Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69996.t1 | XP_024632961.1 | 46.8 | 660 | 24 | 3 | 1 | 333 | 1 | 660 | 1.20E-121 | 446.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69996.t1 | Q9M8J3 | 49.0 | 51 | 26 | 0 | 212 | 262 | 392 | 442 | 1.5e-08 | 62.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69996.t1 | G7I8T1 | 92.1 | 216 | 17 | 0 | 1 | 216 | 1 | 216 | 5.2e-95 | 357.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene69996.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69996.t1 | MTR_1g083640 | 90.741 | 216 | 20 | 0 | 1 | 216 | 1 | 216 | 4.75e-145 | 411 |
| MS.gene69996.t1 | MTR_0558s0020 | 84.722 | 216 | 18 | 1 | 1 | 216 | 1 | 201 | 1.54e-131 | 377 |
| MS.gene69996.t1 | MTR_2g014100 | 83.871 | 217 | 26 | 2 | 1 | 216 | 1 | 209 | 7.09e-130 | 371 |
| MS.gene69996.t1 | MTR_3g008240 | 81.019 | 216 | 26 | 1 | 1 | 216 | 1 | 201 | 1.29e-124 | 356 |
| MS.gene69996.t1 | MTR_4g040430 | 81.481 | 216 | 20 | 2 | 1 | 216 | 1 | 196 | 2.57e-124 | 355 |
| MS.gene69996.t1 | MTR_5g071590 | 86.339 | 183 | 22 | 1 | 1 | 183 | 1 | 180 | 2.02e-114 | 330 |
| MS.gene69996.t1 | MTR_8g446020 | 67.593 | 216 | 15 | 2 | 1 | 216 | 1 | 161 | 1.31e-92 | 277 |
| MS.gene69996.t1 | MTR_0337s0040 | 64.815 | 216 | 22 | 2 | 1 | 216 | 1 | 162 | 7.11e-87 | 261 |
| MS.gene69996.t1 | MTR_6g090505 | 83.824 | 136 | 22 | 0 | 81 | 216 | 1 | 136 | 9.10e-79 | 245 |
| MS.gene69996.t1 | MTR_1281s0010 | 94.495 | 109 | 6 | 0 | 35 | 143 | 1 | 109 | 9.68e-71 | 216 |
| MS.gene69996.t1 | MTR_1g055240 | 88.182 | 110 | 13 | 0 | 107 | 216 | 3 | 112 | 4.55e-68 | 211 |
| MS.gene69996.t1 | MTR_0019s0290 | 83.333 | 120 | 17 | 1 | 100 | 216 | 8 | 127 | 7.76e-68 | 210 |
| MS.gene69996.t1 | MTR_8g046060 | 79.167 | 96 | 11 | 2 | 1 | 95 | 91 | 178 | 7.77e-39 | 137 |
| MS.gene69996.t1 | MTR_4g008820 | 76.842 | 95 | 7 | 1 | 1 | 95 | 125 | 204 | 9.64e-37 | 140 |
| MS.gene69996.t1 | MTR_4g133495 | 67.188 | 64 | 18 | 1 | 273 | 333 | 88 | 151 | 3.37e-20 | 89.4 |
| MS.gene69996.t1 | MTR_4g133340 | 67.188 | 64 | 18 | 1 | 273 | 333 | 88 | 151 | 3.37e-20 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69996.t1 | AT3G06250 | 48.077 | 52 | 27 | 0 | 211 | 262 | 391 | 442 | 1.15e-11 | 66.2 |
| MS.gene69996.t1 | AT3G06250 | 48.077 | 52 | 27 | 0 | 211 | 262 | 391 | 442 | 1.15e-11 | 66.2 |
| MS.gene69996.t1 | AT3G06250 | 48.077 | 52 | 27 | 0 | 211 | 262 | 391 | 442 | 1.15e-11 | 66.2 |
Find 45 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATTTCAGCTGCCTTTAT+TGG | 0.156227 | 8.1:-32851334 | MS.gene69996:intron |
| AATCGTCTGTGGTTTCTTAT+TGG | 0.195298 | 8.1:+32851207 | None:intergenic |
| GAGAACGTCTTATGAAGTTT+TGG | 0.251408 | 8.1:-32852167 | MS.gene69996:CDS |
| TCTGTTGTTGGCCTGTTGTT+AGG | 0.292589 | 8.1:+32852433 | None:intergenic |
| TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 8.1:+32852242 | None:intergenic |
| ATGATTGTCAAAACCAATAA+AGG | 0.357876 | 8.1:+32851321 | None:intergenic |
| CGATCATGATCTTCAAGACT+TGG | 0.399935 | 8.1:+32850446 | None:intergenic |
| GCTCTTATAAATTCTAAAGT+TGG | 0.400120 | 8.1:-32852199 | MS.gene69996:CDS |
| CATGTCGTATGTTTGAGAAC+AGG | 0.415108 | 8.1:-32850370 | MS.gene69996:CDS |
| CGTTATGTTTGTAACAAAGA+AGG | 0.427485 | 8.1:-32852481 | MS.gene69996:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 8.1:-32852229 | MS.gene69996:CDS |
| TCCATGATTCTTTATTGCTA+GGG | 0.444266 | 8.1:+32852644 | None:intergenic |
| TTCCATGATTCTTTATTGCT+AGG | 0.445442 | 8.1:+32852643 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 8.1:-32852364 | MS.gene69996:CDS |
| ATGTGTATAAGATATATAGA+TGG | 0.452819 | 8.1:-32852312 | MS.gene69996:CDS |
| ACCTGTGGACTGTCTGTTGT+TGG | 0.465317 | 8.1:+32852421 | None:intergenic |
| GTTTACTTAATCCTAACAAC+AGG | 0.470860 | 8.1:-32852444 | MS.gene69996:CDS |
| ATCATGATCGATTTGATGAA+AGG | 0.476999 | 8.1:-32850433 | MS.gene69996:CDS |
| CTCTTTAAAACATATTGTCC+AGG | 0.491965 | 8.1:+32850295 | None:intergenic |
| CCCCTAGCAATAAAGAATCA+TGG | 0.497001 | 8.1:-32852645 | MS.gene69996:CDS |
| TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 8.1:+32852370 | None:intergenic |
| AGCTGGAATATATTTGAAGC+TGG | 0.507410 | 8.1:-32852347 | MS.gene69996:CDS |
| ACAAAACAAGAAATCTGATA+AGG | 0.511435 | 8.1:-32852515 | MS.gene69996:CDS |
| CTAAGGTAACACGAATGCTC+TGG | 0.517941 | 8.1:+32852259 | None:intergenic |
| GTCAGCATGAATCATTGCTA+GGG | 0.522802 | 8.1:+32852684 | None:intergenic |
| GATCATGATCTTCAAGACTT+GGG | 0.523871 | 8.1:+32850447 | None:intergenic |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 8.1:-32852470 | MS.gene69996:CDS |
| TAAGATATATAGATGGGATG+TGG | 0.528498 | 8.1:-32852305 | MS.gene69996:CDS |
| GAATGCTCTGGTTTATGTAA+TGG | 0.534744 | 8.1:+32852271 | None:intergenic |
| CCATGATTCTTTATTGCTAG+GGG | 0.537011 | 8.1:+32852645 | None:intergenic |
| TGTCAGCATGAATCATTGCT+AGG | 0.540740 | 8.1:+32852683 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 8.1:-32852469 | MS.gene69996:CDS |
| ATGTCGTATGTTTGAGAACA+GGG | 0.560861 | 8.1:-32850369 | MS.gene69996:CDS |
| ATCATGATCTTCAAGACTTG+GGG | 0.583938 | 8.1:+32850448 | None:intergenic |
| AACACAATAACACACTAGCC+TGG | 0.584442 | 8.1:+32851176 | None:intergenic |
| TGTGTATAAGATATATAGAT+GGG | 0.601002 | 8.1:-32852311 | MS.gene69996:CDS |
| AGTTCTTAGAAGATAATACC+TGG | 0.602513 | 8.1:-32850313 | MS.gene69996:CDS |
| TCACTGATTCATGCTGAGAG+TGG | 0.606950 | 8.1:-32852724 | MS.gene69996:CDS |
| GCCAACAACAGACAGTCCAC+AGG | 0.619933 | 8.1:-32852422 | MS.gene69996:CDS |
| ACATCAACTTCATCTGAGAG+TGG | 0.622661 | 8.1:-32852769 | MS.gene69996:CDS |
| TTCACAAACTCAATAACCTG+TGG | 0.626760 | 8.1:+32852406 | None:intergenic |
| TGGTCTGTATAAATCGTCTG+TGG | 0.650424 | 8.1:+32851196 | None:intergenic |
| TGTCGTATGTTTGAGAACAG+GGG | 0.653807 | 8.1:-32850368 | MS.gene69996:CDS |
| TCAGCATGAATCATTGCTAG+GGG | 0.681156 | 8.1:+32852685 | None:intergenic |
| ACAGACGATTTATACAGACC+AGG | 0.720235 | 8.1:-32851194 | MS.gene69996:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGATGAGTTAAATAATT+TGG | - | chr8.1:32852011-32852030 | MS.gene69996:intron | 15.0% |
| !! | ACATACTTATTAGAATACTT+AGG | - | chr8.1:32851486-32851505 | MS.gene69996:intron | 20.0% |
| !! | ACTGAACAAACAATAAATAT+CGG | - | chr8.1:32851187-32851206 | MS.gene69996:intron | 20.0% |
| !! | ATGTGTATAAGATATATAGA+TGG | - | chr8.1:32850752-32850771 | MS.gene69996:intron | 20.0% |
| !! | TGAATATCATAGTAAAAAGA+TGG | + | chr8.1:32851066-32851085 | None:intergenic | 20.0% |
| !! | TGTGTATAAGATATATAGAT+GGG | - | chr8.1:32850753-32850772 | MS.gene69996:intron | 20.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | - | chr8.1:32850466-32850485 | MS.gene69996:CDS | 20.0% |
| !!! | AATCAGATTTTGACTATAAT+TGG | - | chr8.1:32852052-32852071 | MS.gene69996:intron | 20.0% |
| !!! | ATAACACTGAATTTTCTATT+AGG | - | chr8.1:32850500-32850519 | MS.gene69996:intron | 20.0% |
| !!! | ATCAGATTTTGACTATAATT+GGG | - | chr8.1:32852053-32852072 | MS.gene69996:intron | 20.0% |
| !!! | ATGATGATAAATTGTTTTGA+TGG | - | chr8.1:32852081-32852100 | MS.gene69996:intron | 20.0% |
| !!! | TTAATTTCATTAAGTTGTTC+TGG | - | chr8.1:32851256-32851275 | MS.gene69996:CDS | 20.0% |
| !!! | TTCTTATAATTTGTGATTAC+AGG | - | chr8.1:32851549-32851568 | MS.gene69996:intron | 20.0% |
| ! | ACAAAACAAGAAATCTGATA+AGG | - | chr8.1:32850549-32850568 | MS.gene69996:intron | 25.0% |
| ! | AGTAAAAAACACTAACCTAA+TGG | + | chr8.1:32851213-32851232 | None:intergenic | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | + | chr8.1:32851746-32851765 | None:intergenic | 25.0% |
| ! | CAAACTTAAATGATGTTGAT+TGG | - | chr8.1:32851410-32851429 | MS.gene69996:intron | 25.0% |
| ! | CAACTAGATTATTCTCTATT+CGG | - | chr8.1:32851138-32851157 | MS.gene69996:intron | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr8.1:32852452-32852471 | None:intergenic | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr8.1:32852278-32852297 | MS.gene69996:CDS | 25.0% |
| ! | TCTTACTTATTTGAACTACA+CGG | - | chr8.1:32851332-32851351 | MS.gene69996:intron | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr8.1:32852452-32852471 | MS.gene69996:CDS | 25.0% |
| !! | AACTTTGAAAAACTTCTCAA+AGG | + | chr8.1:32852499-32852518 | None:intergenic | 25.0% |
| !! | CAAAGTTTTCACAATTGATA+AGG | - | chr8.1:32852512-32852531 | MS.gene69996:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATA+TGG | - | chr8.1:32851701-32851720 | MS.gene69996:intron | 25.0% |
| !! | TTAACCATGTTGTTTGTTTA+GGG | - | chr8.1:32851357-32851376 | MS.gene69996:intron | 25.0% |
| !! | TTTAACCATGTTGTTTGTTT+AGG | - | chr8.1:32851356-32851375 | MS.gene69996:intron | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr8.1:32851100-32851119 | MS.gene69996:intron | 25.0% |
| !!! | ATTTATATTTTGAACTGCCT+AGG | - | chr8.1:32851434-32851453 | MS.gene69996:intron | 25.0% |
| !!! | GACAATATGTTTTAAAGAGT+TGG | - | chr8.1:32852773-32852792 | MS.gene69996:CDS | 25.0% |
| !!! | GCTCTTATAAATTCTAAAGT+TGG | - | chr8.1:32850865-32850884 | MS.gene69996:intron | 25.0% |
| !!! | TGATAAATTGTTTTGATGGA+AGG | - | chr8.1:32852085-32852104 | MS.gene69996:intron | 25.0% |
| AAAACACCTGGAAAACTATT+CGG | + | chr8.1:32851919-32851938 | None:intergenic | 30.0% | |
| AAATCCCTAAACAAACAACA+TGG | + | chr8.1:32851364-32851383 | None:intergenic | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr8.1:32850595-32850614 | MS.gene69996:intron | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr8.1:32851195-32851214 | MS.gene69996:CDS | 30.0% | |
| AATAAATGCAAAGCAAGAAG+GGG | + | chr8.1:32852415-32852434 | None:intergenic | 30.0% | |
| AGTTCTTAGAAGATAATACC+TGG | - | chr8.1:32852751-32852770 | MS.gene69996:CDS | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | - | chr8.1:32850583-32850602 | MS.gene69996:intron | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr8.1:32852457-32852476 | None:intergenic | 30.0% | |
| CTTACTTATTTGAACTACAC+GGG | - | chr8.1:32851333-32851352 | MS.gene69996:intron | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr8.1:32852455-32852474 | MS.gene69996:CDS | 30.0% | |
| GAATAAATGCAAAGCAAGAA+GGG | + | chr8.1:32852416-32852435 | None:intergenic | 30.0% | |
| GAGAATGCAAAGAAAAATCT+TGG | - | chr8.1:32851967-32851986 | MS.gene69996:intron | 30.0% | |
| GTTTACTTAATCCTAACAAC+AGG | - | chr8.1:32850620-32850639 | MS.gene69996:intron | 30.0% | |
| TAAATTTCAGCTGCCTTTAT+TGG | - | chr8.1:32851730-32851749 | MS.gene69996:intron | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr8.1:32850594-32850613 | MS.gene69996:intron | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | - | chr8.1:32850759-32850778 | MS.gene69996:intron | 30.0% | |
| TAAGTTTGTCTCAAACCAAA+TGG | + | chr8.1:32851398-32851417 | None:intergenic | 30.0% | |
| TCCATGATTCTTTATTGCTA+GGG | + | chr8.1:32850423-32850442 | None:intergenic | 30.0% | |
| TGAATAAATGCAAAGCAAGA+AGG | + | chr8.1:32852417-32852436 | None:intergenic | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | + | chr8.1:32850825-32850844 | None:intergenic | 30.0% | |
| TTCCATGATTCTTTATTGCT+AGG | + | chr8.1:32850424-32850443 | None:intergenic | 30.0% | |
| TTTAAGTCTGAAAACCGAAA+AGG | + | chr8.1:32850952-32850971 | None:intergenic | 30.0% | |
| ! | AGAACGTCTTATGAAGTTTT+GGG | - | chr8.1:32850898-32850917 | MS.gene69996:CDS | 30.0% |
| ! | TATGATGATGCTGATAATGA+CGG | - | chr8.1:32852546-32852565 | MS.gene69996:CDS | 30.0% |
| ! | TATTTCAATGCTTTTCTTCG+TGG | - | chr8.1:32852222-32852241 | MS.gene69996:CDS | 30.0% |
| !! | ATCATGATCGATTTGATGAA+AGG | - | chr8.1:32852631-32852650 | MS.gene69996:CDS | 30.0% |
| !! | CTCTTTAAAACATATTGTCC+AGG | + | chr8.1:32852772-32852791 | None:intergenic | 30.0% |
| !!! | TAGTGTTTTTTACTTCTCTC+AGG | - | chr8.1:32851219-32851238 | MS.gene69996:CDS | 30.0% |
| AATCGTCTGTGGTTTCTTAT+TGG | + | chr8.1:32851860-32851879 | None:intergenic | 35.0% | |
| AATTCGTCAAAAAGAGATGG+TGG | - | chr8.1:32850987-32851006 | MS.gene69996:intron | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | - | chr8.1:32852292-32852311 | MS.gene69996:CDS | 35.0% | |
| AGTAAAAAGATGGTTTCGAG+AGG | + | chr8.1:32851056-32851075 | None:intergenic | 35.0% | |
| ATCATGATCTTCAAGACTTG+GGG | + | chr8.1:32852619-32852638 | None:intergenic | 35.0% | |
| ATGTCGTATGTTTGAGAACA+GGG | - | chr8.1:32852695-32852714 | MS.gene69996:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr8.1:32852293-32852312 | MS.gene69996:CDS | 35.0% | |
| CCATGATTCTTTATTGCTAG+GGG | + | chr8.1:32850422-32850441 | None:intergenic | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr8.1:32850835-32850854 | MS.gene69996:intron | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | - | chr8.1:32852418-32852437 | MS.gene69996:CDS | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | - | chr8.1:32850684-32850703 | MS.gene69996:intron | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | - | chr8.1:32850678-32850697 | MS.gene69996:intron | 35.0% | |
| GACAATTCGTCAAAAAGAGA+TGG | - | chr8.1:32850984-32851003 | MS.gene69996:intron | 35.0% | |
| GATCATGATCTTCAAGACTT+GGG | + | chr8.1:32852620-32852639 | None:intergenic | 35.0% | |
| GTAAAAAGATGGTTTCGAGA+GGG | + | chr8.1:32851055-32851074 | None:intergenic | 35.0% | |
| TAAAGAATCGAACAAGTGAG+TGG | + | chr8.1:32852263-32852282 | None:intergenic | 35.0% | |
| TAAGACCTATAGTCAATCCT+AGG | + | chr8.1:32851317-32851336 | None:intergenic | 35.0% | |
| TCCAAAACATCAACATTCGA+AGG | + | chr8.1:32852573-32852592 | None:intergenic | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | - | chr8.1:32850683-32850702 | MS.gene69996:intron | 35.0% | |
| TTCACAAACTCAATAACCTG+TGG | + | chr8.1:32850661-32850680 | None:intergenic | 35.0% | |
| ! | AGACAGCAGATACTTTTGAT+TGG | - | chr8.1:32851806-32851825 | MS.gene69996:intron | 35.0% |
| ! | AGCTGGAATATATTTGAAGC+TGG | - | chr8.1:32850717-32850736 | MS.gene69996:intron | 35.0% |
| ! | AGTTTTCCAGGTGTTTTTCA+TGG | - | chr8.1:32851922-32851941 | MS.gene69996:intron | 35.0% |
| ! | ATGATGATGCTGATAATGAC+GGG | - | chr8.1:32852547-32852566 | MS.gene69996:CDS | 35.0% |
| ! | ATTTAGTTTACGCATTGCTG+AGG | - | chr8.1:32851520-32851539 | MS.gene69996:intron | 35.0% |
| ! | ATTTTCTCGCTTCTACCATT+TGG | - | chr8.1:32851380-32851399 | MS.gene69996:intron | 35.0% |
| ! | GAATGCTCTGGTTTATGTAA+TGG | + | chr8.1:32850796-32850815 | None:intergenic | 35.0% |
| ! | GAGAACGTCTTATGAAGTTT+TGG | - | chr8.1:32850897-32850916 | MS.gene69996:CDS | 35.0% |
| ! | GTTTTCCAGGTGTTTTTCAT+GGG | - | chr8.1:32851923-32851942 | MS.gene69996:intron | 35.0% |
| ! | TCAATTCCGAATAGTTTTCC+AGG | - | chr8.1:32851910-32851929 | MS.gene69996:intron | 35.0% |
| !!! | CATCGAAAGAGTGTTTTGTT+TGG | - | chr8.1:32851763-32851782 | MS.gene69996:intron | 35.0% |
| !!! | GCTAGTATTTTTTGGTCAGA+TGG | - | chr8.1:32851108-32851127 | MS.gene69996:intron | 35.0% |
| !!! | TCGACATGTTTTGAAGATCT+TGG | - | chr8.1:32852728-32852747 | MS.gene69996:CDS | 35.0% |
| !!! | TCTTATGAAGTTTTGGGTCA+GGG | - | chr8.1:32850904-32850923 | MS.gene69996:intron | 35.0% |
| !!! | TTTTTCATGGGCTTTGTTCA+TGG | - | chr8.1:32851935-32851954 | MS.gene69996:intron | 35.0% |
| AACACAATAACACACTAGCC+TGG | + | chr8.1:32851891-32851910 | None:intergenic | 40.0% | |
| AACTGCCTAGGATTGACTAT+AGG | - | chr8.1:32851309-32851328 | MS.gene69996:CDS | 40.0% | |
| ACAGACGATTTATACAGACC+AGG | - | chr8.1:32851870-32851889 | MS.gene69996:intron | 40.0% | |
| ACATCAACTTCATCTGAGAG+TGG | - | chr8.1:32850295-32850314 | MS.gene69996:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr8.1:32852469-32852488 | MS.gene69996:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+AGG | - | chr8.1:32852694-32852713 | MS.gene69996:CDS | 40.0% | |
| CCCCTAGCAATAAAGAATCA+TGG | - | chr8.1:32850419-32850438 | MS.gene69996:CDS | 40.0% | |
| CGATCATGATCTTCAAGACT+TGG | + | chr8.1:32852621-32852640 | None:intergenic | 40.0% | |
| CTTACGCAAATCGTATGCAT+TGG | - | chr8.1:32852139-32852158 | MS.gene69996:intron | 40.0% | |
| GCATACGATTTGCGTAAGTT+TGG | + | chr8.1:32852137-32852156 | None:intergenic | 40.0% | |
| GTCAGCATGAATCATTGCTA+GGG | + | chr8.1:32850383-32850402 | None:intergenic | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | - | chr8.1:32852468-32852487 | MS.gene69996:CDS | 40.0% | |
| TCACACAAGACAAAATGCCT+AGG | + | chr8.1:32851454-32851473 | None:intergenic | 40.0% | |
| TCAGCATGAATCATTGCTAG+GGG | + | chr8.1:32850382-32850401 | None:intergenic | 40.0% | |
| TGGTCTGTATAAATCGTCTG+TGG | + | chr8.1:32851871-32851890 | None:intergenic | 40.0% | |
| TGTCAGCATGAATCATTGCT+AGG | + | chr8.1:32850384-32850403 | None:intergenic | 40.0% | |
| TGTCGTATGTTTGAGAACAG+GGG | - | chr8.1:32852696-32852715 | MS.gene69996:CDS | 40.0% | |
| ! | AGGGGTGTACTTGTTTACAA+CGG | + | chr8.1:32852397-32852416 | None:intergenic | 40.0% |
| ! | CAGTACATTTTGAACTGCCT+AGG | - | chr8.1:32851297-32851316 | MS.gene69996:CDS | 40.0% |
| ! | GCACAGAGAATCTTCCTTTT+CGG | - | chr8.1:32850935-32850954 | MS.gene69996:intron | 40.0% |
| ! | GCCTTCGAATGTTGATGTTT+TGG | - | chr8.1:32852569-32852588 | MS.gene69996:CDS | 40.0% |
| ! | GTCAAGTCACATTTTACAGC+TGG | - | chr8.1:32852174-32852193 | MS.gene69996:CDS | 40.0% |
| ! | TCATGCTGAGTTGGACTTTA+AGG | - | chr8.1:32852320-32852339 | MS.gene69996:CDS | 40.0% |
| !! | TATGCATTGGTCTTCAGCTT+GGG | - | chr8.1:32852152-32852171 | MS.gene69996:intron | 40.0% |
| !!! | GTCTTATGAAGTTTTGGGTC+AGG | - | chr8.1:32850903-32850922 | MS.gene69996:intron | 40.0% |
| AATCGAACAAGTGAGTGGTC+TGG | + | chr8.1:32852258-32852277 | None:intergenic | 45.0% | |
| AGCCACCTAAAGTATGAGGT+AGG | + | chr8.1:32852111-32852130 | None:intergenic | 45.0% | |
| CAAAGCCCATGAAAAACACC+TGG | + | chr8.1:32851931-32851950 | None:intergenic | 45.0% | |
| CTAAGGTAACACGAATGCTC+TGG | + | chr8.1:32850808-32850827 | None:intergenic | 45.0% | |
| GAAAAACCTGAGGAAAGGGT+TGG | - | chr8.1:32850688-32850707 | MS.gene69996:intron | 45.0% | |
| GAAGGCCTACCTCATACTTT+AGG | - | chr8.1:32852103-32852122 | MS.gene69996:intron | 45.0% | |
| GACAAGCCACCTAAAGTATG+AGG | + | chr8.1:32852115-32852134 | None:intergenic | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | - | chr8.1:32852311-32852330 | MS.gene69996:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | + | chr8.1:32850697-32850716 | None:intergenic | 45.0% | |
| ! | CGTCAAAAAGAGATGGTGGT+TGG | - | chr8.1:32850991-32851010 | MS.gene69996:intron | 45.0% |
| ! | TCTGTTGTTGGCCTGTTGTT+AGG | + | chr8.1:32850634-32850653 | None:intergenic | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr8.1:32850700-32850719 | MS.gene69996:intron | 45.0% |
| !! | GTATGCATTGGTCTTCAGCT+TGG | - | chr8.1:32852151-32852170 | MS.gene69996:intron | 45.0% |
| !! | TCACTGATTCATGCTGAGAG+TGG | - | chr8.1:32850340-32850359 | MS.gene69996:CDS | 45.0% |
| ATCCCAACAGTCAGCTGATG+CGG | - | chr8.1:32852370-32852389 | MS.gene69996:CDS | 50.0% | |
| GGCCTACCTCATACTTTAGG+TGG | - | chr8.1:32852106-32852125 | MS.gene69996:intron | 50.0% | |
| ! | ACCTGTGGACTGTCTGTTGT+TGG | + | chr8.1:32850646-32850665 | None:intergenic | 50.0% |
| !! | GTTTTGGGTCAGGGAGTTTG+AGG | - | chr8.1:32850913-32850932 | MS.gene69996:intron | 50.0% |
| !! | TGGGCTTTGTTCATGGCACA+TGG | - | chr8.1:32851942-32851961 | MS.gene69996:intron | 50.0% |
| GACCGCATCAGCTGACTGTT+GGG | + | chr8.1:32852375-32852394 | None:intergenic | 55.0% | |
| GCCAACAACAGACAGTCCAC+AGG | - | chr8.1:32850642-32850661 | MS.gene69996:intron | 55.0% | |
| GGACCGCATCAGCTGACTGT+TGG | + | chr8.1:32852376-32852395 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 32850286 | 32852800 | 32850286 | ID=MS.gene69996 |
| chr8.1 | mRNA | 32850286 | 32852800 | 32850286 | ID=MS.gene69996.t1;Parent=MS.gene69996 |
| chr8.1 | exon | 32852167 | 32852800 | 32852167 | ID=MS.gene69996.t1.exon1;Parent=MS.gene69996.t1 |
| chr8.1 | CDS | 32852167 | 32852800 | 32852167 | ID=cds.MS.gene69996.t1;Parent=MS.gene69996.t1 |
| chr8.1 | exon | 32851191 | 32851346 | 32851191 | ID=MS.gene69996.t1.exon2;Parent=MS.gene69996.t1 |
| chr8.1 | CDS | 32851191 | 32851346 | 32851191 | ID=cds.MS.gene69996.t1;Parent=MS.gene69996.t1 |
| chr8.1 | exon | 32850870 | 32850917 | 32850870 | ID=MS.gene69996.t1.exon3;Parent=MS.gene69996.t1 |
| chr8.1 | CDS | 32850870 | 32850917 | 32850870 | ID=cds.MS.gene69996.t1;Parent=MS.gene69996.t1 |
| chr8.1 | exon | 32850286 | 32850488 | 32850286 | ID=MS.gene69996.t1.exon4;Parent=MS.gene69996.t1 |
| chr8.1 | CDS | 32850286 | 32850488 | 32850286 | ID=cds.MS.gene69996.t1;Parent=MS.gene69996.t1 |
| Gene Sequence |
| Protein sequence |
