Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70362.t1 | XP_003630065.2 | 92.2 | 460 | 21 | 1 | 1 | 460 | 1 | 445 | 3.70E-240 | 840.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70362.t1 | Q9LX16 | 48.0 | 446 | 190 | 11 | 1 | 433 | 1 | 417 | 1.8e-97 | 357.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70362.t1 | G7LAE2 | 92.2 | 460 | 21 | 1 | 1 | 460 | 1 | 445 | 2.7e-240 | 840.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene70362.t1 | TF | EIL |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70362.t1 | MTR_8g091370 | 92.174 | 460 | 21 | 1 | 1 | 460 | 1 | 445 | 0.0 | 801 |
MS.gene70362.t1 | MTR_3g087530 | 52.928 | 444 | 156 | 9 | 19 | 459 | 29 | 422 | 3.95e-144 | 419 |
MS.gene70362.t1 | MTR_5g087790 | 45.455 | 407 | 167 | 8 | 12 | 366 | 39 | 442 | 7.69e-115 | 350 |
MS.gene70362.t1 | MTR_3g078770 | 46.530 | 389 | 145 | 8 | 23 | 356 | 53 | 433 | 2.83e-112 | 344 |
MS.gene70362.t1 | MTR_2g098470 | 56.439 | 264 | 101 | 5 | 16 | 272 | 32 | 288 | 1.64e-95 | 300 |
MS.gene70362.t1 | MTR_6g460640 | 47.082 | 257 | 131 | 3 | 15 | 271 | 36 | 287 | 1.55e-81 | 265 |
MS.gene70362.t1 | MTR_6g060600 | 46.693 | 257 | 132 | 3 | 15 | 271 | 36 | 287 | 9.06e-81 | 263 |
MS.gene70362.t1 | MTR_3g010790 | 45.349 | 258 | 121 | 6 | 73 | 327 | 1 | 241 | 2.24e-70 | 232 |
MS.gene70362.t1 | MTR_1g024420 | 40.187 | 107 | 53 | 2 | 16 | 114 | 4 | 107 | 7.77e-21 | 88.2 |
MS.gene70362.t1 | MTR_7g095580 | 42.188 | 64 | 37 | 0 | 62 | 125 | 1 | 64 | 5.70e-14 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70362.t1 | AT5G10120 | 47.239 | 489 | 197 | 14 | 1 | 457 | 1 | 460 | 5.13e-134 | 395 |
MS.gene70362.t1 | AT5G65100 | 43.619 | 525 | 200 | 12 | 17 | 457 | 33 | 545 | 1.99e-130 | 389 |
MS.gene70362.t1 | AT2G27050 | 45.477 | 409 | 161 | 8 | 16 | 365 | 43 | 448 | 1.66e-114 | 348 |
MS.gene70362.t1 | AT3G20770 | 47.194 | 392 | 157 | 8 | 12 | 356 | 39 | 427 | 1.75e-113 | 347 |
MS.gene70362.t1 | AT1G73730 | 48.710 | 310 | 137 | 5 | 16 | 320 | 20 | 312 | 7.19e-97 | 302 |
MS.gene70362.t1 | AT1G73730 | 48.710 | 310 | 137 | 5 | 16 | 320 | 32 | 324 | 1.13e-96 | 302 |
MS.gene70362.t1 | AT5G21120 | 39.788 | 377 | 180 | 9 | 26 | 363 | 52 | 420 | 2.06e-80 | 258 |
MS.gene70362.t1 | AT5G21120 | 39.788 | 377 | 180 | 9 | 26 | 363 | 52 | 420 | 2.06e-80 | 258 |
MS.gene70362.t1 | AT5G21120 | 39.788 | 377 | 180 | 9 | 26 | 363 | 59 | 427 | 2.68e-80 | 258 |
Find 78 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCATGAAGCAACCTCAATT+TGG | 0.212001 | 4.2:-10597163 | MS.gene70362:CDS |
GTCAGATGATTGGTTAAATA+TGG | 0.212072 | 4.2:-10597402 | MS.gene70362:CDS |
AGAAGATTCCCTCTTGAAAT+AGG | 0.244472 | 4.2:-10597986 | MS.gene70362:CDS |
AAAACCTCATGATTTGAAAA+AGG | 0.251860 | 4.2:-10597873 | MS.gene70362:CDS |
AAATGCATATATGATGAAAT+TGG | 0.270352 | 4.2:+10598082 | None:intergenic |
GATGAAGCAAAGCTTGTTCT+TGG | 0.284476 | 4.2:+10597708 | None:intergenic |
CTTTCTGAAGAACCTGTTAC+TGG | 0.287865 | 4.2:+10598220 | None:intergenic |
TACAAGATTATGGTAGCTTT+TGG | 0.305733 | 4.2:-10597283 | MS.gene70362:CDS |
TTCCCTTGAGCTTCTGTAGC+AGG | 0.356757 | 4.2:+10598407 | None:intergenic |
GACTTGCAAGATACTACTTT+AGG | 0.357446 | 4.2:-10598052 | MS.gene70362:CDS |
GCTCCTCCATGGTGGCCTAA+TGG | 0.358229 | 4.2:-10597959 | MS.gene70362:CDS |
GATATGACATTACAAGATTA+TGG | 0.370644 | 4.2:-10597293 | MS.gene70362:CDS |
CTTCAGAAAGCTTGCGTGAA+TGG | 0.389051 | 4.2:-10598207 | MS.gene70362:CDS |
TGAGCTTCTGTAGCAGGATT+CGG | 0.390190 | 4.2:+10598413 | None:intergenic |
GAGGGATGATGGGAAGTGTT+TGG | 0.401632 | 4.2:+10598138 | None:intergenic |
ATTCCCTCTTGAAATAGGTT+TGG | 0.405477 | 4.2:-10597981 | MS.gene70362:CDS |
TCATGAAGCAACCTCAATTT+GGG | 0.408798 | 4.2:-10597162 | MS.gene70362:CDS |
CTGATGTTGATAAAGTTAGA+AGG | 0.416794 | 4.2:-10597805 | MS.gene70362:CDS |
ATTGCACATGGGAGTGGACT+TGG | 0.420096 | 4.2:-10597237 | MS.gene70362:CDS |
TGTAAGAACAGAGTGATTCA+TGG | 0.427384 | 4.2:+10597462 | None:intergenic |
GAGAAAGGAAAACCAGTAAC+AGG | 0.433253 | 4.2:-10598232 | MS.gene70362:CDS |
CACCACTGTTCTGTTCCATT+AGG | 0.438620 | 4.2:+10597944 | None:intergenic |
CTTCTAACTTTATCAACATC+AGG | 0.442768 | 4.2:+10597806 | None:intergenic |
TTGTTCTTGGTTCATTACTT+TGG | 0.448117 | 4.2:+10597721 | None:intergenic |
CCCATGCACGAATCACTTTG+TGG | 0.451226 | 4.2:+10597512 | None:intergenic |
CTTAATGCGGTCTCTTGCGC+TGG | 0.451346 | 4.2:+10597185 | None:intergenic |
CACCTTCTTCTGATATCTTG+AGG | 0.458091 | 4.2:+10597672 | None:intergenic |
GGATAATGATAAACAGAGTC+AGG | 0.464569 | 4.2:-10597369 | MS.gene70362:CDS |
TACGGTATTGTGCCAGAGAA+AGG | 0.473904 | 4.2:-10598247 | MS.gene70362:CDS |
CTACAGAAGCTCAAGGGAAA+AGG | 0.474169 | 4.2:-10598403 | MS.gene70362:CDS |
CTTTGAAAATCAACAAGAGT+TGG | 0.476438 | 4.2:-10598116 | MS.gene70362:CDS |
TCAAGAGGGAATCTTCTTTG+TGG | 0.478086 | 4.2:+10597992 | None:intergenic |
TAATCTTCATCATGTATTTG+AGG | 0.479390 | 4.2:+10598299 | None:intergenic |
TGGTTAAATATGGATATAGC+AGG | 0.496001 | 4.2:-10597392 | MS.gene70362:CDS |
TGATAAACAGAGTCAGGATC+AGG | 0.497758 | 4.2:-10597363 | MS.gene70362:CDS |
TCTTGAATTGCACATGGGAG+TGG | 0.500811 | 4.2:-10597243 | MS.gene70362:CDS |
AAATAGGTTTGGCTCCTCCA+TGG | 0.512934 | 4.2:-10597970 | MS.gene70362:CDS |
TAAACATGATTTGAATCACT+TGG | 0.514601 | 4.2:-10597633 | MS.gene70362:CDS |
AATCATCTGACAGAAAATCA+TGG | 0.519514 | 4.2:+10597414 | None:intergenic |
CCACAAAGTGATTCGTGCAT+GGG | 0.534919 | 4.2:-10597512 | MS.gene70362:CDS |
GGCTTGGAAAGTTTCTGTGT+TGG | 0.536507 | 4.2:-10597852 | MS.gene70362:CDS |
TCCACAAAGTGATTCGTGCA+TGG | 0.536930 | 4.2:-10597513 | MS.gene70362:CDS |
CAGCTAAAGATAGTGCAACT+TGG | 0.538503 | 4.2:-10597745 | MS.gene70362:CDS |
TCGTAGCACTGAGAAGAGAA+AGG | 0.545622 | 4.2:-10597603 | MS.gene70362:CDS |
ATCTGACAGAAAATCATGGA+AGG | 0.555309 | 4.2:+10597418 | None:intergenic |
ATATGTCAAGTCCCAAATTG+AGG | 0.558592 | 4.2:+10597151 | None:intergenic |
CGTAGCACTGAGAAGAGAAA+GGG | 0.563011 | 4.2:-10597602 | MS.gene70362:CDS |
AGAGGGAATCTTCTTTGTGG+TGG | 0.566976 | 4.2:+10597995 | None:intergenic |
GGTTAAATATGGATATAGCA+GGG | 0.568936 | 4.2:-10597391 | MS.gene70362:CDS |
ATCATGTTTAGTACTACTAG+AGG | 0.570876 | 4.2:+10597646 | None:intergenic |
TAATGGAACAGAACAGTGGT+GGG | 0.582068 | 4.2:-10597942 | MS.gene70362:CDS |
TGCCTCAAGATATCAGAAGA+AGG | 0.584848 | 4.2:-10597674 | MS.gene70362:CDS |
CAAATTCAGTCAAAATGCAC+CGG | 0.585132 | 4.2:-10598170 | MS.gene70362:CDS |
ATGACAATATGCAAAGCTCA+AGG | 0.586274 | 4.2:-10598277 | MS.gene70362:CDS |
CAGAAAGCTTGCGTGAATGG+TGG | 0.590210 | 4.2:-10598204 | MS.gene70362:CDS |
TCTGTTCCATTAGGCCACCA+TGG | 0.598249 | 4.2:+10597953 | None:intergenic |
CAAAAGATGAGGCATCAAGA+AGG | 0.600880 | 4.2:-10598351 | MS.gene70362:CDS |
AAGTGTTTGGAAACTGCATC+CGG | 0.603092 | 4.2:+10598151 | None:intergenic |
GCAAGATCTTGAATTGCACA+TGG | 0.607490 | 4.2:-10597249 | MS.gene70362:CDS |
GTTAAATATGGATATAGCAG+GGG | 0.612665 | 4.2:-10597390 | MS.gene70362:CDS |
AATCCTGCTACAGAAGCTCA+AGG | 0.613828 | 4.2:-10598410 | MS.gene70362:CDS |
GGTTGCTTCATGACTTAATG+CGG | 0.616145 | 4.2:+10597172 | None:intergenic |
CTAATGGAACAGAACAGTGG+TGG | 0.623346 | 4.2:-10597943 | MS.gene70362:CDS |
TCTGACAGAAAATCATGGAA+GGG | 0.626048 | 4.2:+10597419 | None:intergenic |
GGAGCCAAACCTATTTCAAG+AGG | 0.626663 | 4.2:+10597977 | None:intergenic |
GAACAGTGGTGGGGTCAACA+AGG | 0.627644 | 4.2:-10597932 | MS.gene70362:CDS |
TGTTCTTACAGAACAGAACA+AGG | 0.627946 | 4.2:-10597449 | MS.gene70362:CDS |
TAATGAGTCGAGAGAGATCG+TGG | 0.631459 | 4.2:-10597315 | MS.gene70362:CDS |
ATCCTGCTACAGAAGCTCAA+GGG | 0.643091 | 4.2:-10598409 | MS.gene70362:CDS |
TAGGTTTGGCTCCTCCATGG+TGG | 0.654293 | 4.2:-10597967 | MS.gene70362:CDS |
AAACCAACAAGCAAAAGATG+AGG | 0.678086 | 4.2:-10598362 | MS.gene70362:CDS |
AATGGAACAGAACAGTGGTG+GGG | 0.686244 | 4.2:-10597941 | MS.gene70362:CDS |
GAGCCAAACCTATTTCAAGA+GGG | 0.689251 | 4.2:+10597978 | None:intergenic |
CAGTGGTGGGGTCAACAAGG+TGG | 0.693074 | 4.2:-10597929 | MS.gene70362:CDS |
CAAGATCTTGAATTGCACAT+GGG | 0.698747 | 4.2:-10597248 | MS.gene70362:CDS |
GGTGGTTTGTCAGAACAACA+TGG | 0.708986 | 4.2:-10597911 | MS.gene70362:CDS |
GTTCCATTAGGCCACCATGG+AGG | 0.728866 | 4.2:+10597956 | None:intergenic |
GGCCTAATGGAACAGAACAG+TGG | 0.776858 | 4.2:-10597946 | MS.gene70362:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATGCATATATGATGAAAT+TGG | + | chr4.2:10597571-10597590 | None:intergenic | 20.0% |
!!! | AAATCATGAGGTTTTTTATA+AGG | + | chr4.2:10597772-10597791 | None:intergenic | 20.0% |
! | AAAACCTCATGATTTGAAAA+AGG | - | chr4.2:10597777-10597796 | MS.gene70362:CDS | 25.0% |
! | GATATGACATTACAAGATTA+TGG | - | chr4.2:10598357-10598376 | MS.gene70362:CDS | 25.0% |
! | TAAACATGATTTGAATCACT+TGG | - | chr4.2:10598017-10598036 | MS.gene70362:CDS | 25.0% |
! | TAATCTTCATCATGTATTTG+AGG | + | chr4.2:10597354-10597373 | None:intergenic | 25.0% |
!! | ATTTTCAGACAAAAGTTCAA+GGG | - | chr4.2:10598161-10598180 | MS.gene70362:CDS | 25.0% |
!! | TTCTTCTTTTTGTTGATCAA+AGG | + | chr4.2:10597176-10597195 | None:intergenic | 25.0% |
!!! | TGCTGATTTTGATTTTGATA+AGG | - | chr4.2:10598086-10598105 | MS.gene70362:CDS | 25.0% |
AATCATCTGACAGAAAATCA+TGG | + | chr4.2:10598239-10598258 | None:intergenic | 30.0% | |
ATCATGTTTAGTACTACTAG+AGG | + | chr4.2:10598007-10598026 | None:intergenic | 30.0% | |
CTTCTAACTTTATCAACATC+AGG | + | chr4.2:10597847-10597866 | None:intergenic | 30.0% | |
GGTTAAATATGGATATAGCA+GGG | - | chr4.2:10598259-10598278 | MS.gene70362:CDS | 30.0% | |
GTTAAATATGGATATAGCAG+GGG | - | chr4.2:10598260-10598279 | MS.gene70362:CDS | 30.0% | |
TGGTTAAATATGGATATAGC+AGG | - | chr4.2:10598258-10598277 | MS.gene70362:CDS | 30.0% | |
TTGTTCTTGGTTCATTACTT+TGG | + | chr4.2:10597932-10597951 | None:intergenic | 30.0% | |
! | ATGATTTTCTGTCAGATGAT+TGG | - | chr4.2:10598238-10598257 | MS.gene70362:CDS | 30.0% |
! | CTGATGTTGATAAAGTTAGA+AGG | - | chr4.2:10597845-10597864 | MS.gene70362:CDS | 30.0% |
! | CTTTGAAAATCAACAAGAGT+TGG | - | chr4.2:10597534-10597553 | MS.gene70362:CDS | 30.0% |
! | GATTTTCAGACAAAAGTTCA+AGG | - | chr4.2:10598160-10598179 | MS.gene70362:CDS | 30.0% |
! | GTCAGATGATTGGTTAAATA+TGG | - | chr4.2:10598248-10598267 | MS.gene70362:CDS | 30.0% |
! | TACAAGATTATGGTAGCTTT+TGG | - | chr4.2:10598367-10598386 | MS.gene70362:CDS | 30.0% |
!!! | ACTCTTGTTGATTTTCAAAG+AGG | + | chr4.2:10597534-10597553 | None:intergenic | 30.0% |
!!! | CTCTTGTTGATTTTCAAAGA+GGG | + | chr4.2:10597533-10597552 | None:intergenic | 30.0% |
!!! | TCATGAGGTTTTTTATAAGG+TGG | + | chr4.2:10597769-10597788 | None:intergenic | 30.0% |
AAACCAACAAGCAAAAGATG+AGG | - | chr4.2:10597288-10597307 | MS.gene70362:CDS | 35.0% | |
AGAAGATTCCCTCTTGAAAT+AGG | - | chr4.2:10597664-10597683 | MS.gene70362:CDS | 35.0% | |
ATATGTCAAGTCCCAAATTG+AGG | + | chr4.2:10598502-10598521 | None:intergenic | 35.0% | |
ATCTGACAGAAAATCATGGA+AGG | + | chr4.2:10598235-10598254 | None:intergenic | 35.0% | |
ATGACAATATGCAAAGCTCA+AGG | - | chr4.2:10597373-10597392 | MS.gene70362:CDS | 35.0% | |
ATTCCCTCTTGAAATAGGTT+TGG | - | chr4.2:10597669-10597688 | MS.gene70362:CDS | 35.0% | |
CAAATTCAGTCAAAATGCAC+CGG | - | chr4.2:10597480-10597499 | MS.gene70362:CDS | 35.0% | |
CAAGATCTTGAATTGCACAT+GGG | - | chr4.2:10598402-10598421 | MS.gene70362:CDS | 35.0% | |
CTCATGATTTGAAAAAGGCT+TGG | - | chr4.2:10597782-10597801 | MS.gene70362:CDS | 35.0% | |
GACTTGCAAGATACTACTTT+AGG | - | chr4.2:10597598-10597617 | MS.gene70362:CDS | 35.0% | |
GGATAATGATAAACAGAGTC+AGG | - | chr4.2:10598281-10598300 | MS.gene70362:CDS | 35.0% | |
TCATGAAGCAACCTCAATTT+GGG | - | chr4.2:10598488-10598507 | MS.gene70362:CDS | 35.0% | |
TCTGACAGAAAATCATGGAA+GGG | + | chr4.2:10598234-10598253 | None:intergenic | 35.0% | |
TGTAAGAACAGAGTGATTCA+TGG | + | chr4.2:10598191-10598210 | None:intergenic | 35.0% | |
TGTTCTTACAGAACAGAACA+AGG | - | chr4.2:10598201-10598220 | MS.gene70362:CDS | 35.0% | |
! | GATTTTCAAAGAGGGATGAT+GGG | + | chr4.2:10597525-10597544 | None:intergenic | 35.0% |
! | TGATTTTCAAAGAGGGATGA+TGG | + | chr4.2:10597526-10597545 | None:intergenic | 35.0% |
!! | AAAGCTCAAGGTTTTGTCTA+CGG | - | chr4.2:10597385-10597404 | MS.gene70362:CDS | 35.0% |
!!! | CAAGCCTTTTTCAAATCATG+AGG | + | chr4.2:10597784-10597803 | None:intergenic | 35.0% |
!!! | GAGGTTTTTTATAAGGTGGT+GGG | + | chr4.2:10597765-10597784 | None:intergenic | 35.0% |
!!! | TGAGGTTTTTTATAAGGTGG+TGG | + | chr4.2:10597766-10597785 | None:intergenic | 35.0% |
AAGTGTTTGGAAACTGCATC+CGG | + | chr4.2:10597502-10597521 | None:intergenic | 40.0% | |
CACCTTCTTCTGATATCTTG+AGG | + | chr4.2:10597981-10598000 | None:intergenic | 40.0% | |
CAGCTAAAGATAGTGCAACT+TGG | - | chr4.2:10597905-10597924 | MS.gene70362:CDS | 40.0% | |
GAGAAAGGAAAACCAGTAAC+AGG | - | chr4.2:10597418-10597437 | MS.gene70362:CDS | 40.0% | |
GAGCCAAACCTATTTCAAGA+GGG | + | chr4.2:10597675-10597694 | None:intergenic | 40.0% | |
GCAAGATCTTGAATTGCACA+TGG | - | chr4.2:10598401-10598420 | MS.gene70362:CDS | 40.0% | |
GGACTTGGAAAAAGATAACG+TGG | - | chr4.2:10598428-10598447 | MS.gene70362:CDS | 40.0% | |
GGTTGCTTCATGACTTAATG+CGG | + | chr4.2:10598481-10598500 | None:intergenic | 40.0% | |
GTCATGAAGCAACCTCAATT+TGG | - | chr4.2:10598487-10598506 | MS.gene70362:CDS | 40.0% | |
TAATGGAACAGAACAGTGGT+GGG | - | chr4.2:10597708-10597727 | MS.gene70362:CDS | 40.0% | |
TCAAGAGGGAATCTTCTTTG+TGG | + | chr4.2:10597661-10597680 | None:intergenic | 40.0% | |
TGATAAACAGAGTCAGGATC+AGG | - | chr4.2:10598287-10598306 | MS.gene70362:CDS | 40.0% | |
TGCCTCAAGATATCAGAAGA+AGG | - | chr4.2:10597976-10597995 | MS.gene70362:CDS | 40.0% | |
! | ATGCCTCATCTTTTGCTTGT+TGG | + | chr4.2:10597294-10597313 | None:intergenic | 40.0% |
! | CAAAAGATGAGGCATCAAGA+AGG | - | chr4.2:10597299-10597318 | MS.gene70362:CDS | 40.0% |
! | CTTTCTGAAGAACCTGTTAC+TGG | + | chr4.2:10597433-10597452 | None:intergenic | 40.0% |
! | GATGAAGCAAAGCTTGTTCT+TGG | + | chr4.2:10597945-10597964 | None:intergenic | 40.0% |
!!! | GTTACTGGTTTTCCTTTCTC+TGG | + | chr4.2:10597418-10597437 | None:intergenic | 40.0% |
AATCCTGCTACAGAAGCTCA+AGG | - | chr4.2:10597240-10597259 | MS.gene70362:CDS | 45.0% | |
AATGGAACAGAACAGTGGTG+GGG | - | chr4.2:10597709-10597728 | MS.gene70362:CDS | 45.0% | |
AGAGGGAATCTTCTTTGTGG+TGG | + | chr4.2:10597658-10597677 | None:intergenic | 45.0% | |
ATCCTGCTACAGAAGCTCAA+GGG | - | chr4.2:10597241-10597260 | MS.gene70362:CDS | 45.0% | |
CACCACTGTTCTGTTCCATT+AGG | + | chr4.2:10597709-10597728 | None:intergenic | 45.0% | |
CCACAAAGTGATTCGTGCAT+GGG | - | chr4.2:10598138-10598157 | MS.gene70362:CDS | 45.0% | |
CTAATGGAACAGAACAGTGG+TGG | - | chr4.2:10597707-10597726 | MS.gene70362:CDS | 45.0% | |
CTACAGAAGCTCAAGGGAAA+AGG | - | chr4.2:10597247-10597266 | MS.gene70362:CDS | 45.0% | |
CTTCAGAAAGCTTGCGTGAA+TGG | - | chr4.2:10597443-10597462 | MS.gene70362:CDS | 45.0% | |
GGAGCCAAACCTATTTCAAG+AGG | + | chr4.2:10597676-10597695 | None:intergenic | 45.0% | |
GGCTTGGAAAGTTTCTGTGT+TGG | - | chr4.2:10597798-10597817 | MS.gene70362:CDS | 45.0% | |
TAATGAGTCGAGAGAGATCG+TGG | - | chr4.2:10598335-10598354 | MS.gene70362:CDS | 45.0% | |
TACGGTATTGTGCCAGAGAA+AGG | - | chr4.2:10597403-10597422 | MS.gene70362:CDS | 45.0% | |
TCCACAAAGTGATTCGTGCA+TGG | - | chr4.2:10598137-10598156 | MS.gene70362:CDS | 45.0% | |
TCTTGAATTGCACATGGGAG+TGG | - | chr4.2:10598407-10598426 | MS.gene70362:CDS | 45.0% | |
TGAGCTTCTGTAGCAGGATT+CGG | + | chr4.2:10597240-10597259 | None:intergenic | 45.0% | |
! | AAATAGGTTTGGCTCCTCCA+TGG | - | chr4.2:10597680-10597699 | MS.gene70362:CDS | 45.0% |
! | CGTAGCACTGAGAAGAGAAA+GGG | - | chr4.2:10598048-10598067 | MS.gene70362:CDS | 45.0% |
! | GGTGGTTTGTCAGAACAACA+TGG | - | chr4.2:10597739-10597758 | MS.gene70362:CDS | 45.0% |
! | TCGTAGCACTGAGAAGAGAA+AGG | - | chr4.2:10598047-10598066 | MS.gene70362:CDS | 45.0% |
CAGAAAGCTTGCGTGAATGG+TGG | - | chr4.2:10597446-10597465 | MS.gene70362:CDS | 50.0% | |
CCCATGCACGAATCACTTTG+TGG | + | chr4.2:10598141-10598160 | None:intergenic | 50.0% | |
GGCCTAATGGAACAGAACAG+TGG | - | chr4.2:10597704-10597723 | MS.gene70362:CDS | 50.0% | |
TCTGTTCCATTAGGCCACCA+TGG | + | chr4.2:10597700-10597719 | None:intergenic | 50.0% | |
TTCCCTTGAGCTTCTGTAGC+AGG | + | chr4.2:10597246-10597265 | None:intergenic | 50.0% | |
! | ACGAGCTGAAAAAGCGCATG+TGG | - | chr4.2:10597209-10597228 | MS.gene70362:CDS | 50.0% |
! | ATTGCACATGGGAGTGGACT+TGG | - | chr4.2:10598413-10598432 | MS.gene70362:CDS | 50.0% |
! | GCTGAAAAAGCGCATGTGGA+AGG | - | chr4.2:10597213-10597232 | MS.gene70362:CDS | 50.0% |
!! | GAGGGATGATGGGAAGTGTT+TGG | + | chr4.2:10597515-10597534 | None:intergenic | 50.0% |
CTTAATGCGGTCTCTTGCGC+TGG | + | chr4.2:10598468-10598487 | None:intergenic | 55.0% | |
GTTCCATTAGGCCACCATGG+AGG | + | chr4.2:10597697-10597716 | None:intergenic | 55.0% | |
! | GAACAGTGGTGGGGTCAACA+AGG | - | chr4.2:10597718-10597737 | MS.gene70362:CDS | 55.0% |
! | TAGGTTTGGCTCCTCCATGG+TGG | - | chr4.2:10597683-10597702 | MS.gene70362:CDS | 55.0% |
GCTCCTCCATGGTGGCCTAA+TGG | - | chr4.2:10597691-10597710 | MS.gene70362:CDS | 60.0% | |
! | CAGTGGTGGGGTCAACAAGG+TGG | - | chr4.2:10597721-10597740 | MS.gene70362:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 10597145 | 10598527 | 10597145 | ID=MS.gene70362 |
chr4.2 | mRNA | 10597145 | 10598527 | 10597145 | ID=MS.gene70362.t1;Parent=MS.gene70362 |
chr4.2 | exon | 10597145 | 10598527 | 10597145 | ID=MS.gene70362.t1.exon1;Parent=MS.gene70362.t1 |
chr4.2 | CDS | 10597145 | 10598527 | 10597145 | ID=cds.MS.gene70362.t1;Parent=MS.gene70362.t1 |
Gene Sequence |
Protein sequence |