Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70448.t1 | XP_013461190.1 | 98.8 | 587 | 7 | 0 | 1 | 587 | 1 | 587 | 0.00E+00 | 1167.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70448.t1 | Q9SJ85 | 72.5 | 561 | 141 | 3 | 9 | 564 | 19 | 571 | 2.5e-237 | 822.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70448.t1 | A0A072UZJ2 | 98.8 | 587 | 7 | 0 | 1 | 587 | 1 | 587 | 0.0e+00 | 1167.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene70448.t1 | TR | TRAF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70448.t1 | MTR_3g082870 | 98.807 | 587 | 7 | 0 | 1 | 587 | 1 | 587 | 0.0 | 1198 |
| MS.gene70448.t1 | MTR_3g082870 | 97.956 | 587 | 6 | 1 | 1 | 587 | 1 | 581 | 0.0 | 1183 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70448.t1 | AT2G04740 | 72.744 | 554 | 138 | 3 | 16 | 564 | 26 | 571 | 0.0 | 834 |
| MS.gene70448.t1 | AT2G04740 | 71.144 | 402 | 103 | 3 | 16 | 412 | 26 | 419 | 0.0 | 587 |
| MS.gene70448.t1 | AT2G04740 | 71.392 | 388 | 98 | 3 | 16 | 398 | 26 | 405 | 0.0 | 568 |
| MS.gene70448.t1 | AT2G04740 | 71.392 | 388 | 98 | 3 | 16 | 398 | 26 | 405 | 0.0 | 568 |
Find 129 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTCCTTGATCATTATTT+AGG | 0.129432 | 3.1:+66440145 | None:intergenic |
| ATAATTCATCTTTCCCTTCA+TGG | 0.209480 | 3.1:+66441913 | None:intergenic |
| TTGATGATTTACGTGATAAA+TGG | 0.228719 | 3.1:-66440119 | MS.gene70448:CDS |
| TCGATGCTAGAATAACTTTA+TGG | 0.240325 | 3.1:+66441979 | None:intergenic |
| CCAATCACCGCTGTAATTTC+AGG | 0.266996 | 3.1:-66439940 | MS.gene70448:CDS |
| GACTTAGACCCTTCCGATTT+CGG | 0.267048 | 3.1:-66444892 | MS.gene70448:CDS |
| GGCAAATAATTCAAAATTAC+AGG | 0.300060 | 3.1:+66440263 | None:intergenic |
| TCCGGTGGATTTCAGTTTCC+TGG | 0.303043 | 3.1:-66444508 | MS.gene70448:intron |
| CTTCAGGTGATGCCATTTCT+AGG | 0.304251 | 3.1:+66441074 | None:intergenic |
| TATGAGAATGGTCAAGATAA+TGG | 0.315888 | 3.1:-66442104 | MS.gene70448:CDS |
| TTGCCGATACAAAAGAATTC+CGG | 0.318461 | 3.1:-66440245 | MS.gene70448:CDS |
| ACAACTGTCCCGAGCATGCC+TGG | 0.328006 | 3.1:-66440174 | MS.gene70448:CDS |
| AACCAATGGCAAAGCTCTTC+AGG | 0.332097 | 3.1:+66441058 | None:intergenic |
| GGCGAACAAACTGTAATTTC+AGG | 0.337080 | 3.1:-66439919 | MS.gene70448:CDS |
| TGCTCCGAACACACGTTTGA+CGG | 0.338738 | 3.1:-66444667 | MS.gene70448:CDS |
| CTTGGAAAACGTCGCCGTTT+GGG | 0.353575 | 3.1:+66444845 | None:intergenic |
| TTACTCTGCTCTTAATTTGA+AGG | 0.354172 | 3.1:-66444632 | MS.gene70448:CDS |
| CTGAATAAAAGAAATGTATA+AGG | 0.355396 | 3.1:+66442375 | None:intergenic |
| TATGACCCTGTGAGCTTCAA+TGG | 0.355838 | 3.1:+66442505 | None:intergenic |
| ACATCAGCAAGATCATTTAG+AGG | 0.359931 | 3.1:+66442035 | None:intergenic |
| ATTTCCTTGATCATTATTTA+GGG | 0.362505 | 3.1:+66440146 | None:intergenic |
| GCAGGAAGCCTGTCTTCTTC+AGG | 0.365112 | 3.1:+66442170 | None:intergenic |
| TGTCCCGCCAATTCGCATTC+CGG | 0.366372 | 3.1:-66444526 | MS.gene70448:CDS |
| CTGCTCTTAATTTGAAGGTT+AGG | 0.367208 | 3.1:-66444627 | MS.gene70448:CDS |
| TGCCGATACAAAAGAATTCC+GGG | 0.375788 | 3.1:-66440244 | MS.gene70448:CDS |
| CCTGAAATTACAGCGGTGAT+TGG | 0.383019 | 3.1:+66439940 | None:intergenic |
| GCTTGGAAAACGTCGCCGTT+TGG | 0.392528 | 3.1:+66444844 | None:intergenic |
| AGATAATGGAATTGATGAAT+TGG | 0.393017 | 3.1:-66442090 | MS.gene70448:CDS |
| CAGGTACACCGATCGTTTGC+AGG | 0.393496 | 3.1:-66441274 | MS.gene70448:CDS |
| AGAGATTGCTGTGGATGATA+TGG | 0.401698 | 3.1:-66442345 | MS.gene70448:CDS |
| TCAAATTCCACTTATGAGAA+TGG | 0.404180 | 3.1:-66442116 | MS.gene70448:CDS |
| ACGGTCGAGGTCGCCGGCGC+GGG | 0.409392 | 3.1:+66444819 | None:intergenic |
| ATCTTGACCATTCTCATAAG+TGG | 0.413032 | 3.1:+66442109 | None:intergenic |
| GGTCGCCGGCGCGGGAGGCT+TGG | 0.425592 | 3.1:+66444827 | None:intergenic |
| CAAGCGCCTAGAGATGCTTA+TGG | 0.430680 | 3.1:-66440040 | MS.gene70448:CDS |
| TTGACTTTACCGCCACCATC+TGG | 0.432801 | 3.1:-66440213 | MS.gene70448:CDS |
| TCAGCCACCGCACGCTTAAG+AGG | 0.432979 | 3.1:+66441112 | None:intergenic |
| GCAGGAAATAAATCCAGATC+AGG | 0.444091 | 3.1:-66441256 | MS.gene70448:intron |
| GGGGACTGATGTGCCGAAAT+CGG | 0.446957 | 3.1:+66444879 | None:intergenic |
| CTCTACTACGCTTGTCTCGC+CGG | 0.450922 | 3.1:-66444733 | MS.gene70448:CDS |
| AAATCCACCGGAATGCGAAT+TGG | 0.454070 | 3.1:+66444519 | None:intergenic |
| CGTCAACGCACGTGACCAAT+GGG | 0.454729 | 3.1:-66444767 | MS.gene70448:CDS |
| ACGTCAACGCACGTGACCAA+TGG | 0.460070 | 3.1:-66444768 | MS.gene70448:CDS |
| CTCATAAGTGGAATTTGAAA+GGG | 0.462115 | 3.1:+66442121 | None:intergenic |
| AGGGAAGACCCAGGCATGCT+CGG | 0.478303 | 3.1:+66440165 | None:intergenic |
| CTTGGTGCCACACCTAGAAA+TGG | 0.481090 | 3.1:-66441086 | MS.gene70448:CDS |
| GTCACCGTCAAACGTGTGTT+CGG | 0.482387 | 3.1:+66444663 | None:intergenic |
| ACGGAGACGGTCGAGGTCGC+CGG | 0.484646 | 3.1:+66444813 | None:intergenic |
| CGTTAACGCCGCATTCAAGA+AGG | 0.487687 | 3.1:+66444788 | None:intergenic |
| AGCAAGACTCTCACGTATGA+AGG | 0.487920 | 3.1:-66441940 | MS.gene70448:CDS |
| TCTCATAAGTGGAATTTGAA+AGG | 0.493040 | 3.1:+66442120 | None:intergenic |
| GAATTGATGAATTGGTATCT+AGG | 0.495038 | 3.1:-66442082 | MS.gene70448:CDS |
| AACACACGTTTGACGGTGAC+CGG | 0.496734 | 3.1:-66444660 | MS.gene70448:CDS |
| GCAGAGCATGAAAAGTCATC+AGG | 0.503518 | 3.1:-66440012 | MS.gene70448:CDS |
| GCGTGCGGTGGCTGATGTCT+TGG | 0.504420 | 3.1:-66441104 | MS.gene70448:CDS |
| AGGATTCTACGCAAGGCTGC+AGG | 0.504870 | 3.1:+66442152 | None:intergenic |
| TCTTCCCTAAATAATGATCA+AGG | 0.508410 | 3.1:-66440150 | MS.gene70448:CDS |
| GCTCGTATGCTTCTCGAAAA+CGG | 0.515902 | 3.1:-66444697 | MS.gene70448:CDS |
| CCCGCCAATTCGCATTCCGG+TGG | 0.516474 | 3.1:-66444523 | MS.gene70448:CDS |
| GGGAAGACCCAGGCATGCTC+GGG | 0.516596 | 3.1:+66440166 | None:intergenic |
| CAACTGTCCCGAGCATGCCT+GGG | 0.516727 | 3.1:-66440173 | MS.gene70448:CDS |
| CGTATGAAGGATTTCCATGA+AGG | 0.522102 | 3.1:-66441927 | MS.gene70448:CDS |
| ATGACCCTGTGAGCTTCAAT+GGG | 0.523451 | 3.1:+66442506 | None:intergenic |
| TAATTCAAAATTACAGGCAA+TGG | 0.524676 | 3.1:+66440269 | None:intergenic |
| TGATGAATTGGTATCTAGGA+TGG | 0.526622 | 3.1:-66442078 | MS.gene70448:CDS |
| GTCGAGGTCGCCGGCGCGGG+AGG | 0.526895 | 3.1:+66444822 | None:intergenic |
| CTAGAATAACTTTATGGCAG+CGG | 0.541146 | 3.1:+66441985 | None:intergenic |
| CAACAACCATAAGCATCTCT+AGG | 0.542190 | 3.1:+66440034 | None:intergenic |
| GGTGATGCCATTTCTAGGTG+TGG | 0.543342 | 3.1:+66441079 | None:intergenic |
| ATTTATTTCCTGCAAACGAT+CGG | 0.548048 | 3.1:+66441266 | None:intergenic |
| TCCACCGGAATGCGAATTGG+CGG | 0.548080 | 3.1:+66444522 | None:intergenic |
| CACCTGAAGAGCTTTGCCAT+TGG | 0.550101 | 3.1:-66441060 | MS.gene70448:CDS |
| CCACCGGAATGCGAATTGGC+GGG | 0.551808 | 3.1:+66444523 | None:intergenic |
| GAAGGTAACGGAGACGGTCG+AGG | 0.554738 | 3.1:+66444806 | None:intergenic |
| TGTATAAGGCTACAAAGTGC+AGG | 0.556046 | 3.1:+66442389 | None:intergenic |
| GAAGACCCATTGAAGCTCAC+AGG | 0.556477 | 3.1:-66442511 | MS.gene70448:CDS |
| ATAGGTATTTCATCCACTCA+AGG | 0.558796 | 3.1:-66442581 | MS.gene70448:intron |
| AGAGAGCGGTGGAGTCCCAT+TGG | 0.560808 | 3.1:+66444752 | None:intergenic |
| TATCCCTTCCTGAAGAAGAC+AGG | 0.561398 | 3.1:-66442178 | MS.gene70448:CDS |
| ACTGATGTGCCGAAATCGGA+AGG | 0.562037 | 3.1:+66444883 | None:intergenic |
| ACGAGCGGCATCGAGGTGAC+CGG | 0.567999 | 3.1:+66444714 | None:intergenic |
| CGGTGAAGTAAGATTTGCAC+GGG | 0.578959 | 3.1:-66442426 | MS.gene70448:CDS |
| GACGGTCGAGGTCGCCGGCG+CGG | 0.580861 | 3.1:+66444818 | None:intergenic |
| GTAAAGTCAACAGCATTGCC+CGG | 0.581664 | 3.1:+66440226 | None:intergenic |
| TAGGATGGATGCCATGCAGA+TGG | 0.591367 | 3.1:-66442063 | MS.gene70448:CDS |
| TAGGTATTTCATCCACTCAA+GGG | 0.593239 | 3.1:-66442580 | MS.gene70448:CDS |
| AATTTGAAAGGGCAGTCAGA+AGG | 0.595225 | 3.1:+66442132 | None:intergenic |
| ACCAGGAAACTGAAATCCAC+CGG | 0.595513 | 3.1:+66444507 | None:intergenic |
| GAACTCTGCAACGGATTCAA+CGG | 0.598063 | 3.1:+66444571 | None:intergenic |
| AAGCCTGTCTTCTTCAGGAA+GGG | 0.600256 | 3.1:+66442175 | None:intergenic |
| AGTCAGAAGGATTCTACGCA+AGG | 0.604259 | 3.1:+66442145 | None:intergenic |
| ACAGGGTCATATTAAGTGCA+AGG | 0.612478 | 3.1:-66442493 | MS.gene70448:CDS |
| AAGACCCATTGAAGCTCACA+GGG | 0.615492 | 3.1:-66442510 | MS.gene70448:CDS |
| GAAGCCTGTCTTCTTCAGGA+AGG | 0.615749 | 3.1:+66442174 | None:intergenic |
| ATATAGACAATTCTCAAAAG+CGG | 0.616785 | 3.1:-66442217 | MS.gene70448:CDS |
| CTCCGTTACCTTCTTGAATG+CGG | 0.621540 | 3.1:-66444796 | MS.gene70448:CDS |
| CGAAGAGATGAGTCTCCAGA+TGG | 0.622590 | 3.1:+66440198 | None:intergenic |
| TAGAGGTTTAGCCATCTGCA+TGG | 0.622841 | 3.1:+66442052 | None:intergenic |
| ATCTCTCTCGTCAAGCTCAG+CGG | 0.623099 | 3.1:+66440083 | None:intergenic |
| CGTGTTCTTCAAGACAAGGA+AGG | 0.623560 | 3.1:+66441880 | None:intergenic |
| ATTCAAGAAGGTAACGGAGA+CGG | 0.624043 | 3.1:+66444800 | None:intergenic |
| GATGTTTCCTCTTAAGCGTG+CGG | 0.625855 | 3.1:-66441119 | MS.gene70448:CDS |
| GTTTCCTCTTAAGCGTGCGG+TGG | 0.625968 | 3.1:-66441116 | MS.gene70448:CDS |
| TGCAACGGATTCAACGGAGG+AGG | 0.630521 | 3.1:+66444577 | None:intergenic |
| AGAGATGAGTCTCCAGATGG+TGG | 0.634349 | 3.1:+66440201 | None:intergenic |
| ACAAGCGTAGTAGAGAGCGG+TGG | 0.635729 | 3.1:+66444741 | None:intergenic |
| GTATGAAGGATTTCCATGAA+GGG | 0.635765 | 3.1:-66441926 | MS.gene70448:CDS |
| TGAAGAACACGACATGAGTG+TGG | 0.636750 | 3.1:-66441868 | MS.gene70448:CDS |
| GATGAGTCTCCAGATGGTGG+CGG | 0.638331 | 3.1:+66440204 | None:intergenic |
| GTGATTGGAGAGAAAGTCAA+GGG | 0.639852 | 3.1:+66439955 | None:intergenic |
| TCATTATTTAGGGAAGACCC+AGG | 0.639945 | 3.1:+66440156 | None:intergenic |
| CGCCGCATTCAAGAAGGTAA+CGG | 0.641866 | 3.1:+66444794 | None:intergenic |
| GTTGGAACTGAACCCTTGAG+TGG | 0.645789 | 3.1:+66442568 | None:intergenic |
| GAGACTGATTGGAAAGAGCG+CGG | 0.646559 | 3.1:-66442446 | MS.gene70448:CDS |
| AGACAGATTAGAGATTGCTG+TGG | 0.649010 | 3.1:-66442354 | MS.gene70448:CDS |
| GGTGATTGGAGAGAAAGTCA+AGG | 0.656518 | 3.1:+66439954 | None:intergenic |
| ATGTCGTGTTCTTCAAGACA+AGG | 0.664235 | 3.1:+66441876 | None:intergenic |
| CTGATGTGCCGAAATCGGAA+GGG | 0.674283 | 3.1:+66444884 | None:intergenic |
| TCACGAAGAGAACTCTGCAA+CGG | 0.676952 | 3.1:+66444562 | None:intergenic |
| CTCTGCAACGGATTCAACGG+AGG | 0.681736 | 3.1:+66444574 | None:intergenic |
| TGTCTGCTAGCATTAACCAA+TGG | 0.682080 | 3.1:+66441044 | None:intergenic |
| ATGAGTTTCATCGACGACGG+CGG | 0.684567 | 3.1:-66444919 | MS.gene70448:CDS |
| AGGATGAGTTTCATCGACGA+CGG | 0.689914 | 3.1:-66444922 | MS.gene70448:CDS |
| GCGGTGAAGTAAGATTTGCA+CGG | 0.696641 | 3.1:-66442427 | MS.gene70448:CDS |
| GAGACAAGCGTAGTAGAGAG+CGG | 0.707889 | 3.1:+66444738 | None:intergenic |
| TTGTTCGCCTGAAATTACAG+CGG | 0.710853 | 3.1:+66439933 | None:intergenic |
| TAAGAGCAGAGTAATGACAC+CGG | 0.716123 | 3.1:+66444641 | None:intergenic |
| GAAGCATACGAGCGGCATCG+AGG | 0.723315 | 3.1:+66444707 | None:intergenic |
| ATAAAGTTATTCTAGCATCG+AGG | 0.746606 | 3.1:-66441977 | MS.gene70448:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAA+AGG | - | chr3.1:66444109-66444128 | MS.gene70448:intron | 0.0% |
| !! | AAAAAAAAAAAAAAAAAAGG+AGG | - | chr3.1:66444112-66444131 | MS.gene70448:intron | 10.0% |
| !! | AAATTATTTAACTATAAATC+AGG | + | chr3.1:66443147-66443166 | None:intergenic | 10.0% |
| !! | ATAAATACAACATTATTATT+TGG | + | chr3.1:66442184-66442203 | None:intergenic | 10.0% |
| !! | ATTATTAAAAGATATTTGAT+AGG | - | chr3.1:66441222-66441241 | MS.gene70448:intron | 10.0% |
| !! | GTATTATTATTCTATAAATT+TGG | - | chr3.1:66443116-66443135 | MS.gene70448:intron | 10.0% |
| !!! | AATTTTGAAATTGAAAATAT+CGG | - | chr3.1:66443026-66443045 | MS.gene70448:intron | 10.0% |
| !!! | TTTATTTTATTATAGTATTC+AGG | + | chr3.1:66441415-66441434 | None:intergenic | 10.0% |
| !!! | TTTCAAAATATTTTTTAAAC+AGG | - | chr3.1:66443643-66443662 | MS.gene70448:intron | 10.0% |
| !!! | TTTTTTTTTTTTGTTGATTT+AGG | - | chr3.1:66440413-66440432 | MS.gene70448:intron | 10.0% |
| !! | AAAAGTTCAATACTATAATA+AGG | + | chr3.1:66441924-66441943 | None:intergenic | 15.0% |
| !! | AAAGTTCAATACTATAATAA+GGG | + | chr3.1:66441923-66441942 | None:intergenic | 15.0% |
| !! | AATAATGTTGTATTTATACA+TGG | - | chr3.1:66442187-66442206 | MS.gene70448:CDS | 15.0% |
| !! | ATATTATTCATAGATGATTA+TGG | - | chr3.1:66440572-66440591 | MS.gene70448:intron | 15.0% |
| !! | TCTCAATGATAAATTAAATA+GGG | - | chr3.1:66440677-66440696 | MS.gene70448:intron | 15.0% |
| !! | TTCTCAATGATAAATTAAAT+AGG | - | chr3.1:66440676-66440695 | MS.gene70448:intron | 15.0% |
| !!! | AAATATTTCAATTTTGGTTT+AGG | + | chr3.1:66444050-66444069 | None:intergenic | 15.0% |
| !!! | ACTTTTAAAAGAAATCTTAA+TGG | + | chr3.1:66443600-66443619 | None:intergenic | 15.0% |
| !!! | ATTAAGATTTCTTTTAAAAG+TGG | - | chr3.1:66443599-66443618 | MS.gene70448:intron | 15.0% |
| !!! | ATTGGTAAATATTTCAATTT+TGG | + | chr3.1:66444056-66444075 | None:intergenic | 15.0% |
| !! | ACTTAAAATCTTTAGCAAAT+TGG | + | chr3.1:66443274-66443293 | None:intergenic | 20.0% |
| !! | AGAGAATTTAGATATATTGT+CGG | + | chr3.1:66441803-66441822 | None:intergenic | 20.0% |
| !! | ATAGAATAATAATACAGTCA+CGG | + | chr3.1:66443111-66443130 | None:intergenic | 20.0% |
| !! | ATTTCCTTGATCATTATTTA+GGG | + | chr3.1:66444676-66444695 | None:intergenic | 20.0% |
| !! | CTGAATAAAAGAAATGTATA+AGG | + | chr3.1:66442447-66442466 | None:intergenic | 20.0% |
| !! | GACAAATAATTGTTTGTAAA+GGG | - | chr3.1:66440765-66440784 | MS.gene70448:intron | 20.0% |
| !! | TAAAATAAGTGGAAATGAAA+AGG | + | chr3.1:66443910-66443929 | None:intergenic | 20.0% |
| !! | TTAAACTATGAAAAACTAGT+AGG | + | chr3.1:66441254-66441273 | None:intergenic | 20.0% |
| !! | TTATTCAATCTTTAGCAAAT+TGG | + | chr3.1:66443312-66443331 | None:intergenic | 20.0% |
| !! | TTTGAAAATCAGACAATAAA+AGG | + | chr3.1:66443630-66443649 | None:intergenic | 20.0% |
| !!! | TACTTATTAAAGGTTTTATC+TGG | - | chr3.1:66443986-66444005 | MS.gene70448:intron | 20.0% |
| !!! | TATTATAGTATTCAGGTTTT+TGG | + | chr3.1:66441408-66441427 | None:intergenic | 20.0% |
| !!! | TCAAACTTTTTCTTGAAAAA+TGG | + | chr3.1:66442355-66442374 | None:intergenic | 20.0% |
| !!! | TTGTTTTATTTCTCCTAAAA+GGG | - | chr3.1:66441517-66441536 | MS.gene70448:intron | 20.0% |
| !!! | TTTGTTTTATTTCTCCTAAA+AGG | - | chr3.1:66441516-66441535 | MS.gene70448:intron | 20.0% |
| ! | AAAGGAAATCATTAATGCAT+GGG | - | chr3.1:66440714-66440733 | MS.gene70448:intron | 25.0% |
| ! | AACAAACATGCATAAAACTA+AGG | + | chr3.1:66443356-66443375 | None:intergenic | 25.0% |
| ! | AACCATCAAATGATAAAACA+AGG | - | chr3.1:66442042-66442061 | MS.gene70448:CDS | 25.0% |
| ! | AACCTTTAATAAGTAACTAC+TGG | + | chr3.1:66443981-66444000 | None:intergenic | 25.0% |
| ! | ACCTTTAATAAGTAACTACT+GGG | + | chr3.1:66443980-66443999 | None:intergenic | 25.0% |
| ! | AGATTAAACAAGATATGATC+TGG | + | chr3.1:66444461-66444480 | None:intergenic | 25.0% |
| ! | ATATAGACAATTCTCAAAAG+CGG | - | chr3.1:66442602-66442621 | MS.gene70448:intron | 25.0% |
| ! | CAATGATAAATTAAATAGGG+AGG | - | chr3.1:66440680-66440699 | MS.gene70448:intron | 25.0% |
| ! | CAGATTGAAAAACAAAAACT+AGG | + | chr3.1:66443224-66443243 | None:intergenic | 25.0% |
| ! | CATAAACCAATTAATCCAAA+AGG | + | chr3.1:66440353-66440372 | None:intergenic | 25.0% |
| ! | CCTTAATATACTTCTAACAA+TGG | + | chr3.1:66444420-66444439 | None:intergenic | 25.0% |
| ! | GAGAATTTAGATATATTGTC+GGG | + | chr3.1:66441802-66441821 | None:intergenic | 25.0% |
| ! | GATTTCCTTGATCATTATTT+AGG | + | chr3.1:66444677-66444696 | None:intergenic | 25.0% |
| ! | GGACAAATAATTGTTTGTAA+AGG | - | chr3.1:66440764-66440783 | MS.gene70448:intron | 25.0% |
| ! | GGCAAATAATTCAAAATTAC+AGG | + | chr3.1:66444559-66444578 | None:intergenic | 25.0% |
| ! | TAATTCAAAATTACAGGCAA+TGG | + | chr3.1:66444553-66444572 | None:intergenic | 25.0% |
| ! | TAGAATAATAATACAGTCAC+GGG | + | chr3.1:66443110-66443129 | None:intergenic | 25.0% |
| ! | TCTAATATTCTTACACAACA+AGG | - | chr3.1:66441999-66442018 | MS.gene70448:CDS | 25.0% |
| ! | TTATTCATAGATGATTATGG+AGG | - | chr3.1:66440575-66440594 | MS.gene70448:intron | 25.0% |
| ! | TTGAAATTGAAAATATCGGA+GGG | - | chr3.1:66443030-66443049 | MS.gene70448:intron | 25.0% |
| ! | TTTATCCTGTATTTCTTTGT+TGG | - | chr3.1:66443520-66443539 | MS.gene70448:intron | 25.0% |
| !! | AAGAATTTGATTCTACCTTT+TGG | - | chr3.1:66440335-66440354 | MS.gene70448:intron | 25.0% |
| !! | AATGCACATTTTCATAACTT+AGG | + | chr3.1:66440543-66440562 | None:intergenic | 25.0% |
| !! | ATTCTACCTTTTGGATTAAT+TGG | - | chr3.1:66440344-66440363 | MS.gene70448:intron | 25.0% |
| !! | ATTGGTTTATGAGAATGTTA+AGG | - | chr3.1:66440362-66440381 | MS.gene70448:intron | 25.0% |
| !! | CCATTGTTAGAAGTATATTA+AGG | - | chr3.1:66444417-66444436 | MS.gene70448:intron | 25.0% |
| !! | TAAATAGGGAGGATTTTATA+AGG | - | chr3.1:66440691-66440710 | MS.gene70448:intron | 25.0% |
| !! | TGTAAAGGGTCTTATATTTA+CGG | - | chr3.1:66440743-66440762 | MS.gene70448:intron | 25.0% |
| !! | TTACATAAGATGATTTGCAA+TGG | - | chr3.1:66443186-66443205 | MS.gene70448:intron | 25.0% |
| !! | TTAGAAGCTCACTTTAATTT+AGG | - | chr3.1:66440633-66440652 | MS.gene70448:intron | 25.0% |
| !! | TTGATGATTTACGTGATAAA+TGG | - | chr3.1:66444700-66444719 | MS.gene70448:CDS | 25.0% |
| !! | TTTGAAATTGAAAATATCGG+AGG | - | chr3.1:66443029-66443048 | MS.gene70448:intron | 25.0% |
| !!! | AATATTTTTTAAACAGGCTG+AGG | - | chr3.1:66443649-66443668 | MS.gene70448:intron | 25.0% |
| !!! | AGATAATGGAATTGATGAAT+TGG | - | chr3.1:66442729-66442748 | MS.gene70448:intron | 25.0% |
| !!! | CTAGTTTTTGTTTTTCAATC+TGG | - | chr3.1:66443222-66443241 | MS.gene70448:intron | 25.0% |
| !!! | TATTAAAGGTTTTATCTGGA+TGG | - | chr3.1:66443990-66444009 | MS.gene70448:intron | 25.0% |
| AAAAACCCACCAAAACAATA+TGG | - | chr3.1:66441333-66441352 | MS.gene70448:intron | 30.0% | |
| AGCATTAGATATCTGATATC+AGG | + | chr3.1:66441763-66441782 | None:intergenic | 30.0% | |
| ATAAAGTTATTCTAGCATCG+AGG | - | chr3.1:66442842-66442861 | MS.gene70448:intron | 30.0% | |
| ATAACAACACAAATATGACC+TGG | + | chr3.1:66443385-66443404 | None:intergenic | 30.0% | |
| ATAATTCATCTTTCCCTTCA+TGG | + | chr3.1:66442909-66442928 | None:intergenic | 30.0% | |
| ATGCATAAAACTAAGGCAAT+TGG | + | chr3.1:66443349-66443368 | None:intergenic | 30.0% | |
| ATTTATTTCCTGCAAACGAT+CGG | + | chr3.1:66443556-66443575 | None:intergenic | 30.0% | |
| ATTTCAAAATTCCACAGTGA+AGG | + | chr3.1:66443017-66443036 | None:intergenic | 30.0% | |
| CATAAAACAATGAATCGAGT+AGG | - | chr3.1:66441969-66441988 | MS.gene70448:CDS | 30.0% | |
| CCTTTAATAAGTAACTACTG+GGG | + | chr3.1:66443979-66443998 | None:intergenic | 30.0% | |
| CTCATAAGTGGAATTTGAAA+GGG | + | chr3.1:66442701-66442720 | None:intergenic | 30.0% | |
| CTCTAGTAAGTAGTAACATA+GGG | + | chr3.1:66443938-66443957 | None:intergenic | 30.0% | |
| CTTTCTTCATCTTACATTGA+TGG | - | chr3.1:66443824-66443843 | MS.gene70448:intron | 30.0% | |
| GAAAGGAAATCATTAATGCA+TGG | - | chr3.1:66440713-66440732 | MS.gene70448:intron | 30.0% | |
| GAATTGATGAATTGGTATCT+AGG | - | chr3.1:66442737-66442756 | MS.gene70448:intron | 30.0% | |
| GCATCTTAATTGTAGATCAT+TGG | + | chr3.1:66444074-66444093 | None:intergenic | 30.0% | |
| GTTGTATTTATACATGGTCT+GGG | - | chr3.1:66442193-66442212 | MS.gene70448:CDS | 30.0% | |
| TAAGATGAAGAAAGAGAGAT+TGG | + | chr3.1:66443818-66443837 | None:intergenic | 30.0% | |
| TAAGTTACCGTGGTAATTAT+TGG | + | chr3.1:66443066-66443085 | None:intergenic | 30.0% | |
| TAGTATGCCAATAATTACCA+CGG | - | chr3.1:66443056-66443075 | MS.gene70448:intron | 30.0% | |
| TATGAGAATGGTCAAGATAA+TGG | - | chr3.1:66442715-66442734 | MS.gene70448:intron | 30.0% | |
| TATTTGTTCATTTCCAGGTA+TGG | - | chr3.1:66444495-66444514 | MS.gene70448:intron | 30.0% | |
| TCAAATTCCACTTATGAGAA+TGG | - | chr3.1:66442703-66442722 | MS.gene70448:intron | 30.0% | |
| TCGATGCTAGAATAACTTTA+TGG | + | chr3.1:66442843-66442862 | None:intergenic | 30.0% | |
| TCTCATAAGTGGAATTTGAA+AGG | + | chr3.1:66442702-66442721 | None:intergenic | 30.0% | |
| TCTTCCCTAAATAATGATCA+AGG | - | chr3.1:66444669-66444688 | MS.gene70448:CDS | 30.0% | |
| TGAGAATTGAAATGACTGAT+TGG | - | chr3.1:66440874-66440893 | MS.gene70448:intron | 30.0% | |
| TGTTGTATTTATACATGGTC+TGG | - | chr3.1:66442192-66442211 | MS.gene70448:CDS | 30.0% | |
| TTCTTACACAACAAGGAATT+AGG | - | chr3.1:66442006-66442025 | MS.gene70448:CDS | 30.0% | |
| TTGACTATTTGTTCATTTCC+AGG | - | chr3.1:66444490-66444509 | MS.gene70448:intron | 30.0% | |
| TTTATGAGAATGTTAAGGTG+TGG | - | chr3.1:66440367-66440386 | MS.gene70448:intron | 30.0% | |
| ! | AATGAAAAGGTAAAGCACTA+CGG | + | chr3.1:66443897-66443916 | None:intergenic | 30.0% |
| ! | AGAAAAAGTTTGAGACTGAT+TGG | - | chr3.1:66442362-66442381 | MS.gene70448:CDS | 30.0% |
| ! | ATAGGGATGTCTAAAATAAG+TGG | + | chr3.1:66443921-66443940 | None:intergenic | 30.0% |
| ! | CATAAGTTTAGCTTCATAGT+TGG | - | chr3.1:66441060-66441079 | MS.gene70448:CDS | 30.0% |
| ! | TGTAAAGGGTCTTATGATTA+GGG | - | chr3.1:66440779-66440798 | MS.gene70448:intron | 30.0% |
| ! | TTACTCTGCTCTTAATTTGA+AGG | - | chr3.1:66440187-66440206 | MS.gene70448:CDS | 30.0% |
| ! | TTGTAAAGGGTCTTATGATT+AGG | - | chr3.1:66440778-66440797 | MS.gene70448:intron | 30.0% |
| ! | TTTATGACTGCACATGTTTT+AGG | - | chr3.1:66444180-66444199 | MS.gene70448:intron | 30.0% |
| !! | GTGGAAGCTTTTTCTAATTA+AGG | - | chr3.1:66440386-66440405 | MS.gene70448:intron | 30.0% |
| !!! | AGCCTTGTTTTATCATTTGA+TGG | + | chr3.1:66442047-66442066 | None:intergenic | 30.0% |
| !!! | CAAAAGCGGTTTATTTTACA+GGG | - | chr3.1:66442616-66442635 | MS.gene70448:intron | 30.0% |
| !!! | TCAAAAGCGGTTTATTTTAC+AGG | - | chr3.1:66442615-66442634 | MS.gene70448:intron | 30.0% |
| AAATGACCTTAGGGTTATGT+TGG | - | chr3.1:66444243-66444262 | MS.gene70448:intron | 35.0% | |
| AAGATGATCTTAAGTTACCG+TGG | + | chr3.1:66443076-66443095 | None:intergenic | 35.0% | |
| AATCTTCAAAACACCATACC+TGG | + | chr3.1:66444511-66444530 | None:intergenic | 35.0% | |
| ACAAAAACTGAAACTCTCGT+AGG | + | chr3.1:66440502-66440521 | None:intergenic | 35.0% | |
| ACATCAGCAAGATCATTTAG+AGG | + | chr3.1:66442787-66442806 | None:intergenic | 35.0% | |
| ATAGGTATTTCATCCACTCA+AGG | - | chr3.1:66442238-66442257 | MS.gene70448:CDS | 35.0% | |
| ATCTTGACCATTCTCATAAG+TGG | + | chr3.1:66442713-66442732 | None:intergenic | 35.0% | |
| ATGGTTGCTGAAATGTATTC+TGG | - | chr3.1:66444009-66444028 | MS.gene70448:intron | 35.0% | |
| CAACAGTCTGTGTAACATTT+AGG | + | chr3.1:66440912-66440931 | None:intergenic | 35.0% | |
| CACCAAAACAATATGGTAGA+CGG | - | chr3.1:66441340-66441359 | MS.gene70448:intron | 35.0% | |
| CCCCAGTAGTTACTTATTAA+AGG | - | chr3.1:66443976-66443995 | MS.gene70448:intron | 35.0% | |
| CCCTTAAAAAAAGTCCCAAA+CGG | - | chr3.1:66439960-66439979 | MS.gene70448:CDS | 35.0% | |
| CTAGAATAACTTTATGGCAG+CGG | + | chr3.1:66442837-66442856 | None:intergenic | 35.0% | |
| CTGAACCAACAAAGAAATAC+AGG | + | chr3.1:66443528-66443547 | None:intergenic | 35.0% | |
| GAACATCACAAGGGATAAAA+GGG | - | chr3.1:66441702-66441721 | MS.gene70448:intron | 35.0% | |
| GCTCTAGTAAGTAGTAACAT+AGG | + | chr3.1:66443939-66443958 | None:intergenic | 35.0% | |
| GGATGTATAAAAACCTGATC+TGG | + | chr3.1:66443579-66443598 | None:intergenic | 35.0% | |
| GGTAGAATCAAATTCTTACC+AGG | + | chr3.1:66440332-66440351 | None:intergenic | 35.0% | |
| GTACAGTAAAAACCACATCT+GGG | + | chr3.1:66442285-66442304 | None:intergenic | 35.0% | |
| GTATGAAGGATTTCCATGAA+GGG | - | chr3.1:66442893-66442912 | MS.gene70448:intron | 35.0% | |
| TACAGTAAAAACCACATCTG+GGG | + | chr3.1:66442284-66442303 | None:intergenic | 35.0% | |
| TAGGTATTTCATCCACTCAA+GGG | - | chr3.1:66442239-66442258 | MS.gene70448:CDS | 35.0% | |
| TCTCATAAACTTCAAGCAGA+AGG | + | chr3.1:66443442-66443461 | None:intergenic | 35.0% | |
| TCTCCTTAATTCATCTACCA+CGG | - | chr3.1:66444216-66444235 | MS.gene70448:intron | 35.0% | |
| TGATATCAGGTTCCTATTTG+AGG | + | chr3.1:66441750-66441769 | None:intergenic | 35.0% | |
| TGATGAATTGGTATCTAGGA+TGG | - | chr3.1:66442741-66442760 | MS.gene70448:intron | 35.0% | |
| TGGGAGTTTCATTCCTAATT+AGG | + | chr3.1:66441657-66441676 | None:intergenic | 35.0% | |
| TGTACAGTAAAAACCACATC+TGG | + | chr3.1:66442286-66442305 | None:intergenic | 35.0% | |
| TTGAAGGAGGATACAATGAA+GGG | - | chr3.1:66440819-66440838 | MS.gene70448:intron | 35.0% | |
| TTGACCAACATTAGTGATCT+AGG | + | chr3.1:66441571-66441590 | None:intergenic | 35.0% | |
| TTGCCGATACAAAAGAATTC+CGG | - | chr3.1:66444574-66444593 | MS.gene70448:CDS | 35.0% | |
| TTTAGCAAATTGGTTGCGTT+TGG | + | chr3.1:66443264-66443283 | None:intergenic | 35.0% | |
| ! | AGGGAGGATTTTATAAGGAA+AGG | - | chr3.1:66440696-66440715 | MS.gene70448:intron | 35.0% |
| ! | ATATCGTCTCACTAGGTTTT+GGG | - | chr3.1:66441488-66441507 | MS.gene70448:intron | 35.0% |
| ! | ATGCATGGGACATTTTGTAA+AGG | - | chr3.1:66440728-66440747 | MS.gene70448:intron | 35.0% |
| ! | ATGTTTTCAACGACAGAATG+CGG | - | chr3.1:66441294-66441313 | MS.gene70448:intron | 35.0% |
| ! | CTGCTCTTAATTTGAAGGTT+AGG | - | chr3.1:66440192-66440211 | MS.gene70448:CDS | 35.0% |
| ! | GATGTGGTTTTTACTGTACA+AGG | - | chr3.1:66442286-66442305 | MS.gene70448:CDS | 35.0% |
| ! | TGCATGGGACATTTTGTAAA+GGG | - | chr3.1:66440729-66440748 | MS.gene70448:intron | 35.0% |
| !! | CTGTATTTCTTTGTTGGTTC+AGG | - | chr3.1:66443526-66443545 | MS.gene70448:intron | 35.0% |
| !!! | CCGTTTGGGACTTTTTTTAA+GGG | + | chr3.1:66439963-66439982 | None:intergenic | 35.0% |
| !!! | CGTTTGGGACTTTTTTTAAG+GGG | + | chr3.1:66439962-66439981 | None:intergenic | 35.0% |
| !!! | GGTATGGTGTTTTGAAGATT+CGG | - | chr3.1:66444511-66444530 | MS.gene70448:CDS | 35.0% |
| !!! | GTATGGTGTTTTGAAGATTC+GGG | - | chr3.1:66444512-66444531 | MS.gene70448:CDS | 35.0% |
| !!! | GTCTACCATATTGTTTTGGT+GGG | + | chr3.1:66441341-66441360 | None:intergenic | 35.0% |
| !!! | TGCATGTTTGTTTTTGTACC+AGG | - | chr3.1:66443364-66443383 | MS.gene70448:intron | 35.0% |
| AAGGAAAGGATATGGGTATG+AGG | - | chr3.1:66441680-66441699 | MS.gene70448:intron | 40.0% | |
| AATATGGCTGGTGCCTAATT+AGG | - | chr3.1:66441641-66441660 | MS.gene70448:intron | 40.0% | |
| AATTAGGCACCAGCCATATT+TGG | + | chr3.1:66441641-66441660 | None:intergenic | 40.0% | |
| AATTTGAAAGGGCAGTCAGA+AGG | + | chr3.1:66442690-66442709 | None:intergenic | 40.0% | |
| ACAGGGTCATATTAAGTGCA+AGG | - | chr3.1:66442326-66442345 | MS.gene70448:CDS | 40.0% | |
| ACAGTAAAAACCACATCTGG+GGG | + | chr3.1:66442283-66442302 | None:intergenic | 40.0% | |
| AGACAGATTAGAGATTGCTG+TGG | - | chr3.1:66442465-66442484 | MS.gene70448:CDS | 40.0% | |
| AGAGATTGCTGTGGATGATA+TGG | - | chr3.1:66442474-66442493 | MS.gene70448:CDS | 40.0% | |
| AGGAATGAAACTCCCAGAAA+AGG | - | chr3.1:66441661-66441680 | MS.gene70448:intron | 40.0% | |
| ATGTCGTGTTCTTCAAGACA+AGG | + | chr3.1:66442946-66442965 | None:intergenic | 40.0% | |
| ATGTTACACAGACTGTTGCT+AGG | - | chr3.1:66440914-66440933 | MS.gene70448:intron | 40.0% | |
| CAACAACCATAAGCATCTCT+AGG | + | chr3.1:66444788-66444807 | None:intergenic | 40.0% | |
| CATATGTAATTCACCACGAC+AGG | + | chr3.1:66444335-66444354 | None:intergenic | 40.0% | |
| CCCAGAAAAGGAAAGGATAT+GGG | - | chr3.1:66441673-66441692 | MS.gene70448:intron | 40.0% | |
| CGTATGAAGGATTTCCATGA+AGG | - | chr3.1:66442892-66442911 | MS.gene70448:intron | 40.0% | |
| CTCTCCTAGATCACTAATGT+TGG | - | chr3.1:66441564-66441583 | MS.gene70448:intron | 40.0% | |
| GAGAGAGCTTATGAGAAAGT+TGG | - | chr3.1:66440606-66440625 | MS.gene70448:intron | 40.0% | |
| GCAGGAAATAAATCCAGATC+AGG | - | chr3.1:66443563-66443582 | MS.gene70448:intron | 40.0% | |
| GGAACATCACAAGGGATAAA+AGG | - | chr3.1:66441701-66441720 | MS.gene70448:intron | 40.0% | |
| GGCGAACAAACTGTAATTTC+AGG | - | chr3.1:66444900-66444919 | MS.gene70448:CDS | 40.0% | |
| GTACTGTTTGTGCAATGGTA+AGG | - | chr3.1:66441150-66441169 | MS.gene70448:CDS | 40.0% | |
| GTCTTATGATTAGGGATGGA+GGG | - | chr3.1:66440787-66440806 | MS.gene70448:intron | 40.0% | |
| GTGATTGGAGAGAAAGTCAA+GGG | + | chr3.1:66444867-66444886 | None:intergenic | 40.0% | |
| GTTGAAGGAGGATACAATGA+AGG | - | chr3.1:66440818-66440837 | MS.gene70448:intron | 40.0% | |
| GTTGTGTTAATGTGTCGTGT+CGG | + | chr3.1:66440972-66440991 | None:intergenic | 40.0% | |
| TAACAAATCGAAGTTGCACC+AGG | - | chr3.1:66441462-66441481 | MS.gene70448:intron | 40.0% | |
| TAAGAGCAGAGTAATGACAC+CGG | + | chr3.1:66440181-66440200 | None:intergenic | 40.0% | |
| TAAGTCTCTTTCCTTCACTG+TGG | - | chr3.1:66443003-66443022 | MS.gene70448:intron | 40.0% | |
| TATCAGGTTCCTATTTGAGG+TGG | + | chr3.1:66441747-66441766 | None:intergenic | 40.0% | |
| TCATTATTTAGGGAAGACCC+AGG | + | chr3.1:66444666-66444685 | None:intergenic | 40.0% | |
| TCCCAGAAAAGGAAAGGATA+TGG | - | chr3.1:66441672-66441691 | MS.gene70448:intron | 40.0% | |
| TGAAACTCCCAGAAAAGGAA+AGG | - | chr3.1:66441666-66441685 | MS.gene70448:intron | 40.0% | |
| TGCCGATACAAAAGAATTCC+GGG | - | chr3.1:66444575-66444594 | MS.gene70448:CDS | 40.0% | |
| TGTATAAGGCTACAAAGTGC+AGG | + | chr3.1:66442433-66442452 | None:intergenic | 40.0% | |
| TGTCTGCTAGCATTAACCAA+TGG | + | chr3.1:66443778-66443797 | None:intergenic | 40.0% | |
| TGTTACACAGACTGTTGCTA+GGG | - | chr3.1:66440915-66440934 | MS.gene70448:intron | 40.0% | |
| TTCAAAAACTACAGCAGCGT+CGG | - | chr3.1:66441037-66441056 | MS.gene70448:intron | 40.0% | |
| TTGCTTCATTGCTTAAGTGG+AGG | - | chr3.1:66441541-66441560 | MS.gene70448:intron | 40.0% | |
| TTGTTCGCCTGAAATTACAG+CGG | + | chr3.1:66444889-66444908 | None:intergenic | 40.0% | |
| ! | AAGGGATAAAAGGGTTTGCT+TGG | - | chr3.1:66441711-66441730 | MS.gene70448:intron | 40.0% |
| ! | AAGGGTCTTATGATTAGGGA+TGG | - | chr3.1:66440783-66440802 | MS.gene70448:intron | 40.0% |
| ! | ACCCATATCCTTTCCTTTTC+TGG | + | chr3.1:66441677-66441696 | None:intergenic | 40.0% |
| ! | AGGGATAAAAGGGTTTGCTT+GGG | - | chr3.1:66441712-66441731 | MS.gene70448:intron | 40.0% |
| ! | CATATCGTCTCACTAGGTTT+TGG | - | chr3.1:66441487-66441506 | MS.gene70448:intron | 40.0% |
| ! | CCCATATCCTTTCCTTTTCT+GGG | + | chr3.1:66441676-66441695 | None:intergenic | 40.0% |
| ! | GCAATGAAGCAAACCCTTTT+AGG | + | chr3.1:66441533-66441552 | None:intergenic | 40.0% |
| ! | GCAGTCTATGATGAAAGCAT+TGG | - | chr3.1:66441367-66441386 | MS.gene70448:intron | 40.0% |
| ! | GGTTTGCTTCATTGCTTAAG+TGG | - | chr3.1:66441538-66441557 | MS.gene70448:intron | 40.0% |
| ! | TGCCCGGAATTCTTTTGTAT+CGG | + | chr3.1:66444580-66444599 | None:intergenic | 40.0% |
| ! | TGCCGTCTACCATATTGTTT+TGG | + | chr3.1:66441345-66441364 | None:intergenic | 40.0% |
| !! | ATTCAAGAAGGTAACGGAGA+CGG | + | chr3.1:66440022-66440041 | None:intergenic | 40.0% |
| !! | CGCTGCTGTAGTTTTTGAAA+TGG | + | chr3.1:66441036-66441055 | None:intergenic | 40.0% |
| !!! | CGTCTACCATATTGTTTTGG+TGG | + | chr3.1:66441342-66441361 | None:intergenic | 40.0% |
| !!! | GCCGTTTGGGACTTTTTTTA+AGG | + | chr3.1:66439964-66439983 | None:intergenic | 40.0% |
| AAAACAAGACATGAGGGGTG+GGG | - | chr3.1:66441128-66441147 | MS.gene70448:CDS | 45.0% | |
| AAAGACATTGTCCTCCAAGC+AGG | + | chr3.1:66441101-66441120 | None:intergenic | 45.0% | |
| AAATCCACCGGAATGCGAAT+TGG | + | chr3.1:66440303-66440322 | None:intergenic | 45.0% | |
| AACCAATGGCAAAGCTCTTC+AGG | + | chr3.1:66443764-66443783 | None:intergenic | 45.0% | |
| AAGACATTGTCCTCCAAGCA+GGG | + | chr3.1:66441100-66441119 | None:intergenic | 45.0% | |
| AAGACCCATTGAAGCTCACA+GGG | - | chr3.1:66442309-66442328 | MS.gene70448:CDS | 45.0% | |
| AAGCCTGTCTTCTTCAGGAA+GGG | + | chr3.1:66442647-66442666 | None:intergenic | 45.0% | |
| AAGGGCTTAGTTGTTGTCAG+TGG | - | chr3.1:66440837-66440856 | MS.gene70448:intron | 45.0% | |
| ACACACACACACATGTGAGA+TGG | - | chr3.1:66442127-66442146 | MS.gene70448:CDS | 45.0% | |
| ACACACACACATGTGAGATG+GGG | - | chr3.1:66442129-66442148 | MS.gene70448:CDS | 45.0% | |
| ACCAGGAAACTGAAATCCAC+CGG | + | chr3.1:66440315-66440334 | None:intergenic | 45.0% | |
| AGCAAGACTCTCACGTATGA+AGG | - | chr3.1:66442879-66442898 | MS.gene70448:intron | 45.0% | |
| AGGGTGTAGAAAGTTGAAGG+AGG | - | chr3.1:66440806-66440825 | MS.gene70448:intron | 45.0% | |
| AGTCAGAAGGATTCTACGCA+AGG | + | chr3.1:66442677-66442696 | None:intergenic | 45.0% | |
| ATGACCCTGTGAGCTTCAAT+GGG | + | chr3.1:66442316-66442335 | None:intergenic | 45.0% | |
| CAAAACAAGACATGAGGGGT+GGG | - | chr3.1:66441127-66441146 | MS.gene70448:CDS | 45.0% | |
| CACACACACACATGTGAGAT+GGG | - | chr3.1:66442128-66442147 | MS.gene70448:CDS | 45.0% | |
| CACGGCTCAAAATGACCTTA+GGG | - | chr3.1:66444234-66444253 | MS.gene70448:intron | 45.0% | |
| CCAATCACCGCTGTAATTTC+AGG | - | chr3.1:66444879-66444898 | MS.gene70448:CDS | 45.0% | |
| CCTCTTCCAACATAACCCTA+AGG | + | chr3.1:66444252-66444271 | None:intergenic | 45.0% | |
| CCTGAAATTACAGCGGTGAT+TGG | + | chr3.1:66444882-66444901 | None:intergenic | 45.0% | |
| CCTGCAAAACAAGACATGAG+GGG | - | chr3.1:66441123-66441142 | MS.gene70448:CDS | 45.0% | |
| CCTTAGGGTTATGTTGGAAG+AGG | - | chr3.1:66444249-66444268 | MS.gene70448:intron | 45.0% | |
| CGGTGAAGTAAGATTTGCAC+GGG | - | chr3.1:66442393-66442412 | MS.gene70448:CDS | 45.0% | |
| CGTGTTCTTCAAGACAAGGA+AGG | + | chr3.1:66442942-66442961 | None:intergenic | 45.0% | |
| CTCCGTTACCTTCTTGAATG+CGG | - | chr3.1:66440023-66440042 | MS.gene70448:CDS | 45.0% | |
| GACTTAGACCCTTCCGATTT+CGG | - | chr3.1:66439927-66439946 | MS.gene70448:CDS | 45.0% | |
| GAGCCGTGGTAGATGAATTA+AGG | + | chr3.1:66444222-66444241 | None:intergenic | 45.0% | |
| GATGTTTCCTCTTAAGCGTG+CGG | - | chr3.1:66443700-66443719 | MS.gene70448:intron | 45.0% | |
| GCAGAGCATGAAAAGTCATC+AGG | - | chr3.1:66444807-66444826 | MS.gene70448:CDS | 45.0% | |
| GCCTGCAAAACAAGACATGA+GGG | - | chr3.1:66441122-66441141 | MS.gene70448:CDS | 45.0% | |
| GCGGTGAAGTAAGATTTGCA+CGG | - | chr3.1:66442392-66442411 | MS.gene70448:CDS | 45.0% | |
| GCTCGTATGCTTCTCGAAAA+CGG | - | chr3.1:66440122-66440141 | MS.gene70448:CDS | 45.0% | |
| GGCTACAATACTCAGCAGTT+AGG | + | chr3.1:66444314-66444333 | None:intergenic | 45.0% | |
| GGGTATGAGGAACATCACAA+GGG | - | chr3.1:66441693-66441712 | MS.gene70448:intron | 45.0% | |
| GGTGATTGGAGAGAAAGTCA+AGG | + | chr3.1:66444868-66444887 | None:intergenic | 45.0% | |
| GTAAAGTCAACAGCATTGCC+CGG | + | chr3.1:66444596-66444615 | None:intergenic | 45.0% | |
| TACTCAGCAGTTAGGCAGTT+AGG | + | chr3.1:66444306-66444325 | None:intergenic | 45.0% | |
| TAGAGGTTTAGCCATCTGCA+TGG | + | chr3.1:66442770-66442789 | None:intergenic | 45.0% | |
| TATCCCTTCCTGAAGAAGAC+AGG | - | chr3.1:66442641-66442660 | MS.gene70448:intron | 45.0% | |
| TATGACCCTGTGAGCTTCAA+TGG | + | chr3.1:66442317-66442336 | None:intergenic | 45.0% | |
| TCACGAAGAGAACTCTGCAA+CGG | + | chr3.1:66440260-66440279 | None:intergenic | 45.0% | |
| TGAAGAACACGACATGAGTG+TGG | - | chr3.1:66442951-66442970 | MS.gene70448:intron | 45.0% | |
| TGCCTGCAAAACAAGACATG+AGG | - | chr3.1:66441121-66441140 | MS.gene70448:CDS | 45.0% | |
| TGGGTATGAGGAACATCACA+AGG | - | chr3.1:66441692-66441711 | MS.gene70448:intron | 45.0% | |
| ! | CTTCAGGTGATGCCATTTCT+AGG | + | chr3.1:66443748-66443767 | None:intergenic | 45.0% |
| ! | GAACTCTGCAACGGATTCAA+CGG | + | chr3.1:66440251-66440270 | None:intergenic | 45.0% |
| ! | GGTCTTATGATTAGGGATGG+AGG | - | chr3.1:66440786-66440805 | MS.gene70448:intron | 45.0% |
| ! | TGGAGGGTGTAGAAAGTTGA+AGG | - | chr3.1:66440803-66440822 | MS.gene70448:intron | 45.0% |
| !! | AAGAGTGCTCCACCTCAAAT+AGG | - | chr3.1:66441735-66441754 | MS.gene70448:intron | 45.0% |
| !! | GTTTTCGAGAAGCATACGAG+CGG | + | chr3.1:66440123-66440142 | None:intergenic | 45.0% |
| !! | AATATTTATTATATTTGAAT+AGG | - | chr3.1:66442220-66442239 | MS.gene70448:CDS | 5.0% |
| AACACACGTTTGACGGTGAC+CGG | - | chr3.1:66440159-66440178 | MS.gene70448:CDS | 50.0% | |
| ACTGATGTGCCGAAATCGGA+AGG | + | chr3.1:66439939-66439958 | None:intergenic | 50.0% | |
| AGACATTGTCCTCCAAGCAG+GGG | + | chr3.1:66441099-66441118 | None:intergenic | 50.0% | |
| AGAGATGAGTCTCCAGATGG+TGG | + | chr3.1:66444621-66444640 | None:intergenic | 50.0% | |
| ATCTCTCTCGTCAAGCTCAG+CGG | + | chr3.1:66444739-66444758 | None:intergenic | 50.0% | |
| ATGAGTTTCATCGACGACGG+CGG | - | chr3.1:66439900-66439919 | MS.gene70448:CDS | 50.0% | |
| CAACTACTTTCCCCCAGATG+TGG | - | chr3.1:66442270-66442289 | MS.gene70448:CDS | 50.0% | |
| CAAGCGCCTAGAGATGCTTA+TGG | - | chr3.1:66444779-66444798 | MS.gene70448:CDS | 50.0% | |
| CACATCTGGGGGAAAGTAGT+TGG | + | chr3.1:66442272-66442291 | None:intergenic | 50.0% | |
| CACCTGAAGAGCTTTGCCAT+TGG | - | chr3.1:66443759-66443778 | MS.gene70448:intron | 50.0% | |
| CAGGCACATATCGTCTCACT+AGG | - | chr3.1:66441481-66441500 | MS.gene70448:intron | 50.0% | |
| CCACGGCTCAAAATGACCTT+AGG | - | chr3.1:66444233-66444252 | MS.gene70448:intron | 50.0% | |
| CGAAGAGATGAGTCTCCAGA+TGG | + | chr3.1:66444624-66444643 | None:intergenic | 50.0% | |
| CGCCGCATTCAAGAAGGTAA+CGG | + | chr3.1:66440028-66440047 | None:intergenic | 50.0% | |
| CGTTAACGCCGCATTCAAGA+AGG | + | chr3.1:66440034-66440053 | None:intergenic | 50.0% | |
| CTAGTGAGACGATATGTGCC+TGG | + | chr3.1:66441483-66441502 | None:intergenic | 50.0% | |
| CTGATGTGCCGAAATCGGAA+GGG | + | chr3.1:66439938-66439957 | None:intergenic | 50.0% | |
| CTTAATCTTCCCCTGCTTGG+AGG | - | chr3.1:66441087-66441106 | MS.gene70448:CDS | 50.0% | |
| CTTGGAAAACGTCGCCGTTT+GGG | + | chr3.1:66439977-66439996 | None:intergenic | 50.0% | |
| GAAGACCCATTGAAGCTCAC+AGG | - | chr3.1:66442308-66442327 | MS.gene70448:CDS | 50.0% | |
| GAAGCCTGTCTTCTTCAGGA+AGG | + | chr3.1:66442648-66442667 | None:intergenic | 50.0% | |
| GAGACAAGCGTAGTAGAGAG+CGG | + | chr3.1:66440084-66440103 | None:intergenic | 50.0% | |
| GAGACTGATTGGAAAGAGCG+CGG | - | chr3.1:66442373-66442392 | MS.gene70448:CDS | 50.0% | |
| GCAAAACAAGACATGAGGGG+TGG | - | chr3.1:66441126-66441145 | MS.gene70448:CDS | 50.0% | |
| GTCACCGTCAAACGTGTGTT+CGG | + | chr3.1:66440159-66440178 | None:intergenic | 50.0% | |
| GTGCTTAATCTTCCCCTGCT+TGG | - | chr3.1:66441084-66441103 | MS.gene70448:CDS | 50.0% | |
| GTTGGAACTGAACCCTTGAG+TGG | + | chr3.1:66442254-66442273 | None:intergenic | 50.0% | |
| TACCACGGTCGTGCCAAATA+TGG | - | chr3.1:66441625-66441644 | MS.gene70448:intron | 50.0% | |
| TAGGATGGATGCCATGCAGA+TGG | - | chr3.1:66442756-66442775 | MS.gene70448:intron | 50.0% | |
| TGCTCCGAACACACGTTTGA+CGG | - | chr3.1:66440152-66440171 | MS.gene70448:CDS | 50.0% | |
| TTGACTTTACCGCCACCATC+TGG | - | chr3.1:66444606-66444625 | MS.gene70448:CDS | 50.0% | |
| ! | CTGAGTATTGTAGCCTGTCG+TGG | - | chr3.1:66444319-66444338 | MS.gene70448:intron | 50.0% |
| ! | GGTGATGCCATTTCTAGGTG+TGG | + | chr3.1:66443743-66443762 | None:intergenic | 50.0% |
| ! | TCCGGTGGATTTCAGTTTCC+TGG | - | chr3.1:66440311-66440330 | MS.gene70448:intron | 50.0% |
| ! | TGTTAATGTGTCGTGTCGGC+TGG | + | chr3.1:66440968-66440987 | None:intergenic | 50.0% |
| !! | CCTAAGGTCATTTTGAGCCG+TGG | + | chr3.1:66444236-66444255 | None:intergenic | 50.0% |
| !! | CTTGGTGCCACACCTAGAAA+TGG | - | chr3.1:66443733-66443752 | MS.gene70448:intron | 50.0% |
| !! | GTGGGGTACTGTTTGTGCAA+TGG | - | chr3.1:66441145-66441164 | MS.gene70448:CDS | 50.0% |
| !!! | CCCCTCATGTCTTGTTTTGC+AGG | + | chr3.1:66441126-66441145 | None:intergenic | 50.0% |
| !!! | CGTCTCACTAGGTTTTGGGT+GGG | - | chr3.1:66441492-66441511 | MS.gene70448:intron | 50.0% |
| !!! | TCGTCTCACTAGGTTTTGGG+TGG | - | chr3.1:66441491-66441510 | MS.gene70448:intron | 50.0% |
| ACAAGCGTAGTAGAGAGCGG+TGG | + | chr3.1:66440081-66440100 | None:intergenic | 55.0% | |
| ACGGTCGTGCCAAATATGGC+TGG | - | chr3.1:66441629-66441648 | MS.gene70448:intron | 55.0% | |
| ACGTCAACGCACGTGACCAA+TGG | - | chr3.1:66440051-66440070 | MS.gene70448:CDS | 55.0% | |
| AGCCATATTTGGCACGACCG+TGG | + | chr3.1:66441630-66441649 | None:intergenic | 55.0% | |
| AGGATTCTACGCAAGGCTGC+AGG | + | chr3.1:66442670-66442689 | None:intergenic | 55.0% | |
| CAGGTACACCGATCGTTTGC+AGG | - | chr3.1:66443545-66443564 | MS.gene70448:intron | 55.0% | |
| CGTCAACGCACGTGACCAAT+GGG | - | chr3.1:66440052-66440071 | MS.gene70448:CDS | 55.0% | |
| CTCTACTACGCTTGTCTCGC+CGG | - | chr3.1:66440086-66440105 | MS.gene70448:CDS | 55.0% | |
| GCAGGAAGCCTGTCTTCTTC+AGG | + | chr3.1:66442652-66442671 | None:intergenic | 55.0% | |
| GCTTGGAAAACGTCGCCGTT+TGG | + | chr3.1:66439978-66439997 | None:intergenic | 55.0% | |
| GGGGACTGATGTGCCGAAAT+CGG | + | chr3.1:66439943-66439962 | None:intergenic | 55.0% | |
| GTGCCTGACGAGTCTTACCA+CGG | - | chr3.1:66441610-66441629 | MS.gene70448:intron | 55.0% | |
| GTTTCCTCTTAAGCGTGCGG+TGG | - | chr3.1:66443703-66443722 | MS.gene70448:intron | 55.0% | |
| TCCACCGGAATGCGAATTGG+CGG | + | chr3.1:66440300-66440319 | None:intergenic | 55.0% | |
| TGTCCCGCCAATTCGCATTC+CGG | - | chr3.1:66440293-66440312 | MS.gene70448:CDS | 55.0% | |
| ! | CTCTGCAACGGATTCAACGG+AGG | + | chr3.1:66440248-66440267 | None:intergenic | 55.0% |
| ! | GATGAGTCTCCAGATGGTGG+CGG | + | chr3.1:66444618-66444637 | None:intergenic | 55.0% |
| ! | TGCAACGGATTCAACGGAGG+AGG | + | chr3.1:66440245-66440264 | None:intergenic | 55.0% |
| ACAACTGTCCCGAGCATGCC+TGG | - | chr3.1:66444645-66444664 | MS.gene70448:CDS | 60.0% | |
| AGAGAGCGGTGGAGTCCCAT+TGG | + | chr3.1:66440070-66440089 | None:intergenic | 60.0% | |
| AGGGAAGACCCAGGCATGCT+CGG | + | chr3.1:66444657-66444676 | None:intergenic | 60.0% | |
| CAACTGTCCCGAGCATGCCT+GGG | - | chr3.1:66444646-66444665 | MS.gene70448:CDS | 60.0% | |
| CCACCGGAATGCGAATTGGC+GGG | + | chr3.1:66440299-66440318 | None:intergenic | 60.0% | |
| CGACCGTGGTAAGACTCGTC+AGG | + | chr3.1:66441616-66441635 | None:intergenic | 60.0% | |
| GAAGCATACGAGCGGCATCG+AGG | + | chr3.1:66440115-66440134 | None:intergenic | 60.0% | |
| TCAGCCACCGCACGCTTAAG+AGG | + | chr3.1:66443710-66443729 | None:intergenic | 60.0% | |
| !! | GAAGGTAACGGAGACGGTCG+AGG | + | chr3.1:66440016-66440035 | None:intergenic | 60.0% |
| CCCGCCAATTCGCATTCCGG+TGG | - | chr3.1:66440296-66440315 | MS.gene70448:CDS | 65.0% | |
| GCGTGCGGTGGCTGATGTCT+TGG | - | chr3.1:66443715-66443734 | MS.gene70448:intron | 65.0% | |
| GGGAAGACCCAGGCATGCTC+GGG | + | chr3.1:66444656-66444675 | None:intergenic | 65.0% | |
| ! | ACGAGCGGCATCGAGGTGAC+CGG | + | chr3.1:66440108-66440127 | None:intergenic | 65.0% |
| ! | GTTTTCCAAGCCTCCCGCGC+CGG | - | chr3.1:66439987-66440006 | MS.gene70448:CDS | 65.0% |
| ACGGAGACGGTCGAGGTCGC+CGG | + | chr3.1:66440009-66440028 | None:intergenic | 70.0% | |
| ! | ACGGTCGAGGTCGCCGGCGC+GGG | + | chr3.1:66440003-66440022 | None:intergenic | 80.0% |
| ! | GACGGTCGAGGTCGCCGGCG+CGG | + | chr3.1:66440004-66440023 | None:intergenic | 80.0% |
| ! | GGTCGCCGGCGCGGGAGGCT+TGG | + | chr3.1:66439995-66440014 | None:intergenic | 85.0% |
| ! | GTCGAGGTCGCCGGCGCGGG+AGG | + | chr3.1:66440000-66440019 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 66439900 | 66444941 | 66439900 | ID=MS.gene70448 |
| chr3.1 | mRNA | 66439900 | 66444941 | 66439900 | ID=MS.gene70448.t1;Parent=MS.gene70448 |
| chr3.1 | exon | 66444509 | 66444941 | 66444509 | ID=MS.gene70448.t1.exon1;Parent=MS.gene70448.t1 |
| chr3.1 | CDS | 66444509 | 66444941 | 66444509 | ID=cds.MS.gene70448.t1;Parent=MS.gene70448.t1 |
| chr3.1 | exon | 66441840 | 66442599 | 66441840 | ID=MS.gene70448.t1.exon2;Parent=MS.gene70448.t1 |
| chr3.1 | CDS | 66441840 | 66442599 | 66441840 | ID=cds.MS.gene70448.t1;Parent=MS.gene70448.t1 |
| chr3.1 | exon | 66441257 | 66441293 | 66441257 | ID=MS.gene70448.t1.exon3;Parent=MS.gene70448.t1 |
| chr3.1 | CDS | 66441257 | 66441293 | 66441257 | ID=cds.MS.gene70448.t1;Parent=MS.gene70448.t1 |
| chr3.1 | exon | 66441043 | 66441176 | 66441043 | ID=MS.gene70448.t1.exon4;Parent=MS.gene70448.t1 |
| chr3.1 | CDS | 66441043 | 66441176 | 66441043 | ID=cds.MS.gene70448.t1;Parent=MS.gene70448.t1 |
| chr3.1 | exon | 66439900 | 66440329 | 66439900 | ID=MS.gene70448.t1.exon5;Parent=MS.gene70448.t1 |
| chr3.1 | CDS | 66439900 | 66440329 | 66439900 | ID=cds.MS.gene70448.t1;Parent=MS.gene70448.t1 |
| Gene Sequence |
| Protein sequence |
