Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70242.t1 | XP_003630218.2 | 94.8 | 305 | 14 | 1 | 1 | 305 | 1 | 303 | 1.90E-115 | 425.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70242.t1 | Q9ASQ2 | 47.7 | 241 | 115 | 3 | 68 | 301 | 70 | 306 | 5.3e-50 | 199.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70242.t1 | A0A0C3Y601 | 94.8 | 305 | 14 | 1 | 1 | 305 | 1 | 303 | 1.4e-115 | 425.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene70242.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70242.t1 | MTR_8g093080 | 95.738 | 305 | 11 | 1 | 1 | 305 | 1 | 303 | 0.0 | 587 |
| MS.gene70242.t1 | MTR_3g114060 | 30.660 | 212 | 93 | 3 | 139 | 302 | 128 | 333 | 9.06e-23 | 96.7 |
| MS.gene70242.t1 | MTR_3g113680 | 30.702 | 228 | 98 | 4 | 132 | 302 | 428 | 652 | 1.24e-22 | 98.6 |
| MS.gene70242.t1 | MTR_7g109430 | 31.140 | 228 | 97 | 4 | 132 | 302 | 428 | 652 | 1.89e-22 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70242.t1 | AT5G45420 | 51.553 | 322 | 119 | 10 | 1 | 301 | 1 | 306 | 1.54e-82 | 251 |
| MS.gene70242.t1 | AT5G45420 | 51.553 | 322 | 119 | 10 | 1 | 301 | 1 | 306 | 1.54e-82 | 251 |
| MS.gene70242.t1 | AT5G45420 | 51.553 | 322 | 119 | 10 | 1 | 301 | 1 | 306 | 1.54e-82 | 251 |
| MS.gene70242.t1 | AT3G11450 | 34.615 | 182 | 80 | 3 | 159 | 302 | 466 | 646 | 6.76e-22 | 96.3 |
| MS.gene70242.t1 | AT5G06110 | 30.732 | 205 | 97 | 4 | 140 | 300 | 457 | 660 | 7.54e-19 | 87.4 |
| MS.gene70242.t1 | AT5G06110 | 30.732 | 205 | 97 | 4 | 140 | 300 | 457 | 660 | 7.54e-19 | 87.4 |
Find 96 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACGATTTCGTTGGTTTC+TGG | 0.174909 | 4.1:-8686864 | None:intergenic |
| AAAGTTGCTGCTGCTGTTCC+TGG | 0.293700 | 4.1:+8687597 | MS.gene70242:CDS |
| TCGGTTGAGGTTTCCTGATC+GGG | 0.354119 | 4.1:-8687066 | None:intergenic |
| GTGAGAAAGTTGAAAGTGTT+TGG | 0.354834 | 4.1:+8687502 | MS.gene70242:CDS |
| CAGAATTGAAGAAAGGGTTT+CGG | 0.376978 | 4.1:+8687652 | MS.gene70242:CDS |
| TGCATTGTCGGCGGCGGTGG+TGG | 0.384974 | 4.1:+8687218 | MS.gene70242:CDS |
| GGGTTTCGGACTGCAAAATC+TGG | 0.390024 | 4.1:+8687666 | MS.gene70242:CDS |
| TTTGCATTCTCTCTCCTCCT+TGG | 0.398248 | 4.1:+8686976 | MS.gene70242:CDS |
| TCGCCGCCGGTGATGGAGAT+TGG | 0.407288 | 4.1:-8687009 | None:intergenic |
| TTGAAGAATCGAAATGGAAA+TGG | 0.409406 | 4.1:+8687186 | MS.gene70242:CDS |
| CATCTCATAGCAACATCTTT+CGG | 0.412166 | 4.1:-8687570 | None:intergenic |
| AAAGGAGTTGGGAGAGAAGA+AGG | 0.421544 | 4.1:+8687389 | MS.gene70242:CDS |
| AGAGAAGAAGGTTGATGATT+CGG | 0.423910 | 4.1:+8687401 | MS.gene70242:CDS |
| GATAAGAGACTTGTTGAAGA+AGG | 0.424391 | 4.1:+8687462 | MS.gene70242:CDS |
| GTCGGCGGCGGTGGTGGAGG+AGG | 0.424999 | 4.1:+8687224 | MS.gene70242:CDS |
| TGTTGCATTGTCGGCGGCGG+TGG | 0.428265 | 4.1:+8687215 | MS.gene70242:CDS |
| CGGGTGCACCGGACTGATAC+AGG | 0.433545 | 4.1:-8686819 | None:intergenic |
| ATTGTCGGCGGCGGTGGTGG+AGG | 0.433697 | 4.1:+8687221 | MS.gene70242:CDS |
| TGGAAACGGTGTTGCATTGT+CGG | 0.435353 | 4.1:+8687206 | MS.gene70242:CDS |
| TGCCGTCAATTTCCCCGATC+AGG | 0.438106 | 4.1:+8687053 | MS.gene70242:CDS |
| ATCATCCGATCTGCGTTGCT+TGG | 0.438785 | 4.1:-8687127 | None:intergenic |
| GGCGGCGGTGGTGGAGGAGG+AGG | 0.446195 | 4.1:+8687227 | MS.gene70242:CDS |
| AGAATTGCAGAATTGAAGAA+AGG | 0.450045 | 4.1:+8687645 | MS.gene70242:CDS |
| ATCGGTTGAGGTTTCCTGAT+CGG | 0.454293 | 4.1:-8687067 | None:intergenic |
| GAGGCGATAGCGGAGGCATT+CGG | 0.458797 | 4.1:+8687330 | MS.gene70242:CDS |
| GATTTCGTTGGTTTCTGGTA+AGG | 0.461575 | 4.1:-8686859 | None:intergenic |
| TTCAGTGGCCGCGGGTGCAC+CGG | 0.461986 | 4.1:-8686830 | None:intergenic |
| CGAAAGATGTTGCTATGAGA+TGG | 0.463082 | 4.1:+8687571 | MS.gene70242:CDS |
| TGGAGGAGGAGGAGAAGGAA+TGG | 0.463216 | 4.1:+8687238 | MS.gene70242:CDS |
| GTTTCGTTGAAGAATCGAAA+TGG | 0.464225 | 4.1:+8687180 | MS.gene70242:CDS |
| CAACCGATGAGGATGATTCC+AGG | 0.465520 | 4.1:+8687082 | MS.gene70242:CDS |
| GGCGATTCCCGTGTCGGCCG+TGG | 0.468929 | 4.1:+8687027 | MS.gene70242:CDS |
| GGAATCATCCTCATCGGTTG+AGG | 0.470477 | 4.1:-8687079 | None:intergenic |
| TCGATTTGAGCGGTTCAGAT+TGG | 0.470526 | 4.1:-8686942 | None:intergenic |
| AGGCTGTGATTCAGTGGCCG+CGG | 0.476901 | 4.1:-8686839 | None:intergenic |
| CGGCATGACCACGGCCGACA+CGG | 0.478990 | 4.1:-8687035 | None:intergenic |
| TTCAACGAAACCACCGGCGC+TGG | 0.480043 | 4.1:-8687168 | None:intergenic |
| GGCATGACCACGGCCGACAC+GGG | 0.485981 | 4.1:-8687034 | None:intergenic |
| ACGGGAATCGCCGCCGGTGA+TGG | 0.488045 | 4.1:-8687016 | None:intergenic |
| GGTGGTGGAGGAGGAGGAGA+AGG | 0.492408 | 4.1:+8687233 | MS.gene70242:CDS |
| AAGAGACTTGTTGAAGAAGG+AGG | 0.496476 | 4.1:+8687465 | MS.gene70242:CDS |
| TCCCACCGTCCTGGTTTCCC+CGG | 0.499822 | 4.1:-8687309 | None:intergenic |
| GAAGATTGAAGAGATTGAAA+CGG | 0.500067 | 4.1:-8686896 | None:intergenic |
| GGCTGTGATTCAGTGGCCGC+GGG | 0.502205 | 4.1:-8686838 | None:intergenic |
| GAATTGCAGAATTGAAGAAA+GGG | 0.503367 | 4.1:+8687646 | MS.gene70242:CDS |
| CAAGCTGCTTTCGATTTCCC+AGG | 0.506123 | 4.1:-8687615 | None:intergenic |
| GCCGACACGGGAATCGCCGC+CGG | 0.510103 | 4.1:-8687022 | None:intergenic |
| CACCGTCCTGGTTTCCCCGG+TGG | 0.513685 | 4.1:-8687306 | None:intergenic |
| GGTGAAGAAATCAAAGGAGT+TGG | 0.518193 | 4.1:+8687377 | MS.gene70242:CDS |
| CGGTGTTGCATTGTCGGCGG+CGG | 0.518420 | 4.1:+8687212 | MS.gene70242:CDS |
| GTGAAGAAATCAAAGGAGTT+GGG | 0.518866 | 4.1:+8687378 | MS.gene70242:CDS |
| CGATTCTTCAACGAAACCAC+CGG | 0.522401 | 4.1:-8687174 | None:intergenic |
| GAAGGAGGAGATTTAGCGAC+GGG | 0.533839 | 4.1:+8687480 | MS.gene70242:CDS |
| TCTGAAGAAGAGAAAAGCGT+TGG | 0.535242 | 4.1:+8687440 | MS.gene70242:CDS |
| GCTATCGCCTCCCACCGTCC+TGG | 0.536007 | 4.1:-8687318 | None:intergenic |
| ACCGGCGGCGATTCCCGTGT+CGG | 0.539059 | 4.1:+8687021 | MS.gene70242:CDS |
| CTCTGTAGTAGCTCCAGCGC+CGG | 0.539400 | 4.1:+8687155 | MS.gene70242:CDS |
| AATCGAAATGGAAATGGAAA+CGG | 0.539438 | 4.1:+8687192 | MS.gene70242:CDS |
| TTTCCTGGAATCATCCTCAT+CGG | 0.539989 | 4.1:-8687085 | None:intergenic |
| AGGACGGTGGGAGGCGATAG+CGG | 0.545275 | 4.1:+8687320 | MS.gene70242:CDS |
| GGGGAAACCAGGACGGTGGG+AGG | 0.546154 | 4.1:+8687311 | MS.gene70242:CDS |
| AAGTTGCTGCTGCTGTTCCT+GGG | 0.554829 | 4.1:+8687598 | MS.gene70242:CDS |
| CAGATCCAAGCAACGCAGAT+CGG | 0.555740 | 4.1:+8687122 | MS.gene70242:CDS |
| ACCGGGGAAACCAGGACGGT+GGG | 0.559178 | 4.1:+8687308 | MS.gene70242:CDS |
| CCGAAGTTCCTGTATCAGTC+CGG | 0.563162 | 4.1:+8686811 | MS.gene70242:CDS |
| GGCATTCGGAGGGCGTCACA+AGG | 0.566101 | 4.1:+8687344 | MS.gene70242:CDS |
| GAAAGATGTTGCTATGAGAT+GGG | 0.567305 | 4.1:+8687572 | MS.gene70242:CDS |
| CTGGTAAGGCTGTGATTCAG+TGG | 0.573589 | 4.1:-8686845 | None:intergenic |
| CCGGACTGATACAGGAACTT+CGG | 0.574834 | 4.1:-8686811 | None:intergenic |
| TGTAGTAGCTCCAGCGCCGG+TGG | 0.575392 | 4.1:+8687158 | MS.gene70242:CDS |
| CACCGGGGAAACCAGGACGG+TGG | 0.578167 | 4.1:+8687307 | MS.gene70242:CDS |
| TTCCTGATCGGGGAAATTGA+CGG | 0.583685 | 4.1:-8687055 | None:intergenic |
| GCGATAGCGGAGGCATTCGG+AGG | 0.585439 | 4.1:+8687333 | MS.gene70242:CDS |
| GGAAATTGACGGCATGACCA+CGG | 0.588936 | 4.1:-8687044 | None:intergenic |
| TTCGCTCCAATCTCCATCAC+CGG | 0.592700 | 4.1:+8687003 | MS.gene70242:CDS |
| GTATCAGTCCGGTGCACCCG+CGG | 0.599158 | 4.1:+8686822 | MS.gene70242:CDS |
| GCGTCACAAGGTGGAAAGCG+TGG | 0.605173 | 4.1:+8687356 | MS.gene70242:CDS |
| GTGATGGAGATTGGAGCGAA+AGG | 0.606633 | 4.1:-8687000 | None:intergenic |
| ACAGCGATGAACGATTTCGT+TGG | 0.617295 | 4.1:-8686871 | None:intergenic |
| TGAGATTCTGAAGAAACAGA+TGG | 0.629866 | 4.1:+8687275 | MS.gene70242:CDS |
| CGGTTGAGGTTTCCTGATCG+GGG | 0.631525 | 4.1:-8687065 | None:intergenic |
| ATCCACCGGGGAAACCAGGA+CGG | 0.634948 | 4.1:+8687304 | MS.gene70242:CDS |
| AAGTGTTTGGAGTTCAAACG+AGG | 0.645478 | 4.1:+8687515 | MS.gene70242:CDS |
| AGAAGGAGGAGATTTAGCGA+CGG | 0.648578 | 4.1:+8687479 | MS.gene70242:CDS |
| CGGCGCTGGAGCTACTACAG+AGG | 0.650195 | 4.1:-8687154 | None:intergenic |
| CGATAGCGGAGGCATTCGGA+GGG | 0.653736 | 4.1:+8687334 | MS.gene70242:CDS |
| ACGGTGGGAGGCGATAGCGG+AGG | 0.665574 | 4.1:+8687323 | MS.gene70242:CDS |
| GCTCCAATCTCCATCACCGG+CGG | 0.666192 | 4.1:+8687006 | MS.gene70242:CDS |
| AAGCGTGGTGAAGAAATCAA+AGG | 0.666488 | 4.1:+8687371 | MS.gene70242:CDS |
| AAACGGTGTTGCATTGTCGG+CGG | 0.669146 | 4.1:+8687209 | MS.gene70242:CDS |
| TCAGGAAACCTCAACCGATG+AGG | 0.671357 | 4.1:+8687071 | MS.gene70242:CDS |
| AGATTGGAGCGAAAGGACCA+AGG | 0.675323 | 4.1:-8686993 | None:intergenic |
| ATTCGGAGGGCGTCACAAGG+TGG | 0.679939 | 4.1:+8687347 | MS.gene70242:CDS |
| CAGATGAAAATCGATTTGAG+CGG | 0.706129 | 4.1:-8686952 | None:intergenic |
| TTGGAGCGAAAGGACCAAGG+AGG | 0.738797 | 4.1:-8686990 | None:intergenic |
| GGAGAAGGAATGGAACGACG+AGG | 0.745135 | 4.1:+8687248 | MS.gene70242:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AATCGAAATGGAAATGGAAA+CGG | + | chr4.1:8687192-8687211 | MS.gene70242:CDS | 30.0% | |
| AGAATTGCAGAATTGAAGAA+AGG | + | chr4.1:8687645-8687664 | MS.gene70242:CDS | 30.0% | |
| GAAGATTGAAGAGATTGAAA+CGG | - | chr4.1:8686899-8686918 | None:intergenic | 30.0% | |
| GAATTGCAGAATTGAAGAAA+GGG | + | chr4.1:8687646-8687665 | MS.gene70242:CDS | 30.0% | |
| TTGAAGAATCGAAATGGAAA+TGG | + | chr4.1:8687186-8687205 | MS.gene70242:CDS | 30.0% | |
| CAGAATTGAAGAAAGGGTTT+CGG | + | chr4.1:8687652-8687671 | MS.gene70242:CDS | 35.0% | |
| CATCTCATAGCAACATCTTT+CGG | - | chr4.1:8687573-8687592 | None:intergenic | 35.0% | |
| GAAAGATGTTGCTATGAGAT+GGG | + | chr4.1:8687572-8687591 | MS.gene70242:CDS | 35.0% | |
| GTGAAGAAATCAAAGGAGTT+GGG | + | chr4.1:8687378-8687397 | MS.gene70242:CDS | 35.0% | |
| GTTTCGTTGAAGAATCGAAA+TGG | + | chr4.1:8687180-8687199 | MS.gene70242:CDS | 35.0% | |
| ! | TGAGATTCTGAAGAAACAGA+TGG | + | chr4.1:8687275-8687294 | MS.gene70242:CDS | 35.0% |
| !! | AGAGAAGAAGGTTGATGATT+CGG | + | chr4.1:8687401-8687420 | MS.gene70242:CDS | 35.0% |
| !! | CAGATGAAAATCGATTTGAG+CGG | - | chr4.1:8686955-8686974 | None:intergenic | 35.0% |
| !! | GATAAGAGACTTGTTGAAGA+AGG | + | chr4.1:8687462-8687481 | MS.gene70242:CDS | 35.0% |
| !! | GTGAGAAAGTTGAAAGTGTT+TGG | + | chr4.1:8687502-8687521 | MS.gene70242:CDS | 35.0% |
| AAGCGTGGTGAAGAAATCAA+AGG | + | chr4.1:8687371-8687390 | MS.gene70242:CDS | 40.0% | |
| ACAGATGGTGAAAAATCCAC+CGG | + | chr4.1:8687290-8687309 | MS.gene70242:CDS | 40.0% | |
| CGAAAGATGTTGCTATGAGA+TGG | + | chr4.1:8687571-8687590 | MS.gene70242:CDS | 40.0% | |
| GGTGAAGAAATCAAAGGAGT+TGG | + | chr4.1:8687377-8687396 | MS.gene70242:CDS | 40.0% | |
| TTTCCTGGAATCATCCTCAT+CGG | - | chr4.1:8687088-8687107 | None:intergenic | 40.0% | |
| ! | AAGTGTTTGGAGTTCAAACG+AGG | + | chr4.1:8687515-8687534 | MS.gene70242:CDS | 40.0% |
| ! | TCTGAAGAAGAGAAAAGCGT+TGG | + | chr4.1:8687440-8687459 | MS.gene70242:CDS | 40.0% |
| !! | AAGAGACTTGTTGAAGAAGG+AGG | + | chr4.1:8687465-8687484 | MS.gene70242:CDS | 40.0% |
| !! | CGCTCAAATCGATTTTCATC+TGG | + | chr4.1:8686953-8686972 | MS.gene70242:CDS | 40.0% |
| !! | GATTTCGTTGGTTTCTGGTA+AGG | - | chr4.1:8686862-8686881 | None:intergenic | 40.0% |
| !! | TGAACGATTTCGTTGGTTTC+TGG | - | chr4.1:8686867-8686886 | None:intergenic | 40.0% |
| AAAGGAGTTGGGAGAGAAGA+AGG | + | chr4.1:8687389-8687408 | MS.gene70242:CDS | 45.0% | |
| ACAGCGATGAACGATTTCGT+TGG | - | chr4.1:8686874-8686893 | None:intergenic | 45.0% | |
| AGAAGGAGGAGATTTAGCGA+CGG | + | chr4.1:8687479-8687498 | MS.gene70242:CDS | 45.0% | |
| AGATGGTGAAAAATCCACCG+GGG | + | chr4.1:8687292-8687311 | MS.gene70242:CDS | 45.0% | |
| ATCGGTTGAGGTTTCCTGAT+CGG | - | chr4.1:8687070-8687089 | None:intergenic | 45.0% | |
| CAGATGGTGAAAAATCCACC+GGG | + | chr4.1:8687291-8687310 | MS.gene70242:CDS | 45.0% | |
| CGATTCTTCAACGAAACCAC+CGG | - | chr4.1:8687177-8687196 | None:intergenic | 45.0% | |
| TTCCTGATCGGGGAAATTGA+CGG | - | chr4.1:8687058-8687077 | None:intergenic | 45.0% | |
| TTTGCATTCTCTCTCCTCCT+TGG | + | chr4.1:8686976-8686995 | MS.gene70242:CDS | 45.0% | |
| ! | TCGATTTGAGCGGTTCAGAT+TGG | - | chr4.1:8686945-8686964 | None:intergenic | 45.0% |
| !! | TGGAAACGGTGTTGCATTGT+CGG | + | chr4.1:8687206-8687225 | MS.gene70242:CDS | 45.0% |
| AAAAATCCACCGGGGAAACC+AGG | + | chr4.1:8687300-8687319 | MS.gene70242:CDS | 50.0% | |
| AAAGTTGCTGCTGCTGTTCC+TGG | + | chr4.1:8687597-8687616 | MS.gene70242:CDS | 50.0% | |
| AAGTTGCTGCTGCTGTTCCT+GGG | + | chr4.1:8687598-8687617 | MS.gene70242:CDS | 50.0% | |
| AGATTGGAGCGAAAGGACCA+AGG | - | chr4.1:8686996-8687015 | None:intergenic | 50.0% | |
| ATCATCCGATCTGCGTTGCT+TGG | - | chr4.1:8687130-8687149 | None:intergenic | 50.0% | |
| CAACCGATGAGGATGATTCC+AGG | + | chr4.1:8687082-8687101 | MS.gene70242:CDS | 50.0% | |
| CAGATCCAAGCAACGCAGAT+CGG | + | chr4.1:8687122-8687141 | MS.gene70242:CDS | 50.0% | |
| CCGAAGTTCCTGTATCAGTC+CGG | + | chr4.1:8686811-8686830 | MS.gene70242:CDS | 50.0% | |
| CCGGACTGATACAGGAACTT+CGG | - | chr4.1:8686814-8686833 | None:intergenic | 50.0% | |
| CTGGTAAGGCTGTGATTCAG+TGG | - | chr4.1:8686848-8686867 | None:intergenic | 50.0% | |
| GAAGGAGGAGATTTAGCGAC+GGG | + | chr4.1:8687480-8687499 | MS.gene70242:CDS | 50.0% | |
| GGAAATTGACGGCATGACCA+CGG | - | chr4.1:8687047-8687066 | None:intergenic | 50.0% | |
| GGGTTTCGGACTGCAAAATC+TGG | + | chr4.1:8687666-8687685 | MS.gene70242:CDS | 50.0% | |
| TCAGGAAACCTCAACCGATG+AGG | + | chr4.1:8687071-8687090 | MS.gene70242:CDS | 50.0% | |
| TCGGTTGAGGTTTCCTGATC+GGG | - | chr4.1:8687069-8687088 | None:intergenic | 50.0% | |
| TTCGCTCCAATCTCCATCAC+CGG | + | chr4.1:8687003-8687022 | MS.gene70242:CDS | 50.0% | |
| ! | CAAGCTGCTTTCGATTTCCC+AGG | - | chr4.1:8687618-8687637 | None:intergenic | 50.0% |
| ! | GGAATCATCCTCATCGGTTG+AGG | - | chr4.1:8687082-8687101 | None:intergenic | 50.0% |
| ! | GTGATGGAGATTGGAGCGAA+AGG | - | chr4.1:8687003-8687022 | None:intergenic | 50.0% |
| !! | AAACGGTGTTGCATTGTCGG+CGG | + | chr4.1:8687209-8687228 | MS.gene70242:CDS | 50.0% |
| !!! | GCGCTGCTGAGATTTTTTCC+TGG | - | chr4.1:8687103-8687122 | None:intergenic | 50.0% |
| CGGTTGAGGTTTCCTGATCG+GGG | - | chr4.1:8687068-8687087 | None:intergenic | 55.0% | |
| GGAGAAGGAATGGAACGACG+AGG | + | chr4.1:8687248-8687267 | MS.gene70242:CDS | 55.0% | |
| TGCCGTCAATTTCCCCGATC+AGG | + | chr4.1:8687053-8687072 | MS.gene70242:CDS | 55.0% | |
| TGGAGGAGGAGGAGAAGGAA+TGG | + | chr4.1:8687238-8687257 | MS.gene70242:CDS | 55.0% | |
| TTGGAGCGAAAGGACCAAGG+AGG | - | chr4.1:8686993-8687012 | None:intergenic | 55.0% | |
| AGGCTGTGATTCAGTGGCCG+CGG | - | chr4.1:8686842-8686861 | None:intergenic | 60.0% | |
| ATCCACCGGGGAAACCAGGA+CGG | + | chr4.1:8687304-8687323 | MS.gene70242:CDS | 60.0% | |
| CTCTGTAGTAGCTCCAGCGC+CGG | + | chr4.1:8687155-8687174 | MS.gene70242:CDS | 60.0% | |
| GCGTCACAAGGTGGAAAGCG+TGG | + | chr4.1:8687356-8687375 | MS.gene70242:CDS | 60.0% | |
| GCTCCAATCTCCATCACCGG+CGG | + | chr4.1:8687006-8687025 | MS.gene70242:CDS | 60.0% | |
| TTCAACGAAACCACCGGCGC+TGG | - | chr4.1:8687171-8687190 | None:intergenic | 60.0% | |
| !! | ATTCGGAGGGCGTCACAAGG+TGG | + | chr4.1:8687347-8687366 | MS.gene70242:CDS | 60.0% |
| !! | CGATAGCGGAGGCATTCGGA+GGG | + | chr4.1:8687334-8687353 | MS.gene70242:CDS | 60.0% |
| !! | GAGGCGATAGCGGAGGCATT+CGG | + | chr4.1:8687330-8687349 | MS.gene70242:CDS | 60.0% |
| ACCGGGGAAACCAGGACGGT+GGG | + | chr4.1:8687308-8687327 | MS.gene70242:CDS | 65.0% | |
| AGGACGGTGGGAGGCGATAG+CGG | + | chr4.1:8687320-8687339 | MS.gene70242:CDS | 65.0% | |
| CGGGTGCACCGGACTGATAC+AGG | - | chr4.1:8686822-8686841 | None:intergenic | 65.0% | |
| GGCTGTGATTCAGTGGCCGC+GGG | - | chr4.1:8686841-8686860 | None:intergenic | 65.0% | |
| GTATCAGTCCGGTGCACCCG+CGG | + | chr4.1:8686822-8686841 | MS.gene70242:CDS | 65.0% | |
| TCCCACCGTCCTGGTTTCCC+CGG | - | chr4.1:8687312-8687331 | None:intergenic | 65.0% | |
| TGTTGCATTGTCGGCGGCGG+TGG | + | chr4.1:8687215-8687234 | MS.gene70242:CDS | 65.0% | |
| ! | CGGCGCTGGAGCTACTACAG+AGG | - | chr4.1:8687157-8687176 | None:intergenic | 65.0% |
| ! | TGTAGTAGCTCCAGCGCCGG+TGG | + | chr4.1:8687158-8687177 | MS.gene70242:CDS | 65.0% |
| !! | CGGTGTTGCATTGTCGGCGG+CGG | + | chr4.1:8687212-8687231 | MS.gene70242:CDS | 65.0% |
| !! | GCGATAGCGGAGGCATTCGG+AGG | + | chr4.1:8687333-8687352 | MS.gene70242:CDS | 65.0% |
| !! | GGCATTCGGAGGGCGTCACA+AGG | + | chr4.1:8687344-8687363 | MS.gene70242:CDS | 65.0% |
| !! | GGTGGTGGAGGAGGAGGAGA+AGG | + | chr4.1:8687233-8687252 | MS.gene70242:CDS | 65.0% |
| !! | TCGCCGCCGGTGATGGAGAT+TGG | - | chr4.1:8687012-8687031 | None:intergenic | 65.0% |
| ACCGGCGGCGATTCCCGTGT+CGG | + | chr4.1:8687021-8687040 | MS.gene70242:CDS | 70.0% | |
| ACGGGAATCGCCGCCGGTGA+TGG | - | chr4.1:8687019-8687038 | None:intergenic | 70.0% | |
| CACCGGGGAAACCAGGACGG+TGG | + | chr4.1:8687307-8687326 | MS.gene70242:CDS | 70.0% | |
| CACCGTCCTGGTTTCCCCGG+TGG | - | chr4.1:8687309-8687328 | None:intergenic | 70.0% | |
| CGGCATGACCACGGCCGACA+CGG | - | chr4.1:8687038-8687057 | None:intergenic | 70.0% | |
| GCTATCGCCTCCCACCGTCC+TGG | - | chr4.1:8687321-8687340 | None:intergenic | 70.0% | |
| GGCATGACCACGGCCGACAC+GGG | - | chr4.1:8687037-8687056 | None:intergenic | 70.0% | |
| GGGGAAACCAGGACGGTGGG+AGG | + | chr4.1:8687311-8687330 | MS.gene70242:CDS | 70.0% | |
| TGCATTGTCGGCGGCGGTGG+TGG | + | chr4.1:8687218-8687237 | MS.gene70242:CDS | 70.0% | |
| TTCAGTGGCCGCGGGTGCAC+CGG | - | chr4.1:8686833-8686852 | None:intergenic | 70.0% | |
| ! | ACGGTGGGAGGCGATAGCGG+AGG | + | chr4.1:8687323-8687342 | MS.gene70242:CDS | 70.0% |
| ! | ATTGTCGGCGGCGGTGGTGG+AGG | + | chr4.1:8687221-8687240 | MS.gene70242:CDS | 70.0% |
| GCCGACACGGGAATCGCCGC+CGG | - | chr4.1:8687025-8687044 | None:intergenic | 75.0% | |
| ! | GGCGATTCCCGTGTCGGCCG+TGG | + | chr4.1:8687027-8687046 | MS.gene70242:CDS | 75.0% |
| !!! | GGCGGCGGTGGTGGAGGAGG+AGG | + | chr4.1:8687227-8687246 | MS.gene70242:CDS | 80.0% |
| !!! | GTCGGCGGCGGTGGTGGAGG+AGG | + | chr4.1:8687224-8687243 | MS.gene70242:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 8686784 | 8687701 | 8686784 | ID=MS.gene70242 |
| chr4.1 | mRNA | 8686784 | 8687701 | 8686784 | ID=MS.gene70242.t1;Parent=MS.gene70242 |
| chr4.1 | exon | 8686784 | 8687701 | 8686784 | ID=MS.gene70242.t1.exon1;Parent=MS.gene70242.t1 |
| chr4.1 | CDS | 8686784 | 8687701 | 8686784 | ID=cds.MS.gene70242.t1;Parent=MS.gene70242.t1 |
| Gene Sequence |
| Protein sequence |
