AlfalfaGEDB | MS.gene70262

M. sativa cultivar XinJiangDaYe / MS.gene70262

KEGG: K09422
GO: GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005634 GO:0006325 GO:0006334 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044815 GO:0065003 GO:0065004 GO:0071824 GO:0071840 GO:0097159 GO:0110165 GO:1901363
PFAM: PF00249.34 PF00538.22

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70262.t1	AET04670.2	91.8	256	21	0	1	256	1	256	1.10E-123	453

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70262.t1	Q8VWK4	46.9	262	119	8	1	257	1	247	1.4e-50	201.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70262.t1	G7LCB1	91.8	256	21	0	1	256	1	256	7.9e-124	453.0

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene70262.t1	TF	MYB-related

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70262.t1	MTR_8g092810	94.862	253	13	0	1	253	1	253	5.00e-176	494
MS.gene70262.t1	MTR_2g031870	64.919	248	78	1	1	248	1	239	4.01e-109	319
MS.gene70262.t1	MTR_8g494240	64.400	250	74	4	1	248	1	237	1.66e-105	310
MS.gene70262.t1	MTR_8g494240	64.400	250	74	4	1	248	1	237	3.85e-105	309
MS.gene70262.t1	MTR_8g494240	64.400	250	74	4	1	248	1	237	6.01e-104	309
MS.gene70262.t1	MTR_8g494240	42.857	112	34	3	3	114	304	385	2.16e-15	76.3
MS.gene70262.t1	MTR_2g031870	56.048	248	74	2	1	248	1	213	6.15e-84	254
MS.gene70262.t1	MTR_0095s0040	66.883	154	49	1	1	152	1	154	6.52e-68	212
MS.gene70262.t1	MTR_4g097130	39.015	264	132	5	1	248	1	251	1.24e-53	177
MS.gene70262.t1	MTR_4g097130	39.015	264	132	5	1	248	1	251	1.48e-53	177

Showing 1 to 10 of 19 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70262.t1	AT1G49950	46.512	258	112	9	1	250	1	240	1.18e-65	208
MS.gene70262.t1	AT1G49950	46.512	258	112	9	1	250	1	240	1.18e-65	208
MS.gene70262.t1	AT1G49950	46.512	258	112	9	1	250	1	240	1.18e-65	208
MS.gene70262.t1	AT5G67580	42.384	302	160	5	1	299	1	291	1.16e-44	154
MS.gene70262.t1	AT5G67580	42.384	302	160	5	1	299	1	291	1.16e-44	154
MS.gene70262.t1	AT3G49850	36.530	219	137	2	1	219	1	217	1.44e-39	140
MS.gene70262.t1	AT3G49850	36.530	219	137	2	1	219	1	217	1.44e-39	140
MS.gene70262.t1	AT1G72740	36.316	190	113	3	1	187	1	185	9.16e-29	112
MS.gene70262.t1	AT1G72740	36.957	184	108	3	1	181	1	179	2.23e-27	108
MS.gene70262.t1	AT1G17520	35.638	188	116	1	1	183	1	188	1.01e-24	101

Showing 1 to 10 of 13 entries

Previous1 2Next

Find 73 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCGACCCATGTTATTAT+TGG	0.212298	4.1:+8869995	MS.gene70262:CDS
AAAGCTGGAGTTGTGAAGCA+TGG	0.620365	4.1:+8866193	MS.gene70262:CDS
AAAGTCCATGTCTTTACAAG+AGG	0.539777	4.1:+8870133	MS.gene70262:CDS
AAATAAGCTGTCAGCAAAAC+TGG	0.353881	4.1:+8868980	MS.gene70262:CDS
AACAGATATGCTGGAAATTA+AGG	0.140872	4.1:+8866596	MS.gene70262:CDS
AACTATTGCTTCTTTCATTA+AGG	0.194532	4.1:+8867548	MS.gene70262:CDS
AAGAAAGGCTGAGATAGACT+TGG	0.566957	4.1:+8870097	MS.gene70262:CDS
AAGCCTCTATTAAATCTGAC+AGG	0.463302	4.1:+8870030	MS.gene70262:CDS
AAGGCAAATGGATCATCCTC+CGG	0.503120	4.1:+8866444	MS.gene70262:CDS
AATATGAGTCTGAAGGCAAA+TGG	0.474909	4.1:+8866432	MS.gene70262:CDS

Showing 1 to 10 of 73 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTATCTTCCACTTCCA+AGG	-	chr4.1:8867010-8867029	None:intergenic	30.0%
AACAGATATGCTGGAAATTA+AGG	+	chr4.1:8866596-8866615	MS.gene70262:CDS	30.0%
AAGTTCTATAGCATTCCATT+TGG	+	chr4.1:8868842-8868861	MS.gene70262:intron	30.0%
ACAGATATGCTGGAAATTAA+GGG	+	chr4.1:8866597-8866616	MS.gene70262:CDS	30.0%
AGTAACAAAATTTACAGCCA+CGG	-	chr4.1:8866532-8866551	None:intergenic	30.0%
ATATACTAAGCTTCCATTCA+TGG	-	chr4.1:8868696-8868715	None:intergenic	30.0%
ATCAAAGCAATTATGGTGTA+CGG	-	chr4.1:8868505-8868524	None:intergenic	30.0%
ATCTCAATGTTTGGTTATGT+GGG	+	chr4.1:8866389-8866408	MS.gene70262:intron	30.0%
ATTGCTTACACATGAATAGA+AGG	+	chr4.1:8868142-8868161	MS.gene70262:intron	30.0%
CATTTATTGTGAGCGATATT+TGG	+	chr4.1:8869853-8869872	MS.gene70262:intron	30.0%

Showing 1 to 10 of 295 entries

Previous1 2 3 4 5…30Next

Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	8866145	8870310	8866145	ID=MS.gene70262
chr4.1	mRNA	8866145	8870310	8866145	ID=MS.gene70262.t1;Parent=MS.gene70262
chr4.1	exon	8866145	8866294	8866145	ID=MS.gene70262.t1.exon1;Parent=MS.gene70262.t1
chr4.1	CDS	8866145	8866294	8866145	ID=cds.MS.gene70262.t1;Parent=MS.gene70262.t1
chr4.1	exon	8866420	8866640	8866420	ID=MS.gene70262.t1.exon2;Parent=MS.gene70262.t1
chr4.1	CDS	8866420	8866640	8866420	ID=cds.MS.gene70262.t1;Parent=MS.gene70262.t1
chr4.1	exon	8867485	8867569	8867485	ID=MS.gene70262.t1.exon3;Parent=MS.gene70262.t1
chr4.1	CDS	8867485	8867569	8867485	ID=cds.MS.gene70262.t1;Parent=MS.gene70262.t1
chr4.1	exon	8868951	8869034	8868951	ID=MS.gene70262.t1.exon4;Parent=MS.gene70262.t1
chr4.1	CDS	8868951	8869034	8868951	ID=cds.MS.gene70262.t1;Parent=MS.gene70262.t1
chr4.1	exon	8869942	8870310	8869942	ID=MS.gene70262.t1.exon5;Parent=MS.gene70262.t1
chr4.1	CDS	8869942	8870310	8869942	ID=cds.MS.gene70262.t1;Parent=MS.gene70262.t1

Gene Sequence

>MS.gene70262

ATGGGTGCTACTAGACAGAAATGGTCATCAGAAGAGGAAGCGGCTCTCAAAGCTGGAGTTGTGAAGCATGGCGTAGGTAAATGGAGTAAGATACTCAAGGATCCTGAGTTTAACCATGTGTTGTATATCCGCTCAAATATCGATCTCAAGGTTTGCTTATGATGTTGGTTGTTATGCTTATTTGTTTATTTATTCCCTTTACATATAATAATGTATTGAATAAATGTTGGACCGTCAAATGTGGATCTCAATGTTTGGTTATGTGGGTTGCATAGGATAAATGGAGAAATATGAGTCTGAAGGCAAATGGATCATCCTCCGGGGACAACTCTCAGCTAGCAATAAAAAGGGTGCGTCATCAGGCACCAGAACAGCGTGACGACTCCGTGGCTGTAAATTTTGTTACTACTATTGATGATAAAATTCTTGATGTTCAGCCTCTTCAAGTTAAAACAGATATGCTGGAAATTAAGGGTCCGGAAAGGTCTATCAAAAGGTTGGCCCCATATTTTTTGTTTTGTTTAGTATGGTAATTTATTTAATGGAAAATGCTAACAAGTTCCCAAAGACATTTGTTAAAAAGTTCAAAATGAAAAATTTATCTTGGAAATTATGTATTCAACACATTGAAACATTAAAAAGAAATTTTTTCTACATAAACTTATCAACTGTTTCCTTTTTTGAATCCTTAACTTAGCATGACCCTTATTTAATTGCATCTTATAGAGATTGAATTTTAACAAACTGCTATTGTTCTGCGATGCACAATTTAATACAAAATATCGACCGTAATATCCCTATTGGTTTATTTGGTCGAAATGCGGGAAAGCTCCGTTTGGTGGAATCGAGTTTTGTGAATTATCCTTGGAAGTGGAAGATAATTTTGAGATCTTCAAAAGATATCCGGGGGTTCATTGTGACTAGTGTCACTTCAGCCAATACACAAGACGAGACTTTACCACAGTGGAGTGGCTTTTTGCAAAAAGATGACGGAGAAACTCAGCAATAGACTATAGCAGCACTTTATCACTGTAGTGTAGCAGAACATGAACAAACTAATATTTTCCGTGATCTGTGATTGGCAACACTCGCATCTATGAACCTTGTTTGCAGAATAGGACATATATAATTTAATTGTGCTACCGGCGATTGTCTTTCAATTAGGGATTCTTGTTAATTACCAAGCGTGTTAAGATCATCCAGCTTCCTTGCTAGTATGCTTGCCTAATTTCATTCTCTTGTTTTGCTAGCATCGTGTAGAGTATTCTTTTATTTGAAATTTTGTTTATATGCATTCCTCATTTTGACAGTGTATGCTTAACCATGTTTACATTATACAGATTGGACAACCTTATAGTGGAAGCAATATCTAGCTTGAATGAGGTCGATGGTTCTAATAAAACAACTATTGCTTCTTTCATTAAGGTATAATTATGATTTCTAGGCCCAACTTTTATTTGTTCTGCTTTTAAATTATTAAATTTGGTGTCATGCTATTATTTTAACTTCATGATTGAAGATGTTGAACTACGTAAATATCACATAAAATCATTGTTCTATCTGAACAGTATTTTAGAATATCTTAGAAAATCTCTCGTCTATATTCCATGATGTTATTTGTTTAATTTTGATTAGTACAAAAATTGGTTAGTACTTCATCTGCAAGCGAACCTTGGCACATTGGTAAGGTGACTACCTTGTAATATGGAGGTCATAGGTTGAACTCCTTGCAACAGCCTCTTCGCTTGCGGGTGTAAGGCTGCTTACATCTATACTCACCTAGTGGGAGCCTGTGCACTGGAGTAATAAATGAAAATCACTTTTGCGTGAATAAATTACAAGAAACTATCCTTGTTTGCAGTCGTAGAATTGTATAGAAGAAAATGTAAGAAGTAGGGAAAGAAGATATACAAATGTTTAATCAACTACATATAATAACACTTATTACGCAAATATTTAATTGCTTCAAATTTCTTCTTCATTTATATATATCAAGGATTGCTTACACATGAATAGAAGGCAAGCGGGCAACAAGCTGCGCTGCTAAGCCTTTTTGGATGGAAAAACCAATCCTCGGAAACACAACATTCATGGACCTAGGAGACATGACATTGCTATGCATGACCCTTTGAACTCTATGTAGAAGGTTAACACCCTCTGGTGCTAGGAAGCGGAAAGTGTCAAAAGCAAATGGTATAAAAGCGTGTTGATTGTCAGAACACGCTTTCTCATGTTTGGCCACTTTGTTTGGCGCGGCTTTTAGGGCTGTCTGTCCTACCATAAAAGCCCCGACCCCTAATCCCACAAGTGGTGATACCCCAGTCAAGTCCACACATGCATGTTTTCCTCCTACCCATCCGTACACCATAATTGCTTTGATTTTGCTAAGACGATGCCATCATGAAGCAGAGCTAGTTTAGAAGAAGAAGGTTAAAATTAAGCCATGTGCTGAAAGACAAGTGAACCTATTTGCACAAAGAAGCTTGAGTGGTGTGAGTGTCGTGCAACTCGAAGCCTTTTGAAACCTGGTTACTGTGACTTGTGATTTCCATGAATGGAAGCTTAGTATATCTTGACCCTTTGGTGCTTCAAATGCCCCTTGTGGTAGAATGCGATCTATGATGCTATTTCAACTTTCAATTGGCTAAATCTTATGTGGTTAAGAAATGATTATATTGATTATTGCAATACTAACTAAAGTTCTATAGCATTCCATTTGGTTGGATACTTTTCTATTTTATTTTTTCTTATGCACTATTGTTTTTGTGTTAAACATAAGTTGAATTCATTACTCTGTATTCTGTAGAACCAATACTGCGCACCGGCAGATTTCAAAAATAAGCTGTCAGCAAAACTGGTGGATCTTGTATCTAGTGGAAAACTGATCAAGGTATATTACAACATGTTTCATTATGTCATAACTATTCCATCTCATGCAAACATACAATAAAAATTGTCATAAATGCATTTGTTTTCACAACGTATTTTTTTGTGGTTTTATCCAATCACCAGTATCGGTGCACTTTACAACCCTATCCTATGGGTTAATGTAGGAACATGAGCATCAAATGATATTGAAACATGGATATCCCCATTTGTAGCAGAGGTTGGCCTGTCTTTACATCCCCTATCTTTTGAGAGTGGGTTCTTCTCTGCAATACTGTTTTATATTTAGCGCTTCATGGACAAATACTAAGTCAAACATTTACTCTAAAGAGGTAGTGGATTTGTATTCGGAAAAACCAAAGTCTCACATTGGCCAGAAATAAGGCCTAAGTAGAGCCTTAGAAGTTAGCTTGGTGGAGTTGAGACTGCTGTATTATCCATGAACCAAGTTCAGTAGTGTTGGGTGTGAGAAGATGTATTAGAAAAAACTCGTGCGTGAGATAAGGCCTAAATAGAACTTCTAATATCTAGGCAATCTCCTCCTTACAAGCCACTTTTTTTTTTTTTCTTTTTTTTAAATTCAGAATACATATATTTGTTTCAAATAAGCTGTTGCTGCTGATGCTCTTGTTATATTCTATTCTCTGTAGTCTGCTGCTTAGATACAGCTGCTGGTTGTGAGTTTGGGTTCAGATTCTAGTATACAACTCTACATTTTCTAATGTTTACATGGACAAAATTAGTATTTTTTGATGTGAATTAAAAACAGTTTTTGTTCTTTATATTTTAGGAATCAATATTTTTTCTTGATTTAGTGTTATACATTTATTGTGAGCGATATTTGGGTGCTATTCTCATTTTTGGTTGATTCAATTAGAGATCTTACTAATGGGTTGAGCTTTATATTTCAGGTGAAACATAGGTACATGATTACGCCTACCCAAGCATATTCAGATAGAGGAAGAAACCGACCCATGTTATTATTGGAAGGGAGGCAGAAAGCCTCTATTAAATCTGACAGGGGTGGGGGCAATATCCCTAAAAAGTATGACATAGATTATCAAAAAAGAAAGGCTGAGATAGACTTGGAATTGGAAAAGTTAAAGTCCATGTCTTTACAAGAGGTAATCGCATGTGCTGCTCAAGCAGTTGCTGAAGCAGAAGCCGCCATGGCAGAAGCTGAAGAGGCAACAAAGGAGGCAGAGGCTGCAGAAGCAGAAGCTGATGCAGCGGAAGCTATTGCAAAAGCTGCAGAAAAATCACTAAAATCACTGCGGTAA

Protein sequence

>MS.gene70262.t1

MGATRQKWSSEEEAALKAGVVKHGVGKWSKILKDPEFNHVLYIRSNIDLKDKWRNMSLKANGSSSGDNSQLAIKRVRHQAPEQRDDSVAVNFVTTIDDKILDVQPLQVKTDMLEIKGPERSIKRLDNLIVEAISSLNEVDGSNKTTIASFIKNQYCAPADFKNKLSAKLVDLVSSGKLIKVKHRYMITPTQAYSDRGRNRPMLLLEGRQKASIKSDRGGGNIPKKYDIDYQKRKAEIDLELEKLKSMSLQEVIACAAQAVAEAEAAMAEAEEATKEAEAAEAEADAAEAIAKAAEKSLKSLR