707.t1 AT1G67890 32.051 156 96 5 21 170 557 708 4.30e-14 70.5
MS.gene69707.t1 AT5G49470 32.680 153 74 7 52 179 466 614 4.54e-14 70.1
MS.gene69707.t1 AT5G49470 32.680 153 74 7 52 179 567 715 4.69e-14 70.1
MS.gene69707.t1 AT5G49470 32.680 153 74 7 52 179 593 741 5.00e-14 70.1
MS.gene69707.t1 AT1G67890 32.051 156 96 5 21 170 557 708 8.20e-14 69.7
MS.gene69707.t1 AT1G69220 27.404 208 114 10 5 184 279 477 9.38e-14 69.3
MS.gene69707.t1 AT5G57610 28.713 202 111 9 5 177 843 1040 9.50e-14 69.3
MS.gene69707.t1 AT3G06630 36.885 122 67 5 55 170 539 656 9.64e-14 69.3
MS.gene69707.t1 AT5G49470 33.333 147 69 7 58 179 660 802 9.79e-14 69.3
MS.gene69707.t1 AT4G23050 31.818 198 93 9 19 178 523 716 1.01e-13 69.3
MS.gene69707.t1 AT4G23050 31.818 198 93 9 19 178 524 717 1.04e-13 69.3
MS.gene69707.t1 AT1G69220 27.404 208 114 10 5 184 306 504 1.06e-13 69.3
MS.gene69707.t1 AT3G06030 28.019 207 119 8 1 182 128 329 1.09e-13 69.3
MS.gene69707.t1 AT3G06630 36.885 122 67 5 55 170 539 656 1.13e-13 69.3
MS.gene69707.t1 AT2G42640 29.949 197 113 9 1 178 580 770 1.26e-13 68.9
MS.gene69707.t1 AT3G63280 29.444 180 94 7 28 181 84 256 1.33e-13 68.9
MS.gene69707.t1 AT3G63280 29.444 180 94 7 28 181 84 256 1.33e-13 68.9
MS.gene69707.t1 AT3G63280 29.444 180 94 7 28 181 84 256 1.33e-13 68.9
MS.gene69707.t1 AT2G31500 30.556 144 94 4 5 146 126 265 1.39e-13 68.9
MS.gene69707.t1 AT3G45420 31.126 151 96 5 1 146 401 548 1.58e-13 68.6
MS.gene69707.t1 AT2G42640 29.949 197 113 9 1 178 542 732 1.62e-13 68.6
MS.gene69707.t1 AT3G06620 36.885 122 67 5 55 170 599 716 1.90e-13 68.6
MS.gene69707.t1 AT5G28080 43.820 89 30 1 115 183 1 89 1.98e-13 67.8
MS.gene69707.t1 AT1G62400 33.071 127 79 4 23 146 162 285 2.59e-13 67.8
MS.gene69707.t1 AT4G26070 34.752 141 87 5 9 146 126 264 2.60e-13 67.4
MS.gene69707.t1 AT3G53930 28.205 195 112 7 21 189 92 284 5.27e-13 67.4
MS.gene69707.t1 AT3G53930 28.205 195 112 7 21 189 92 284 5.27e-13 67.4
MS.gene69707.t1 AT3G58760 30.921 152 92 7 21 162 297 445 7.31e-13 66.6
MS.gene69707.t1 AT3G58760 30.921 152 92 7 21 162 297 445 7.31e-13 66.6
MS.gene69707.t1 AT3G58760 30.921 152 92 7 21 162 234 382 7.55e-13 66.6
MS.gene69707.t1 AT1G14000 28.272 191 108 6 17 179 229 418 7.66e-13 66.6
MS.gene69707.t1 AT2G37840 26.977 215 127 8 1 189 66 276 7.76e-13 66.6
MS.gene69707.t1 AT1G18350 27.320 194 106 8 21 185 118 305 1.28e-12 65.5
MS.gene69707.t1 AT2G33170 30.256 195 120 9 3 189 879 1065 1.68e-12 65.9
MS.gene69707.t1 AT2G33170 30.256 195 120 9 3 189 879 1065 1.68e-12 65.9
MS.gene69707.t1 AT2G17700 27.869 183 105 8 20 179 355 533 2.09e-12 65.5
MS.gene69707.t1 AT1G72180 32.450 151 90 7 4 146 741 887 2.81e-12 65.1
MS.gene69707.t1 AT1G79570 29.353 201 111 9 5 177 1026 1223 3.74e-12 64.7
MS.gene69707.t1 AT1G79570 29.353 201 111 9 5 177 1026 1223 3.74e-12 64.7
MS.gene69707.t1 AT1G18160 31.694 183 97 9 21 178 785 964 5.37e-12 64.3
MS.gene69707.t1 AT3G06630 43.182 88 43 4 55 136 539 625 6.65e-12 63.9
MS.gene69707.t1 AT3G06630 43.182 88 43 4 55 136 539 625 6.65e-12 63.9
MS.gene69707.t1 AT3G06630 43.182 88 43 4 55 136 539 625 6.65e-12 63.9
MS.gene69707.t1 AT3G06630 43.182 88 43 4 55 136 455 541 7.82e-12 63.5
MS.gene69707.t1 AT5G49760 28.488 172 105 7 3 163 684 848 7.88e-12 63.9
MS.gene69707.t1 AT3G46920 26.442 208 114 9 5 180 868 1068 8.90e-12 63.5
MS.gene69707.t1 AT3G46920 26.442 208 114 9 5 180 934 1134 1.08e-11 63.5
MS.gene69707.t1 AT5G67080 27.273 198 111 8 22 189 82 276 1.43e-11 62.8
MS.gene69707.t1 AT3G61960 28.966 145 96 4 5 146 68 208 1.45e-11 62.8
MS.gene69707.t1 AT3G57530 28.276 145 96 4 5 146 123 262 1.54e-11 62.8
MS.gene69707.t1 AT3G61960 28.966 145 96 4 5 146 68 208 1.57e-11 62.8
MS.gene69707.t1 AT5G19450 29.861 144 95 4 5 146 117 256 1.92e-11 62.4
MS.gene69707.t1 AT5G19450 29.861 144 95 4 5 146 117 256 1.92e-11 62.4
MS.gene69707.t1 AT4G12020 39.252 107 50 6 16 119 1687 1781 2.00e-11 62.8
MS.gene69707.t1 AT4G12020 39.252 107 50 6 16 119 1695 1789 2.00e-11 62.8
MS.gene69707.t1 AT4G12020 39.252 107 50 6 16 119 1695 1789 2.00e-11 62.8
MS.gene69707.t1 AT1G12580 25.000 144 102 3 5 146 104 243 2.31e-11 62.4
MS.gene69707.t1 AT3G57530 28.276 145 96 4 5 146 123 262 2.61e-11 62.0
MS.gene69707.t1 AT1G53165 28.846 156 86 6 52 185 117 269 3.16e-11 62.0
MS.gene69707.t1 AT1G53165 28.846 156 86 6 52 185 117 269 3.17e-11 62.0
MS.gene69707.t1 AT1G53165 28.846 156 86 6 52 185 117 269 3.73e-11 61.6
MS.gene69707.t1 AT1G78530 28.188 149 98 6 3 146 128 272 7.63e-11 60.1
MS.gene69707.t1 AT5G40440 23.721 215 135 7 3 192 56 266 7.73e-11 60.8
MS.gene69707.t1 AT1G18160 35.714 126 69 6 21 137 785 907 8.19e-11 60.8
MS.gene69707.t1 AT1G78530 28.188 149 98 6 3 146 128 272 8.27e-11 60.5
MS.gene69707.t1 AT2G24360 25.967 181 106 8 23 179 206 382 9.17e-11 60.5
MS.gene69707.t1 AT5G40440 23.721 215 135 7 3 192 138 348 9.56e-11 60.5
MS.gene69707.t1 AT5G40440 23.721 215 135 7 3 192 138 348 9.56e-11 60.5

Find 38 sgRNAs with CRISPR-Local

Find 50 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCAGCGCATTCAGTTCT+AGG 0.181449 3.4:-52794122 MS.gene69707:CDS
TCTAGGCACACCGGAATTTA+TGG 0.201363 3.4:-52794105 MS.gene69707:CDS
GAAGTGGTCTAAGCAAATTT+TGG 0.283616 3.4:-52794372 MS.gene69707:CDS
TCATTGCACTTTACAATGTT+TGG 0.285058 3.4:-52794502 MS.gene69707:CDS
AATGTATATTAGGTTAAGAT+TGG 0.380565 3.4:-52794179 MS.gene69707:intron
TGGTAGACATATACCTCATT+TGG 0.404816 3.4:-52794049 MS.gene69707:CDS
CTTAGGTTTGGCAGCAATTG+TGG 0.415298 3.4:-52794153 MS.gene69707:CDS
GTGGGAATTTGAGGGAGTAT+AGG 0.417911 3.4:-52794430 MS.gene69707:CDS
TTACAATGTTTGGAGGGATA+AGG 0.426660 3.4:-52794492 MS.gene69707:CDS
ATATACAAGAAGGTGACTTC+AGG 0.446476 3.4:-52793962 MS.gene69707:CDS
TAGGTTAAGATTGGTGACTT+AGG 0.448927 3.4:-52794170 MS.gene69707:CDS
TAAGATTGGTGACTTAGGTT+TGG 0.458074 3.4:-52794165 MS.gene69707:CDS
CTATTAACGCTTTGAAGAAG+TGG 0.458497 3.4:-52794388 MS.gene69707:CDS
AGCTCTGGTGCCATAAATTC+CGG 0.461898 3.4:+52794095 None:intergenic
TAATCCTCTTCATATAGCTC+TGG 0.477445 3.4:+52794080 None:intergenic
TGAAGAGGATTACACAGAAA+TGG 0.479001 3.4:-52794069 MS.gene69707:CDS
TCAGCAGAAGGTCTATCCCT+TGG 0.484549 3.4:+52793866 None:intergenic
TTGTACAAGTGGGAATTTGA+GGG 0.489551 3.4:-52794438 MS.gene69707:CDS
TTTGTACAAGTGGGAATTTG+AGG 0.501885 3.4:-52794439 MS.gene69707:CDS
TTAGGTTTGGCAGCAATTGT+GGG 0.502201 3.4:-52794152 MS.gene69707:CDS
ATCACCGAGGTTTGTACAAG+TGG 0.519419 3.4:-52794449 MS.gene69707:CDS
TTTATCTTGTTCAAGGATTG+CGG 0.530284 3.4:+52793932 None:intergenic
TTCTGCTGAGGAATTGCTAA+AGG 0.536575 3.4:-52793852 MS.gene69707:CDS
TTGCACTTTACAATGTTTGG+AGG 0.543593 3.4:-52794499 MS.gene69707:CDS
TGCACTTTACAATGTTTGGA+GGG 0.546438 3.4:-52794498 MS.gene69707:CDS
TAATACTAACATTCCAAATG+AGG 0.550565 3.4:+52794036 None:intergenic
TGTCAATGGAAATACTGGCC+AGG 0.553529 3.4:-52794279 MS.gene69707:intron
TTTAGCAATTCCTCAGCAGA+AGG 0.580675 3.4:+52793854 None:intergenic
AAAAGTGTCTCGCTCAACCA+AGG 0.600241 3.4:-52793883 MS.gene69707:CDS
TGTTGCAAAGATATACAAGA+AGG 0.609288 3.4:-52793972 MS.gene69707:intron
GGCACCAGAGCTATATGAAG+AGG 0.616021 3.4:-52794084 MS.gene69707:CDS
AGGTCTCTATGAATGATACA+AGG 0.636667 3.4:+52794320 None:intergenic
AAAGTGTCTCGCTCAACCAA+GGG 0.643106 3.4:-52793882 MS.gene69707:CDS
TCACCGAGGTTTGTACAAGT+GGG 0.644778 3.4:-52794448 MS.gene69707:CDS
ATTCCCACTTGTACAAACCT+CGG 0.651475 3.4:+52794445 None:intergenic
CACACTTAATTTCATCACCG+AGG 0.662122 3.4:-52794462 MS.gene69707:CDS
AAGGGATAGACCTTCTGCTG+AGG 0.674374 3.4:-52793864 MS.gene69707:CDS
GCATTCAGTTCTAGGCACAC+CGG 0.687251 3.4:-52794114 MS.gene69707:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTGTTTTAATGTATATT+AGG - chr3.4:52794128-52794147 MS.gene69707:CDS 10.0%
!! AATGTATATTAGGTTAAGAT+TGG - chr3.4:52794138-52794157 MS.gene69707:CDS 20.0%
! TAATACTAACATTCCAAATG+AGG + chr3.4:52794284-52794303 None:intergenic 25.0%
! TACTCTACATCATCAAAAAA+AGG + chr3.4:52794493-52794512 None:intergenic 25.0%
!! TACATCTTTTATCTTGTTCA+AGG + chr3.4:52794395-52794414 None:intergenic 25.0%
ACATCTTGAGATAAACAACA+TGG + chr3.4:52794094-52794113 None:intergenic 30.0%
ACATTGTCACATTCACTATA+TGG + chr3.4:52794328-52794347 None:intergenic 30.0%
TCATTGCACTTTACAATGTT+TGG - chr3.4:52793815-52793834 MS.gene69707:CDS 30.0%
TGAAACAGAAATAATGTACC+TGG + chr3.4:52794059-52794078 None:intergenic 30.0%
TGGAATGTTAGTATTAGAGA+TGG - chr3.4:52794288-52794307 MS.gene69707:CDS 30.0%
TGTTGCAAAGATATACAAGA+AGG - chr3.4:52794345-52794364 MS.gene69707:CDS 30.0%
TTTATCTTGTTCAAGGATTG+CGG + chr3.4:52794388-52794407 None:intergenic 30.0%
! GTTTTTGTCAATGGAAATAC+TGG - chr3.4:52794033-52794052 MS.gene69707:intron 30.0%
!! TGCAGTAATGTTTTTGTCAA+TGG - chr3.4:52794024-52794043 MS.gene69707:intron 30.0%
AGGTCTCTATGAATGATACA+AGG + chr3.4:52794000-52794019 None:intergenic 35.0%
ATATACAAGAAGGTGACTTC+AGG - chr3.4:52794355-52794374 MS.gene69707:CDS 35.0%
CAAAAACATTACTGCAGTTG+AGG + chr3.4:52794020-52794039 None:intergenic 35.0%
TAATCCTCTTCATATAGCTC+TGG + chr3.4:52794240-52794259 None:intergenic 35.0%
TGAAGAGGATTACACAGAAA+TGG - chr3.4:52794248-52794267 MS.gene69707:intron 35.0%
TGCACTTTACAATGTTTGGA+GGG - chr3.4:52793819-52793838 MS.gene69707:CDS 35.0%
TGGTAGACATATACCTCATT+TGG - chr3.4:52794268-52794287 MS.gene69707:intron 35.0%
TTACAATGTTTGGAGGGATA+AGG - chr3.4:52793825-52793844 MS.gene69707:CDS 35.0%
TTGCACTTTACAATGTTTGG+AGG - chr3.4:52793818-52793837 MS.gene69707:CDS 35.0%
TTGTACAAGTGGGAATTTGA+GGG - chr3.4:52793879-52793898 MS.gene69707:CDS 35.0%
TTTGTACAAGTGGGAATTTG+AGG - chr3.4:52793878-52793897 MS.gene69707:CDS 35.0%
! GAAGTGGTCTAAGCAAATTT+TGG - chr3.4:52793945-52793964 MS.gene69707:CDS 35.0%
! TAAGATTGGTGACTTAGGTT+TGG - chr3.4:52794152-52794171 MS.gene69707:CDS 35.0%
! TAGGTTAAGATTGGTGACTT+AGG - chr3.4:52794147-52794166 MS.gene69707:CDS 35.0%
! TGGTCTAAGCAAATTTTGGA+AGG - chr3.4:52793949-52793968 MS.gene69707:CDS 35.0%
!! CTATTAACGCTTTGAAGAAG+TGG - chr3.4:52793929-52793948 MS.gene69707:CDS 35.0%
!! GGTCTAAGCAAATTTTGGAA+GGG - chr3.4:52793950-52793969 MS.gene69707:CDS 35.0%
ATTCCCACTTGTACAAACCT+CGG + chr3.4:52793875-52793894 None:intergenic 40.0%
CACACTTAATTTCATCACCG+AGG - chr3.4:52793855-52793874 MS.gene69707:CDS 40.0%
TTAGGTTTGGCAGCAATTGT+GGG - chr3.4:52794165-52794184 MS.gene69707:CDS 40.0%
TTCTGCTGAGGAATTGCTAA+AGG - chr3.4:52794465-52794484 MS.gene69707:CDS 40.0%
TTTAGCAATTCCTCAGCAGA+AGG + chr3.4:52794466-52794485 None:intergenic 40.0%
ATCACCGAGGTTTGTACAAG+TGG - chr3.4:52793868-52793887 MS.gene69707:CDS 45.0%
CATTCAGCGCATTCAGTTCT+AGG - chr3.4:52794195-52794214 MS.gene69707:intron 45.0%
CTTAGGTTTGGCAGCAATTG+TGG - chr3.4:52794164-52794183 MS.gene69707:CDS 45.0%
TCACCGAGGTTTGTACAAGT+GGG - chr3.4:52793869-52793888 MS.gene69707:CDS 45.0%
TCTAGGCACACCGGAATTTA+TGG - chr3.4:52794212-52794231 MS.gene69707:intron 45.0%
TGTCAATGGAAATACTGGCC+AGG - chr3.4:52794038-52794057 MS.gene69707:intron 45.0%
! AAAGTGTCTCGCTCAACCAA+GGG - chr3.4:52794435-52794454 MS.gene69707:CDS 45.0%
! GTGGGAATTTGAGGGAGTAT+AGG - chr3.4:52793887-52793906 MS.gene69707:CDS 45.0%
!! AAAAGTGTCTCGCTCAACCA+AGG - chr3.4:52794434-52794453 MS.gene69707:CDS 45.0%
!! AGCTCTGGTGCCATAAATTC+CGG + chr3.4:52794225-52794244 None:intergenic 45.0%
AAGGGATAGACCTTCTGCTG+AGG - chr3.4:52794453-52794472 MS.gene69707:CDS 50.0%
GGCACCAGAGCTATATGAAG+AGG - chr3.4:52794233-52794252 MS.gene69707:intron 50.0%
TCAGCAGAAGGTCTATCCCT+TGG + chr3.4:52794454-52794473 None:intergenic 50.0%
!! GCATTCAGTTCTAGGCACAC+CGG - chr3.4:52794203-52794222 MS.gene69707:intron 50.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 52793799 52794540 52793799 ID=MS.gene69707
chr3.4 mRNA 52793799 52794540 52793799 ID=MS.gene69707.t1;Parent=MS.gene69707
chr3.4 exon 52794280 52794540 52794280 ID=MS.gene69707.t1.exon1;Parent=MS.gene69707.t1
chr3.4 CDS 52794280 52794540 52794280 ID=cds.MS.gene69707.t1;Parent=MS.gene69707.t1
chr3.4 exon 52794046 52794189 52794046 ID=MS.gene69707.t1.exon2;Parent=MS.gene69707.t1
chr3.4 CDS 52794046 52794189 52794046 ID=cds.MS.gene69707.t1;Parent=MS.gene69707.t1
chr3.4 exon 52793799 52793984 52793799 ID=MS.gene69707.t1.exon3;Parent=MS.gene69707.t1
chr3.4 CDS 52793799 52793984 52793799 ID=cds.MS.gene69707.t1;Parent=MS.gene69707.t1
Gene Sequence

>MS.gene69707

ATGACAAACAAAAACATCATTGCACTTTACAATGTTTGGAGGGATAAGGATCATAACACACTTAATTTCATCACCGAGGTTTGTACAAGTGGGAATTTGAGGGAGTATAGGAAGAAACATAAGCATGTTTCTATTAACGCTTTGAAGAAGTGGTCTAAGCAAATTTTGGAAGGGTTGAATTATTTACACGTGCATGATCCTTGTATCATTCATAGAGACCTCAACTGCAGTAATGTTTTTGTCAATGGAAATACTGGCCAGGTACATTATTTCTGTTTCATATTCTAATTTTCCATGTTGTTTATCTCAAGATGTCATTAGTACTAAATTATTTGTTTTAATGTATATTAGGTTAAGATTGGTGACTTAGGTTTGGCAGCAATTGTGGGAAAGAATCATTCAGCGCATTCAGTTCTAGGCACACCGGAATTTATGGCACCAGAGCTATATGAAGAGGATTACACAGAAATGGTAGACATATACCTCATTTGGAATGTTAGTATTAGAGATGGTGACACTAGAGATTCCATATAGTGAATGTGACAATGTTGCAAAGATATACAAGAAGGTGACTTCAGGTGTGAGACCGCAATCCTTGAACAAGATAAAAGATGTAGAAGTGAAGACTTTCATCGAAAAGTGTCTCGCTCAACCAAGGGATAGACCTTCTGCTGAGGAATTGCTAAAGGATCCTTTTTTTGATGATGTAGAGTACGATGAAAACGACGATGTTGATTACTAA
Protein sequence

>MS.gene69707.t1

MTNKNIIALYNVWRDKDHNTLNFITEVCTSGNLREYRKKHKHVSINALKKWSKQILEGLNYLHVHDPCIIHRDLNCSNVFVNGNTGQVKIGDLGLAAIVGKNHSAHSVLGTPEFMAPELYEEDYTEMVDIYLIWNIYKKVTSGVRPQSLNKIKDVEVKTFIEKCLAQPRDRPSAEELLKDPFFDDVEYDENDDVDY