AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70429

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70429.t1 MTR_4g094908 90.909 55 5 0 1 55 261 315 3.50e-31 114
MS.gene70429.t1 MTR_5g016610 81.818 55 10 0 1 55 194 248 4.55e-28 104
MS.gene70429.t1 MTR_1g070455 78.182 55 12 0 1 55 288 342 1.40e-26 102
MS.gene70429.t1 MTR_1g009613 77.778 54 12 0 2 55 258 311 6.07e-26 100
MS.gene70429.t1 MTR_4g127040 72.727 55 15 0 1 55 240 294 4.97e-23 92.4
MS.gene70429.t1 MTR_1g054495 54.286 70 32 0 51 120 139 208 1.03e-19 82.0
MS.gene70429.t1 MTR_0117s0040 59.322 59 24 0 1 59 69 127 2.11e-19 81.6
MS.gene70429.t1 MTR_5g018660 71.429 49 14 0 54 102 51 99 3.28e-19 77.8
MS.gene70429.t1 MTR_3g108960 59.322 59 24 0 1 59 309 367 8.61e-19 81.6
MS.gene70429.t1 MTR_7g109600 60.784 51 19 1 6 55 52 102 5.06e-17 75.5
MS.gene70429.t1 MTR_8g087000 61.224 49 19 0 7 55 78 126 1.42e-16 73.9
MS.gene70429.t1 MTR_8g087000 61.224 49 19 0 7 55 77 125 1.52e-16 73.9
MS.gene70429.t1 MTR_2g032030 58.182 55 22 1 2 55 262 316 3.76e-16 74.3
MS.gene70429.t1 MTR_2g032030 58.182 55 22 1 2 55 262 316 4.33e-16 74.3
MS.gene70429.t1 MTR_2g083870 61.224 49 19 0 7 55 81 129 1.90e-15 71.2
MS.gene70429.t1 MTR_8g028565 57.692 52 22 0 4 55 153 204 4.40e-15 70.9
MS.gene70429.t1 MTR_2g016770 59.184 49 20 0 7 55 36 84 5.47e-15 69.3
MS.gene70429.t1 MTR_2g016770 59.184 49 20 0 7 55 28 76 5.59e-15 68.9
MS.gene70429.t1 MTR_7g079040 52.727 55 26 0 1 55 149 203 1.15e-14 69.7
MS.gene70429.t1 MTR_1g099600 52.830 53 25 0 3 55 182 234 2.84e-14 68.6
MS.gene70429.t1 MTR_4g130900 53.846 52 23 1 4 55 357 407 3.94e-13 65.9
MS.gene70429.t1 MTR_5g094430 53.846 52 23 1 3 54 361 411 1.00e-12 64.7
MS.gene70429.t1 MTR_3g056100 53.846 52 23 1 3 54 399 449 1.42e-12 64.3
MS.gene70429.t1 MTR_8g067635 64.286 42 15 0 4 45 347 388 1.57e-12 63.9
MS.gene70429.t1 MTR_7g011820 55.769 52 22 1 3 54 407 457 1.94e-12 63.9
MS.gene70429.t1 MTR_3g031220 55.769 52 22 1 3 54 362 412 3.78e-12 62.8
MS.gene70429.t1 MTR_4g013260 53.846 52 23 1 3 54 333 383 4.14e-12 62.8
MS.gene70429.t1 MTR_5g094430 53.846 52 23 1 3 54 249 299 4.24e-12 62.8
MS.gene70429.t1 MTR_5g094430 53.846 52 23 1 3 54 227 277 4.59e-12 62.8
MS.gene70429.t1 MTR_3g056100 53.846 52 23 1 3 54 255 305 7.60e-12 62.0
MS.gene70429.t1 MTR_3g056100 53.846 52 23 1 3 54 268 318 7.73e-12 62.0
MS.gene70429.t1 MTR_2g024350 58.140 43 18 0 3 45 5 47 8.02e-12 60.8
MS.gene70429.t1 MTR_2g024380 53.061 49 23 0 7 55 252 300 8.20e-12 62.0
MS.gene70429.t1 MTR_3g009470 53.846 52 23 1 3 54 492 542 8.48e-12 62.0
MS.gene70429.t1 MTR_3g056100 53.846 52 23 1 3 54 412 462 8.51e-12 62.0
MS.gene70429.t1 MTR_4g007060 52.941 51 24 0 4 54 126 176 1.45e-11 60.8
MS.gene70429.t1 MTR_4g007060 52.941 51 24 0 4 54 160 210 1.51e-11 60.8
MS.gene70429.t1 MTR_1g015140 48.148 54 27 1 1 54 97 149 1.52e-11 59.3
MS.gene70429.t1 MTR_4g094412 52.083 48 23 0 7 54 244 291 1.99e-11 60.8
MS.gene70429.t1 MTR_4g094412 52.083 48 23 0 7 54 235 282 2.06e-11 60.8
MS.gene70429.t1 MTR_8g098945 61.538 39 15 0 7 45 130 168 2.16e-11 60.1
MS.gene70429.t1 MTR_2g023930 47.170 53 28 0 2 54 301 353 2.83e-11 60.5
MS.gene70429.t1 MTR_3g106060 50.000 48 24 0 7 54 139 186 3.54e-11 59.7
MS.gene70429.t1 MTR_8g067650 61.905 42 16 0 4 45 337 378 3.95e-11 60.1
MS.gene70429.t1 MTR_2g088000 45.283 53 29 0 2 54 345 397 5.16e-11 59.7
MS.gene70429.t1 MTR_4g132430 47.170 53 28 0 2 54 257 309 5.80e-11 59.7
MS.gene70429.t1 MTR_3g053330 47.170 53 28 0 2 54 247 299 5.97e-11 59.3
MS.gene70429.t1 MTR_7g100510 47.170 53 27 1 2 54 357 408 6.04e-11 59.3
MS.gene70429.t1 MTR_5g074400 52.830 53 24 1 3 55 417 468 6.53e-11 59.3
MS.gene70429.t1 MTR_7g080020 63.636 44 15 1 3 46 490 532 6.87e-11 59.3
MS.gene70429.t1 MTR_7g109800 54.167 48 21 1 7 54 146 192 9.07e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70429.t1 AT2G23320 81.818 55 10 0 1 55 235 289 3.69e-29 108
MS.gene70429.t1 AT4G24240 81.818 55 10 0 1 55 276 330 1.24e-27 105
MS.gene70429.t1 AT2G24570 78.182 55 12 0 1 55 238 292 2.30e-27 103
MS.gene70429.t1 AT4G31550 78.182 55 12 0 1 55 241 295 3.97e-27 103
MS.gene70429.t1 AT4G31550 78.182 55 12 0 1 55 240 294 4.07e-27 103
MS.gene70429.t1 AT3G04670 78.182 55 12 0 1 55 257 311 5.01e-27 103
MS.gene70429.t1 AT5G28650 76.364 55 13 0 1 55 257 311 1.70e-26 102
MS.gene70429.t1 AT2G30590 76.364 55 13 0 1 55 308 362 1.08e-25 100
MS.gene70429.t1 AT1G29280 60.714 56 20 1 2 55 68 123 5.04e-19 80.9
MS.gene70429.t1 AT2G34830 58.182 55 22 1 2 55 219 273 3.17e-16 74.7
MS.gene70429.t1 AT2G34830 58.182 55 22 1 2 55 210 264 3.41e-16 74.3
MS.gene70429.t1 AT3G58710 63.265 49 18 0 7 55 72 120 6.85e-16 72.8
MS.gene70429.t1 AT3G58710 63.265 49 18 0 7 55 71 119 6.92e-16 72.4
MS.gene70429.t1 AT1G30650 58.182 55 22 1 2 55 212 266 2.12e-15 72.4
MS.gene70429.t1 AT2G04880 55.769 52 22 1 3 54 304 354 2.94e-14 68.9
MS.gene70429.t1 AT2G04880 55.769 52 22 1 3 54 280 330 3.83e-14 68.6
MS.gene70429.t1 AT4G01250 53.846 52 24 0 4 55 126 177 4.65e-14 67.8
MS.gene70429.t1 AT4G30935 49.091 55 27 1 4 58 329 382 2.17e-13 66.6
MS.gene70429.t1 AT2G38470 54.717 53 23 1 3 55 359 410 5.15e-13 65.5
MS.gene70429.t1 AT5G45050 52.941 51 24 0 5 55 1040 1090 7.82e-13 65.1
MS.gene70429.t1 AT5G45050 52.941 51 24 0 5 55 1179 1229 7.88e-13 65.1
MS.gene70429.t1 AT5G45050 52.941 51 24 0 5 55 1151 1201 8.18e-13 65.1
MS.gene70429.t1 AT5G52830 50.943 53 26 0 3 55 162 214 9.06e-13 64.7
MS.gene70429.t1 AT4G23550 60.465 43 17 0 3 45 137 179 3.91e-12 62.8
MS.gene70429.t1 AT4G26440 59.574 47 18 1 3 49 369 414 4.33e-12 62.8
MS.gene70429.t1 AT5G26170 51.923 52 24 1 3 54 110 160 4.65e-12 60.8
MS.gene70429.t1 AT4G26640 52.830 53 24 1 3 55 202 253 8.62e-12 62.0
MS.gene70429.t1 AT4G26640 52.830 53 24 1 3 55 202 253 8.62e-12 62.0
MS.gene70429.t1 AT4G26640 52.830 53 24 1 3 55 202 253 8.62e-12 62.0
MS.gene70429.t1 AT4G26640 52.830 53 24 1 3 55 202 253 8.62e-12 62.0
MS.gene70429.t1 AT4G26640 52.830 53 24 1 3 55 306 357 9.62e-12 62.0
MS.gene70429.t1 AT4G26640 52.830 53 24 1 3 55 378 429 1.04e-11 61.6
MS.gene70429.t1 AT4G26640 52.830 53 24 1 3 55 338 389 1.09e-11 61.6
MS.gene70429.t1 AT5G56270 53.846 52 23 1 3 54 484 534 1.31e-11 61.6
MS.gene70429.t1 AT1G13960 53.846 52 23 1 3 54 406 456 1.52e-11 61.2
MS.gene70429.t1 AT1G62300 47.170 53 28 0 2 54 308 360 2.07e-11 60.8
MS.gene70429.t1 AT5G07100 53.846 52 23 1 3 54 138 188 2.95e-11 59.3
MS.gene70429.t1 AT5G07100 53.846 52 23 1 3 54 138 188 2.95e-11 59.3
MS.gene70429.t1 AT5G07100 53.846 52 23 1 3 54 138 188 2.95e-11 59.3
MS.gene70429.t1 AT5G07100 53.846 52 23 1 3 54 138 188 2.95e-11 59.3
MS.gene70429.t1 AT3G01080 52.830 53 24 1 2 54 302 353 3.01e-11 60.5
MS.gene70429.t1 AT3G01080 52.830 53 24 1 2 54 340 391 3.05e-11 60.5
MS.gene70429.t1 AT4G22070 47.170 53 28 0 2 54 293 345 3.47e-11 60.1
MS.gene70429.t1 AT4G22070 47.170 53 28 0 2 54 293 345 3.47e-11 60.1
MS.gene70429.t1 AT4G22070 47.170 53 28 0 2 54 293 345 3.47e-11 60.1
MS.gene70429.t1 AT4G22070 47.170 53 28 0 2 54 293 345 3.47e-11 60.1
MS.gene70429.t1 AT5G15130 52.083 48 23 0 7 54 228 275 3.76e-11 60.1
MS.gene70429.t1 AT5G15130 52.083 48 23 0 7 54 186 233 4.08e-11 60.1
MS.gene70429.t1 AT1G68150 52.083 48 23 0 7 54 236 283 4.34e-11 59.7
MS.gene70429.t1 AT2G23320 88.462 26 3 0 1 26 235 260 4.81e-11 59.3
MS.gene70429.t1 AT5G07100 53.846 52 23 1 3 54 231 281 5.20e-11 59.3
MS.gene70429.t1 AT1G55600 52.083 48 22 1 7 54 308 354 6.00e-11 59.7
MS.gene70429.t1 AT1G13960 52.830 53 24 1 3 55 253 304 6.85e-11 59.3
MS.gene70429.t1 AT4G04450 45.283 53 29 0 2 54 288 340 7.84e-11 59.3

Find 29 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAAATATACAACTCTTAT+AGG 0.177807 3.1:+66211275 MS.gene70429:CDS
TGGATGAGGTGAACCTTTAA+TGG 0.228013 3.1:-66210426 None:intergenic
TTATAGGTACATATGAAAAT+TGG 0.250708 3.1:+66212181 MS.gene70429:intron
CAGGTGTTGCCATCTAAATT+TGG 0.293092 3.1:+66211161 MS.gene70429:intron
CGCTCTACATGCTTTCTTGC+TGG 0.297065 3.1:-66210800 None:intergenic
TTACACCAGATGATTATTCT+TGG 0.297422 3.1:+66210384 MS.gene70429:CDS
AAGACTTTAAAGTTCTTATT+CGG 0.299472 3.1:+66211246 MS.gene70429:CDS
GATTATTCTTGGAGAAAATA+TGG 0.308918 3.1:+66210395 MS.gene70429:CDS
CAACTCTTATAGGACTTGAT+TGG 0.329936 3.1:+66211285 MS.gene70429:CDS
TATGGTCAGAAACCCATTAA+AGG 0.330566 3.1:+66210413 MS.gene70429:CDS
GGATGAGGTGAACCTTTAAT+GGG 0.399396 3.1:-66210425 None:intergenic
ACCTTGAAGCGGATGACTCC+TGG 0.399741 3.1:-66211338 None:intergenic
TTGTCATGTTGCAGTGATAA+TGG 0.400116 3.1:+66211215 MS.gene70429:CDS
CTGCACCCTATTGCAACCAT+TGG 0.405092 3.1:+66211791 MS.gene70429:CDS
AGCAGCCCAATGGTTGCAAT+AGG 0.417137 3.1:-66211797 None:intergenic
GCCAGGAGTCATCCGCTTCA+AGG 0.456651 3.1:+66211337 MS.gene70429:CDS
TTTCTCCAAGAATAATCATC+TGG 0.457317 3.1:-66210389 None:intergenic
AACTCTTATAGGACTTGATT+GGG 0.462911 3.1:+66211286 MS.gene70429:CDS
TGCACCCTATTGCAACCATT+GGG 0.468149 3.1:+66211792 MS.gene70429:CDS
TTCAAGTGCAATAGTGTGAG+AGG 0.486384 3.1:+66210773 MS.gene70429:CDS
GCAGCCCAATGGTTGCAATA+GGG 0.499493 3.1:-66211796 None:intergenic
TTGAAACTGTCAGCAAAGCT+TGG 0.504526 3.1:+66211768 MS.gene70429:intron
CAATCTAATTACTTCCAGCC+AGG 0.524737 3.1:+66211320 MS.gene70429:CDS
TCTTGATGATGCTTCTATGC+TGG 0.531866 3.1:+66210826 MS.gene70429:CDS
TGAAGCGGATGACTCCTGGC+TGG 0.564886 3.1:-66211334 None:intergenic
AATTGAAAGTACCTTGGATG+AGG 0.611960 3.1:-66210440 None:intergenic
TTAAAGGTTCACCTCATCCA+AGG 0.614226 3.1:+66210429 MS.gene70429:CDS
GAGGAATCACAGCAGCCCAA+TGG 0.618940 3.1:-66211807 None:intergenic
TCAAGTGCAATAGTGTGAGA+GGG 0.654654 3.1:+66210774 MS.gene70429:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGAATTTAAAGTAATAT+TGG + chr3.1:66211920-66211939 MS.gene70429:intron 10.0%
!! ATTTAGCAAAAATAAATTTG+TGG - chr3.1:66212087-66212106 None:intergenic 15.0%
!! TTATGAATGATTATGATTAT+TGG + chr3.1:66210638-66210657 MS.gene70429:intron 15.0%
!! TTGTTAACTTATGAATTTAT+AGG + chr3.1:66212165-66212184 MS.gene70429:intron 15.0%
!!! TAAGTACCATTTTATATTAA+TGG + chr3.1:66211585-66211604 MS.gene70429:intron 15.0%
!!! TTTAACAATATGTATTTCTA+TGG + chr3.1:66211478-66211497 MS.gene70429:intron 15.0%
!!! TTTTCAATTATTCAATTTTC+AGG + chr3.1:66211142-66211161 MS.gene70429:intron 15.0%
!! AAAAATCCTGATATTAATAC+TGG - chr3.1:66212054-66212073 None:intergenic 20.0%
!! AAAATCCTGATATTAATACT+GGG - chr3.1:66212053-66212072 None:intergenic 20.0%
!! AAAGAATACAATAGAACAAT+AGG - chr3.1:66211635-66211654 None:intergenic 20.0%
!! ACTAATTAAATGATACAAAC+CGG - chr3.1:66211712-66211731 None:intergenic 20.0%
!! ATAAATAGGTTCATATACAT+AGG - chr3.1:66210500-66210519 None:intergenic 20.0%
!! CATAATCATTCATAAACATT+TGG - chr3.1:66210633-66210652 None:intergenic 20.0%
!! GAAAATATAACTCTAACAAT+AGG - chr3.1:66211511-66211530 None:intergenic 20.0%
!! GATAAATATACAACTCTTAT+AGG + chr3.1:66211275-66211294 MS.gene70429:CDS 20.0%
!! TAAATAGGTTCATATACATA+GGG - chr3.1:66210499-66210518 None:intergenic 20.0%
!! TGATCACCATTAATATAAAA+TGG - chr3.1:66211594-66211613 None:intergenic 20.0%
!! TTATAGGTACATATGAAAAT+TGG + chr3.1:66212181-66212200 MS.gene70429:intron 20.0%
!!! AAGACTTTAAAGTTCTTATT+CGG + chr3.1:66211246-66211265 MS.gene70429:CDS 20.0%
!!! ATGTTAGTACATTTTCAAAA+TGG + chr3.1:66210936-66210955 MS.gene70429:intron 20.0%
!!! ATTTGACTTTTTTTGTGTAT+TGG + chr3.1:66210670-66210689 MS.gene70429:intron 20.0%
!!! TAATTTTGGGAACAATAATA+GGG + chr3.1:66210745-66210764 MS.gene70429:intron 20.0%
!!! TTTGACTTTTTTTGTGTATT+GGG + chr3.1:66210671-66210690 MS.gene70429:intron 20.0%
!!! TTTTCAAAATGGTAAATTGT+TGG + chr3.1:66210947-66210966 MS.gene70429:intron 20.0%
! AAAAAGTCACCAAATTTAGA+TGG - chr3.1:66211173-66211192 None:intergenic 25.0%
! AAATAGGTTCATATACATAG+GGG - chr3.1:66210498-66210517 None:intergenic 25.0%
! AACTGAAGTAGAAATATAAG+AGG - chr3.1:66211565-66211584 None:intergenic 25.0%
! ATAGCTACTATTATTAGATG+AGG + chr3.1:66212004-66212023 MS.gene70429:intron 25.0%
! GATTATTCTTGGAGAAAATA+TGG + chr3.1:66210395-66210414 MS.gene70429:CDS 25.0%
!! ACAATATGTATTTCTATGGT+TGG + chr3.1:66211482-66211501 MS.gene70429:intron 25.0%
!! AGACTACTCAAAATTTTAAG+TGG + chr3.1:66210606-66210625 MS.gene70429:intron 25.0%
!!! AATTTTGGGAACAATAATAG+GGG + chr3.1:66210746-66210765 MS.gene70429:intron 25.0%
!!! GTAATTTTGGGAACAATAAT+AGG + chr3.1:66210744-66210763 MS.gene70429:intron 25.0%
!!! TAATTGAATTGAAAGTACCT+TGG - chr3.1:66210449-66210468 None:intergenic 25.0%
!!! TGCTGATTTTGTGTAATTTT+GGG + chr3.1:66210732-66210751 MS.gene70429:intron 25.0%
AACTCTTATAGGACTTGATT+GGG + chr3.1:66211286-66211305 MS.gene70429:CDS 30.0%
AGATGGTAGTATATACAAAC+TGG - chr3.1:66211662-66211681 None:intergenic 30.0%
AGCAATTTATAAGAGACTTC+AGG - chr3.1:66211889-66211908 None:intergenic 30.0%
CAAAATGGTAAATTGTTGGT+TGG + chr3.1:66210951-66210970 MS.gene70429:intron 30.0%
TACTCAATGTTGAAGGAAAT+TGG + chr3.1:66211001-66211020 MS.gene70429:intron 30.0%
TCTATGAGTCTTTGTAATCA+AGG + chr3.1:66211529-66211548 MS.gene70429:intron 30.0%
TTACACCAGATGATTATTCT+TGG + chr3.1:66210384-66210403 MS.gene70429:CDS 30.0%
TTTCTCCAAGAATAATCATC+TGG - chr3.1:66210392-66210411 None:intergenic 30.0%
! GATGTTTTACTCAATGTTGA+AGG + chr3.1:66210994-66211013 MS.gene70429:intron 30.0%
! TATACTACCATCTATGCTTT+TGG + chr3.1:66211669-66211688 MS.gene70429:intron 30.0%
! TTTGAAACCAAAAGCATAGA+TGG - chr3.1:66211679-66211698 None:intergenic 30.0%
!! TGGTGGTTGTTTAATTTTGA+GGG + chr3.1:66211021-66211040 MS.gene70429:intron 30.0%
!! TTGGTGGTTGTTTAATTTTG+AGG + chr3.1:66211020-66211039 MS.gene70429:intron 30.0%
!!! GACTTGACAGTTACTTTTTT+GGG - chr3.1:66211842-66211861 None:intergenic 30.0%
!!! GTGCTGATTTTGTGTAATTT+TGG + chr3.1:66210731-66210750 MS.gene70429:intron 30.0%
!!! TCATTGTAGTTTTGACTCTT+TGG + chr3.1:66211959-66211978 MS.gene70429:intron 30.0%
!!! TGACTTGACAGTTACTTTTT+TGG - chr3.1:66211843-66211862 None:intergenic 30.0%
!!! TTTTTTTGCTAACCTTGAAG+CGG - chr3.1:66211352-66211371 None:intergenic 30.0%
ATGCTGGTAGTTACATATGA+AGG + chr3.1:66210842-66210861 MS.gene70429:intron 35.0%
CAACTCTTATAGGACTTGAT+TGG + chr3.1:66211285-66211304 MS.gene70429:CDS 35.0%
GGTAGTATATACAAACTGGT+AGG - chr3.1:66211658-66211677 None:intergenic 35.0%
TATGGTCAGAAACCCATTAA+AGG + chr3.1:66210413-66210432 MS.gene70429:CDS 35.0%
TCAATGTTGAAGGAAATTGG+TGG + chr3.1:66211004-66211023 MS.gene70429:intron 35.0%
TGACACCCAGTATTAATATC+AGG + chr3.1:66212045-66212064 MS.gene70429:intron 35.0%
TGCTGACAGTTTCAATTGAT+AGG - chr3.1:66211763-66211782 None:intergenic 35.0%
TTATCACTGTCACAATGTTC+TGG - chr3.1:66211112-66211131 None:intergenic 35.0%
TTGTCATGTTGCAGTGATAA+TGG + chr3.1:66211215-66211234 MS.gene70429:CDS 35.0%
! GGTAAATTGTTGGTTGGTTA+TGG + chr3.1:66210957-66210976 MS.gene70429:intron 35.0%
!! AATTGAAAGTACCTTGGATG+AGG - chr3.1:66210443-66210462 None:intergenic 35.0%
!!! TAGTTTTGACTCTTTGGAGA+TGG + chr3.1:66211965-66211984 MS.gene70429:intron 35.0%
AATGCGTGAACTTAACCATC+AGG - chr3.1:66211048-66211067 None:intergenic 40.0%
ACCTCTAATCGTTTGGTCTA+AGG + chr3.1:66211419-66211438 MS.gene70429:intron 40.0%
AGGTTCATATACATAGGGGA+AGG - chr3.1:66210494-66210513 None:intergenic 40.0%
ATGCGTGAACTTAACCATCA+GGG - chr3.1:66211047-66211066 None:intergenic 40.0%
CAATCTAATTACTTCCAGCC+AGG + chr3.1:66211320-66211339 MS.gene70429:CDS 40.0%
GGATGAGGTGAACCTTTAAT+GGG - chr3.1:66210428-66210447 None:intergenic 40.0%
GGTTCATATACATAGGGGAA+GGG - chr3.1:66210493-66210512 None:intergenic 40.0%
GGTTTCAAACTAGCATCTAC+CGG + chr3.1:66211690-66211709 MS.gene70429:intron 40.0%
TAGACATAGCACACACTGAA+TGG - chr3.1:66211377-66211396 None:intergenic 40.0%
TCAAGTGCAATAGTGTGAGA+GGG + chr3.1:66210774-66210793 MS.gene70429:CDS 40.0%
TGATGAATCTTGTGAGTGAG+TGG + chr3.1:66210709-66210728 MS.gene70429:intron 40.0%
TGCATCTACCTCTAATCGTT+TGG + chr3.1:66211412-66211431 MS.gene70429:intron 40.0%
TGGATGAGGTGAACCTTTAA+TGG - chr3.1:66210429-66210448 None:intergenic 40.0%
TTAAAGGTTCACCTCATCCA+AGG + chr3.1:66210429-66210448 MS.gene70429:CDS 40.0%
TTCAAGTGCAATAGTGTGAG+AGG + chr3.1:66210773-66210792 MS.gene70429:CDS 40.0%
TTGAAACTGTCAGCAAAGCT+TGG + chr3.1:66211768-66211787 MS.gene70429:intron 40.0%
! CAGGTGTTGCCATCTAAATT+TGG + chr3.1:66211161-66211180 MS.gene70429:intron 40.0%
!! TCTTGATGATGCTTCTATGC+TGG + chr3.1:66210826-66210845 MS.gene70429:CDS 40.0%
!! TTTAATTTTGAGGGCCCTGA+TGG + chr3.1:66211030-66211049 MS.gene70429:intron 40.0%
!!! CTTTTTTGGGAACTCGTATG+AGG - chr3.1:66211829-66211848 None:intergenic 40.0%
GCCTTAGACCAAACGATTAG+AGG - chr3.1:66211423-66211442 None:intergenic 45.0%
GCTAGCATCAGCTGTAGAAA+GGG - chr3.1:66210882-66210901 None:intergenic 45.0%
TGCACCCTATTGCAACCATT+GGG + chr3.1:66211792-66211811 MS.gene70429:CDS 45.0%
TGCTAGCATCAGCTGTAGAA+AGG - chr3.1:66210883-66210902 None:intergenic 45.0%
!! AAAAATTGTATAAAATAAAT+AGG - chr3.1:66210514-66210533 None:intergenic 5.0%
AGCAGCCCAATGGTTGCAAT+AGG - chr3.1:66211800-66211819 None:intergenic 50.0%
CGCTCTACATGCTTTCTTGC+TGG - chr3.1:66210803-66210822 None:intergenic 50.0%
CTGCACCCTATTGCAACCAT+TGG + chr3.1:66211791-66211810 MS.gene70429:CDS 50.0%
GCAGCCCAATGGTTGCAATA+GGG - chr3.1:66211799-66211818 None:intergenic 50.0%
ACCTTGAAGCGGATGACTCC+TGG - chr3.1:66211341-66211360 None:intergenic 55.0%
GAGGAATCACAGCAGCCCAA+TGG - chr3.1:66211810-66211829 None:intergenic 55.0%
GCCAGGAGTCATCCGCTTCA+AGG + chr3.1:66211337-66211356 MS.gene70429:CDS 60.0%
TGAAGCGGATGACTCCTGGC+TGG - chr3.1:66211337-66211356 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 66210374 66212209 66210374 ID=MS.gene70429
chr3.1 mRNA 66210374 66212209 66210374 ID=MS.gene70429.t1;Parent=MS.gene70429
chr3.1 exon 66210374 66210450 66210374 ID=MS.gene70429.t1.exon1;Parent=MS.gene70429.t1
chr3.1 CDS 66210374 66210450 66210374 ID=cds.MS.gene70429.t1;Parent=MS.gene70429.t1
chr3.1 exon 66210766 66210847 66210766 ID=MS.gene70429.t1.exon2;Parent=MS.gene70429.t1
chr3.1 CDS 66210766 66210847 66210766 ID=cds.MS.gene70429.t1;Parent=MS.gene70429.t1
chr3.1 exon 66211164 66211358 66211164 ID=MS.gene70429.t1.exon3;Parent=MS.gene70429.t1
chr3.1 CDS 66211164 66211358 66211164 ID=cds.MS.gene70429.t1;Parent=MS.gene70429.t1
chr3.1 exon 66211781 66211847 66211781 ID=MS.gene70429.t1.exon4;Parent=MS.gene70429.t1
chr3.1 CDS 66211781 66211847 66211781 ID=cds.MS.gene70429.t1;Parent=MS.gene70429.t1
chr3.1 exon 66212187 66212209 66212187 ID=MS.gene70429.t1.exon5;Parent=MS.gene70429.t1
chr3.1 CDS 66212187 66212209 66212187 ID=cds.MS.gene70429.t1;Parent=MS.gene70429.t1
Gene Sequence

>MS.gene70429

ATGGCTGATATTACACCAGATGATTATTCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCACCTCATCCAAGGTACTTTCAATTCAATTACATCATAAATTGATTTTTTTGCCCTTCCCCTATGTATATGAACCTATTTATTTTATACAATTTTTTATGTATTTGTGCTAGATTTCAATTTCTATTTTTGTGCTAGATTTTTTATGTATTTGTGCTAGATAGTAGCTAGACTACTCAAAATTTTAAGTGGACCAAATGTTTATGAATGATTATGATTATTGGATATTTTTTATTTGACTTTTTTTGTGTATTGGGTTTTTGAGTCTATGATGATGAATCTTGTGAGTGAGTGGTGCTGATTTTGTGTAATTTTGGGAACAATAATAGGGGATACTTCAAGTGCAATAGTGTGAGAGGGTATCCAGCAAGAAAGCATGTAGAGCGAGCTCTTGATGATGCTTCTATGCTGGTAGTTACATATGAAGGAGAGCACAATCTCTCCCTTTCTACAGCTGATGCTAGCAATCTCATTTTAGAATCATCATAGTTCATAGTCAATGTTAGTACATTTTCAAAATGGTAAATTGTTGGTTGGTTATGGTTTGTAGAATTAATGATGTTTTACTCAATGTTGAAGGAAATTGGTGGTTGTTTAATTTTGAGGGCCCTGATGGTTAAGTTCACGCATTTTAAAATAAAGAATCATGATTTATTCTTAAAATGTTTTAGTCCAGAACATTGTGACAGTGATAATGAACTATACTTTTCAATTATTCAATTTTCAGGTGTTGCCATCTAAATTTGGTGACTTTTTGAAGCAGATTTTCTATGAGAAGTTGTCATGTTGCAGTGATAATGGATACTACAAAGACTTTAAAGTTCTTATTCGGAACAATGATAAATATACAACTCTTATAGGACTTGATTGGGATCATATTATTCAATCTAATTACTTCCAGCCAGGAGTCATCCGCTTCAAGGTTAGCAAAAAAAATCCATTCAGTGTGTGCTATGTCTATCAGCTTTCAACATCTGCATCTACCTCTAATCGTTTGGTCTAAGGCAATTATCAGTGATGTGTGCTTACAGTTTAATGAATTTTAACAATATGTATTTCTATGGTTGGTTTCCTATTGTTAGAGTTATATTTTCTATGAGTCTTTGTAATCAAGGTTGAACTAAACCTCTTATATTTCTACTTCAGTTTAAGTACCATTTTATATTAATGGTGATCACATTTTGTTATTTAGTTTCCTATTGTTCTATTGTATTCTTTCCTACCAGTTTGTATATACTACCATCTATGCTTTTGGTTTCAAACTAGCATCTACCGGTTTGTATCATTTAATTAGTTTAATAGTAAAATGTAATTGCTATCATTCCTATCAATTGAAACTGTCAGCAAAGCTTGGCTGCACCCTATTGCAACCATTGGGCTGCTGTGATTCCTCATACGAGTTCCCAAAAAAGTAACTGTCAAGTCATCATCTAATGTATCTAATATATTCCTGAAGTCTCTTATAAATTGCTATAATATCTACATTTGAATTTAAAGTAATATTGGCAGTAGTATAACTCATTCATTGTAGTTTTGACTCTTTGGAGATGGCTTGCTTTTTGTTTTGATAGCTACTATTATTAGATGAGGTGTGTTATTTTTTAAATTTGACACCCAGTATTAATATCAGGATTTTTTTTACTTTTACCACAAATTTATTTTTGCTAAATACAAATTCTGCTACACACAGTTTATGAATAGCTTCATTACTTATATAAGTTTGTTGTTTTGTTAACTTATGAATTTATAGGTACATATGAAAATTGGAGATGA
Protein sequence

>MS.gene70429.t1

MADITPDDYSWRKYGQKPIKGSPHPRGYFKCNSVRGYPARKHVERALDDASMLVLPSKFGDFLKQIFYEKLSCCSDNGYYKDFKVLIRNNDKYTTLIGLDWDHIIQSNYFQPGVIRFKQSLAAPYCNHWAAVIPHTSSQKSTYENWR