AlfalfaGEDB | MS.gene70510

M. sativa cultivar XinJiangDaYe / MS.gene70510

KEGG: K11314
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70510.t1	XP_013461146.1	78.9	76	5	1	16	80	114	189	1.70E-23	118.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70510.t1	Q75LL6	45.7	70	27	1	10	68	112	181	4.1e-10	65.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70510.t1	A0A072VAF9	78.9	76	5	1	16	80	114	189	1.2e-23	118.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene70510.t1	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70510.t1	MTR_3g081380	78.947	76	5	1	16	80	114	189	2.83e-36	120
MS.gene70510.t1	MTR_3g081360	64.789	71	14	1	16	75	101	171	1.52e-22	89.7
MS.gene70510.t1	MTR_3g081390	61.667	60	12	1	22	70	67	126	2.72e-17	70.9
MS.gene70510.t1	MTR_3g082790	56.250	64	17	1	22	74	125	188	1.27e-16	72.8
MS.gene70510.t1	MTR_3g082790	56.250	64	17	1	22	74	85	148	1.69e-16	72.4
MS.gene70510.t1	MTR_2g026380	42.857	70	29	1	10	68	109	178	9.73e-12	58.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70510.t1	AT3G07740	42.667	75	32	1	10	73	41	115	2.13e-12	60.8
MS.gene70510.t1	AT3G07740	42.667	75	32	1	10	73	112	186	2.22e-12	60.8
MS.gene70510.t1	AT3G07740	42.667	75	32	1	10	73	119	193	2.31e-12	60.8
MS.gene70510.t1	AT3G07740	42.667	75	32	1	10	73	91	165	2.63e-12	60.5
MS.gene70510.t1	AT4G16420	45.312	64	24	1	16	68	112	175	3.99e-12	60.1
MS.gene70510.t1	AT4G16420	45.312	64	24	1	16	68	112	175	4.07e-12	60.1
MS.gene70510.t1	AT4G16420	45.312	64	24	1	16	68	112	175	4.15e-12	60.1

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Find 20 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGCAACTCCGTGCCAT+GGG	0.560848	3.1:-67126834	MS.gene70510:CDS
AAGCGAGATCAACTCAAGAA+AGG	0.572505	3.1:-67126810	MS.gene70510:intron
AATGGTGTTGCTGAACATGT+TGG	0.605755	3.1:-67127040	MS.gene70510:CDS
ACATGTATGGATTTGAGAAT+TGG	0.349491	3.1:-67127063	MS.gene70510:CDS
ATGGTGTTGCTGAACATGTT+GGG	0.532190	3.1:-67127039	MS.gene70510:CDS
CAAAGAGCAACTCCGTGCCA+TGG	0.534697	3.1:-67126835	MS.gene70510:CDS
CTCAAATCCATACATGTCAA+GGG	0.602788	3.1:+67127069	None:intergenic
GAGTTGATCTCGCTTTCCCA+TGG	0.527997	3.1:+67126818	None:intergenic
GATCTCGCTTTCCCATGGCA+CGG	0.612939	3.1:+67126823	None:intergenic
GTAGGATTTGTCTTATTCCA+AGG	0.468148	3.1:-67126865	MS.gene70510:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTTTATCCCACGAAATA+GGG	-	chr3.1:67126973-67126992	MS.gene70510:intron	30.0%
AAGCCAATCAGATAAAATGA+AGG	+	chr3.1:67127317-67127336	None:intergenic	30.0%
ACATGTATGGATTTGAGAAT+TGG	-	chr3.1:67126654-67126673	MS.gene70510:intron	30.0%
ACGTTGTCAAATAGACTTAA+AGG	+	chr3.1:67126773-67126792	None:intergenic	30.0%
ATGATCTAAATCACAATGTG+TGG	-	chr3.1:67126941-67126960	MS.gene70510:intron	30.0%
ATGTGCACAATCAATTTAAC+TGG	-	chr3.1:67127166-67127185	MS.gene70510:intron	30.0%
ATTTAACTGGACCTGAAATT+AGG	-	chr3.1:67127179-67127198	MS.gene70510:intron	30.0%
GTGTAATTGTTTGTACTTGT+AGG	-	chr3.1:67126834-67126853	MS.gene70510:CDS	30.0%
TATGGATTTGAGAATTGGAA+TGG	-	chr3.1:67126659-67126678	MS.gene70510:intron	30.0%
TCAAATAGACTTAAAGGAAG+AGG	+	chr3.1:67126767-67126786	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	67126363	67127376	67126363	ID=MS.gene70510
chr3.1	mRNA	67126363	67127376	67126363	ID=MS.gene70510.t1;Parent=MS.gene70510
chr3.1	exon	67127320	67127376	67127320	ID=MS.gene70510.t1.exon1;Parent=MS.gene70510.t1
chr3.1	CDS	67127320	67127376	67127320	ID=cds.MS.gene70510.t1;Parent=MS.gene70510.t1
chr3.1	exon	67127000	67127092	67127000	ID=MS.gene70510.t1.exon2;Parent=MS.gene70510.t1
chr3.1	CDS	67127000	67127092	67127000	ID=cds.MS.gene70510.t1;Parent=MS.gene70510.t1
chr3.1	exon	67126811	67126883	67126811	ID=MS.gene70510.t1.exon3;Parent=MS.gene70510.t1
chr3.1	CDS	67126811	67126883	67126811	ID=cds.MS.gene70510.t1;Parent=MS.gene70510.t1
chr3.1	exon	67126363	67126382	67126363	ID=MS.gene70510.t1.exon4;Parent=MS.gene70510.t1
chr3.1	CDS	67126363	67126382	67126363	ID=cds.MS.gene70510.t1;Parent=MS.gene70510.t1

Gene Sequence

>MS.gene70510

ATGGCAACAAATGAAAATGCATTAACAAATAAGGATAGAGCAGAATTGATACATGAGGTATACTTACTTGTTACAAACACAAATAAATATATTTTTATAGGAAGATCTATCTTTCTGCTTACATGTCCATATTGGAGTGTGCATGAAGAGTTGTTACTTCCTGAGGTTTGTGGTTTGAGTATGGGGAACTCTTTTATCTTCTTTCTACTTACGTGCTATATGTTACATGTTTTTTGCACTTCTACCTTATTTCATATTATCATAACAAGCTTGTTTCGTTTTAGGCCCTTGACATGTATGGATTTGAGAATTGGAATGGTGTTGCTGAACATGTTGGGACGAAAAGCAAACCTGAGTGTATTGACCACTATAATGTGGTATATCTGAATTCGCCATGTGCTCCTCTTCCTTTAAGTCTATTTGACAACGTTGTTATTGATAGCATACATGCAACCTCTGTTTGAATGCTTGGTGTAATTGTTTGTACTTGTAGGATTTGTCTTATTCCAAGGGAAAGAACAAAGAGCAACTCCGTGCCATGGGAAAGCGAGATCAACTCAAGAAAGGTTTGCTTCTTTATGATCTAAATCACAATGTGTGGACACTTTGCAAACTTTATCCCACGAAATAGGGTTGGCTATATGGACCAAACGAAACCAAACTTTTTTTTTAGAGGTGGAGAATATGTATTTATTTGTAGAAATAGACAAATAGGTGAGAATACAGTCTAGTACATGATAATTAAAACAGATAATTCGACAACGAAAGCATTTGAAGGACAAAAATATCGTTTCAAATTGAACATGTGCACAATCAATTTAACTGGACCTGAAATTAGGTAAAGAATGAAAATTTCTTTGATAGGTTGCTGTCTTTGAATCTTGATCAATGTTGCTAATTCTTTATTAGCTTTGAGACAATGGTGGGATTTTATTTTTTTGTAATGGTCTGCCTTCATTTTATCTGATTGGCTTTATGACATTGATTAATGCAGGGGATAAAGCTTTGGAATGA

Protein sequence

>MS.gene70510.t1

MATNENALTNKDRAELIHEALDMYGFENWNGVAEHVGTKSKPECIDHYNVDLSYSKGKNKEQLRAMGKRDQLKKGDKALE