AlfalfaGEDB | MS.gene69916

M. sativa cultivar XinJiangDaYe / MS.gene69916

KEGG: -
GO: GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141
PFAM: PF04504.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69916.t1	XP_003591032.2	79.4	373	75	1	1	373	1	371	2.40E-126	462.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69916.t1	F4K5T4	36.4	349	194	7	53	373	74	422	9.0e-42	172.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69916.t1	G7I7E7	79.4	373	75	1	1	373	1	371	1.7e-126	462.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene69916.t1	TF	GeBP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69916.t1	MTR_1g081580	90.323	372	34	1	1	372	1	370	0.0	614
MS.gene69916.t1	MTR_7g114600	42.079	404	149	13	49	377	45	438	3.23e-85	266
MS.gene69916.t1	MTR_1g081560	37.415	294	134	10	88	374	123	373	2.04e-45	160
MS.gene69916.t1	MTR_1g081570	49.645	141	27	3	50	189	2	99	5.06e-32	117
MS.gene69916.t1	MTR_3g070120	37.037	135	75	3	97	231	153	277	9.05e-16	78.6
MS.gene69916.t1	MTR_2g010790	34.615	104	58	3	92	195	199	292	8.24e-11	63.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69916.t1	AT5G28040	41.755	376	171	14	43	378	60	427	6.10e-70	226
MS.gene69916.t1	AT5G28040	41.755	376	171	14	43	378	60	427	6.10e-70	226
MS.gene69916.t1	AT3G04930	40.749	427	176	18	20	373	29	451	1.32e-59	200
MS.gene69916.t1	AT3G04930	39.589	341	145	15	20	303	29	365	1.04e-41	151
MS.gene69916.t1	AT4G00390	33.854	192	100	5	50	240	115	280	1.81e-22	98.2
MS.gene69916.t1	AT1G61730	36.646	161	92	3	35	194	97	248	5.84e-22	96.7
MS.gene69916.t1	AT4G25210	42.991	107	56	2	92	194	136	241	1.86e-20	92.4
MS.gene69916.t1	AT1G11510	44.211	95	50	1	97	191	138	229	5.29e-19	87.8
MS.gene69916.t1	AT1G11510	44.211	95	50	1	97	191	109	200	6.18e-19	87.4
MS.gene69916.t1	AT4G01260	38.365	159	71	7	61	194	51	207	3.82e-18	85.1

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Find 120 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCACTGGATGAAAAG+TGG	0.591957	1.4:+66034883	MS.gene69916:CDS
AAATGAGAAGAATTAGGGTT+AGG	0.361264	1.4:-66034522	None:intergenic
AACGGTAATTCAACGCCAAT+TGG	0.467910	1.4:+66034456	MS.gene69916:CDS
AAGAATTAGGGTTAGGGTTG+GGG	0.305318	1.4:-66034515	None:intergenic
AAGAGAAGACCAGCGATTCT+CGG	0.466132	1.4:+66034139	MS.gene69916:CDS
AATCATGCACATAATGTACC+TGG	0.574034	1.4:+66034696	MS.gene69916:CDS
AATGAGAAGAATTAGGGTTA+GGG	0.441702	1.4:-66034521	None:intergenic
ACCAAAAGGACTCCCACTCA+TGG	0.598783	1.4:-66034781	None:intergenic
ACCAGCTTGTTGATAAGCTT+CGG	0.428179	1.4:+66034316	MS.gene69916:CDS
ACCATGAGTGGGAGTCCTTT+TGG	0.299111	1.4:+66034780	MS.gene69916:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGAGAAGAATTAGGGTT+AGG	-	chr1.4:66034525-66034544	None:intergenic	30.0%
AATGAGAAGAATTAGGGTTA+GGG	-	chr1.4:66034524-66034543	None:intergenic	30.0%
CAGTCAAATGAGAAGAATTA+GGG	-	chr1.4:66034530-66034549	None:intergenic	30.0%
GAAAATCGTGATAGAAGTAA+CGG	+	chr1.4:66034672-66034691	MS.gene69916:CDS	30.0%
GAAATTTCACACAAAATCTG+GGG	+	chr1.4:66034429-66034448	MS.gene69916:CDS	30.0%
GATAATCATCAGAATAACTC+CGG	+	chr1.4:66034624-66034643	MS.gene69916:CDS	30.0%
TCAGTCAAATGAGAAGAATT+AGG	-	chr1.4:66034531-66034550	None:intergenic	30.0%
AATCATGCACATAATGTACC+TGG	+	chr1.4:66034696-66034715	MS.gene69916:CDS	35.0%
ATCGTTCTATGATCACATGA+AGG	+	chr1.4:66034266-66034285	MS.gene69916:CDS	35.0%
ATTGCTGCTATTGGTATTAC+CGG	-	chr1.4:66034646-66034665	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	66033880	66035058	66033880	ID=MS.gene69916
chr1.4	mRNA	66033880	66035058	66033880	ID=MS.gene69916.t1;Parent=MS.gene69916
chr1.4	exon	66033880	66035058	66033880	ID=MS.gene69916.t1.exon1;Parent=MS.gene69916.t1
chr1.4	CDS	66033880	66035058	66033880	ID=cds.MS.gene69916.t1;Parent=MS.gene69916.t1

Gene Sequence

>MS.gene69916

ATGGCATTCTCTCGAAACGGCGTGGTTATCCCCACCCATGATGATTACGCCGACATCGAGGGAGAAGACGACGACGATTTAGAAGAAGAGGACAACTACTTTGTCCAACCAAACACCGACCACCACTATCAAACCGAACAATCTCCGTCAACCTTCGCCACCGCCGCTGTCCCCACCTCCGTCATCTTAGCCCTACCACACGCCTCCGCATCAGCAACAACCATCGACGGCTCCCCTGAACCAAAACGGGAGCCAATGGAAGAGAAGACCAGCGATTCTCGGAAGCTTTTTCAGCGCCTCTGGACTGAAGAAGACGAAATCACGATCCTGCAAGGGTTTCTCAATTACAACGCTAATCGTGAATCCTCCTATCATAACGATACTGGATCGTTCTATGATCACATGAAGGGGAAGATTCAGCTGGATTTCACCAAGAACCAGCTTGTTGATAAGCTTCGGAGGCTGAAGAAGAAGTACCGTACTGCTCTCCAGAAATTTGATTCTGGTAAGGATTTTACTTTCAAAAGTGCTCATGATCAAGCCACTTTTGAAATTTCACACAAAATCTGGGGCAGCAACGGTAATTCAACGCCAATTGGTGTACCTGTTGATGAAGAGGAGGAAATGAGCCCAAACCCCAACCCTAACCCTAATTCTTCTCATTTGACTGAGAAGAAAGCTGCGCAATCTCGCAAGAGATTTCGGGCAGCTGAGGAGGAAAAGCGTGAGTTGACTGATTCTAGAGATAATCATCAGAATAACTCCGGTAATACCAATAGCAGCAATGTGGATGAAAATCGTGATAGAAGTAACGGTAATCATGCACATAATGTACCTGGATTAATCGAAGAGACCGTGAAGAGCTGTTTGACACCGGTGTTGAAGGAGTTATCGAATGCTACCATGAGTGGGAGTCCTTTTGGTCTTGGGGGAAGAGGGTTTGGAGCTGGAGCTTTTTCAATGAATACTGTGCCATTTGGGTTTTTGAATTTGGGGGGCGGAGAAAAGGCACTGGATGAAAAGTGGCGGAAGCAGCAGATCTTGGAGCTGGAGGTGTATTCGAAGCGGTTGGAGCTGGTGCAGGATGAGATCAAGGTTGCGATCGAGGAGTTGAGATCAAATGCTGGAGCTGGAGCCGGAGCCGGAGCTGGAGGTAGTGGAAATAATACCAATCAATAG

Protein sequence

>MS.gene69916.t1

MAFSRNGVVIPTHDDYADIEGEDDDDLEEEDNYFVQPNTDHHYQTEQSPSTFATAAVPTSVILALPHASASATTIDGSPEPKREPMEEKTSDSRKLFQRLWTEEDEITILQGFLNYNANRESSYHNDTGSFYDHMKGKIQLDFTKNQLVDKLRRLKKKYRTALQKFDSGKDFTFKSAHDQATFEISHKIWGSNGNSTPIGVPVDEEEEMSPNPNPNPNSSHLTEKKAAQSRKRFRAAEEEKRELTDSRDNHQNNSGNTNSSNVDENRDRSNGNHAHNVPGLIEETVKSCLTPVLKELSNATMSGSPFGLGGRGFGAGAFSMNTVPFGFLNLGGGEKALDEKWRKQQILELEVYSKRLELVQDEIKVAIEELRSNAGAGAGAGAGGSGNNTNQ