AlfalfaGEDB | MS.gene70606

M. sativa cultivar XinJiangDaYe / MS.gene70606

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70606.t1	XP_013461023.1	97.4	607	16	0	1	607	37	643	6.30E-288	999.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70606.t1	O48788	39.1	302	168	7	300	588	314	612	9.6e-51	203.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70606.t1	A0A072UZR6	97.4	607	16	0	1	607	37	643	4.6e-288	999.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70606.t1	MTR_3g078250	96.870	607	19	0	1	607	37	643	0.0	1215
MS.gene70606.t1	MTR_2g023150	57.836	268	105	2	339	606	1	260	9.42e-103	312
MS.gene70606.t1	MTR_1g110280	32.598	635	339	17	10	596	45	638	8.65e-93	300
MS.gene70606.t1	MTR_1g061590	33.652	627	341	20	20	598	50	649	3.69e-89	290
MS.gene70606.t1	MTR_3g093710	33.498	609	344	16	15	601	51	620	9.38e-89	288
MS.gene70606.t1	MTR_6g470960	32.750	629	375	18	15	607	44	660	1.12e-84	278
MS.gene70606.t1	MTR_5g075630	34.224	599	345	18	15	599	68	631	9.48e-84	275
MS.gene70606.t1	MTR_5g078080	33.773	607	351	20	15	601	46	621	4.46e-82	270
MS.gene70606.t1	MTR_8g099195	31.751	611	354	16	6	599	35	599	6.16e-81	268
MS.gene70606.t1	MTR_7g103440	31.797	629	358	21	20	598	55	662	2.76e-79	265

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70606.t1	AT2G26730	35.017	594	353	14	7	588	40	612	5.20e-96	308
MS.gene70606.t1	AT2G36570	34.340	629	336	21	19	598	48	648	9.19e-90	292
MS.gene70606.t1	AT1G68400	33.874	617	343	17	15	596	51	637	6.00e-89	290
MS.gene70606.t1	AT1G48480	33.721	602	351	20	15	588	54	635	5.91e-87	284
MS.gene70606.t1	AT5G24100	32.387	599	338	16	14	589	51	605	2.83e-84	276
MS.gene70606.t1	AT1G64210	31.974	613	323	17	15	601	43	587	2.27e-83	273
MS.gene70606.t1	AT5G58300	32.343	606	358	18	15	603	67	637	9.53e-82	270
MS.gene70606.t1	AT5G58300	32.343	606	358	18	15	603	67	637	9.53e-82	270
MS.gene70606.t1	AT5G58300	32.343	606	358	18	15	603	67	637	9.53e-82	270
MS.gene70606.t1	AT3G08680	31.728	602	342	18	15	588	47	607	1.14e-80	267

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Find 120 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCATGGAAGCCTATACA+AGG	0.620276	3.1:-64206892	MS.gene70606:CDS
AAAGTGGACACTCTCTTGAT+TGG	0.455074	3.1:-64206302	MS.gene70606:CDS
AAATCTCGATCATCTGTCAA+AGG	0.570198	3.1:+64205756	None:intergenic
AACATGAAGAGGCTACCATT+TGG	0.521071	3.1:+64206693	None:intergenic
AACCATATTCGGAAGGTTTC+CGG	0.222168	3.1:+64207556	None:intergenic
AACCCACAAATAAGCGAATA+TGG	0.383373	3.1:-64206153	MS.gene70606:CDS
AAGAATGGTGAACTTGTTGC+AGG	0.483012	3.1:-64205881	MS.gene70606:CDS
AAGAATTGGTTTAATGGCCT+TGG	0.330656	3.1:-64207053	MS.gene70606:CDS
AAGGCTGAGGTATTGAAGAG+AGG	0.541754	3.1:+64207739	None:intergenic
AAGTTGGAGAAATCAAAATC+AGG	0.498633	3.1:+64207476	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTTGGAGAAATCAAAATC+AGG	+	chr3.1:64206212-64206231	None:intergenic	30.0%
AATAAGCGAATATGGTCTAA+TGG	-	chr3.1:64207540-64207559	MS.gene70606:CDS	30.0%
ACTATGTAGCCTGAATAAAT+TGG	+	chr3.1:64206434-64206453	None:intergenic	30.0%
AGAGCTGATATATATTCCTT+TGG	-	chr3.1:64207637-64207656	MS.gene70606:CDS	30.0%
ATGACCAAAAATAGAGAAAC+AGG	-	chr3.1:64206506-64206525	MS.gene70606:intron	30.0%
ATTGGCAAATCATCAAGAAA+TGG	+	chr3.1:64206416-64206435	None:intergenic	30.0%
CTCATACTTAGCTTATCATT+TGG	+	chr3.1:64207856-64207875	None:intergenic	30.0%
CTGAGTCTAAATTTCAATTC+AGG	+	chr3.1:64207313-64207332	None:intergenic	30.0%
CTTCTTACTTTGCATTTCAA+TGG	+	chr3.1:64207072-64207091	None:intergenic	30.0%
GACGTTAAAAACTTCAAAGT+TGG	+	chr3.1:64206228-64206247	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	64205765	64207942	64205765	ID=MS.gene70606
chr3.1	mRNA	64205765	64207942	64205765	ID=MS.gene70606.t1;Parent=MS.gene70606
chr3.1	exon	64206685	64207942	64206685	ID=MS.gene70606.t1.exon1;Parent=MS.gene70606.t1
chr3.1	CDS	64206685	64207942	64206685	ID=cds.MS.gene70606.t1;Parent=MS.gene70606.t1
chr3.1	exon	64205765	64206330	64205765	ID=MS.gene70606.t1.exon2;Parent=MS.gene70606.t1
chr3.1	CDS	64205765	64206330	64205765	ID=cds.MS.gene70606.t1;Parent=MS.gene70606.t1

Gene Sequence

>MS.gene70606

ATGCATCAACTTGAACCACCCGATCAGAATTCCATGTGGGGTTGGAACCTCACATCAGATCCATGCACTCATAACTGGCACGGCGTAACTTGCTACGCAAACAACCAATACATTAAGACTATAGTTCTTGACAACCTTTATTTCACCGGTGTTCTAGACGCTACTTCTCTTTGCATTGCTACCTCTCTTCAATACCTCAGCCTTAACAACAATTACTTACACGGTTTTATATCGGAGGATATAAAAGACTGTAAGTTCTTGACACACTTGCTTCTTAGTGGTAACAAATTCTCTGGCAATCTTCCTGCTTCCATTCCTCAACTACTTAACATGAAGCGCCTTCATGTTTCGGACAATCTCTTCACCGGAAACCTTCCGAATATGGTTAATGTTACAAGCTTGATATCTTTTTTAGCACAAAACAACAACTTCACCGGTCAGATTCCTGATTTTGATTTCTCCAACTTTGAAGTTTTTAACGTCTCTAACAACAATTTACGTGGTCCTATTCCTGATGTTGGAGGTAGATTTAATGCAGATAGCTTTTATGGTAATCCTAATTTATGTGGAAAACCAATTTCAAACTCGTCATGTCCGCCTCCACCACCACCTCCTCCTCCAATCATTATAAAAGACAAAAAGAAAAATCCATTTCTTGATGATTTGCCAATTTATTCAGGCTACATAGTTATTGGTTTAATTTTCATAATTTTCTTGATCTTCAAGTTGTCAAGAAAATGCATGACCAAAAATAGAGAAACAGGATTAGATCATGTTGAAAAGAAGGACATGTCACAAGACACTAGCGGTGGCGTTGTTATTGTTGGTGGTGAAAAGCTTAGTGAGATATTAAATTCAAATGGATCAAAGAATTGGTTTAATGGCCTTGGAGTTAGATCAGAGTATTCTATGACATCTATGGAAAGTGGAGTGACTACATCAGGTCTTGTTCTTCTTTCAAGTAGAAAGCTTAGGGGATTGCAATTTGAGGATTTGTTAAGTGCTCCTGCTGAATTGATTAGGAGAGGAAAGCATGGAAGCCTATACAAGGTTATGCTAGATAATGGTGTGCTTTTGGCTGTGAAGAGGATCAAGGATTGGGGGATTTCGAAGCATGAATTCGAGAGAAGGATGAACTTGATAGCTCAAGTGAAGCATACTCTTGTAATGTCACCTGTTGCATACTATTGCTCTCAGCAAGAGAAGCTTCTGGCGTATGAATATCTTCCAAATGGTAGCCTCTTCATGTTGCTCTATGGTAAGTTGCTAATTAATTATTAAGTTGTGTTACTGTGTTATTACATCCATTGAAATGCAAAGTAAGAAGCTAGTGTACGAAGTTTTATGCACTTATCTATAAGATATTTATATAGTCTAAGAGACAATATAGTCAAACTATTTTTATATAAGCTATAAGTTGTTTTTACAAGTTATGGACATGTAATAAGTTGTTTGCATAAGCTCTACCAAACACTTTATCAAGTGCTTATGTCAATAAATAAGTTTATAAAGTAAGCAATTAATTTGTTAGCCTATAAGCACATGCCTGAATTGAAATTTAGACTCAGAATCAACGTAGCCGAATATTTGTACTCACCTTTAATTTCTTCAGGATCTCAAAGTGGACACTCTCTTGATTGGAGGAGCAGACTAGATGTTGCTGCTAAGATCGCTGAAGCTTTGGCCTATATGCATGAAGAGCTTGGTGAGAGTGGAATAGCACATGGTAACTTAAAATCAAGCAATATTCTGTTTGACAAGAATATGAACCCACAAATAAGCGAATATGGTCTAATGGTCGTGGAAAATCAAGGCGTCATCTCTCATATCAGAAGCCGCAGAAACAAAAATATGTCTGCAGCAGCCACCTTCAGAGCTGATATATATTCCTTTGGTGTGATACTTCTCGAACTCCTGACAGGAAAAGTAGTTAAAAATGATGGATTTGATTTGGTTAAATGGGTGAATTCAGTGATCAGTGAGGAATGGACTGCAGAAGTTTTTGATAGGTCTCTAATCTCACAAGGTGCTTCTGAAGAAAGAATGGTGAACTTGTTGCAGGTGGCACTAAAATGCATCAATCCTTCTCCAAATGATAAGCTAAGTATGAGTCAAGTGGCGCTCATCACAAATGCGTTGAAAGATGAAGACGAAAAATCTGTATCCTTTGACAGATGA

Protein sequence

>MS.gene70606.t1

MHQLEPPDQNSMWGWNLTSDPCTHNWHGVTCYANNQYIKTIVLDNLYFTGVLDATSLCIATSLQYLSLNNNYLHGFISEDIKDCKFLTHLLLSGNKFSGNLPASIPQLLNMKRLHVSDNLFTGNLPNMVNVTSLISFLAQNNNFTGQIPDFDFSNFEVFNVSNNNLRGPIPDVGGRFNADSFYGNPNLCGKPISNSSCPPPPPPPPPIIIKDKKKNPFLDDLPIYSGYIVIGLIFIIFLIFKLSRKCMTKNRETGLDHVEKKDMSQDTSGGVVIVGGEKLSEILNSNGSKNWFNGLGVRSEYSMTSMESGVTTSGLVLLSSRKLRGLQFEDLLSAPAELIRRGKHGSLYKVMLDNGVLLAVKRIKDWGISKHEFERRMNLIAQVKHTLVMSPVAYYCSQQEKLLAYEYLPNGSLFMLLYGSQSGHSLDWRSRLDVAAKIAEALAYMHEELGESGIAHGNLKSSNILFDKNMNPQISEYGLMVVENQGVISHIRSRRNKNMSAAATFRADIYSFGVILLELLTGKVVKNDGFDLVKWVNSVISEEWTAEVFDRSLISQGASEERMVNLLQVALKCINPSPNDKLSMSQVALITNALKDEDEKSVSFDR