AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70246

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70246.t1 MTR_8g093040 71.429 308 46 6 1 300 1 274 2.56e-135 385
MS.gene70246.t1 MTR_6g045327 53.674 313 117 5 1 303 1 295 6.42e-102 305
MS.gene70246.t1 MTR_4g021760 48.476 328 136 8 1 313 1 310 6.73e-92 276
MS.gene70246.t1 MTR_4g021855 50.996 251 100 5 1 240 1 239 3.49e-74 231
MS.gene70246.t1 MTR_4g021790 44.983 289 127 6 1 278 1 268 1.40e-70 221
MS.gene70246.t1 MTR_4g021845 50.901 222 93 4 1 211 1 217 2.99e-69 215
MS.gene70246.t1 MTR_1g032570 37.467 379 161 9 12 320 9 381 4.86e-68 224
MS.gene70246.t1 MTR_8g105600 37.216 352 163 10 14 324 9 343 5.27e-54 186
MS.gene70246.t1 MTR_2g034960 42.083 240 105 2 13 218 28 267 4.24e-51 178
MS.gene70246.t1 MTR_5g055260 45.494 233 86 7 1 223 1 202 1.33e-49 166
MS.gene70246.t1 MTR_8g079940 38.462 260 121 3 14 237 25 281 5.60e-49 171
MS.gene70246.t1 MTR_4g121020 40.083 242 109 2 13 218 30 271 1.94e-48 172
MS.gene70246.t1 MTR_4g121020 40.083 242 109 2 13 218 30 271 2.04e-48 172
MS.gene70246.t1 MTR_3g086100 37.500 272 130 4 14 247 13 282 6.64e-48 169
MS.gene70246.t1 MTR_1g032570 34.906 318 131 10 73 320 1 312 3.36e-44 159
MS.gene70246.t1 MTR_4g131600 35.968 253 129 2 4 223 10 262 2.19e-42 154
MS.gene70246.t1 MTR_6g016850 47.134 157 70 4 9 153 4 159 1.13e-41 143
MS.gene70246.t1 MTR_4g023980 50.735 136 56 2 61 185 36 171 9.59e-41 140
MS.gene70246.t1 MTR_4g131580 33.840 263 132 3 14 234 17 279 1.94e-40 149
MS.gene70246.t1 MTR_3g102600 36.574 216 113 1 13 228 7 198 5.24e-40 140
MS.gene70246.t1 MTR_4g131570 35.458 251 124 3 14 226 17 267 2.03e-39 146
MS.gene70246.t1 MTR_3g106220 35.081 248 119 3 13 218 7 254 2.67e-38 144
MS.gene70246.t1 MTR_3g102600 37.186 199 101 1 13 211 7 181 3.48e-38 134
MS.gene70246.t1 MTR_1g013170 34.836 244 121 2 13 218 4 247 3.39e-37 139
MS.gene70246.t1 MTR_2g450070 31.559 263 133 3 6 221 10 272 2.32e-36 138
MS.gene70246.t1 MTR_2g450070 31.559 263 133 3 6 221 10 272 2.61e-36 138
MS.gene70246.t1 MTR_7g117705 33.469 245 125 3 13 219 4 248 1.40e-34 131
MS.gene70246.t1 MTR_3g102590 36.139 202 114 3 13 213 7 194 5.95e-33 121
MS.gene70246.t1 MTR_1g013180 32.422 256 135 2 1 218 143 398 6.55e-33 129
MS.gene70246.t1 MTR_3g102590 36.318 201 113 3 13 212 7 193 8.11e-33 122
MS.gene70246.t1 MTR_3g102600 36.416 173 86 1 56 228 1 149 1.41e-32 119
MS.gene70246.t1 MTR_3g086100 35.681 213 97 4 73 247 1 211 1.81e-32 126
MS.gene70246.t1 MTR_3g102600 37.179 156 74 1 56 211 1 132 6.64e-31 114
MS.gene70246.t1 MTR_7g026400 33.500 200 105 3 44 218 17 213 7.80e-31 122
MS.gene70246.t1 MTR_0450s0040 30.364 247 152 6 17 246 7 250 1.94e-29 115
MS.gene70246.t1 MTR_4g121020 39.506 162 61 3 93 218 7 167 6.47e-25 105
MS.gene70246.t1 MTR_8g032710 26.299 308 157 8 18 268 21 315 5.00e-21 93.6
MS.gene70246.t1 MTR_1g067110 31.707 123 79 2 18 136 85 206 3.30e-14 73.9
MS.gene70246.t1 MTR_1g067110 31.707 123 79 2 18 136 85 206 3.49e-14 73.6
MS.gene70246.t1 MTR_4g061360 34.146 123 76 2 18 136 89 210 1.43e-13 72.0
MS.gene70246.t1 MTR_8g024260 31.452 124 82 1 16 136 34 157 1.61e-13 71.6
MS.gene70246.t1 MTR_7g118260 30.000 130 88 1 15 141 11 140 2.49e-13 70.9
MS.gene70246.t1 MTR_3g092780 30.328 122 82 1 18 136 56 177 3.20e-13 70.9
MS.gene70246.t1 MTR_3g092780 30.328 122 82 1 18 136 56 177 3.50e-13 70.5
MS.gene70246.t1 MTR_3g092780 30.328 122 82 1 18 136 56 177 3.70e-13 70.5
MS.gene70246.t1 MTR_3g092780 30.328 122 82 1 18 136 56 177 3.73e-13 70.5
MS.gene70246.t1 MTR_7g118260 30.400 125 84 1 15 136 11 135 3.96e-13 70.5
MS.gene70246.t1 MTR_4g064730 55.172 58 26 0 161 218 130 187 9.89e-13 68.2
MS.gene70246.t1 MTR_5g014040 29.197 137 90 4 5 139 6 137 1.34e-11 65.9
MS.gene70246.t1 MTR_5g041350 48.571 70 34 2 162 230 15 83 1.37e-11 65.1
MS.gene70246.t1 MTR_5g014040 29.197 137 90 4 5 139 6 137 1.37e-11 65.5
MS.gene70246.t1 MTR_7g089010 51.724 58 28 0 161 218 90 147 1.85e-11 64.3
MS.gene70246.t1 MTR_4g098870 51.923 52 25 0 161 212 309 360 8.19e-11 63.2
MS.gene70246.t1 MTR_4g098870 51.923 52 25 0 161 212 329 380 8.65e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70246.t1 AT2G01760 37.548 261 118 2 13 228 6 266 5.65e-50 171
MS.gene70246.t1 AT2G01760 33.910 289 118 3 13 228 6 294 3.11e-44 156
MS.gene70246.t1 AT3G16857 34.831 267 118 2 8 218 27 293 2.88e-42 155
MS.gene70246.t1 AT3G16857 34.831 267 118 2 8 218 27 293 2.99e-42 155
MS.gene70246.t1 AT1G67710 38.095 252 117 5 15 227 8 259 2.61e-41 150
MS.gene70246.t1 AT2G25180 36.508 252 125 4 1 218 1 251 4.04e-40 148
MS.gene70246.t1 AT4G31920 37.860 243 122 5 1 218 1 239 3.40e-38 142
MS.gene70246.t1 AT2G01760 35.323 201 85 2 73 228 1 201 2.02e-32 123
MS.gene70246.t1 AT3G16857 33.632 223 92 2 52 218 1 223 2.73e-32 127
MS.gene70246.t1 AT5G58080 30.962 239 131 3 13 218 13 250 2.27e-30 121
MS.gene70246.t1 AT1G49190 29.688 256 137 5 5 218 21 275 7.98e-29 115
MS.gene70246.t1 AT1G67710 37.113 194 83 5 73 227 1 194 1.40e-27 112
MS.gene70246.t1 AT3G62670 31.381 239 125 6 19 224 42 274 9.27e-27 109
MS.gene70246.t1 AT5G49240 28.125 256 135 3 3 215 27 276 6.33e-26 105
MS.gene70246.t1 AT1G49190 35.878 131 84 0 6 136 22 152 9.08e-21 93.6
MS.gene70246.t1 AT1G67710 35.632 174 73 5 93 227 12 185 8.46e-19 87.0
MS.gene70246.t1 AT5G60100 33.607 122 78 1 18 136 64 185 2.49e-16 80.1
MS.gene70246.t1 AT5G60100 33.607 122 78 1 18 136 64 185 2.63e-16 79.7
MS.gene70246.t1 AT5G60100 33.607 122 78 1 18 136 64 185 2.63e-16 79.7
MS.gene70246.t1 AT5G60100 33.607 122 78 1 18 136 64 185 2.63e-16 79.7
MS.gene70246.t1 AT5G60100 33.607 122 78 1 18 136 64 185 3.06e-16 79.3
MS.gene70246.t1 AT5G60100 33.607 122 78 1 18 136 64 185 3.06e-16 79.3
MS.gene70246.t1 AT5G60100 33.607 122 78 1 18 136 64 185 3.06e-16 79.3
MS.gene70246.t1 AT2G46790 32.520 123 80 1 18 137 37 159 4.31e-15 76.3
MS.gene70246.t1 AT2G46790 32.520 123 80 1 18 137 37 159 5.16e-15 75.9
MS.gene70246.t1 AT5G24470 31.148 122 81 1 18 136 50 171 2.90e-14 73.9
MS.gene70246.t1 AT5G59570 54.237 59 27 0 160 218 139 197 1.61e-13 70.5
MS.gene70246.t1 AT5G59570 54.237 59 27 0 160 218 139 197 1.61e-13 70.5
MS.gene70246.t1 AT3G46640 55.172 58 26 0 161 218 143 200 4.11e-13 69.3
MS.gene70246.t1 AT3G46640 55.172 58 26 0 161 218 143 200 4.11e-13 69.3
MS.gene70246.t1 AT3G46640 55.172 58 26 0 161 218 143 200 4.50e-13 69.3
MS.gene70246.t1 AT5G02810 31.148 122 81 1 18 136 78 199 5.11e-12 67.0
MS.gene70246.t1 AT5G07210 39.423 104 61 2 132 234 199 301 5.32e-12 67.0
MS.gene70246.t1 AT5G07210 39.423 104 61 2 132 234 191 293 5.84e-12 67.0
MS.gene70246.t1 AT5G44190 53.704 54 25 0 159 212 144 197 7.38e-12 66.2
MS.gene70246.t1 AT5G44190 53.704 54 25 0 159 212 144 197 7.76e-12 65.9
MS.gene70246.t1 AT2G40970 50.000 58 29 0 161 218 104 161 8.09e-12 64.7
MS.gene70246.t1 AT5G05090 51.724 58 28 0 161 218 80 137 9.46e-12 64.7
MS.gene70246.t1 AT5G61380 29.508 122 83 1 18 136 19 140 1.31e-11 65.9
MS.gene70246.t1 AT3G10760 51.724 58 28 0 161 218 104 161 1.34e-11 65.1
MS.gene70246.t1 AT3G04030 52.727 55 25 1 162 215 45 99 7.65e-11 63.2
MS.gene70246.t1 AT3G04030 52.727 55 25 1 162 215 45 99 8.15e-11 63.2

Find 55 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATTTGATTCTCGATTAA+AGG 0.164354 4.1:-8717887 None:intergenic
GGAATATGGTATATTCAATT+AGG 0.202842 4.1:+8718690 MS.gene70246:CDS
AATTGCATCGACAATTTCTA+AGG 0.211162 4.1:+8718038 MS.gene70246:CDS
TGTTTCCATCAAAAGTTTAA+AGG 0.235719 4.1:-8717570 None:intergenic
CAAACGGGGCTTGCGAATAT+TGG 0.275266 4.1:+8717858 MS.gene70246:CDS
TCCAGTTACAACATGTTCTA+AGG 0.282036 4.1:+8717538 MS.gene70246:intron
ATCGCTTTATGAATTGCTTT+TGG 0.284723 4.1:-8718202 None:intergenic
TAAAGAATAGAAAGTCAAAA+AGG 0.285756 4.1:+8718407 MS.gene70246:CDS
ATTCTTTAGATGTGTCTCTT+TGG 0.286927 4.1:-8718392 None:intergenic
ACATTTCCACAACAGCATTA+AGG 0.328612 4.1:-8717367 None:intergenic
AGAAATTGTCGATGCAATTC+AGG 0.341097 4.1:-8718034 None:intergenic
GCACAACCTCCATCGGAATA+TGG 0.347834 4.1:+8718676 MS.gene70246:CDS
CTCTTAAATCCTCTGGGAAT+TGG 0.352622 4.1:-8717316 None:intergenic
GCAAGTTGCTAGCCATTTGC+AGG 0.355161 4.1:+8718249 MS.gene70246:CDS
CTAAGGGTTGTGAATGAACT+TGG 0.358456 4.1:+8718055 MS.gene70246:CDS
CATAAAGCGATGAATGTTCC+TGG 0.373937 4.1:+8718214 MS.gene70246:CDS
ATATACGATTCTTCTTCGTT+AGG 0.374538 4.1:-8718003 None:intergenic
TATACGATTCTTCTTCGTTA+GGG 0.386785 4.1:-8718002 None:intergenic
GAATATGGTATATTCAATTA+GGG 0.387647 4.1:+8718691 MS.gene70246:CDS
GAACTCAATTGTGTTTCGTT+AGG 0.423423 4.1:-8718466 None:intergenic
ACAAGAACTCTTAAATCCTC+TGG 0.429240 4.1:-8717323 None:intergenic
AACAAACCTTGATAATTGCT+TGG 0.435234 4.1:-8717395 None:intergenic
AGAGTTGTCGTTGCATTGTA+TGG 0.450449 4.1:-8718539 None:intergenic
TGACAGGAATATTGATTTGT+TGG 0.454324 4.1:-8717670 None:intergenic
TAAATCCTCTGGGAATTGGC+TGG 0.455635 4.1:-8717312 None:intergenic
TGATGAAAGCTGTTGCAAAC+GGG 0.461960 4.1:+8717843 MS.gene70246:CDS
ATAAACATAATCAAAGCAAA+AGG 0.469172 4.1:+8717951 MS.gene70246:CDS
TCTATTCCAAGCAATTATCA+AGG 0.472629 4.1:+8717389 MS.gene70246:CDS
AAATCATATGAATCCATGTC+TGG 0.476246 4.1:-8717632 None:intergenic
TAAACATAATCAAAGCAAAA+GGG 0.478480 4.1:+8717952 MS.gene70246:CDS
GTGATGAAAGCTGTTGCAAA+CGG 0.482441 4.1:+8717842 MS.gene70246:CDS
TATATATTCTTACTGATGAC+AGG 0.490720 4.1:-8717686 None:intergenic
GACAGGAATATTGATTTGTT+GGG 0.492437 4.1:-8717669 None:intergenic
CGAAGAAGAATCGTATATCA+TGG 0.494656 4.1:+8718008 MS.gene70246:CDS
TGATTTGTTGGGTAACATGT+CGG 0.535639 4.1:-8717658 None:intergenic
ATAGTGATGATGAATCATCT+TGG 0.538208 4.1:-8718648 None:intergenic
AGAGGATTTAAGAGTTCTTG+TGG 0.539349 4.1:+8717325 MS.gene70246:CDS
CAAGAACTCTTAAATCCTCT+GGG 0.542866 4.1:-8717322 None:intergenic
CATCTTGGATCATGTAGGAC+TGG 0.543187 4.1:-8718633 None:intergenic
TGAAGCTCAAATGCCAGACA+TGG 0.549847 4.1:+8717619 MS.gene70246:CDS
TGTGCAGTGATGTGTGATGA+TGG 0.552839 4.1:+8717806 MS.gene70246:intron
AAATCCTCTGGGAATTGGCT+GGG 0.555538 4.1:-8717311 None:intergenic
TGATGTCCTTAATGCTGTTG+TGG 0.557832 4.1:+8717361 MS.gene70246:CDS
ATACGAAGCACAACCTCCAT+CGG 0.580105 4.1:+8718669 MS.gene70246:CDS
ATACGATTCTTCTTCGTTAG+GGG 0.588904 4.1:-8718001 None:intergenic
AATATACCATATTCCGATGG+AGG 0.592529 4.1:-8718682 None:intergenic
ATTGCATCGACAATTTCTAA+GGG 0.597352 4.1:+8718039 MS.gene70246:CDS
AGAATCAAATCAAGAACATG+TGG 0.615053 4.1:+8717897 MS.gene70246:CDS
GATGAAAGCTGTTGCAAACG+GGG 0.621578 4.1:+8717844 MS.gene70246:CDS
AAACATAATCAAAGCAAAAG+GGG 0.630491 4.1:+8717953 MS.gene70246:CDS
TGAATCATCTTGGATCATGT+AGG 0.631847 4.1:-8718638 None:intergenic
TTGAATATACCATATTCCGA+TGG 0.640230 4.1:-8718685 None:intergenic
AACAAAGGGCTGTGTTGATG+TGG 0.643059 4.1:+8717589 MS.gene70246:CDS
ACATGTGGCAGTGTGTTGCA+AGG 0.672995 4.1:+8717912 MS.gene70246:CDS
ACTTCCCAGCCAATTCCCAG+AGG 0.715638 4.1:+8717307 MS.gene70246:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAGAGAAAATAAAAATTAT+TGG - chr4.1:8718103-8718122 None:intergenic 15.0%
!! AAAGAATAGAAAGTCAAAAA+GGG + chr4.1:8718408-8718427 MS.gene70246:CDS 20.0%
!! ATAAACATAATCAAAGCAAA+AGG + chr4.1:8717951-8717970 MS.gene70246:CDS 20.0%
!! TAAACATAATCAAAGCAAAA+GGG + chr4.1:8717952-8717971 MS.gene70246:CDS 20.0%
!! TAAAGAATAGAAAGTCAAAA+AGG + chr4.1:8718407-8718426 MS.gene70246:CDS 20.0%
!!! TGTTTTTTGTATTAATGTAG+TGG + chr4.1:8718274-8718293 MS.gene70246:intron 20.0%
! AAACATAATCAAAGCAAAAG+GGG + chr4.1:8717953-8717972 MS.gene70246:CDS 25.0%
! AAGAATAGAAAGTCAAAAAG+GGG + chr4.1:8718409-8718428 MS.gene70246:CDS 25.0%
! GAAAAAGAATCTTACTATCA+AGG - chr4.1:8718081-8718100 None:intergenic 25.0%
! TATATATTCTTACTGATGAC+AGG - chr4.1:8717689-8717708 None:intergenic 25.0%
! TGTTTCCATCAAAAGTTTAA+AGG - chr4.1:8717573-8717592 None:intergenic 25.0%
!! AAACTTTTGATGGAAACAAA+GGG + chr4.1:8717575-8717594 MS.gene70246:CDS 25.0%
!! CTGAGTTCATTAAATTTTCT+GGG - chr4.1:8718519-8718538 None:intergenic 25.0%
!! TAAACTTTTGATGGAAACAA+AGG + chr4.1:8717574-8717593 MS.gene70246:CDS 25.0%
!! TTGATTTGATTCTCGATTAA+AGG - chr4.1:8717890-8717909 None:intergenic 25.0%
!! TTTTGCCTTTAAACTTTTGA+TGG + chr4.1:8717565-8717584 MS.gene70246:CDS 25.0%
AAATCATATGAATCCATGTC+TGG - chr4.1:8717635-8717654 None:intergenic 30.0%
ACAAAAAACAAACCTGCAAA+TGG - chr4.1:8718264-8718283 None:intergenic 30.0%
AGAATAGAAAGTCAAAAAGG+GGG + chr4.1:8718410-8718429 MS.gene70246:CDS 30.0%
AGAATCAAATCAAGAACATG+TGG + chr4.1:8717897-8717916 MS.gene70246:CDS 30.0%
ATATACGATTCTTCTTCGTT+AGG - chr4.1:8718006-8718025 None:intergenic 30.0%
ATTCTTTAGATGTGTCTCTT+TGG - chr4.1:8718395-8718414 None:intergenic 30.0%
CAAAAGTTCAAGAATTTCAC+AGG - chr4.1:8717474-8717493 None:intergenic 30.0%
TATACGATTCTTCTTCGTTA+GGG - chr4.1:8718005-8718024 None:intergenic 30.0%
TCTATTCCAAGCAATTATCA+AGG + chr4.1:8717389-8717408 MS.gene70246:CDS 30.0%
TTGAATATACCATATTCCGA+TGG - chr4.1:8718688-8718707 None:intergenic 30.0%
! AACAAACCTTGATAATTGCT+TGG - chr4.1:8717398-8717417 None:intergenic 30.0%
! AATTGCATCGACAATTTCTA+AGG + chr4.1:8718038-8718057 MS.gene70246:CDS 30.0%
! ATAGTGATGATGAATCATCT+TGG - chr4.1:8718651-8718670 None:intergenic 30.0%
! ATCGCTTTATGAATTGCTTT+TGG - chr4.1:8718205-8718224 None:intergenic 30.0%
! ATTGCATCGACAATTTCTAA+GGG + chr4.1:8718039-8718058 MS.gene70246:CDS 30.0%
! CTGTGAAATTCTTGAACTTT+TGG + chr4.1:8717472-8717491 MS.gene70246:intron 30.0%
! GCTGAGTTCATTAAATTTTC+TGG - chr4.1:8718520-8718539 None:intergenic 30.0%
!! GACAGGAATATTGATTTGTT+GGG - chr4.1:8717672-8717691 None:intergenic 30.0%
!! TGACAGGAATATTGATTTGT+TGG - chr4.1:8717673-8717692 None:intergenic 30.0%
AATATACCATATTCCGATGG+AGG - chr4.1:8718685-8718704 None:intergenic 35.0%
ACAAGAACTCTTAAATCCTC+TGG - chr4.1:8717326-8717345 None:intergenic 35.0%
ACATTTCCACAACAGCATTA+AGG - chr4.1:8717370-8717389 None:intergenic 35.0%
AGAAATTGTCGATGCAATTC+AGG - chr4.1:8718037-8718056 None:intergenic 35.0%
AGAGGATTTAAGAGTTCTTG+TGG + chr4.1:8717325-8717344 MS.gene70246:CDS 35.0%
ATACGATTCTTCTTCGTTAG+GGG - chr4.1:8718004-8718023 None:intergenic 35.0%
CAAGAACTCTTAAATCCTCT+GGG - chr4.1:8717325-8717344 None:intergenic 35.0%
CGAAGAAGAATCGTATATCA+TGG + chr4.1:8718008-8718027 MS.gene70246:CDS 35.0%
GAACTCAATTGTGTTTCGTT+AGG - chr4.1:8718469-8718488 None:intergenic 35.0%
GGAGAGACAAAAATTTACAC+AGG - chr4.1:8718162-8718181 None:intergenic 35.0%
TAGAACATGTTGTAACTGGA+AGG - chr4.1:8717538-8717557 None:intergenic 35.0%
TCCAGTTACAACATGTTCTA+AGG + chr4.1:8717538-8717557 MS.gene70246:intron 35.0%
TGAATCATCTTGGATCATGT+AGG - chr4.1:8718641-8718660 None:intergenic 35.0%
! GCTTTGCCTCTGAAAAATAA+GGG - chr4.1:8718183-8718202 None:intergenic 35.0%
!! TGATTTGTTGGGTAACATGT+CGG - chr4.1:8717661-8717680 None:intergenic 35.0%
AGAGTTGTCGTTGCATTGTA+TGG - chr4.1:8718542-8718561 None:intergenic 40.0%
ATAGAAAGTCAAAAAGGGGG+CGG + chr4.1:8718413-8718432 MS.gene70246:CDS 40.0%
CATAAAGCGATGAATGTTCC+TGG + chr4.1:8718214-8718233 MS.gene70246:CDS 40.0%
CTAAGGGTTGTGAATGAACT+TGG + chr4.1:8718055-8718074 MS.gene70246:CDS 40.0%
GCCTTAGAACATGTTGTAAC+TGG - chr4.1:8717542-8717561 None:intergenic 40.0%
GTGATGAAAGCTGTTGCAAA+CGG + chr4.1:8717842-8717861 MS.gene70246:CDS 40.0%
TGATGAAAGCTGTTGCAAAC+GGG + chr4.1:8717843-8717862 MS.gene70246:CDS 40.0%
TGATGTCCTTAATGCTGTTG+TGG + chr4.1:8717361-8717380 MS.gene70246:CDS 40.0%
! ACTTGCTCTTTTGTCAAACC+AGG - chr4.1:8718235-8718254 None:intergenic 40.0%
! CTCTTAAATCCTCTGGGAAT+TGG - chr4.1:8717319-8717338 None:intergenic 40.0%
! GGCTTTGCCTCTGAAAAATA+AGG - chr4.1:8718184-8718203 None:intergenic 40.0%
!! GGACTGGTCAGTAAAAATGT+TGG - chr4.1:8718620-8718639 None:intergenic 40.0%
!!! GTCTCTCCCTTATTTTTCAG+AGG + chr4.1:8718174-8718193 MS.gene70246:intron 40.0%
ATACGAAGCACAACCTCCAT+CGG + chr4.1:8718669-8718688 MS.gene70246:CDS 45.0%
CATCTTGGATCATGTAGGAC+TGG - chr4.1:8718636-8718655 None:intergenic 45.0%
GATGAAAGCTGTTGCAAACG+GGG + chr4.1:8717844-8717863 MS.gene70246:CDS 45.0%
TGAAGCTCAAATGCCAGACA+TGG + chr4.1:8717619-8717638 MS.gene70246:CDS 45.0%
TGTGCAGTGATGTGTGATGA+TGG + chr4.1:8717806-8717825 MS.gene70246:intron 45.0%
! AAATCCTCTGGGAATTGGCT+GGG - chr4.1:8717314-8717333 None:intergenic 45.0%
! AACAAAGGGCTGTGTTGATG+TGG + chr4.1:8717589-8717608 MS.gene70246:CDS 45.0%
! TAAATCCTCTGGGAATTGGC+TGG - chr4.1:8717315-8717334 None:intergenic 45.0%
ACATGTGGCAGTGTGTTGCA+AGG + chr4.1:8717912-8717931 MS.gene70246:CDS 50.0%
CAAACGGGGCTTGCGAATAT+TGG + chr4.1:8717858-8717877 MS.gene70246:CDS 50.0%
GCAAGTTGCTAGCCATTTGC+AGG + chr4.1:8718249-8718268 MS.gene70246:CDS 50.0%
GCACAACCTCCATCGGAATA+TGG + chr4.1:8718676-8718695 MS.gene70246:CDS 50.0%
ACTTCCCAGCCAATTCCCAG+AGG + chr4.1:8717307-8717326 MS.gene70246:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 8717281 8718711 8717281 ID=MS.gene70246
chr4.1 mRNA 8717281 8718711 8717281 ID=MS.gene70246.t1;Parent=MS.gene70246
chr4.1 exon 8717281 8717410 8717281 ID=MS.gene70246.t1.exon1;Parent=MS.gene70246.t1
chr4.1 CDS 8717281 8717410 8717281 ID=cds.MS.gene70246.t1;Parent=MS.gene70246.t1
chr4.1 exon 8717543 8717695 8717543 ID=MS.gene70246.t1.exon2;Parent=MS.gene70246.t1
chr4.1 CDS 8717543 8717695 8717543 ID=cds.MS.gene70246.t1;Parent=MS.gene70246.t1
chr4.1 exon 8717813 8718085 8717813 ID=MS.gene70246.t1.exon3;Parent=MS.gene70246.t1
chr4.1 CDS 8717813 8718085 8717813 ID=cds.MS.gene70246.t1;Parent=MS.gene70246.t1
chr4.1 exon 8718194 8718270 8718194 ID=MS.gene70246.t1.exon4;Parent=MS.gene70246.t1
chr4.1 CDS 8718194 8718270 8718194 ID=cds.MS.gene70246.t1;Parent=MS.gene70246.t1
chr4.1 exon 8718364 8718711 8718364 ID=MS.gene70246.t1.exon5;Parent=MS.gene70246.t1
chr4.1 CDS 8718364 8718711 8718364 ID=cds.MS.gene70246.t1;Parent=MS.gene70246.t1
Gene Sequence

>MS.gene70246

ATGGCTCTTTTTAACGATATAGAGTCACTTCCCAGCCAATTCCCAGAGGATTTAAGAGTTCTTGTGGTTGATCATGACACTGATGTCCTTAATGCTGTTGTGGAAATGTCTATTCCAAGCAATTATCAAGGTTTGTTAATTAATTTATCATATATACTTTGTTCAATTGCAGATTAAATTATGTTATTAACCTGTGAAATTCTTGAACTTTTGGCATAATTTCTTACTTGTGTATTTTTATGTATTCTTTTTTTCCTTCCAGTTACAACATGTTCTAAGGCTTCTTTTGCCTTTAAACTTTTGATGGAAACAAAGGGCTGTGTTGATGTGGTACTAATTGAAGCTCAAATGCCAGACATGGATTCATATGATTTTGTCCGACATGTTACCCAACAAATCAATATTCCTGTCATCAGTAAGAATATATATAATTAACTATATTACAAAATTATATCACATAATTAATTTATTCATATACTTATGTATGACATTGTTATTTATTATTTAATTATAATGTTAATTACATGTGCAGTGATGTGTGATGATGGATCAACAAGTGCAGTGATGAAAGCTGTTGCAAACGGGGCTTGCGAATATTGGATTAAGCCTTTAATCGAGAATCAAATCAAGAACATGTGGCAGTGTGTTGCAAGGAAATTTTTCAATGAAAATAAACATAATCAAAGCAAAAGGGGAAGAGATGATAATGCTAATTATCAACCCCTAACGAAGAAGAATCGTATATCATGGACACCTGAATTGCATCGACAATTTCTAAGGGTTGTGAATGAACTTGGCCTTGATAGTAAGATTCTTTTTCCAATAATTTTTATTTTCTCTCTCTTATTTTCTTTGTTTGTATACTTCAAGAAACTAAACCTGTGTAAATTTTTGTCTCTCCCTTATTTTTCAGAGGCAAAGCCAAAAGCAATTCATAAAGCGATGAATGTTCCTGGTTTGACAAAAGAGCAAGTTGCTAGCCATTTGCAGGTTTGTTTTTTGTATTAATGTAGTGGTAGTGATTTTGTTTTGTGTGATTTTAAATTATAATATATATTAACATTAAGATTTGAATATTGACAGAGAGTGATACTTGATTTGAAGAGTTCAACCAAAGAGACACATCTAAAGAATAGAAAGTCAAAAAGGGGGCGGAAAAAATCAAAGTTTGATCAATATGATGTTCCTAACGAAACACAATTGAGTTCTGAAGCTGTTCACTCAATACAACAAGACCCAGAAAATTTAATGAACTCAGCCATACAATGCAACGACAACTCTCATGCACAACAAGATCTGATGACATTCGACGATTATGAAGATTTTGACATTATTGCCAACATTTTTACTGACCAGTCCTACATGATCCAAGATGATTCATCATCACTATACGAAGCACAACCTCCATCGGAATATGGTATATTCAATTAG
Protein sequence

>MS.gene70246.t1

MALFNDIESLPSQFPEDLRVLVVDHDTDVLNAVVEMSIPSNYQVTTCSKASFAFKLLMETKGCVDVVLIEAQMPDMDSYDFVRHVTQQINIPVIMMCDDGSTSAVMKAVANGACEYWIKPLIENQIKNMWQCVARKFFNENKHNQSKRGRDDNANYQPLTKKNRISWTPELHRQFLRVVNELGLDKAKPKAIHKAMNVPGLTKEQVASHLQRVILDLKSSTKETHLKNRKSKRGRKKSKFDQYDVPNETQLSSEAVHSIQQDPENLMNSAIQCNDNSHAQQDLMTFDDYEDFDIIANIFTDQSYMIQDDSSSLYEAQPPSEYGIFN