AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70532

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70532.t1 MTR_3g080940 98.551 207 3 0 1 207 1 207 7.75e-151 417
MS.gene70532.t1 MTR_8g043650 49.746 197 95 1 1 197 1 193 2.09e-66 204
MS.gene70532.t1 MTR_1g105920 58.788 165 61 2 1 165 1 158 3.38e-66 204
MS.gene70532.t1 MTR_1g106070 54.598 174 79 0 1 174 1 174 4.14e-66 201
MS.gene70532.t1 MTR_3g052920 58.750 160 66 0 1 160 1 160 8.94e-66 202
MS.gene70532.t1 MTR_1g105910 51.309 191 83 1 1 181 1 191 2.76e-65 201
MS.gene70532.t1 MTR_1g108510 53.552 183 83 1 1 181 1 183 2.48e-64 199
MS.gene70532.t1 MTR_2g030740 57.500 160 68 0 1 160 1 160 1.25e-63 197
MS.gene70532.t1 MTR_2g093190 54.098 183 82 1 1 181 1 183 1.56e-63 196
MS.gene70532.t1 MTR_3g030770 53.005 183 84 1 1 181 1 183 5.96e-63 195
MS.gene70532.t1 MTR_1g012570 47.716 197 99 1 1 197 1 193 1.00e-61 192
MS.gene70532.t1 MTR_5g045560 51.786 168 81 0 1 168 1 168 9.47e-60 187
MS.gene70532.t1 MTR_1g108580 49.727 183 90 1 1 181 1 183 6.09e-58 182
MS.gene70532.t1 MTR_1g077360 53.012 166 78 0 1 166 1 166 2.37e-57 181
MS.gene70532.t1 MTR_1g075600 49.215 191 87 2 1 181 1 191 4.31e-57 180
MS.gene70532.t1 MTR_2g085250 48.315 178 92 0 1 178 1 178 4.65e-56 178
MS.gene70532.t1 MTR_2g085280 48.315 178 92 0 1 178 1 178 4.70e-56 178
MS.gene70532.t1 MTR_3g052870 58.784 148 52 1 1 148 1 139 1.19e-55 176
MS.gene70532.t1 MTR_5g055100 47.208 197 100 2 1 197 1 193 3.01e-55 176
MS.gene70532.t1 MTR_1g105905 52.597 154 73 0 21 174 4 157 3.67e-55 175
MS.gene70532.t1 MTR_5g053390 45.026 191 95 1 1 181 1 191 2.91e-53 171
MS.gene70532.t1 MTR_0121s0080 42.487 193 105 1 9 201 9 195 7.58e-50 162
MS.gene70532.t1 MTR_0121s0100 57.031 128 55 0 1 128 1 128 1.21e-48 155
MS.gene70532.t1 MTR_3g030780 55.039 129 58 0 1 129 1 129 1.70e-44 145
MS.gene70532.t1 MTR_7g062350 42.458 179 95 2 24 201 36 207 1.33e-43 146
MS.gene70532.t1 MTR_2g105290 39.080 174 102 1 1 174 4 173 9.00e-39 132
MS.gene70532.t1 MTR_3g067910 55.769 104 46 0 21 124 2 105 2.91e-34 118
MS.gene70532.t1 MTR_8g086290 37.736 159 95 1 4 162 7 161 2.88e-33 117
MS.gene70532.t1 MTR_1g075570 47.154 123 51 1 21 143 4 112 6.09e-33 116
MS.gene70532.t1 MTR_7g028448 39.264 163 87 2 2 164 5 155 3.04e-31 112
MS.gene70532.t1 MTR_4g036915 39.264 163 87 2 2 164 5 155 3.04e-31 112
MS.gene70532.t1 MTR_4g127140 37.500 184 101 3 1 174 4 183 4.22e-31 112
MS.gene70532.t1 MTR_4g131030 39.674 184 81 6 8 171 1 174 1.22e-29 109
MS.gene70532.t1 MTR_4g094632 38.462 169 87 4 8 176 1 152 9.20e-29 105
MS.gene70532.t1 MTR_1g063160 39.412 170 84 5 8 171 1 157 9.72e-29 106
MS.gene70532.t1 MTR_1g054265 44.628 121 65 1 8 128 1 119 3.62e-28 104
MS.gene70532.t1 MTR_8g046350 43.284 134 68 3 8 138 1 129 1.79e-27 102
MS.gene70532.t1 MTR_1g047550 38.158 152 82 2 8 159 1 140 5.11e-27 101
MS.gene70532.t1 MTR_8g079502 43.697 119 65 1 8 126 1 117 7.90e-27 101
MS.gene70532.t1 MTR_8g051580 38.889 162 72 4 8 165 1 139 2.91e-26 100
MS.gene70532.t1 MTR_1g108500 52.577 97 25 1 22 118 110 185 8.19e-25 99.8
MS.gene70532.t1 MTR_4g094638 34.177 158 87 3 8 162 1 144 3.13e-22 89.4
MS.gene70532.t1 MTR_3g067875 67.925 53 17 0 21 73 4 56 4.13e-21 83.2
MS.gene70532.t1 MTR_4g102530 35.484 124 60 3 10 123 3 116 2.44e-17 77.0
MS.gene70532.t1 MTR_3g067870 55.738 61 27 0 18 78 85 145 2.74e-17 75.9
MS.gene70532.t1 MTR_4g093970 47.059 85 40 2 8 92 27 106 7.23e-17 76.6
MS.gene70532.t1 MTR_3g067915 49.254 67 34 0 60 126 30 96 9.72e-17 72.8
MS.gene70532.t1 MTR_3g005530 46.377 69 37 0 8 76 1 69 2.41e-16 74.7
MS.gene70532.t1 MTR_5g066180 47.826 69 36 0 8 76 1 69 3.03e-16 74.7
MS.gene70532.t1 MTR_1g101970 47.826 69 36 0 8 76 1 69 3.11e-16 73.9
MS.gene70532.t1 MTR_2g009890 42.857 84 44 1 8 91 1 80 3.28e-16 75.5
MS.gene70532.t1 MTR_6g464720 48.571 70 35 1 8 76 1 70 4.68e-16 74.7
MS.gene70532.t1 MTR_8g087860 35.965 114 69 2 2 112 11 123 4.72e-16 74.3
MS.gene70532.t1 MTR_8g033270 43.529 85 44 2 8 90 1 83 8.31e-16 73.9
MS.gene70532.t1 MTR_8g022970 28.750 160 99 3 10 162 19 170 9.69e-16 72.4
MS.gene70532.t1 MTR_1g053070 47.222 72 38 0 8 79 1 72 1.21e-15 73.6
MS.gene70532.t1 MTR_3g452380 46.667 75 38 1 2 76 12 84 1.64e-15 72.8
MS.gene70532.t1 MTR_4g109830 31.953 169 91 6 8 172 1 149 1.71e-15 72.8
MS.gene70532.t1 MTR_0003s0590 45.000 80 44 0 8 87 1 80 2.97e-15 72.4
MS.gene70532.t1 MTR_3g102570 38.835 103 60 2 8 109 1 101 3.20e-15 73.2
MS.gene70532.t1 MTR_5g031000 44.928 69 38 0 8 76 1 69 6.35e-15 71.2
MS.gene70532.t1 MTR_5g031000 44.928 69 38 0 8 76 1 69 6.56e-15 70.9
MS.gene70532.t1 MTR_3g109930 26.829 164 102 4 27 181 20 174 7.28e-15 69.7
MS.gene70532.t1 MTR_5g032150 31.609 174 85 6 8 172 1 149 1.66e-14 70.1
MS.gene70532.t1 MTR_2g017865 44.928 69 38 0 8 76 16 84 1.70e-14 70.5
MS.gene70532.t1 MTR_5g032520 33.908 174 81 8 8 172 1 149 1.99e-14 69.7
MS.gene70532.t1 MTR_7g075870 35.849 106 63 2 10 115 3 103 2.03e-14 69.3
MS.gene70532.t1 MTR_3g437790 28.571 154 88 4 26 168 30 172 2.07e-14 68.9
MS.gene70532.t1 MTR_4g084740 44.444 72 39 1 8 78 1 72 2.73e-14 70.5
MS.gene70532.t1 MTR_4g051538 47.619 84 44 0 1 84 1 84 4.42e-14 68.9
MS.gene70532.t1 MTR_8g033220 41.053 95 48 2 10 96 3 97 6.22e-14 68.6
MS.gene70532.t1 MTR_8g066260 44.286 70 38 1 8 76 1 70 7.10e-14 68.6
MS.gene70532.t1 MTR_8g033220 41.053 95 48 2 10 96 3 97 7.38e-14 68.2
MS.gene70532.t1 MTR_7g016630 40.541 74 43 1 8 80 1 74 7.39e-14 68.6
MS.gene70532.t1 MTR_6g015975 42.857 70 39 1 8 76 1 70 2.70e-13 67.0
MS.gene70532.t1 MTR_7g075870 35.514 107 63 3 10 115 3 104 3.47e-13 66.2
MS.gene70532.t1 MTR_5g046790 30.328 122 76 3 8 124 1 118 4.43e-13 65.9
MS.gene70532.t1 MTR_2g461710 49.123 57 29 0 8 64 1 57 4.76e-13 62.0
MS.gene70532.t1 MTR_1g038300 45.070 71 37 1 8 76 1 71 8.74e-13 65.5
MS.gene70532.t1 MTR_7g016600 41.429 70 40 1 8 76 1 70 1.60e-12 64.7
MS.gene70532.t1 MTR_5g066960 48.276 58 30 0 8 65 1 58 1.96e-12 60.5
MS.gene70532.t1 MTR_5g021270 43.662 71 38 1 8 76 1 71 2.45e-12 63.9
MS.gene70532.t1 MTR_5g021270 43.662 71 38 1 8 76 1 71 2.48e-12 63.9
MS.gene70532.t1 MTR_5g046870 41.429 70 40 1 8 76 1 70 2.51e-12 61.6
MS.gene70532.t1 MTR_4g093030 34.906 106 64 1 8 108 1 106 3.43e-12 62.4
MS.gene70532.t1 MTR_3g088615 38.028 71 42 1 8 76 1 71 3.49e-12 62.8
MS.gene70532.t1 MTR_3g113030 40.845 71 40 1 8 76 1 71 8.55e-12 62.4
MS.gene70532.t1 MTR_3g084980 47.368 57 30 0 8 64 1 57 9.21e-12 62.8
MS.gene70532.t1 MTR_4g036050 34.694 98 58 3 8 99 1 98 1.12e-11 61.6
MS.gene70532.t1 MTR_4g036050 34.694 98 58 3 8 99 1 98 1.16e-11 61.6
MS.gene70532.t1 MTR_4g036050 34.694 98 58 3 8 99 1 98 1.26e-11 61.2
MS.gene70532.t1 MTR_4g036050 34.694 98 58 3 8 99 1 98 1.35e-11 61.2
MS.gene70532.t1 MTR_4g109810 26.036 169 105 4 8 175 1 150 1.48e-11 62.0
MS.gene70532.t1 MTR_7g075850 42.254 71 39 1 8 76 1 71 1.64e-11 62.0
MS.gene70532.t1 MTR_8g097090 45.614 57 31 0 8 64 1 57 1.67e-11 62.0
MS.gene70532.t1 MTR_1g029670 36.620 71 43 1 8 76 1 71 1.68e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70532.t1 AT5G60440 53.297 182 80 3 5 183 3 182 1.65e-57 184
MS.gene70532.t1 AT2G24840 55.975 159 65 2 7 162 61 217 3.32e-55 176
MS.gene70532.t1 AT4G36590 42.632 190 92 4 5 186 3 183 9.77e-41 139
MS.gene70532.t1 AT1G01530 37.306 193 109 4 5 196 3 184 1.40e-36 128
MS.gene70532.t1 AT1G65360 37.306 193 110 4 5 196 3 185 1.42e-32 117
MS.gene70532.t1 AT2G34440 36.095 169 101 4 8 171 1 167 4.82e-27 101
MS.gene70532.t1 AT3G04100 32.121 165 108 3 2 162 7 171 3.99e-24 95.1
MS.gene70532.t1 AT3G66656 40.299 134 71 3 8 134 1 132 1.18e-23 93.2
MS.gene70532.t1 AT1G28460 34.722 144 90 2 1 141 1 143 1.59e-21 87.8
MS.gene70532.t1 AT1G72350 36.364 154 65 4 9 162 43 163 1.61e-21 88.6
MS.gene70532.t1 AT2G45650 34.091 176 86 5 8 156 1 173 1.22e-18 81.6
MS.gene70532.t1 AT4G22950 40.000 120 61 4 10 124 3 116 4.45e-18 78.2
MS.gene70532.t1 AT4G22950 40.000 120 61 4 10 124 3 116 1.86e-17 77.8
MS.gene70532.t1 AT4G22950 40.000 120 61 4 10 124 3 116 1.86e-17 77.8
MS.gene70532.t1 AT4G37940 47.826 69 36 0 8 76 1 69 3.17e-17 77.0
MS.gene70532.t1 AT4G37940 47.826 69 36 0 8 76 1 69 3.53e-17 77.4
MS.gene70532.t1 AT4G37940 47.826 69 36 0 8 76 1 69 3.67e-17 75.9
MS.gene70532.t1 AT3G57230 44.928 69 38 0 8 76 1 69 4.09e-17 75.1
MS.gene70532.t1 AT1G28450 30.612 147 95 3 1 141 1 146 1.08e-16 75.1
MS.gene70532.t1 AT1G17310 34.615 156 66 3 9 164 48 167 1.15e-16 75.5
MS.gene70532.t1 AT4G24540 32.530 166 95 4 8 173 1 149 1.19e-16 75.5
MS.gene70532.t1 AT1G17310 34.615 156 66 3 9 164 59 178 1.23e-16 75.9
MS.gene70532.t1 AT5G51870 49.315 73 37 0 4 76 20 92 1.82e-16 74.7
MS.gene70532.t1 AT1G29962 35.294 119 73 2 1 116 1 118 1.84e-16 74.3
MS.gene70532.t1 AT3G57230 44.928 69 38 0 8 76 1 69 2.06e-16 75.5
MS.gene70532.t1 AT3G57230 44.928 69 38 0 8 76 1 69 2.06e-16 75.5
MS.gene70532.t1 AT5G51870 52.239 67 32 0 10 76 3 69 3.06e-16 73.6
MS.gene70532.t1 AT2G22630 47.826 69 36 0 8 76 1 69 3.31e-16 74.7
MS.gene70532.t1 AT2G22630 47.826 69 36 0 8 76 1 69 3.31e-16 74.7
MS.gene70532.t1 AT2G22540 36.842 133 76 3 8 132 1 133 3.40e-16 74.7
MS.gene70532.t1 AT2G22540 36.842 133 76 3 8 132 1 133 3.40e-16 74.7
MS.gene70532.t1 AT1G47760 41.176 85 48 1 8 92 1 83 4.76e-16 73.2
MS.gene70532.t1 AT5G51870 52.239 67 32 0 10 76 3 69 4.77e-16 73.9
MS.gene70532.t1 AT5G51870 50.000 70 35 0 7 76 10 79 6.39e-16 73.9
MS.gene70532.t1 AT5G13790 40.179 112 64 2 8 118 1 110 7.69e-16 74.3
MS.gene70532.t1 AT4G09960 44.928 69 38 0 8 76 1 69 8.24e-16 73.2
MS.gene70532.t1 AT4G09960 44.928 69 38 0 8 76 1 69 9.49e-16 73.6
MS.gene70532.t1 AT4G09960 44.928 69 38 0 8 76 2 70 9.63e-16 73.6
MS.gene70532.t1 AT5G51870 52.239 67 32 0 10 76 3 69 1.05e-15 73.2
MS.gene70532.t1 AT5G62165 39.241 79 48 0 10 88 3 81 1.21e-15 70.1
MS.gene70532.t1 AT4G09960 44.928 69 38 0 8 76 11 79 1.23e-15 73.2
MS.gene70532.t1 AT4G09960 40.789 76 45 0 1 76 20 95 1.67e-15 73.2
MS.gene70532.t1 AT2G45660 45.588 68 37 0 10 77 3 70 1.90e-15 71.2
MS.gene70532.t1 AT5G62165 39.241 79 48 0 10 88 3 81 2.13e-15 70.9
MS.gene70532.t1 AT5G62165 39.241 79 48 0 10 88 3 81 2.13e-15 70.9
MS.gene70532.t1 AT5G62165 39.241 79 48 0 10 88 3 81 2.13e-15 70.9
MS.gene70532.t1 AT3G30260 47.143 70 36 1 8 76 1 70 2.59e-15 72.4
MS.gene70532.t1 AT5G62165 39.241 79 48 0 10 88 3 81 2.64e-15 70.5
MS.gene70532.t1 AT5G62165 39.241 79 48 0 10 88 3 81 2.64e-15 70.5
MS.gene70532.t1 AT5G62165 39.241 79 48 0 10 88 3 81 2.64e-15 70.5
MS.gene70532.t1 AT5G62165 39.241 79 48 0 10 88 3 81 2.64e-15 70.5
MS.gene70532.t1 AT5G62165 39.241 79 48 0 10 88 3 81 2.64e-15 70.5
MS.gene70532.t1 AT3G57390 36.508 126 69 4 8 124 1 124 3.26e-15 72.0
MS.gene70532.t1 AT3G58780 43.750 80 40 1 8 82 16 95 4.00e-15 72.0
MS.gene70532.t1 AT3G58780 43.750 80 40 1 8 82 22 101 4.19e-15 72.0
MS.gene70532.t1 AT2G42830 42.500 80 41 1 8 82 16 95 4.26e-15 72.0
MS.gene70532.t1 AT4G09960 44.928 69 38 0 8 76 96 164 4.29e-15 72.8
MS.gene70532.t1 AT2G45660 45.588 68 37 0 10 77 3 70 4.58e-15 71.2
MS.gene70532.t1 AT1G77950 32.258 155 99 4 8 160 1 151 4.61e-15 72.0
MS.gene70532.t1 AT1G77950 32.258 155 99 4 8 160 1 151 4.61e-15 72.0
MS.gene70532.t1 AT1G77950 32.258 155 99 4 8 160 1 151 4.61e-15 72.0
MS.gene70532.t1 AT1G77950 32.258 155 99 4 8 160 1 151 4.61e-15 72.0
MS.gene70532.t1 AT3G57390 36.508 126 69 4 8 124 1 124 4.66e-15 72.0
MS.gene70532.t1 AT2G42830 42.500 80 41 1 8 82 16 95 4.75e-15 71.6
MS.gene70532.t1 AT5G13790 47.826 69 36 0 8 76 1 69 4.90e-15 72.0
MS.gene70532.t1 AT5G62165 39.241 79 48 0 10 88 3 81 5.36e-15 70.9
MS.gene70532.t1 AT5G62165 39.241 79 48 0 10 88 3 81 5.36e-15 70.9
MS.gene70532.t1 AT5G62165 39.241 79 48 0 10 88 3 81 6.80e-15 70.9
MS.gene70532.t1 AT5G62165 39.241 79 48 0 10 88 3 81 6.80e-15 70.9
MS.gene70532.t1 AT5G62165 39.241 79 48 0 10 88 3 81 6.80e-15 70.9
MS.gene70532.t1 AT1G71692 46.479 71 37 1 8 77 1 71 1.05e-14 70.1
MS.gene70532.t1 AT3G58780 43.750 80 40 1 8 82 16 95 1.08e-14 71.2
MS.gene70532.t1 AT2G14210 45.714 70 37 1 8 76 1 70 1.08e-14 70.5
MS.gene70532.t1 AT1G46408 49.351 77 35 2 10 82 5 81 1.22e-14 70.9
MS.gene70532.t1 AT2G14210 45.714 70 37 1 8 76 1 70 1.29e-14 70.5
MS.gene70532.t1 AT3G61120 44.928 69 38 0 8 76 1 69 1.63e-14 70.1
MS.gene70532.t1 AT5G10140 45.714 70 37 1 8 76 1 70 1.89e-14 68.6
MS.gene70532.t1 AT1G77980 44.444 72 39 1 8 78 1 72 1.96e-14 70.9
MS.gene70532.t1 AT5G60910 31.515 165 97 4 8 172 1 149 2.09e-14 70.1
MS.gene70532.t1 AT5G23260 46.250 80 41 1 3 80 12 91 2.33e-14 70.1
MS.gene70532.t1 AT5G23260 46.250 80 41 1 3 80 12 91 2.59e-14 70.1
MS.gene70532.t1 AT4G18960 45.588 68 37 0 9 76 18 85 2.62e-14 69.7
MS.gene70532.t1 AT5G10140 45.714 70 37 1 8 76 1 70 3.60e-14 68.2
MS.gene70532.t1 AT5G10140 45.714 70 37 1 8 76 1 70 4.07e-14 68.2
MS.gene70532.t1 AT5G10140 45.714 70 37 1 8 76 1 70 4.29e-14 68.2
MS.gene70532.t1 AT1G22130 43.210 81 44 2 8 87 1 80 4.46e-14 70.1
MS.gene70532.t1 AT5G51860 47.761 67 35 0 10 76 3 69 4.55e-14 68.2
MS.gene70532.t1 AT2G22540 36.090 133 72 4 8 132 1 128 5.52e-14 68.6
MS.gene70532.t1 AT5G51860 47.761 67 35 0 10 76 3 69 6.12e-14 68.2
MS.gene70532.t1 AT1G69120 45.714 70 37 1 8 76 1 70 6.28e-14 68.6
MS.gene70532.t1 AT4G11880 37.190 121 64 5 10 124 3 117 7.84e-14 67.4
MS.gene70532.t1 AT4G11880 37.190 121 64 5 10 124 3 117 7.84e-14 67.4
MS.gene70532.t1 AT1G26310 33.871 124 71 5 8 124 1 120 8.55e-14 68.6
MS.gene70532.t1 AT1G69120 45.714 70 37 1 8 76 1 70 1.20e-13 68.2
MS.gene70532.t1 AT4G37435 33.333 174 96 7 8 168 1 167 1.24e-13 67.0
MS.gene70532.t1 AT3G54340 31.405 121 71 2 8 117 1 120 1.27e-13 67.8
MS.gene70532.t1 AT5G65050 47.143 70 36 1 8 76 1 70 2.09e-13 66.2
MS.gene70532.t1 AT5G49490 39.326 89 48 2 10 92 46 134 2.49e-13 67.4
MS.gene70532.t1 AT4G11880 37.190 121 64 5 10 124 3 117 3.50e-13 66.2
MS.gene70532.t1 AT4G11880 37.190 121 64 5 10 124 3 117 3.50e-13 66.2
MS.gene70532.t1 AT5G23260 46.667 75 38 1 8 80 1 75 4.50e-13 66.2
MS.gene70532.t1 AT5G65050 36.434 129 78 4 8 134 1 127 4.76e-13 65.1
MS.gene70532.t1 AT5G23260 46.667 75 38 1 8 80 1 75 4.77e-13 66.2
MS.gene70532.t1 AT5G65050 47.143 70 36 1 8 76 1 70 4.95e-13 65.5
MS.gene70532.t1 AT5G65050 42.222 90 50 2 8 96 1 89 5.60e-13 65.1
MS.gene70532.t1 AT5G38620 41.558 77 41 1 10 82 6 82 6.93e-13 66.6
MS.gene70532.t1 AT5G49420 41.558 77 41 1 10 82 8 84 6.96e-13 66.6
MS.gene70532.t1 AT5G65060 30.387 181 103 4 8 187 1 159 9.36e-13 64.3
MS.gene70532.t1 AT5G65060 47.143 70 36 1 8 76 1 70 1.09e-12 64.3
MS.gene70532.t1 AT5G65060 47.143 70 36 1 8 76 1 70 1.29e-12 64.3
MS.gene70532.t1 AT2G03710 49.123 57 29 0 8 64 1 57 2.31e-12 63.5
MS.gene70532.t1 AT3G58780 41.333 75 42 1 8 82 16 88 2.36e-12 64.3
MS.gene70532.t1 AT5G15800 41.429 70 40 1 8 76 1 70 2.85e-12 64.3
MS.gene70532.t1 AT3G58780 47.458 59 31 0 8 66 16 74 3.77e-12 63.9
MS.gene70532.t1 AT5G65070 40.000 70 41 1 8 76 1 70 4.08e-12 62.0
MS.gene70532.t1 AT1G18750 36.471 85 51 2 8 90 1 84 4.33e-12 64.7
MS.gene70532.t1 AT5G15800 41.429 70 40 1 8 76 1 70 4.70e-12 63.5
MS.gene70532.t1 AT1G18750 36.471 85 51 2 8 90 1 84 5.18e-12 64.3
MS.gene70532.t1 AT5G04640 43.038 79 41 2 10 84 5 83 5.28e-12 63.9
MS.gene70532.t1 AT1G18750 36.471 85 51 2 8 90 1 84 5.58e-12 64.3
MS.gene70532.t1 AT2G03710 49.123 57 29 0 8 64 1 57 6.48e-12 63.2
MS.gene70532.t1 AT2G03710 49.123 57 29 0 8 64 1 57 6.54e-12 63.2
MS.gene70532.t1 AT5G20240 38.028 71 42 1 8 76 1 71 9.28e-12 60.8
MS.gene70532.t1 AT5G65070 40.000 70 41 1 8 76 1 70 9.93e-12 62.0
MS.gene70532.t1 AT3G02310 45.614 57 31 0 8 64 1 57 1.12e-11 61.6
MS.gene70532.t1 AT5G20240 38.028 71 42 1 8 76 1 71 1.35e-11 61.6
MS.gene70532.t1 AT1G24260 45.614 57 31 0 8 64 1 57 1.75e-11 62.0
MS.gene70532.t1 AT1G24260 45.614 57 31 0 8 64 1 57 1.82e-11 61.6
MS.gene70532.t1 AT1G24260 45.614 57 31 0 8 64 1 57 1.85e-11 62.0
MS.gene70532.t1 AT5G65080 38.961 77 46 1 1 76 1 77 2.25e-11 60.8
MS.gene70532.t1 AT5G65070 40.000 70 41 1 8 76 1 70 2.41e-11 61.2
MS.gene70532.t1 AT3G02310 45.614 57 31 0 8 64 1 57 2.62e-11 61.6
MS.gene70532.t1 AT5G65070 40.000 70 41 1 8 76 1 70 3.59e-11 60.5
MS.gene70532.t1 AT5G65080 41.935 62 36 0 1 62 1 62 6.25e-11 59.7

Find 38 sgRNAs with CRISPR-Local

Find 54 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATGAATTGCTCCAATTAA+AGG 0.119085 3.1:+67471980 MS.gene70532:CDS
CCTCAATAGAAACCTTTAAT+TGG 0.230669 3.1:-67471992 None:intergenic
AAGCTAGGCAAACGCAATTT+TGG 0.240664 3.1:+67471928 MS.gene70532:CDS
GCCAAATGAAAAGGCCTTAT+TGG 0.240870 3.1:-67471718 None:intergenic
TCTTCAAATATTGGAGCTAA+TGG 0.264087 3.1:+67472077 MS.gene70532:CDS
AATGTTTCTTCTTCAAATAT+TGG 0.290840 3.1:+67472068 MS.gene70532:CDS
AAACCAAGATAATAGCTATT+AGG 0.328747 3.1:-67472137 None:intergenic
GCGAGCTTTGTACTCTTTGT+GGG 0.351326 3.1:+67471664 MS.gene70532:CDS
TTCAAGCCAAGTTCATCAAC+AGG 0.363427 3.1:-67471960 None:intergenic
CTTCCTAATAGCTATTATCT+TGG 0.392270 3.1:+67472134 MS.gene70532:CDS
TCAATGATAGACTCAACTTC+TGG 0.393804 3.1:-67471744 None:intergenic
AGCGAGCTTTGTACTCTTTG+TGG 0.399076 3.1:+67471663 MS.gene70532:CDS
CCAATTAAAGGTTTCTATTG+AGG 0.402441 3.1:+67471992 MS.gene70532:CDS
TTCTGGATGGCCAAATGAAA+AGG 0.462388 3.1:-67471727 None:intergenic
GAGGACCTCAGGAAGAATCT+TGG 0.482352 3.1:+67472011 MS.gene70532:CDS
AATATTTGAAGAAGAAACAT+TGG 0.484454 3.1:-67472066 None:intergenic
GAAAGCCCTGTTGATGAACT+TGG 0.488472 3.1:+67471954 MS.gene70532:CDS
AGGTTTCTATTGAGGACCTC+AGG 0.504170 3.1:+67472000 MS.gene70532:CDS
CACATTGAGATCGCGGACAT+TGG 0.511795 3.1:-67471835 None:intergenic
TTCTATGAGCCTCAACAAGT+TGG 0.515367 3.1:-67471809 None:intergenic
AGATAATAGCTATTAGGAAG+TGG 0.515794 3.1:-67472131 None:intergenic
AATGAAAAGGCCTTATTGGC+CGG 0.531850 3.1:-67471714 None:intergenic
GATAATAGCTATTAGGAAGT+GGG 0.532917 3.1:-67472130 None:intergenic
GCTTCTTCTCAATCTCAAGA+TGG 0.540170 3.1:-67471878 None:intergenic
AATTGCTAGCAAATGCATGA+TGG 0.549591 3.1:+67472037 MS.gene70532:CDS
GCTTTGTACTCTTTGTGGGG+TGG 0.554210 3.1:+67471668 MS.gene70532:CDS
TTGAGATTGAGAAGAAGCAA+GGG 0.559206 3.1:+67471883 MS.gene70532:CDS
TAGATCATGTGAGAAAAGCT+AGG 0.577921 3.1:+67471913 MS.gene70532:CDS
TGGTGAGAACTAGACTCTTG+TGG 0.583837 3.1:-67471789 None:intergenic
TAGTTCTCACCAACTTGTTG+AGG 0.589387 3.1:+67471800 MS.gene70532:CDS
CGAGCTTTGTACTCTTTGTG+GGG 0.591598 3.1:+67471665 MS.gene70532:CDS
CTTGAGATTGAGAAGAAGCA+AGG 0.611768 3.1:+67471882 MS.gene70532:CDS
TGATAGACTCAACTTCTGGA+TGG 0.619728 3.1:-67471740 None:intergenic
ATAATAGCTATTAGGAAGTG+GGG 0.630969 3.1:-67472129 None:intergenic
TTAGTTGCACATTGAGATCG+CGG 0.641507 3.1:-67471842 None:intergenic
TCAAGCCAAGTTCATCAACA+GGG 0.666202 3.1:-67471959 None:intergenic
TGAGATTGAGAAGAAGCAAG+GGG 0.668695 3.1:+67471884 MS.gene70532:CDS
TGAGAACTAGACTCTTGTGG+AGG 0.704318 3.1:-67471786 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTTGAAGAAGAAACAT+TGG - chr3.1:67472069-67472088 None:intergenic 20.0%
!! AATGTTTCTTCTTCAAATAT+TGG + chr3.1:67472068-67472087 MS.gene70532:CDS 20.0%
!!! ACTTGTAAATGACTTTTTTT+AGG - chr3.1:67471603-67471622 None:intergenic 20.0%
!!! TTTTAGGTATTTTCTCAATA+GGG - chr3.1:67471587-67471606 None:intergenic 20.0%
!!! TTTTTAGGTATTTTCTCAAT+AGG - chr3.1:67471588-67471607 None:intergenic 20.0%
! AAACCAAGATAATAGCTATT+AGG - chr3.1:67472140-67472159 None:intergenic 25.0%
!!! TCAAAGAAAAAGACTAGTTT+AGG + chr3.1:67471549-67471568 MS.gene70532:CDS 25.0%
AGATAATAGCTATTAGGAAG+TGG - chr3.1:67472134-67472153 None:intergenic 30.0%
ATAATAGCTATTAGGAAGTG+GGG - chr3.1:67472132-67472151 None:intergenic 30.0%
CCAATTAAAGGTTTCTATTG+AGG + chr3.1:67471992-67472011 MS.gene70532:CDS 30.0%
CCTCAATAGAAACCTTTAAT+TGG - chr3.1:67471995-67472014 None:intergenic 30.0%
CTTCCTAATAGCTATTATCT+TGG + chr3.1:67472134-67472153 MS.gene70532:CDS 30.0%
GAATGAATTGCTCCAATTAA+AGG + chr3.1:67471980-67471999 MS.gene70532:CDS 30.0%
GATAATAGCTATTAGGAAGT+GGG - chr3.1:67472133-67472152 None:intergenic 30.0%
TCTTCAAATATTGGAGCTAA+TGG + chr3.1:67472077-67472096 MS.gene70532:CDS 30.0%
!!! ATTGGAGCTAATGGATTTTT+AGG + chr3.1:67472086-67472105 MS.gene70532:CDS 30.0%
!!! CTAATGGATTTTTAGGTGTA+GGG + chr3.1:67472093-67472112 MS.gene70532:CDS 30.0%
AATTGCTAGCAAATGCATGA+TGG + chr3.1:67472037-67472056 MS.gene70532:CDS 35.0%
TAGATCATGTGAGAAAAGCT+AGG + chr3.1:67471913-67471932 MS.gene70532:CDS 35.0%
TCAATGATAGACTCAACTTC+TGG - chr3.1:67471747-67471766 None:intergenic 35.0%
TTGAGATTGAGAAGAAGCAA+GGG + chr3.1:67471883-67471902 MS.gene70532:CDS 35.0%
! TTTTTCCAAGATTCTTCCTG+AGG - chr3.1:67472019-67472038 None:intergenic 35.0%
!!! GCTAATGGATTTTTAGGTGT+AGG + chr3.1:67472092-67472111 MS.gene70532:CDS 35.0%
!!! TGCAATTGTTGTTTTCTCTC+CGG + chr3.1:67471695-67471714 MS.gene70532:CDS 35.0%
CTTGAGATTGAGAAGAAGCA+AGG + chr3.1:67471882-67471901 MS.gene70532:CDS 40.0%
GCTTCTTCTCAATCTCAAGA+TGG - chr3.1:67471881-67471900 None:intergenic 40.0%
TCAAGCCAAGTTCATCAACA+GGG - chr3.1:67471962-67471981 None:intergenic 40.0%
TGAGATTGAGAAGAAGCAAG+GGG + chr3.1:67471884-67471903 MS.gene70532:CDS 40.0%
TGATAGACTCAACTTCTGGA+TGG - chr3.1:67471743-67471762 None:intergenic 40.0%
TTAGTTGCACATTGAGATCG+CGG - chr3.1:67471845-67471864 None:intergenic 40.0%
TTCAAGCCAAGTTCATCAAC+AGG - chr3.1:67471963-67471982 None:intergenic 40.0%
TTCTATGAGCCTCAACAAGT+TGG - chr3.1:67471812-67471831 None:intergenic 40.0%
TTCTGGATGGCCAAATGAAA+AGG - chr3.1:67471730-67471749 None:intergenic 40.0%
! AAGCTAGGCAAACGCAATTT+TGG + chr3.1:67471928-67471947 MS.gene70532:CDS 40.0%
! GCCAAATGAAAAGGCCTTAT+TGG - chr3.1:67471721-67471740 None:intergenic 40.0%
! GCCAATAAGGCCTTTTCATT+TGG + chr3.1:67471717-67471736 MS.gene70532:CDS 40.0%
! TCGTTCCGGACTTTTCAAAA+AGG + chr3.1:67471638-67471657 MS.gene70532:CDS 40.0%
!! AATGAAAAGGCCTTATTGGC+CGG - chr3.1:67471717-67471736 None:intergenic 40.0%
!! ACATTTTCTAAGCGTCGTTC+CGG + chr3.1:67471624-67471643 MS.gene70532:CDS 40.0%
!! TAGGCAAACGCAATTTTGGT+GGG + chr3.1:67471932-67471951 MS.gene70532:CDS 40.0%
!! TAGTTCTCACCAACTTGTTG+AGG + chr3.1:67471800-67471819 MS.gene70532:CDS 40.0%
!!! GCTAGCCTTTTTGAAAAGTC+CGG - chr3.1:67471646-67471665 None:intergenic 40.0%
AGGTTTCTATTGAGGACCTC+AGG + chr3.1:67472000-67472019 MS.gene70532:CDS 45.0%
TGAGAACTAGACTCTTGTGG+AGG - chr3.1:67471789-67471808 None:intergenic 45.0%
TGGTGAGAACTAGACTCTTG+TGG - chr3.1:67471792-67471811 None:intergenic 45.0%
! AGCGAGCTTTGTACTCTTTG+TGG + chr3.1:67471663-67471682 MS.gene70532:CDS 45.0%
! CGAGCTTTGTACTCTTTGTG+GGG + chr3.1:67471665-67471684 MS.gene70532:CDS 45.0%
! CTAGGCAAACGCAATTTTGG+TGG + chr3.1:67471931-67471950 MS.gene70532:CDS 45.0%
! GAAAGCCCTGTTGATGAACT+TGG + chr3.1:67471954-67471973 MS.gene70532:CDS 45.0%
! GCGAGCTTTGTACTCTTTGT+GGG + chr3.1:67471664-67471683 MS.gene70532:CDS 45.0%
! TGTTTTCTCTCCGGCCAATA+AGG + chr3.1:67471704-67471723 MS.gene70532:CDS 45.0%
CACATTGAGATCGCGGACAT+TGG - chr3.1:67471838-67471857 None:intergenic 50.0%
GAGGACCTCAGGAAGAATCT+TGG + chr3.1:67472011-67472030 MS.gene70532:CDS 50.0%
GCTTTGTACTCTTTGTGGGG+TGG + chr3.1:67471668-67471687 MS.gene70532:CDS 50.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 67471546 67472169 67471546 ID=MS.gene70532
chr3.1 mRNA 67471546 67472169 67471546 ID=MS.gene70532.t1;Parent=MS.gene70532
chr3.1 exon 67471546 67472169 67471546 ID=MS.gene70532.t1.exon1;Parent=MS.gene70532.t1
chr3.1 CDS 67471546 67472169 67471546 ID=cds.MS.gene70532.t1;Parent=MS.gene70532.t1
Gene Sequence

>MS.gene70532

ATGTCAAAGAAAAAGACTAGTTTAGGTCGTCAAAAAATCCCTATTGAGAAAATACCTAAAAAAAGTCATTTACAAGTTACATTTTCTAAGCGTCGTTCCGGACTTTTCAAAAAGGCTAGCGAGCTTTGTACTCTTTGTGGGGTGGAAATTGCAATTGTTGTTTTCTCTCCGGCCAATAAGGCCTTTTCATTTGGCCATCCAGAAGTTGAGTCTATCATTGATCGTTATCTTAGTCGAAATCCTCCACAAGAGTCTAGTTCTCACCAACTTGTTGAGGCTCATAGAAATGCCAATGTCCGCGATCTCAATGTGCAACTAACTCAACTTCTTAGCCATCTTGAGATTGAGAAGAAGCAAGGGGAAGAGATAGATCATGTGAGAAAAGCTAGGCAAACGCAATTTTGGTGGGAAAGCCCTGTTGATGAACTTGGCTTGAATGAATTGCTCCAATTAAAGGTTTCTATTGAGGACCTCAGGAAGAATCTTGGAAAAATTGCTAGCAAATGCATGATGGAACAATCCAATGTTTCTTCTTCAAATATTGGAGCTAATGGATTTTTAGGTGTAGGGATTAATATTGCTTCCCCACTTCCTAATAGCTATTATCTTGGTTTTCGAATTTGA
Protein sequence

>MS.gene70532.t1

MSKKKTSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPANKAFSFGHPEVESIIDRYLSRNPPQESSSHQLVEAHRNANVRDLNVQLTQLLSHLEIEKKQGEEIDHVRKARQTQFWWESPVDELGLNELLQLKVSIEDLRKNLGKIASKCMMEQSNVSSSNIGANGFLGVGINIASPLPNSYYLGFRI