AlfalfaGEDB | MS.gene70213

M. sativa cultivar XinJiangDaYe / MS.gene70213

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70213.t1	XP_003630281.1	96.3	54	2	0	1	54	2	55	3.00E-23	117.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70213.t1	Q8GWK6	64.6	48	16	1	7	53	1	48	6.0e-12	70.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70213.t1	G7LE35	96.3	54	2	0	1	54	2	55	2.2e-23	117.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene70213.t1	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70213.t1	MTR_8g093790	94.545	55	3	0	1	55	2	56	4.62e-33	111
MS.gene70213.t1	MTR_4g094302	65.217	46	15	1	9	53	11	56	7.29e-14	62.0
MS.gene70213.t1	MTR_4g094302	53.571	56	25	1	9	63	11	66	9.88e-14	62.4
MS.gene70213.t1	MTR_3g096400	60.000	50	18	1	6	53	4	53	8.12e-13	60.1
MS.gene70213.t1	MTR_4g081870	53.704	54	24	1	1	53	1	54	7.66e-12	58.2
MS.gene70213.t1	MTR_8g099750	53.191	47	21	1	8	53	13	59	1.03e-11	57.4
MS.gene70213.t1	MTR_7g005280	51.852	54	25	1	7	59	13	66	1.66e-11	57.0
MS.gene70213.t1	MTR_3g098810	55.319	47	20	1	8	53	13	59	3.09e-11	55.5
MS.gene70213.t1	MTR_3g098810	55.319	47	20	1	8	53	13	59	3.69e-11	56.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70213.t1	AT5G64530	64.583	48	16	1	7	53	1	48	1.83e-15	66.2
MS.gene70213.t1	AT5G64530	64.583	48	16	1	7	53	1	48	2.52e-15	66.2

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Find 16 sgRNAs with CRISPR-Local

Find 46 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACTTGTCTCACCATGATCCT+TGG	0.405810	4.1:+8301688	MS.gene70213:CDS
AGCAGCGTGAAGCTTCCTCC+TGG	0.455992	4.1:+8301570	MS.gene70213:CDS
AGGACTAGTTCTTCATCCGT+TGG	0.520052	4.1:-8301606	None:intergenic
ATGATATGGTAAAGAAGCCT+TGG	0.489756	4.1:-8301643	None:intergenic
CATGATCCTTGGGAAATATA+CGG	0.400748	4.1:+8301699	MS.gene70213:CDS
CCTTGGAATAGAGAAAATGA+AGG	0.572117	4.1:-8301626	None:intergenic
CGTATATTTCCCAAGGATCA+TGG	0.491411	4.1:-8301698	None:intergenic
CTTACTTTCTAGCTGAATTT+TGG	0.160392	4.1:-8301918	None:intergenic
CTTGTCTCACCATGATCCTT+GGG	0.421667	4.1:+8301689	MS.gene70213:CDS
GACATACCGTATATTTCCCA+AGG	0.621341	4.1:-8301705	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCGTACTCTTTATAGTTG+TGG	+	chr4.1:8302262-8302281	MS.gene70213:intron	30.0%
ATATACATGCCTTTGTAAAC+AGG	+	chr4.1:8302310-8302329	MS.gene70213:intron	30.0%
ATTCAATGATCGATTAATCC+CGG	+	chr4.1:8302107-8302126	MS.gene70213:intron	30.0%
ATTGATCAAGTGACATATAC+TGG	+	chr4.1:8301780-8301799	MS.gene70213:intron	30.0%
AAGGCATGTATATTTCTTGG+GGG	-	chr4.1:8302303-8302322	None:intergenic	35.0%
ACGGTATGTCTTATAGTACT+AGG	+	chr4.1:8301718-8301737	MS.gene70213:intron	35.0%
ATGATATGGTAAAGAAGCCT+TGG	-	chr4.1:8301646-8301665	None:intergenic	35.0%
CATGATCCTTGGGAAATATA+CGG	+	chr4.1:8301699-8301718	MS.gene70213:CDS	35.0%
CCTTGGAATAGAGAAAATGA+AGG	-	chr4.1:8301629-8301648	None:intergenic	35.0%
CGTATATTTCCCAAGGATCA+TGG	-	chr4.1:8301701-8301720	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	8301558	8302335	8301558	ID=MS.gene70213
chr4.1	mRNA	8301558	8302335	8301558	ID=MS.gene70213.t1;Parent=MS.gene70213
chr4.1	exon	8301558	8301720	8301558	ID=MS.gene70213.t1.exon1;Parent=MS.gene70213.t1
chr4.1	CDS	8301558	8301720	8301558	ID=cds.MS.gene70213.t1;Parent=MS.gene70213.t1
chr4.1	exon	8301908	8301935	8301908	ID=MS.gene70213.t1.exon2;Parent=MS.gene70213.t1
chr4.1	CDS	8301908	8301935	8301908	ID=cds.MS.gene70213.t1;Parent=MS.gene70213.t1
chr4.1	exon	8302332	8302335	8302332	ID=MS.gene70213.t1.exon3;Parent=MS.gene70213.t1
chr4.1	CDS	8302332	8302335	8302332	ID=cds.MS.gene70213.t1;Parent=MS.gene70213.t1

Gene Sequence

>MS.gene70213

ATGGGGAGTGAAAGCAGCGTGAAGCTTCCTCCTGGGTTTTACTTTGATCCAACGGATGAAGAACTAGTCCTTCATTTTCTCTATTCCAAGGCTTCTTTACCATATCATCCTAGCATCATACCTGAACTTCACTTGTCTCACCATGATCCTTGGGAAATATACGGTATGTCTTATAGTACTAGGTATATTATATATATTTCATATAATATTTTCAATTTCAATATTGATCAAGTGACATATACTGGATATTTAGTTGACCATATATGCATGCATATATAGATAAAACTTCATTCCTATATATATAATACCAATTTATTTTGTCTTAACACTTTGATTCTCATTAAAATTAGCTCTCATAGTCCAAAATTCAGCTAGAAAGTAAGTAATAAAAATCTAACAAAAAGATATTCTAAATACCATCTAAATTGGGATACTCTCAATCATTTCGACCTTAACATATGTTATTGCTAATAAGTTTGTGATATATGTAATCTTCAGCCAAAATTCAATTATATGCTATGAGATTTTTTCTTTTAAAATAGAATATGGATTCAATGATCGATTAATCCCGGACCAATCTCACCATCCATCACTTATAGATTAATTATATATCAAATTTTTATCTAAAATCCGGGTAAAAAAATAAAATAAATATACGTTATTTGTAGAAAATTATCCAAAATTTATGTAAAACCTATCTGAAAAATCGTACTCTTTATAGTTGTGGATGTGTATAATAACACCCCCAAGAAATATACATGCCTTTGTAAACAGGTAA

Protein sequence

>MS.gene70213.t1

MGSESSVKLPPGFYFDPTDEELVLHFLYSKASLPYHPSIIPELHLSHHDPWEIYALIVQNSARK