Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70013.t1 | KEH32920.1 | 48.5 | 291 | 17 | 4 | 73 | 230 | 390 | 680 | 4.30E-51 | 211.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70013.t1 | F4JZT3 | 56.2 | 64 | 28 | 0 | 10 | 73 | 16 | 79 | 7.5e-12 | 72.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70013.t1 | A0A072V462 | 48.5 | 291 | 17 | 4 | 73 | 230 | 390 | 680 | 3.1e-51 | 211.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene70013.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70013.t1 | MTR_3g011560 | 55.882 | 170 | 13 | 2 | 123 | 230 | 511 | 680 | 3.65e-48 | 168 |
| MS.gene70013.t1 | MTR_3g011560 | 87.755 | 49 | 6 | 0 | 73 | 121 | 390 | 438 | 4.60e-21 | 91.7 |
| MS.gene70013.t1 | MTR_8g017000 | 51.366 | 183 | 14 | 2 | 123 | 230 | 511 | 693 | 6.54e-46 | 162 |
| MS.gene70013.t1 | MTR_8g017000 | 87.755 | 49 | 6 | 0 | 73 | 121 | 390 | 438 | 4.81e-21 | 91.7 |
| MS.gene70013.t1 | MTR_2g037270 | 51.366 | 183 | 14 | 2 | 123 | 230 | 511 | 693 | 7.76e-46 | 162 |
| MS.gene70013.t1 | MTR_2g037270 | 87.755 | 49 | 6 | 0 | 73 | 121 | 390 | 438 | 4.71e-21 | 91.7 |
| MS.gene70013.t1 | MTR_8g063580 | 91.781 | 73 | 6 | 0 | 1 | 73 | 1 | 73 | 8.84e-44 | 144 |
| MS.gene70013.t1 | MTR_2g023630 | 40.686 | 204 | 70 | 7 | 73 | 231 | 128 | 325 | 6.70e-32 | 119 |
| MS.gene70013.t1 | MTR_4g050295 | 48.101 | 158 | 61 | 5 | 74 | 231 | 132 | 268 | 2.00e-26 | 103 |
| MS.gene70013.t1 | MTR_6g006270 | 46.250 | 160 | 37 | 5 | 73 | 231 | 110 | 221 | 8.42e-26 | 100 |
| MS.gene70013.t1 | MTR_7g099500 | 63.014 | 73 | 26 | 1 | 1 | 73 | 1 | 72 | 4.95e-23 | 90.9 |
| MS.gene70013.t1 | MTR_7g098910 | 55.072 | 69 | 31 | 0 | 5 | 73 | 15 | 83 | 4.43e-19 | 80.9 |
| MS.gene70013.t1 | MTR_4g048180 | 25.726 | 241 | 82 | 5 | 73 | 222 | 35 | 269 | 1.71e-17 | 79.3 |
| MS.gene70013.t1 | MTR_6g012130 | 91.429 | 35 | 3 | 0 | 196 | 230 | 22 | 56 | 1.10e-15 | 69.3 |
| MS.gene70013.t1 | MTR_2g092960 | 61.224 | 49 | 19 | 0 | 73 | 121 | 918 | 966 | 3.74e-15 | 74.7 |
| MS.gene70013.t1 | MTR_0462s0020 | 74.419 | 43 | 11 | 0 | 79 | 121 | 1 | 43 | 1.22e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70013.t1 | AT5G26594 | 56.250 | 64 | 28 | 0 | 10 | 73 | 16 | 79 | 1.14e-15 | 71.6 |
| MS.gene70013.t1 | AT3G04280 | 34.426 | 122 | 72 | 5 | 12 | 128 | 22 | 140 | 8.62e-12 | 61.2 |
| MS.gene70013.t1 | AT3G04280 | 34.426 | 122 | 72 | 5 | 12 | 128 | 22 | 140 | 8.62e-12 | 61.2 |
| MS.gene70013.t1 | AT3G04280 | 34.426 | 122 | 72 | 5 | 12 | 128 | 22 | 140 | 8.62e-12 | 61.2 |
Find 45 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTCAACACTTTCATTAAA+TGG | 0.223315 | 8.1:+33154404 | MS.gene70013:CDS |
| CTTGATCCATATTACAATCT+TGG | 0.283036 | 8.1:+33154886 | MS.gene70013:CDS |
| AAAGGTTACCTCACGCTTCT+TGG | 0.285767 | 8.1:-33155116 | None:intergenic |
| GTAACCTTTCTATGTTCATT+AGG | 0.299840 | 8.1:+33155130 | MS.gene70013:CDS |
| ACGCTGTGCAAATTTGATTC+TGG | 0.309453 | 8.1:+33155715 | MS.gene70013:CDS |
| CGTCATTTGATGAATTCTTC+GGG | 0.320026 | 8.1:-33153397 | None:intergenic |
| ATACCGTCGTTGTGTTGAAT+TGG | 0.347155 | 8.1:+33154840 | MS.gene70013:CDS |
| ACGTCATTTGATGAATTCTT+CGG | 0.351042 | 8.1:-33153398 | None:intergenic |
| TCAGGTGCTAACTAATGATA+TGG | 0.369241 | 8.1:+33154300 | MS.gene70013:intron |
| CTTTCCTAATGAACATAGAA+AGG | 0.404929 | 8.1:-33155134 | None:intergenic |
| AAGGTTACCTCACGCTTCTT+GGG | 0.406397 | 8.1:-33155115 | None:intergenic |
| TATTGATTATTGTAGAGCTT+TGG | 0.411608 | 8.1:+33155263 | MS.gene70013:intron |
| TATCCTTATCCATCAGGATT+AGG | 0.413585 | 8.1:-33153503 | None:intergenic |
| TTTATTTATTTAGATATTTG+CGG | 0.419290 | 8.1:+33155649 | MS.gene70013:intron |
| GACAACAAGTGCTGTTAACT+TGG | 0.431046 | 8.1:-33153358 | None:intergenic |
| TACCGTCGTTGTGTTGAATT+GGG | 0.437070 | 8.1:+33154841 | MS.gene70013:CDS |
| TGACCTAATCCTGATGGATA+AGG | 0.440174 | 8.1:+33153500 | MS.gene70013:CDS |
| CAGGCATATCCTTATCCATC+AGG | 0.463932 | 8.1:-33153509 | None:intergenic |
| CAAATGACGTTGAGTAACTT+AGG | 0.479404 | 8.1:+33153411 | MS.gene70013:CDS |
| GGATTCAACTCCCTTGCAAA+AGG | 0.489758 | 8.1:+33155670 | MS.gene70013:CDS |
| ACCTCAGTTCCATTCATCTC+AGG | 0.498117 | 8.1:-33153528 | None:intergenic |
| AAGGATATGCCTGAGATGAA+TGG | 0.499813 | 8.1:+33153519 | MS.gene70013:CDS |
| AGGTTATAATAAGCTACAAC+GGG | 0.510355 | 8.1:+33155287 | MS.gene70013:CDS |
| TTGGGCAAAAGTGGCATGTA+CGG | 0.511366 | 8.1:+33154859 | MS.gene70013:CDS |
| AAAATTTGACCTAATCCTGA+TGG | 0.515076 | 8.1:+33153494 | MS.gene70013:CDS |
| GCACTTGTTGTCGATGATGA+TGG | 0.544588 | 8.1:+33153369 | MS.gene70013:CDS |
| GATTATTGTAGAGCTTTGGA+AGG | 0.551376 | 8.1:+33155267 | MS.gene70013:intron |
| GGTTAGAGTGGCTGTTACCA+AGG | 0.554145 | 8.1:+33154321 | MS.gene70013:CDS |
| TGTGTTGAATTGGGCAAAAG+TGG | 0.566772 | 8.1:+33154850 | MS.gene70013:CDS |
| ATGTTCATTAGGAAAGAAGC+CGG | 0.566896 | 8.1:+33155141 | MS.gene70013:CDS |
| AGCCTTTGCATCTATCACCT+TGG | 0.576125 | 8.1:-33154338 | None:intergenic |
| GGAACTTATTGAAGCAAATG+CGG | 0.585341 | 8.1:+33155736 | MS.gene70013:CDS |
| AATTGTTGTCACCTCATCAG+TGG | 0.597754 | 8.1:-33154374 | None:intergenic |
| TACCAAGGTGATAGATGCAA+AGG | 0.597794 | 8.1:+33154336 | MS.gene70013:CDS |
| AAGGTTATAATAAGCTACAA+CGG | 0.600759 | 8.1:+33155286 | MS.gene70013:CDS |
| AACTAATGATATGGTTAGAG+TGG | 0.601806 | 8.1:+33154309 | MS.gene70013:CDS |
| GTCACCTCATCAGTGGGCAC+AGG | 0.609740 | 8.1:-33154367 | None:intergenic |
| ACAGTGGAAATTCGTCAGCA+TGG | 0.623061 | 8.1:+33153468 | MS.gene70013:CDS |
| AGTACCTGTGCCCACTGATG+AGG | 0.629379 | 8.1:+33154363 | MS.gene70013:CDS |
| ATTGTTGTCACCTCATCAGT+GGG | 0.629706 | 8.1:-33154373 | None:intergenic |
| TGCCCAATTCAACACAACGA+CGG | 0.629992 | 8.1:-33154843 | None:intergenic |
| GTCATTTGATGAATTCTTCG+GGG | 0.645477 | 8.1:-33153396 | None:intergenic |
| AATTAATCCCAAGAAGCGTG+AGG | 0.680170 | 8.1:+33155108 | MS.gene70013:CDS |
| TGAGGTGACAACAATTGCTG+AGG | 0.688716 | 8.1:+33154381 | MS.gene70013:CDS |
| GCCTGAGATGAATGGAACTG+AGG | 0.719916 | 8.1:+33153527 | MS.gene70013:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATTAAGTAATTGAA+TGG | - | chr8.1:33154785-33154804 | None:intergenic | 10.0% |
| !! | ATATATAAATGTAAAAATTG+GGG | - | chr8.1:33153573-33153592 | None:intergenic | 10.0% |
| !! | TTTATTTATTTAGATATTTG+CGG | + | chr8.1:33155649-33155668 | MS.gene70013:intron | 10.0% |
| !!! | AAAAATTACTTGTTAAATTA+AGG | - | chr8.1:33154988-33155007 | None:intergenic | 10.0% |
| !!! | TATTTTGTTTGTAAATTTAA+TGG | + | chr8.1:33154759-33154778 | MS.gene70013:intron | 10.0% |
| !!! | TTTTTCTTTTATTTTTTCAA+CGG | - | chr8.1:33153905-33153924 | None:intergenic | 10.0% |
| !!! | TGTGTAATGTTTTATTATAA+TGG | + | chr8.1:33154511-33154530 | MS.gene70013:intron | 15.0% |
| !!! | TTTTTATGTGTTTCTTATAT+AGG | + | chr8.1:33153709-33153728 | MS.gene70013:intron | 15.0% |
| !! | GAAATAGTGGTAAAATTTAT+GGG | + | chr8.1:33153814-33153833 | MS.gene70013:intron | 20.0% |
| !!! | AAAGCTATTTCAATTTGTAA+CGG | + | chr8.1:33154244-33154263 | MS.gene70013:intron | 20.0% |
| !!! | ACTATCAATTTTTGACAAAT+AGG | - | chr8.1:33154590-33154609 | None:intergenic | 20.0% |
| !!! | ACTGATAAATTTTTATATGC+CGG | - | chr8.1:33155163-33155182 | None:intergenic | 20.0% |
| !!! | AGTACAAAACCTTTTTATTA+TGG | - | chr8.1:33154960-33154979 | None:intergenic | 20.0% |
| ! | AAATTTCGTTTCACTATCTT+AGG | + | chr8.1:33154812-33154831 | MS.gene70013:intron | 25.0% |
| ! | AAGGTTATAATAAGCTACAA+CGG | + | chr8.1:33155286-33155305 | MS.gene70013:CDS | 25.0% |
| ! | ATCTCTATATTACAAGTGAT+TGG | - | chr8.1:33155026-33155045 | None:intergenic | 25.0% |
| ! | GAAACTATAACCATTAAGTA+GGG | - | chr8.1:33154024-33154043 | None:intergenic | 25.0% |
| ! | GGAAATAGTGGTAAAATTTA+TGG | + | chr8.1:33153813-33153832 | MS.gene70013:intron | 25.0% |
| ! | TACTTTATCTATCATCTTTG+TGG | + | chr8.1:33155370-33155389 | MS.gene70013:intron | 25.0% |
| ! | TGAAACTATAACCATTAAGT+AGG | - | chr8.1:33154025-33154044 | None:intergenic | 25.0% |
| !! | TATTGATTATTGTAGAGCTT+TGG | + | chr8.1:33155263-33155282 | MS.gene70013:intron | 25.0% |
| !! | TTTTGACCAAGATTGTAATA+TGG | - | chr8.1:33154895-33154914 | None:intergenic | 25.0% |
| !!! | TTGTCAAAAATTGATAGTGA+AGG | + | chr8.1:33154592-33154611 | MS.gene70013:intron | 25.0% |
| AAAATTTGACCTAATCCTGA+TGG | + | chr8.1:33153494-33153513 | MS.gene70013:CDS | 30.0% | |
| AAACAAAGAGTGAACAAATC+TGG | - | chr8.1:33154209-33154228 | None:intergenic | 30.0% | |
| AACAACACTTGTGTGAAAAA+CGG | + | chr8.1:33153438-33153457 | MS.gene70013:CDS | 30.0% | |
| AACTAATGATATGGTTAGAG+TGG | + | chr8.1:33154309-33154328 | MS.gene70013:CDS | 30.0% | |
| ACGTCATTTGATGAATTCTT+CGG | - | chr8.1:33153401-33153420 | None:intergenic | 30.0% | |
| AGGTTATAATAAGCTACAAC+GGG | + | chr8.1:33155287-33155306 | MS.gene70013:CDS | 30.0% | |
| ATACTCAATTTCAGAGTTGA+AGG | + | chr8.1:33155457-33155476 | MS.gene70013:intron | 30.0% | |
| ATATGTTGAACATCGTACAA+TGG | + | chr8.1:33155520-33155539 | MS.gene70013:intron | 30.0% | |
| ATTGATATTGAGCTACCAAA+GGG | + | chr8.1:33154662-33154681 | MS.gene70013:intron | 30.0% | |
| CAAGTGATTGGATATAAAGA+AGG | - | chr8.1:33155014-33155033 | None:intergenic | 30.0% | |
| CTGTCAACACTTTCATTAAA+TGG | + | chr8.1:33154404-33154423 | MS.gene70013:CDS | 30.0% | |
| CTTGATCCATATTACAATCT+TGG | + | chr8.1:33154886-33154905 | MS.gene70013:CDS | 30.0% | |
| CTTTCCTAATGAACATAGAA+AGG | - | chr8.1:33155137-33155156 | None:intergenic | 30.0% | |
| GAGTTCATTCTTGCTTATTT+AGG | + | chr8.1:33153607-33153626 | MS.gene70013:intron | 30.0% | |
| GTAACCTTTCTATGTTCATT+AGG | + | chr8.1:33155130-33155149 | MS.gene70013:CDS | 30.0% | |
| TATAACCATTAAGTAGGGAA+AGG | - | chr8.1:33154019-33154038 | None:intergenic | 30.0% | |
| ! | AAGTTTAAGGCTAAACATAG+TGG | + | chr8.1:33154638-33154657 | MS.gene70013:intron | 30.0% |
| ! | ACAAAAGTACAATGAATGCA+AGG | + | chr8.1:33153955-33153974 | MS.gene70013:intron | 30.0% |
| ! | AGTAGTATGATTTTATCCCA+CGG | + | chr8.1:33155326-33155345 | MS.gene70013:intron | 30.0% |
| ! | AGTTTAAGGCTAAACATAGT+GGG | + | chr8.1:33154639-33154658 | MS.gene70013:intron | 30.0% |
| ! | GATAACTCGAAAAGTCTTTT+TGG | - | chr8.1:33154430-33154449 | None:intergenic | 30.0% |
| ! | TTAACTTCATCCTTTTGCAA+GGG | - | chr8.1:33155683-33155702 | None:intergenic | 30.0% |
| ! | TTTTTCCTTTCCCTACTTAA+TGG | + | chr8.1:33154011-33154030 | MS.gene70013:intron | 30.0% |
| !! | TTTAACTTCATCCTTTTGCA+AGG | - | chr8.1:33155684-33155703 | None:intergenic | 30.0% |
| !!! | TTTTCGAGTTATCGCTAATA+AGG | + | chr8.1:33154437-33154456 | MS.gene70013:CDS | 30.0% |
| AAATTCCATTCCTCACAAGA+TGG | + | chr8.1:33153927-33153946 | MS.gene70013:intron | 35.0% | |
| AACAAAGCAATTACGCTTGA+TGG | + | chr8.1:33153733-33153752 | MS.gene70013:intron | 35.0% | |
| AACCTACATTCAAAACACGA+TGG | + | chr8.1:33154933-33154952 | MS.gene70013:intron | 35.0% | |
| ACAAAGCAATTACGCTTGAT+GGG | + | chr8.1:33153734-33153753 | MS.gene70013:intron | 35.0% | |
| ATCAAATGTGCTCGATTAGT+CGG | - | chr8.1:33155436-33155455 | None:intergenic | 35.0% | |
| ATGTGTAAACAACTTACCGT+GGG | - | chr8.1:33155345-33155364 | None:intergenic | 35.0% | |
| ATGTTCATTAGGAAAGAAGC+CGG | + | chr8.1:33155141-33155160 | MS.gene70013:CDS | 35.0% | |
| ATTTCAGAGTTGAAGGCAAT+CGG | + | chr8.1:33155464-33155483 | MS.gene70013:intron | 35.0% | |
| CAAATGACGTTGAGTAACTT+AGG | + | chr8.1:33153411-33153430 | MS.gene70013:CDS | 35.0% | |
| CACGATGGACCATAATAAAA+AGG | + | chr8.1:33154948-33154967 | MS.gene70013:intron | 35.0% | |
| CGAATATCTAGAGAAACCAT+TGG | + | chr8.1:33153849-33153868 | MS.gene70013:intron | 35.0% | |
| CGTCATTTGATGAATTCTTC+GGG | - | chr8.1:33153400-33153419 | None:intergenic | 35.0% | |
| GAAAAACGGAAAAGAAACAG+TGG | + | chr8.1:33153452-33153471 | MS.gene70013:CDS | 35.0% | |
| GATAGTGAAGGCAATGTATA+TGG | + | chr8.1:33154604-33154623 | MS.gene70013:intron | 35.0% | |
| GATATCATGGACTTGTGTTT+GGG | + | chr8.1:33154687-33154706 | MS.gene70013:intron | 35.0% | |
| GATTGATATTGAGCTACCAA+AGG | + | chr8.1:33154661-33154680 | MS.gene70013:intron | 35.0% | |
| GGAACTTATTGAAGCAAATG+CGG | + | chr8.1:33155736-33155755 | MS.gene70013:CDS | 35.0% | |
| GTAGGGAAAGGAAAAATACA+AGG | - | chr8.1:33154007-33154026 | None:intergenic | 35.0% | |
| GTCATTTGATGAATTCTTCG+GGG | - | chr8.1:33153399-33153418 | None:intergenic | 35.0% | |
| TATCCTTATCCATCAGGATT+AGG | - | chr8.1:33153506-33153525 | None:intergenic | 35.0% | |
| TCAGGTGCTAACTAATGATA+TGG | + | chr8.1:33154300-33154319 | MS.gene70013:intron | 35.0% | |
| TCTAGAGAAACCATTGGATA+AGG | + | chr8.1:33153855-33153874 | MS.gene70013:intron | 35.0% | |
| TGATATCATGGACTTGTGTT+TGG | + | chr8.1:33154686-33154705 | MS.gene70013:intron | 35.0% | |
| TGTAGGTTTGAACACTAACT+TGG | - | chr8.1:33154921-33154940 | None:intergenic | 35.0% | |
| TTTGTTCATTCCATCTTGTG+AGG | - | chr8.1:33153940-33153959 | None:intergenic | 35.0% | |
| ! | CACTCTTTGTTTGTAACTGT+CGG | + | chr8.1:33154217-33154236 | MS.gene70013:intron | 35.0% |
| ! | GTGACAAAGCTATTTCAATC+AGG | + | chr8.1:33154282-33154301 | MS.gene70013:intron | 35.0% |
| ! | TTGAGTTTTGCCTTATCCAA+TGG | - | chr8.1:33153868-33153887 | None:intergenic | 35.0% |
| ! | TTGGATGCAAAGTTTTCAGA+TGG | - | chr8.1:33153342-33153361 | None:intergenic | 35.0% |
| !! | GATTATTGTAGAGCTTTGGA+AGG | + | chr8.1:33155267-33155286 | MS.gene70013:intron | 35.0% |
| !! | GGAACAAGCTTTGAAGTTTA+AGG | + | chr8.1:33154625-33154644 | MS.gene70013:intron | 35.0% |
| !! | TTTTTCAACGGCATGAAGAA+TGG | - | chr8.1:33153893-33153912 | None:intergenic | 35.0% |
| AAGGATATGCCTGAGATGAA+TGG | + | chr8.1:33153519-33153538 | MS.gene70013:CDS | 40.0% | |
| AATTGTTGTCACCTCATCAG+TGG | - | chr8.1:33154377-33154396 | None:intergenic | 40.0% | |
| ACGCTGTGCAAATTTGATTC+TGG | + | chr8.1:33155715-33155734 | MS.gene70013:CDS | 40.0% | |
| AGTCCATGATATCATCCCTT+TGG | - | chr8.1:33154680-33154699 | None:intergenic | 40.0% | |
| ATACCGTCGTTGTGTTGAAT+TGG | + | chr8.1:33154840-33154859 | MS.gene70013:CDS | 40.0% | |
| ATTGTTGTCACCTCATCAGT+GGG | - | chr8.1:33154376-33154395 | None:intergenic | 40.0% | |
| CAAAGCAATTACGCTTGATG+GGG | + | chr8.1:33153735-33153754 | MS.gene70013:intron | 40.0% | |
| CATGTGTAAACAACTTACCG+TGG | - | chr8.1:33155346-33155365 | None:intergenic | 40.0% | |
| CATTCTTGCTTATTTAGGCG+TGG | + | chr8.1:33153612-33153631 | MS.gene70013:intron | 40.0% | |
| CTACCAAAGGGATGATATCA+TGG | + | chr8.1:33154674-33154693 | MS.gene70013:intron | 40.0% | |
| GGGATATCTAGCACTATTGT+TGG | + | chr8.1:33153755-33153774 | MS.gene70013:intron | 40.0% | |
| GTGGTAAAATTTATGGGAGC+AGG | + | chr8.1:33153820-33153839 | MS.gene70013:intron | 40.0% | |
| TACCAAGGTGATAGATGCAA+AGG | + | chr8.1:33154336-33154355 | MS.gene70013:CDS | 40.0% | |
| TACCGTCGTTGTGTTGAATT+GGG | + | chr8.1:33154841-33154860 | MS.gene70013:CDS | 40.0% | |
| TATGGAAGAGGAGGAAATAG+TGG | + | chr8.1:33153801-33153820 | MS.gene70013:intron | 40.0% | |
| TCATTCCATCTTGTGAGGAA+TGG | - | chr8.1:33153935-33153954 | None:intergenic | 40.0% | |
| TGATGTTCCGCAGAAAAAGT+CGG | + | chr8.1:33154562-33154581 | MS.gene70013:intron | 40.0% | |
| TGCGGAACATCAACTTTCAT+AGG | - | chr8.1:33154554-33154573 | None:intergenic | 40.0% | |
| TGTGTTGAATTGGGCAAAAG+TGG | + | chr8.1:33154850-33154869 | MS.gene70013:CDS | 40.0% | |
| ! | AACATCGTACAATGGTGTTG+TGG | + | chr8.1:33155528-33155547 | MS.gene70013:intron | 40.0% |
| ! | AATTAATCCCAAGAAGCGTG+AGG | + | chr8.1:33155108-33155127 | MS.gene70013:CDS | 40.0% |
| ! | GACAACAAGTGCTGTTAACT+TGG | - | chr8.1:33153361-33153380 | None:intergenic | 40.0% |
| ! | TGACCTAATCCTGATGGATA+AGG | + | chr8.1:33153500-33153519 | MS.gene70013:CDS | 40.0% |
| !! | ACAATGGTGTTGTGGATTCA+TGG | + | chr8.1:33155536-33155555 | MS.gene70013:intron | 40.0% |
| !! | ATAGGTTCCGACTTTTTCTG+CGG | - | chr8.1:33154572-33154591 | None:intergenic | 40.0% |
| !! | GTCCATCGTGTTTTGAATGT+AGG | - | chr8.1:33154938-33154957 | None:intergenic | 40.0% |
| AAAGGTTACCTCACGCTTCT+TGG | - | chr8.1:33155119-33155138 | None:intergenic | 45.0% | |
| AAGGTTACCTCACGCTTCTT+GGG | - | chr8.1:33155118-33155137 | None:intergenic | 45.0% | |
| ACAGTCACACTCTATGGAAG+AGG | + | chr8.1:33153789-33153808 | MS.gene70013:intron | 45.0% | |
| ACAGTGGAAATTCGTCAGCA+TGG | + | chr8.1:33153468-33153487 | MS.gene70013:CDS | 45.0% | |
| ACCTCAGTTCCATTCATCTC+AGG | - | chr8.1:33153531-33153550 | None:intergenic | 45.0% | |
| AGCCTTTGCATCTATCACCT+TGG | - | chr8.1:33154341-33154360 | None:intergenic | 45.0% | |
| CAGGCATATCCTTATCCATC+AGG | - | chr8.1:33153512-33153531 | None:intergenic | 45.0% | |
| GGATTCAACTCCCTTGCAAA+AGG | + | chr8.1:33155670-33155689 | MS.gene70013:CDS | 45.0% | |
| TGAGGTGACAACAATTGCTG+AGG | + | chr8.1:33154381-33154400 | MS.gene70013:CDS | 45.0% | |
| TGCCCAATTCAACACAACGA+CGG | - | chr8.1:33154846-33154865 | None:intergenic | 45.0% | |
| TTGGGCAAAAGTGGCATGTA+CGG | + | chr8.1:33154859-33154878 | MS.gene70013:CDS | 45.0% | |
| !! | GCACTTGTTGTCGATGATGA+TGG | + | chr8.1:33153369-33153388 | MS.gene70013:CDS | 45.0% |
| !! | TATATATAAATGTAAAAATT+GGG | - | chr8.1:33153574-33153593 | None:intergenic | 5.0% |
| !! | TTATATATAAATGTAAAAAT+TGG | - | chr8.1:33153575-33153594 | None:intergenic | 5.0% |
| AACTGCCAGTGACGACTACA+AGG | - | chr8.1:33155082-33155101 | None:intergenic | 50.0% | |
| AATGCCCTTGTAGTCGTCAC+TGG | + | chr8.1:33155074-33155093 | MS.gene70013:intron | 50.0% | |
| ACTGCCAGTGACGACTACAA+GGG | - | chr8.1:33155081-33155100 | None:intergenic | 50.0% | |
| CCATAGAGTGTGACTGTGTG+AGG | - | chr8.1:33153786-33153805 | None:intergenic | 50.0% | |
| CCTCACACAGTCACACTCTA+TGG | + | chr8.1:33153783-33153802 | MS.gene70013:intron | 50.0% | |
| GCCTGAGATGAATGGAACTG+AGG | + | chr8.1:33153527-33153546 | MS.gene70013:CDS | 50.0% | |
| GGTTAGAGTGGCTGTTACCA+AGG | + | chr8.1:33154321-33154340 | MS.gene70013:CDS | 50.0% | |
| GTCACACTCTATGGAAGAGG+AGG | + | chr8.1:33153792-33153811 | MS.gene70013:intron | 50.0% | |
| !! | CAATCGGTTTGTTACGCGAG+CGG | + | chr8.1:33155480-33155499 | MS.gene70013:intron | 50.0% |
| AGTACCTGTGCCCACTGATG+AGG | + | chr8.1:33154363-33154382 | MS.gene70013:CDS | 55.0% | |
| GTCACCTCATCAGTGGGCAC+AGG | - | chr8.1:33154370-33154389 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 33153330 | 33155769 | 33153330 | ID=MS.gene70013 |
| chr8.1 | mRNA | 33153330 | 33155769 | 33153330 | ID=MS.gene70013.t1;Parent=MS.gene70013 |
| chr8.1 | exon | 33153330 | 33153548 | 33153330 | ID=MS.gene70013.t1.exon1;Parent=MS.gene70013.t1 |
| chr8.1 | CDS | 33153330 | 33153548 | 33153330 | ID=cds.MS.gene70013.t1;Parent=MS.gene70013.t1 |
| chr8.1 | exon | 33154304 | 33154458 | 33154304 | ID=MS.gene70013.t1.exon2;Parent=MS.gene70013.t1 |
| chr8.1 | CDS | 33154304 | 33154458 | 33154304 | ID=cds.MS.gene70013.t1;Parent=MS.gene70013.t1 |
| chr8.1 | exon | 33154834 | 33154921 | 33154834 | ID=MS.gene70013.t1.exon3;Parent=MS.gene70013.t1 |
| chr8.1 | CDS | 33154834 | 33154921 | 33154834 | ID=cds.MS.gene70013.t1;Parent=MS.gene70013.t1 |
| chr8.1 | exon | 33155100 | 33155194 | 33155100 | ID=MS.gene70013.t1.exon4;Parent=MS.gene70013.t1 |
| chr8.1 | CDS | 33155100 | 33155194 | 33155100 | ID=cds.MS.gene70013.t1;Parent=MS.gene70013.t1 |
| chr8.1 | exon | 33155278 | 33155308 | 33155278 | ID=MS.gene70013.t1.exon5;Parent=MS.gene70013.t1 |
| chr8.1 | CDS | 33155278 | 33155308 | 33155278 | ID=cds.MS.gene70013.t1;Parent=MS.gene70013.t1 |
| chr8.1 | exon | 33155662 | 33155769 | 33155662 | ID=MS.gene70013.t1.exon6;Parent=MS.gene70013.t1 |
| chr8.1 | CDS | 33155662 | 33155769 | 33155662 | ID=cds.MS.gene70013.t1;Parent=MS.gene70013.t1 |
| Gene Sequence |
| Protein sequence |
