AlfalfaGEDB | MS.gene70138

M. sativa cultivar XinJiangDaYe / MS.gene70138

KEGG: K09422
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70138.t1	XP_003630424.1	87.7	316	35	2	1	316	1	312	3.60E-117	431.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70138.t1	Q9SZP1	82.0	133	24	0	1	133	1	133	1.0e-64	248.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70138.t1	G7LGH2	87.7	316	35	2	1	316	1	312	2.6e-117	431.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene70138.t1	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70138.t1	MTR_8g095390	89.557	316	29	2	1	316	1	312	6.19e-174	484
MS.gene70138.t1	MTR_3g097450	49.026	308	98	7	1	282	1	275	7.31e-89	268
MS.gene70138.t1	MTR_4g073420	47.022	319	124	9	1	312	1	281	3.21e-86	261
MS.gene70138.t1	MTR_5g079670	61.644	146	51	1	3	148	2	142	8.83e-66	206
MS.gene70138.t1	MTR_7g110830	57.862	159	67	0	1	159	1	159	1.16e-64	208
MS.gene70138.t1	MTR_4g105130	42.629	251	118	3	1	225	1	251	2.57e-64	207
MS.gene70138.t1	MTR_7g076740	65.672	134	45	1	1	133	1	134	3.28e-64	205
MS.gene70138.t1	MTR_1g085040	68.217	129	41	0	1	129	1	129	8.04e-64	206
MS.gene70138.t1	MTR_1g085640	52.247	178	78	1	1	178	1	171	1.51e-63	206
MS.gene70138.t1	MTR_4g091490	66.667	129	42	1	1	128	1	129	2.71e-63	204

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70138.t1	AT4G38620	76.510	149	34	1	1	149	1	148	7.89e-82	249
MS.gene70138.t1	AT2G16720	82.171	129	23	0	1	129	1	129	8.97e-81	246
MS.gene70138.t1	AT4G09460	63.483	178	50	2	1	176	1	165	2.07e-78	239
MS.gene70138.t1	AT4G34990	67.296	159	44	1	1	159	1	151	3.91e-78	239
MS.gene70138.t1	AT1G22640	80.315	127	25	0	1	127	1	127	2.25e-77	237
MS.gene70138.t1	AT1G35515	78.571	126	27	0	1	126	1	126	7.29e-74	226
MS.gene70138.t1	AT4G12350	49.495	198	90	2	1	198	1	188	2.26e-66	210
MS.gene70138.t1	AT5G26660	60.248	161	61	1	1	161	1	158	5.79e-66	211
MS.gene70138.t1	AT5G16770	67.188	128	42	0	1	128	1	128	1.19e-65	209
MS.gene70138.t1	AT5G16770	67.188	128	42	0	1	128	1	128	1.19e-65	209

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Find 78 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCATTCCCGACGCCGG+TGG	0.648900	4.1:+7395742	None:intergenic
AAACAAAGGTGCTTGGTCCA+AGG	0.588189	4.1:-7396918	MS.gene70138:CDS
AAACGCAAACTCTATAGCCG+TGG	0.599125	4.1:-7396304	MS.gene70138:CDS
AAACTTGACAATCCCGGCCC+CGG	0.577725	4.1:+7395709	None:intergenic
AACAACAAGGTGAAGGTTGC+TGG	0.363863	4.1:-7396865	MS.gene70138:CDS
AACACACAAACAAAGGTGCT+TGG	0.551791	4.1:-7396925	MS.gene70138:CDS
AACACAGGCTTGGCAAGATG+TGG	0.575098	4.1:-7396713	MS.gene70138:intron
AAGCGGCAGCGGCGCCGGAG+AGG	0.551698	4.1:+7396248	None:intergenic
AAGGCGTTCATCTTCTTCCT+TGG	0.409969	4.1:+7396901	None:intergenic
AAGTTTCCACGTTTAAGATC+AGG	0.434602	4.1:+7396653	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCAACTTGGAACTTTCAT+TGG	-	chr4.1:7396729-7396748	MS.gene70138:intron	30.0%
ACAATGAGATCAAGAACTAT+TGG	-	chr4.1:7396320-7396339	MS.gene70138:CDS	30.0%
CAGTTATTCAGTAATTTCAG+TGG	-	chr4.1:7396595-7396614	MS.gene70138:intron	30.0%
CTTTGTCGTCAAATATCTTT+AGG	-	chr4.1:7396796-7396815	MS.gene70138:intron	30.0%
GAAAAACAACACACAAACAA+AGG	-	chr4.1:7395727-7395746	MS.gene70138:CDS	30.0%
AATAATACCATGCCTATCGT+TGG	-	chr4.1:7396853-7396872	MS.gene70138:CDS	35.0%
ACTCACTCTTAATCTTGTTG+TGG	+	chr4.1:7396573-7396592	None:intergenic	35.0%
AGGATAAGCTATATCCTCAA+CGG	+	chr4.1:7396704-7396723	None:intergenic	35.0%
ATGCATGTTTACTACAACAC+AGG	-	chr4.1:7395931-7395950	MS.gene70138:CDS	35.0%
ATGGTATTATTGCAGCAACA+AGG	+	chr4.1:7396844-7396863	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	7395706	7396975	7395706	ID=MS.gene70138
chr4.1	mRNA	7395706	7396975	7395706	ID=MS.gene70138.t1;Parent=MS.gene70138
chr4.1	exon	7396843	7396975	7396843	ID=MS.gene70138.t1.exon1;Parent=MS.gene70138.t1
chr4.1	CDS	7396843	7396975	7396843	ID=cds.MS.gene70138.t1;Parent=MS.gene70138.t1
chr4.1	exon	7396599	7396728	7396599	ID=MS.gene70138.t1.exon2;Parent=MS.gene70138.t1
chr4.1	CDS	7396599	7396728	7396599	ID=cds.MS.gene70138.t1;Parent=MS.gene70138.t1
chr4.1	exon	7395706	7396399	7395706	ID=MS.gene70138.t1.exon3;Parent=MS.gene70138.t1
chr4.1	CDS	7395706	7396399	7395706	ID=cds.MS.gene70138.t1;Parent=MS.gene70138.t1

Gene Sequence

>MS.gene70138

ATGGGTAGATCTCCTTGCTGTGAAAAACAACACACAAACAAAGGTGCTTGGTCCAAGGAAGAAGATGAACGCCTTATTAACTACATCAAACAACAAGGTGAAGGTTGCTGGCGTTCTCTTCCTAAAGCCGCAGGTATATATTAATATTATTACACGTTTGTTTAACTATTTCATTTCATCATTTCCCACCCACAATCCGTTTATTCATTTTGCTTAATTATTTTTATGCATGTTTACTACAACACAGGCTTGGCAAGATGTGGAAAAAGCTGTAGATTGAGATGGATCAATTATCTCAGACCTGATCTTAAACGTGGAAACTTCACTCACGAGGAAGATGAACTTATCATTAGCCTCCACGCTATGGTTGGAAACAAGTATGTATATATATTCTTTCTCAAATTAAATTTATTTTTCTCGTTCATTTTCATCTTTCATATTTTCCCAAAAATCATATTCTATCAAATACTATAATTCATGATTTCTTGTAGTTAAGTTTTTATATATATATATGTACTCCTTCATGTAATTCTGTAATCATTTACTTGTTATTAATTGATTATGTTTTGTTTTCAGATGGTCTCAGATTGCTCAAAAATTGCCCGGAAGAACAGACAATGAGATCAAGAACTATTGGAACACTCACATAAAACGCAAACTCTATAGCCGTGGAATTGATCCTACAACACATCAGCCACTCAAAACCCTCTCCGGCGCCGCTGCCGCTTCAGCCGGTACTTCCTCAGCAACAACCACCTCTGCAGAAGCTGCTTCTCCTTCAATGGTTGTTAATAATAATTCATCCGTATTACCTGTAGTACCCTCAACCAACGAGAGCAGTACTAGTAGCAGCATGAGCCACCACCACAACAAGATTAAGAGTGAGTTTCAGTTATTCAGTAATTTCAGTGGCTCTCGGCTTAAAAAGTTTGTTGCAACTGATTCTGTCCATGGTGGTGTCGAAGAATCAGTTTCAAACAGTAGCAGTGGTGTTACCGTTGAGGATATAGCTTATCCTCCTCCAATCAACTTGGAACTTTCATTGGCTATATCCTCTCCCTCTCAACAGCCACAGCAAAAAGCTTTGTGTCTTTGTCGTCAAATATCTTTAGGGTTACATGGTAGTAGCCACCAACCTTGTTGCTGCAATAATACCATGCCTATCGTTGGTGTTTCAACTTCTTATGCTGTTACTGCTCCACCACCTGCTACCACCGGCGTCGGGAATGGTTTTTTCAAATTTTCCGGGGCCGGGATTGTCAAGTTTTGA

Protein sequence

>MS.gene70138.t1

MGRSPCCEKQHTNKGAWSKEEDERLINYIKQQGEGCWRSLPKAAGLARCGKSCRLRWINYLRPDLKRGNFTHEEDELIISLHAMVGNKWSQIAQKLPGRTDNEIKNYWNTHIKRKLYSRGIDPTTHQPLKTLSGAAAASAGTSSATTTSAEAASPSMVVNNNSSVLPVVPSTNESSTSSSMSHHHNKIKSEFQLFSNFSGSRLKKFVATDSVHGGVEESVSNSSSGVTVEDIAYPPPINLELSLAISSPSQQPQQKALCLCRQISLGLHGSSHQPCCCNNTMPIVGVSTSYAVTAPPPATTGVGNGFFKFSGAGIVKF