AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70629

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70629.t1 MTR_3g077750 98.810 336 4 0 1 336 1 336 0.0 689
MS.gene70629.t1 MTR_3g091820 34.320 338 153 17 17 324 5 303 2.55e-40 144
MS.gene70629.t1 MTR_4g461080 55.039 129 42 3 39 159 9 129 4.29e-36 132
MS.gene70629.t1 MTR_2g093220 54.331 127 45 4 38 155 19 141 1.30e-35 131
MS.gene70629.t1 MTR_8g027295 52.800 125 44 4 45 158 10 130 2.09e-35 130
MS.gene70629.t1 MTR_4g063780 58.491 106 37 3 44 142 55 160 2.78e-34 128
MS.gene70629.t1 MTR_2g096740 72.603 73 18 1 50 122 51 121 9.42e-34 126
MS.gene70629.t1 MTR_2g096740 72.603 73 18 1 50 122 66 136 9.98e-34 126
MS.gene70629.t1 MTR_1g077600 53.125 128 46 5 41 163 25 143 1.71e-33 125
MS.gene70629.t1 MTR_1g077600 53.125 128 46 5 41 163 25 143 1.82e-33 125
MS.gene70629.t1 MTR_8g479350 66.197 71 24 0 61 131 68 138 3.78e-31 120
MS.gene70629.t1 MTR_4g022370 69.333 75 20 2 44 115 62 136 1.27e-30 119
MS.gene70629.t1 MTR_7g059400 60.870 92 29 3 27 115 43 130 5.12e-30 117
MS.gene70629.t1 MTR_7g024670 56.122 98 27 3 34 115 34 131 1.08e-29 117
MS.gene70629.t1 MTR_8g068210 67.164 67 22 0 50 116 21 87 1.10e-29 116
MS.gene70629.t1 MTR_3g090430 71.875 64 18 0 52 115 42 105 1.18e-29 116
MS.gene70629.t1 MTR_2g014060 77.049 61 14 0 52 112 16 76 1.77e-29 115
MS.gene70629.t1 MTR_4g088580 81.818 55 10 0 62 116 56 110 2.35e-29 116
MS.gene70629.t1 MTR_8g079060 55.319 94 35 2 52 141 16 106 1.51e-28 110
MS.gene70629.t1 MTR_5g031440 78.571 56 12 0 56 111 38 93 1.57e-28 113
MS.gene70629.t1 MTR_1g056810 71.212 66 19 0 59 124 10 75 3.30e-28 111
MS.gene70629.t1 MTR_8g015840 74.603 63 16 0 56 118 15 77 8.71e-28 108
MS.gene70629.t1 MTR_4g109980 84.314 51 8 0 61 111 40 90 8.33e-27 108
MS.gene70629.t1 MTR_2g014170 84.000 50 8 0 60 109 44 93 5.20e-26 105
MS.gene70629.t1 MTR_2g059540 82.353 51 9 0 59 109 29 79 9.33e-26 102
MS.gene70629.t1 MTR_3g435480 66.667 69 22 1 50 118 126 193 1.54e-25 106
MS.gene70629.t1 MTR_2g013370 47.458 118 42 5 1 116 1 100 2.78e-25 103
MS.gene70629.t1 MTR_4g089095 76.786 56 12 1 61 116 16 70 3.20e-25 102
MS.gene70629.t1 MTR_4g089095 76.786 56 12 1 61 116 50 104 3.36e-25 103
MS.gene70629.t1 MTR_7g010950 43.697 119 59 2 25 136 93 210 4.97e-24 102
MS.gene70629.t1 MTR_4g082060 60.870 69 26 1 50 118 112 179 5.95e-24 102
MS.gene70629.t1 MTR_6g012450 44.545 110 54 1 30 132 98 207 7.58e-24 102
MS.gene70629.t1 MTR_7g086780 42.342 111 58 2 20 130 64 168 1.59e-23 100
MS.gene70629.t1 MTR_6g027450 42.478 113 57 4 7 119 43 147 3.05e-23 98.6
MS.gene70629.t1 MTR_8g044220 53.333 75 34 1 41 115 99 172 6.13e-23 99.4
MS.gene70629.t1 MTR_6g027460 50.617 81 39 1 50 130 86 165 9.03e-23 97.8
MS.gene70629.t1 MTR_5g041420 41.600 125 55 3 12 118 71 195 3.65e-22 95.5
MS.gene70629.t1 MTR_2g016030 66.667 54 18 0 61 114 47 100 4.76e-22 91.3
MS.gene70629.t1 MTR_5g041530 63.793 58 21 0 57 114 136 193 1.95e-20 91.3
MS.gene70629.t1 MTR_5g041400 45.161 93 47 1 26 114 80 172 4.02e-20 90.5
MS.gene70629.t1 MTR_5g041380 68.519 54 17 0 61 114 127 180 9.15e-20 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70629.t1 AT5G62940 42.748 393 145 23 1 334 1 372 7.08e-56 186
MS.gene70629.t1 AT5G60200 66.292 89 27 3 33 121 30 115 2.38e-35 129
MS.gene70629.t1 AT1G51700 47.656 128 54 2 56 170 28 155 7.16e-33 121
MS.gene70629.t1 AT2G28510 56.364 110 35 2 63 160 50 158 5.25e-32 121
MS.gene70629.t1 AT3G45610 43.373 166 68 7 54 212 32 178 2.40e-31 118
MS.gene70629.t1 AT4G24060 50.000 122 46 2 50 156 42 163 2.77e-31 120
MS.gene70629.t1 AT5G02460 70.667 75 19 2 44 115 75 149 4.99e-31 121
MS.gene70629.t1 AT3G55370 65.000 80 25 2 43 119 55 134 7.11e-31 119
MS.gene70629.t1 AT3G55370 65.000 80 25 2 43 119 55 134 9.16e-31 119
MS.gene70629.t1 AT3G55370 65.000 80 25 2 43 119 100 179 1.31e-30 119
MS.gene70629.t1 AT2G37590 64.474 76 24 1 44 116 69 144 1.70e-30 118
MS.gene70629.t1 AT1G07640 69.444 72 19 1 47 115 4 75 6.32e-30 115
MS.gene70629.t1 AT5G60850 66.234 77 20 1 50 120 34 110 6.43e-30 116
MS.gene70629.t1 AT1G07640 69.444 72 19 1 47 115 60 131 1.15e-29 116
MS.gene70629.t1 AT1G07640 69.444 72 19 1 47 115 68 139 1.25e-29 116
MS.gene70629.t1 AT1G64620 52.672 131 47 3 45 164 33 159 1.64e-29 116
MS.gene70629.t1 AT3G61850 65.753 73 23 1 46 118 49 119 3.52e-29 114
MS.gene70629.t1 AT3G61850 65.753 73 23 1 46 118 49 119 3.52e-29 114
MS.gene70629.t1 AT5G65590 62.963 81 25 1 35 115 20 95 3.75e-29 114
MS.gene70629.t1 AT3G61850 65.753 73 23 1 46 118 61 131 4.40e-29 114
MS.gene70629.t1 AT3G61850 65.753 73 23 1 46 118 49 119 6.12e-29 114
MS.gene70629.t1 AT3G61850 65.753 73 23 1 46 118 61 131 6.34e-29 114
MS.gene70629.t1 AT3G52440 68.182 66 21 0 58 123 22 87 1.08e-28 111
MS.gene70629.t1 AT1G28310 82.143 56 10 0 61 116 27 82 1.34e-28 112
MS.gene70629.t1 AT3G52440 68.182 66 21 0 58 123 41 106 2.02e-28 111
MS.gene70629.t1 AT1G28310 82.143 56 10 0 61 116 51 106 2.11e-28 112
MS.gene70629.t1 AT1G21340 69.444 72 19 1 63 134 40 108 3.07e-28 110
MS.gene70629.t1 AT3G21270 54.717 106 42 3 61 164 29 130 4.94e-28 108
MS.gene70629.t1 AT4G21050 59.551 89 33 2 54 142 19 104 5.67e-28 108
MS.gene70629.t1 AT2G28810 65.152 66 22 1 47 112 64 128 5.83e-28 111
MS.gene70629.t1 AT2G28810 65.152 66 22 1 47 112 81 145 1.04e-27 111
MS.gene70629.t1 AT4G00940 53.398 103 31 2 63 151 70 169 8.74e-27 107
MS.gene70629.t1 AT4G00940 53.398 103 31 2 63 151 70 169 8.74e-27 107
MS.gene70629.t1 AT4G00940 53.398 103 31 2 63 151 70 169 8.74e-27 107
MS.gene70629.t1 AT2G46590 55.682 88 36 2 22 108 30 115 2.70e-26 107
MS.gene70629.t1 AT4G38000 60.256 78 30 1 41 117 21 98 2.71e-26 105
MS.gene70629.t1 AT2G46590 55.682 88 36 2 22 108 42 127 2.97e-26 107
MS.gene70629.t1 AT3G50410 75.439 57 14 0 61 117 30 86 7.22e-26 104
MS.gene70629.t1 AT5G66940 70.968 62 18 0 61 122 32 93 1.06e-25 103
MS.gene70629.t1 AT1G47655 73.684 57 13 1 55 109 21 77 6.13e-25 100
MS.gene70629.t1 AT3G47500 63.235 68 24 1 51 118 101 167 4.97e-24 102
MS.gene70629.t1 AT5G62430 46.087 115 48 3 50 164 44 144 6.42e-24 100
MS.gene70629.t1 AT5G39660 63.768 69 24 1 50 118 128 195 9.86e-24 101
MS.gene70629.t1 AT5G39660 63.768 69 24 1 50 118 128 195 9.86e-24 101
MS.gene70629.t1 AT5G39660 63.768 69 24 1 50 118 128 195 9.86e-24 101
MS.gene70629.t1 AT1G69570 64.516 62 21 1 53 114 125 185 3.92e-23 99.4
MS.gene70629.t1 AT1G29160 60.000 70 26 1 45 114 48 115 4.59e-23 94.7
MS.gene70629.t1 AT2G34140 47.253 91 36 1 24 114 33 111 1.47e-22 93.2
MS.gene70629.t1 AT4G21040 57.971 69 29 0 63 131 27 95 4.21e-22 93.6
MS.gene70629.t1 AT1G26790 51.852 81 38 1 52 132 103 182 8.16e-22 95.1
MS.gene70629.t1 AT4G21080 56.000 75 30 1 63 134 27 101 4.35e-21 91.3
MS.gene70629.t1 AT4G21030 55.556 63 25 1 50 112 13 72 6.84e-15 72.8

Find 85 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTGTTCTCCATGAAATT+AGG 0.146876 3.1:+63900403 None:intergenic
AGTAAGTTAGAAGGCATAAT+TGG 0.168612 3.1:-63900328 MS.gene70629:CDS
TCTCACCTAAGTAACTTATT+TGG 0.188613 3.1:-63900448 MS.gene70629:CDS
TAGCAATGGTGCTTATTTAA+TGG 0.193039 3.1:-63900146 MS.gene70629:CDS
AAAGAAAGCTGAAGATCTTT+AGG 0.209545 3.1:+63900487 None:intergenic
CATTCAAGTGACAATAGTTT+AGG 0.231938 3.1:+63900046 None:intergenic
TTTGGTGGAATGTCATTTAA+TGG 0.272373 3.1:-63900178 MS.gene70629:CDS
ACTTGTTCTCCATGAAATTA+GGG 0.276978 3.1:+63900404 None:intergenic
GATATGATGAATGGACAAAA+TGG 0.284919 3.1:-63900226 MS.gene70629:CDS
TTTGGAGCTAATGGAGCATT+AGG 0.302981 3.1:-63900430 MS.gene70629:CDS
TGATCATATGAATATGAATA+TGG 0.304551 3.1:-63900266 MS.gene70629:CDS
AGTAACTTATTTGGAGCTAA+TGG 0.308114 3.1:-63900439 MS.gene70629:CDS
GTTCCTAAGTGTTCCTCCTT+TGG 0.313562 3.1:+63900630 None:intergenic
TTCTCTTCACGTCTGCAATA+TGG 0.315298 3.1:-63901368 MS.gene70629:CDS
ATTCAAGTGACAATAGTTTA+GGG 0.332848 3.1:+63900047 None:intergenic
AAGAAAGCTGAAGATCTTTA+GGG 0.336634 3.1:+63900488 None:intergenic
ATGAATATGGGTGTTGGGAT+TGG 0.368536 3.1:-63900253 MS.gene70629:CDS
GCATAATTGGGAGTAGTTCT+AGG 0.373441 3.1:-63900315 MS.gene70629:CDS
CTTTCCATCATGAAGTCAAT+AGG 0.377139 3.1:+63900349 None:intergenic
GTTGTTGTAATAGCAGAATT+TGG 0.387536 3.1:+63900705 None:intergenic
TTTCTACAGCCTCCACCAAC+AGG 0.392353 3.1:+63900604 None:intergenic
AAAGGTCAGTCATTTGGATA+TGG 0.392934 3.1:-63899992 MS.gene70629:CDS
GCAAGACTTGTAGAAGGTAT+TGG 0.393470 3.1:-63900654 MS.gene70629:CDS
GCTGGAAAAGGTCAGTCATT+TGG 0.395618 3.1:-63899998 MS.gene70629:CDS
ATTAGGAAACCCTAATTTCA+TGG 0.397565 3.1:-63900413 MS.gene70629:CDS
AGTGACAATAGTTTAGGGTT+TGG 0.405871 3.1:+63900052 None:intergenic
TCCTCATCATTAGCATCATA+TGG 0.425855 3.1:+63900100 None:intergenic
GTAAGTTAGAAGGCATAATT+GGG 0.426365 3.1:-63900327 MS.gene70629:CDS
TAGCTCCAAATAAGTTACTT+AGG 0.442973 3.1:+63900443 None:intergenic
AGGTGAGAGAATTGCACATC+AGG 0.445358 3.1:+63900463 None:intergenic
ATCTGCAGATCATTGGTTGC+AGG 0.446436 3.1:-63901341 MS.gene70629:intron
TCTTAGCCTCCTCTCTATCA+TGG 0.458753 3.1:+63900777 None:intergenic
GATCAAGGTTGCTCTGATGC+TGG 0.462649 3.1:-63900016 MS.gene70629:CDS
ATGATGGAAAGTAAGTTAGA+AGG 0.467778 3.1:-63900337 MS.gene70629:CDS
TGGAATCATCTGCAGATCAT+TGG 0.469488 3.1:-63901348 MS.gene70629:CDS
GAGCTTAGCCGTTGATCAAA+GGG 0.477519 3.1:+63899924 None:intergenic
AGTGGTATGATGAATGGTTA+TGG 0.480178 3.1:-63899962 MS.gene70629:CDS
AATATGGGTGTTGGGATTGG+AGG 0.481246 3.1:-63900250 MS.gene70629:CDS
GGTTGCTCTGATGCTGGAAA+AGG 0.482324 3.1:-63900010 MS.gene70629:CDS
GGCACAATTCACGATGAGTC+AGG 0.484101 3.1:-63900856 MS.gene70629:CDS
GATTCATCTTCACCAATGTC+TGG 0.489933 3.1:-63900829 MS.gene70629:CDS
GAGAACAAGTATAGCAATGT+TGG 0.493849 3.1:-63900391 MS.gene70629:CDS
CTCCTCTCTATCATGGATGA+TGG 0.495201 3.1:+63900784 None:intergenic
ACTTCTGCAAGACTTGTAGA+AGG 0.495701 3.1:-63900660 MS.gene70629:CDS
AGAGCTTAGCCGTTGATCAA+AGG 0.500555 3.1:+63899923 None:intergenic
CTAAACTATTGTCACTTGAA+TGG 0.500804 3.1:-63900045 MS.gene70629:CDS
CTTGAATGGCAGCAAGATCA+AGG 0.502791 3.1:-63900031 MS.gene70629:CDS
ATGAATATGAATATGGGTGT+TGG 0.503188 3.1:-63900259 MS.gene70629:CDS
AGTCATTTGGATATGGATCA+TGG 0.505387 3.1:-63899985 MS.gene70629:CDS
GTGACATGCTAACATGTTCA+AGG 0.508689 3.1:-63900807 MS.gene70629:CDS
TGAATATGAATATGGGTGTT+GGG 0.514370 3.1:-63900258 MS.gene70629:CDS
ATCATGAAGTCAATAGGCCT+AGG 0.516098 3.1:+63900355 None:intergenic
CTTAGGAACATCCCTGTTGG+TGG 0.550577 3.1:-63900616 MS.gene70629:CDS
GGTGGAATGTCATTTAATGG+AGG 0.555147 3.1:-63900175 MS.gene70629:CDS
CAAGTCTTGCAGAAGTACCT+TGG 0.558008 3.1:+63900667 None:intergenic
AGGAACATCCCTGTTGGTGG+AGG 0.558859 3.1:-63900613 MS.gene70629:CDS
ACAACAAACCCTTTGATCAA+CGG 0.565654 3.1:-63899932 MS.gene70629:CDS
ATATGATGAATGGACAAAAT+GGG 0.566744 3.1:-63900225 MS.gene70629:CDS
ATTGGAGGAGATATGATGAA+TGG 0.570060 3.1:-63900235 MS.gene70629:CDS
ACCTATCCCTAAAATGTCCA+AGG 0.579764 3.1:-63900744 MS.gene70629:CDS
GATCATATGAATATGAATAT+GGG 0.580380 3.1:-63900265 MS.gene70629:CDS
TAGGCCTATTGACTTCATGA+TGG 0.581168 3.1:-63900353 MS.gene70629:CDS
TCATGGAGTGGTATGATGAA+TGG 0.582721 3.1:-63899968 MS.gene70629:CDS
TGTAGAAGGTATTGGACCAA+AGG 0.594254 3.1:-63900646 MS.gene70629:CDS
AATTCACGATGAGTCAGGAA+TGG 0.596611 3.1:-63900851 MS.gene70629:CDS
GGACCAAAGGAGGAACACTT+AGG 0.599656 3.1:-63900633 MS.gene70629:CDS
AATGCATGATGAAAATTCTG+AGG 0.599697 3.1:+63900199 None:intergenic
AATGGAGGAAACAATAGCAA+TGG 0.607650 3.1:-63900160 MS.gene70629:CDS
AGGAAGGTACATGATGTGGT+TGG 0.607867 3.1:+63900521 None:intergenic
TCATGAAGTCAATAGGCCTA+GGG 0.612063 3.1:+63900356 None:intergenic
GGCCATCATCCATGATAGAG+AGG 0.614387 3.1:-63900786 MS.gene70629:CDS
GGTGAGAGAATTGCACATCA+GGG 0.615522 3.1:+63900464 None:intergenic
TTGGCATGCTTGAAAACCCT+AGG 0.618350 3.1:-63900372 MS.gene70629:CDS
AGAAGGTATTGGACCAAAGG+AGG 0.622045 3.1:-63900643 MS.gene70629:CDS
GTTAGCATGTCACCAGACAT+TGG 0.624948 3.1:+63900817 None:intergenic
TTCTACAGCCTCCACCAACA+GGG 0.626747 3.1:+63900605 None:intergenic
TGGTAGGAAGGTACATGATG+TGG 0.632743 3.1:+63900517 None:intergenic
ACACTTAGGAACATCCCTGT+TGG 0.646210 3.1:-63900619 MS.gene70629:CDS
TTTGGATATGGATCATGGAG+TGG 0.646639 3.1:-63899980 MS.gene70629:CDS
GTTGATCAAAGGGTTTGTTG+TGG 0.647747 3.1:+63899934 None:intergenic
TTTAGGGATAGGTCATGTGG+TGG 0.663306 3.1:+63900754 None:intergenic
ACTACAGTCTCTCTCAGCCA+AGG 0.663924 3.1:-63900684 MS.gene70629:CDS
GTGTGAGTTGAATCACACCT+TGG 0.665322 3.1:+63900727 None:intergenic
TCCATATGATGCTAATGATG+AGG 0.665364 3.1:-63900101 MS.gene70629:CDS
CATCATCCATGATAGAGAGG+AGG 0.679330 3.1:-63900783 MS.gene70629:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGGAATTTTGATAATTATTT+TGG - chr3.1:63901012-63901031 MS.gene70629:intron 15.0%
!! AACATGATAAACAAAATGAA+AGG + chr3.1:63900023-63900042 None:intergenic 20.0%
!! AAGCTAAGAAAAACAAAATT+AGG - chr3.1:63900277-63900296 MS.gene70629:CDS 20.0%
!! ACATGCATTTATCAAATTAA+TGG - chr3.1:63900057-63900076 MS.gene70629:CDS 20.0%
!! AGCTAAGAAAAACAAAATTA+GGG - chr3.1:63900278-63900297 MS.gene70629:CDS 20.0%
!! GATCATATGAATATGAATAT+GGG - chr3.1:63901042-63901061 MS.gene70629:intron 20.0%
!! TAAACAAAATGAAAGGAAAA+TGG + chr3.1:63900016-63900035 None:intergenic 20.0%
!! TGATCATATGAATATGAATA+TGG - chr3.1:63901041-63901060 MS.gene70629:intron 20.0%
!!! TAAGTGATCATTTGATTTTT+TGG + chr3.1:63900746-63900765 None:intergenic 20.0%
!!! TCTTTTATACAAAATTGTCA+GGG - chr3.1:63900430-63900449 MS.gene70629:CDS 20.0%
!!! TTCTTTTATACAAAATTGTC+AGG - chr3.1:63900429-63900448 MS.gene70629:CDS 20.0%
! AAATTAATGGTGTAGTAGTT+TGG - chr3.1:63900070-63900089 MS.gene70629:CDS 25.0%
! ATATGATGAATGGACAAAAT+GGG - chr3.1:63901082-63901101 MS.gene70629:intron 25.0%
! ATTCAAGTGACAATAGTTTA+GGG + chr3.1:63901263-63901282 None:intergenic 25.0%
!! GAAAAGAGAATTTTATGCTT+AGG - chr3.1:63900092-63900111 MS.gene70629:CDS 25.0%
!!! AATGTGTTAATTTGTCTTGT+TGG + chr3.1:63900369-63900388 None:intergenic 25.0%
!!! TGGAATTGGATTATTTTACA+TGG + chr3.1:63900349-63900368 None:intergenic 25.0%
!!! TTAATTTGTCTTGTTGGAAT+TGG + chr3.1:63900363-63900382 None:intergenic 25.0%
!!! TTCACTTTTAATCATGAGAT+CGG + chr3.1:63900232-63900251 None:intergenic 25.0%
AAAATGGTATACATTGTGCA+TGG + chr3.1:63900000-63900019 None:intergenic 30.0%
AAAGAAAGCTGAAGATCTTT+AGG + chr3.1:63900823-63900842 None:intergenic 30.0%
AAGAAAGCTGAAGATCTTTA+GGG + chr3.1:63900822-63900841 None:intergenic 30.0%
AATGCATGATGAAAATTCTG+AGG + chr3.1:63901111-63901130 None:intergenic 30.0%
ACTTGTTCTCCATGAAATTA+GGG + chr3.1:63900906-63900925 None:intergenic 30.0%
ATGAATATGAATATGGGTGT+TGG - chr3.1:63901048-63901067 MS.gene70629:intron 30.0%
ATTAGGAAACCCTAATTTCA+TGG - chr3.1:63900894-63900913 MS.gene70629:intron 30.0%
CATGATCATTTGAATTGCTA+TGG - chr3.1:63900167-63900186 MS.gene70629:CDS 30.0%
CATTCAAGTGACAATAGTTT+AGG + chr3.1:63901264-63901283 None:intergenic 30.0%
GATATGATGAATGGACAAAA+TGG - chr3.1:63901081-63901100 MS.gene70629:intron 30.0%
GATCTCATGATTAAAAGTGA+AGG - chr3.1:63900231-63900250 MS.gene70629:CDS 30.0%
GTTGTTGTAATAGCAGAATT+TGG + chr3.1:63900605-63900624 None:intergenic 30.0%
TACTTGTTCTCCATGAAATT+AGG + chr3.1:63900907-63900926 None:intergenic 30.0%
TAGCAATGGTGCTTATTTAA+TGG - chr3.1:63901161-63901180 MS.gene70629:intron 30.0%
TAGCTCCAAATAAGTTACTT+AGG + chr3.1:63900867-63900886 None:intergenic 30.0%
TCTCACCTAAGTAACTTATT+TGG - chr3.1:63900859-63900878 MS.gene70629:CDS 30.0%
TGAATATGAATATGGGTGTT+GGG - chr3.1:63901049-63901068 MS.gene70629:intron 30.0%
! AATTTTCATCATGCATTTGG+TGG - chr3.1:63901114-63901133 MS.gene70629:intron 30.0%
! AGTAACTTATTTGGAGCTAA+TGG - chr3.1:63900868-63900887 MS.gene70629:intron 30.0%
! AGTAAGTTAGAAGGCATAAT+TGG - chr3.1:63900979-63900998 MS.gene70629:intron 30.0%
! ATGATGGAAAGTAAGTTAGA+AGG - chr3.1:63900970-63900989 MS.gene70629:intron 30.0%
! CAGAATTTTCATCATGCATT+TGG - chr3.1:63901111-63901130 MS.gene70629:intron 30.0%
! CTAAACTATTGTCACTTGAA+TGG - chr3.1:63901262-63901281 MS.gene70629:intron 30.0%
! GTAAGTTAGAAGGCATAATT+GGG - chr3.1:63900980-63900999 MS.gene70629:intron 30.0%
! TTTGGTGGAATGTCATTTAA+TGG - chr3.1:63901129-63901148 MS.gene70629:intron 30.0%
AAAGGTCAGTCATTTGGATA+TGG - chr3.1:63901315-63901334 MS.gene70629:intron 35.0%
AATGGAGGAAACAATAGCAA+TGG - chr3.1:63901147-63901166 MS.gene70629:intron 35.0%
ACAACAAACCCTTTGATCAA+CGG - chr3.1:63901375-63901394 MS.gene70629:CDS 35.0%
AGTCATTTGGATATGGATCA+TGG - chr3.1:63901322-63901341 MS.gene70629:intron 35.0%
AGTGGTATGATGAATGGTTA+TGG - chr3.1:63901345-63901364 MS.gene70629:CDS 35.0%
ATTGGAGGAGATATGATGAA+TGG - chr3.1:63901072-63901091 MS.gene70629:intron 35.0%
CTTTCCATCATGAAGTCAAT+AGG + chr3.1:63900961-63900980 None:intergenic 35.0%
GAGAACAAGTATAGCAATGT+TGG - chr3.1:63900916-63900935 MS.gene70629:intron 35.0%
TCCATATGATGCTAATGATG+AGG - chr3.1:63901206-63901225 MS.gene70629:intron 35.0%
TCCTCATCATTAGCATCATA+TGG + chr3.1:63901210-63901229 None:intergenic 35.0%
! AATCACACCTTGGACATTTT+AGG + chr3.1:63900573-63900592 None:intergenic 35.0%
! AGTGACAATAGTTTAGGGTT+TGG + chr3.1:63901258-63901277 None:intergenic 35.0%
! ATCACACCTTGGACATTTTA+GGG + chr3.1:63900572-63900591 None:intergenic 35.0%
!!! ATCTTTAGGGTTTTGATGGT+AGG + chr3.1:63900809-63900828 None:intergenic 35.0%
!!! GAAGATCTTTAGGGTTTTGA+TGG + chr3.1:63900813-63900832 None:intergenic 35.0%
AATTCACGATGAGTCAGGAA+TGG - chr3.1:63900456-63900475 MS.gene70629:CDS 40.0%
ACCTATCCCTAAAATGTCCA+AGG - chr3.1:63900563-63900582 MS.gene70629:CDS 40.0%
ACTTCTGCAAGACTTGTAGA+AGG - chr3.1:63900647-63900666 MS.gene70629:CDS 40.0%
ATCATGAAGTCAATAGGCCT+AGG + chr3.1:63900955-63900974 None:intergenic 40.0%
GATTCATCTTCACCAATGTC+TGG - chr3.1:63900478-63900497 MS.gene70629:CDS 40.0%
GCATAATTGGGAGTAGTTCT+AGG - chr3.1:63900992-63901011 MS.gene70629:intron 40.0%
GTGACATGCTAACATGTTCA+AGG - chr3.1:63900500-63900519 MS.gene70629:CDS 40.0%
TCATGAAGTCAATAGGCCTA+GGG + chr3.1:63900954-63900973 None:intergenic 40.0%
TCATGGAGTGGTATGATGAA+TGG - chr3.1:63901339-63901358 MS.gene70629:intron 40.0%
TGGAATCATCTGCAGATCAT+TGG - chr3.1:63899959-63899978 MS.gene70629:CDS 40.0%
TTCTCTTCACGTCTGCAATA+TGG - chr3.1:63899939-63899958 MS.gene70629:CDS 40.0%
TTTGGATATGGATCATGGAG+TGG - chr3.1:63901327-63901346 MS.gene70629:intron 40.0%
! GCAAGACTTGTAGAAGGTAT+TGG - chr3.1:63900653-63900672 MS.gene70629:CDS 40.0%
! GGTGGAATGTCATTTAATGG+AGG - chr3.1:63901132-63901151 MS.gene70629:intron 40.0%
! TTTGGAGCTAATGGAGCATT+AGG - chr3.1:63900877-63900896 MS.gene70629:intron 40.0%
!! ACCTTGGACATTTTAGGGAT+AGG + chr3.1:63900567-63900586 None:intergenic 40.0%
!! ATGAATATGGGTGTTGGGAT+TGG - chr3.1:63901054-63901073 MS.gene70629:intron 40.0%
!! CATTTTAGGGATAGGTCATG+TGG + chr3.1:63900559-63900578 None:intergenic 40.0%
!! GTTGATCAAAGGGTTTGTTG+TGG + chr3.1:63901376-63901395 None:intergenic 40.0%
!! TAGGCCTATTGACTTCATGA+TGG - chr3.1:63900954-63900973 MS.gene70629:intron 40.0%
!! TGTAGAAGGTATTGGACCAA+AGG - chr3.1:63900661-63900680 MS.gene70629:CDS 40.0%
!! TTAGGGTTTTGATGGTAGGA+AGG + chr3.1:63900805-63900824 None:intergenic 40.0%
ACACTTAGGAACATCCCTGT+TGG - chr3.1:63900688-63900707 MS.gene70629:CDS 45.0%
AGGTGAGAGAATTGCACATC+AGG + chr3.1:63900847-63900866 None:intergenic 45.0%
CATCATCCATGATAGAGAGG+AGG - chr3.1:63900524-63900543 MS.gene70629:CDS 45.0%
CTCCTCTCTATCATGGATGA+TGG + chr3.1:63900526-63900545 None:intergenic 45.0%
CTTGAATGGCAGCAAGATCA+AGG - chr3.1:63901276-63901295 MS.gene70629:intron 45.0%
GCTGGAAAAGGTCAGTCATT+TGG - chr3.1:63901309-63901328 MS.gene70629:intron 45.0%
GGTGAGAGAATTGCACATCA+GGG + chr3.1:63900846-63900865 None:intergenic 45.0%
GTTAGCATGTCACCAGACAT+TGG + chr3.1:63900493-63900512 None:intergenic 45.0%
GTTCCTAAGTGTTCCTCCTT+TGG + chr3.1:63900680-63900699 None:intergenic 45.0%
TCTTAGCCTCCTCTCTATCA+TGG + chr3.1:63900533-63900552 None:intergenic 45.0%
TTGGCATGCTTGAAAACCCT+AGG - chr3.1:63900935-63900954 MS.gene70629:intron 45.0%
TTTAGGGATAGGTCATGTGG+TGG + chr3.1:63900556-63900575 None:intergenic 45.0%
! AGGAAGGTACATGATGTGGT+TGG + chr3.1:63900789-63900808 None:intergenic 45.0%
! ATCTGCAGATCATTGGTTGC+AGG - chr3.1:63899966-63899985 MS.gene70629:CDS 45.0%
! GTGTGAGTTGAATCACACCT+TGG + chr3.1:63900583-63900602 None:intergenic 45.0%
! TGGTAGGAAGGTACATGATG+TGG + chr3.1:63900793-63900812 None:intergenic 45.0%
!! AATATGGGTGTTGGGATTGG+AGG - chr3.1:63901057-63901076 MS.gene70629:intron 45.0%
!! AGAAGGTATTGGACCAAAGG+AGG - chr3.1:63900664-63900683 MS.gene70629:CDS 45.0%
!! CAAGTCTTGCAGAAGTACCT+TGG + chr3.1:63900643-63900662 None:intergenic 45.0%
ACTACAGTCTCTCTCAGCCA+AGG - chr3.1:63900623-63900642 MS.gene70629:CDS 50.0%
CTTAGGAACATCCCTGTTGG+TGG - chr3.1:63900691-63900710 MS.gene70629:CDS 50.0%
GATCAAGGTTGCTCTGATGC+TGG - chr3.1:63901291-63901310 MS.gene70629:intron 50.0%
GGACCAAAGGAGGAACACTT+AGG - chr3.1:63900674-63900693 MS.gene70629:CDS 50.0%
GGCACAATTCACGATGAGTC+AGG - chr3.1:63900451-63900470 MS.gene70629:CDS 50.0%
GGCCATCATCCATGATAGAG+AGG - chr3.1:63900521-63900540 MS.gene70629:CDS 50.0%
GGTTGCTCTGATGCTGGAAA+AGG - chr3.1:63901297-63901316 MS.gene70629:intron 50.0%
TTCTACAGCCTCCACCAACA+GGG + chr3.1:63900705-63900724 None:intergenic 50.0%
TTTCTACAGCCTCCACCAAC+AGG + chr3.1:63900706-63900725 None:intergenic 50.0%
! AGGAACATCCCTGTTGGTGG+AGG - chr3.1:63900694-63900713 MS.gene70629:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 63899928 63901401 63899928 ID=MS.gene70629
chr3.1 mRNA 63899928 63901401 63899928 ID=MS.gene70629.t1;Parent=MS.gene70629
chr3.1 exon 63901342 63901401 63901342 ID=MS.gene70629.t1.exon1;Parent=MS.gene70629.t1
chr3.1 CDS 63901342 63901401 63901342 ID=cds.MS.gene70629.t1;Parent=MS.gene70629.t1
chr3.1 exon 63899928 63900878 63899928 ID=MS.gene70629.t1.exon2;Parent=MS.gene70629.t1
chr3.1 CDS 63899928 63900878 63899928 ID=cds.MS.gene70629.t1;Parent=MS.gene70629.t1
Gene Sequence

>MS.gene70629

ATGGGTTTATCTTCTCTTCACGTCTGCAATATGGAATCATCTGCAGATCATTGGTTGCAGGTATATATACCATGCACAATGTATACCATTTTCCTTTCATTTTGTTTATCATGTTCACATATCACTAACACATGCATTTATCAAATTAATGGTGTAGTAGTTTGGAAAAGAGAATTTTATGCTTAGGTTTATGCTTTGTAAATAACTATGTTTTGTACATTAATTAGCTTAATTAGATTCATGATCATTTGAATTGCTATGGAATTTAATTAAAAGTGCTTTGTATAGTATATGTTGAACTCCGATCTCATGATTAAAAGTGAAGGAGAACGAAAAATAAAAGAAGAGAAAGCTAAGAAAAACAAAATTAGGGAGAAGCTAGCTAGAAAGAGAACAAAAAGAATGAAAAAGAAAAAGACCATGTAAAATAATCCAATTCCAACAAGACAAATTAACACATTTTTCACTTTTACTTTTATCATAAATATATTAACTTCTAGTTTCTTTTATACAAAATTGTCAGGGCACAATTCACGATGAGTCAGGAATGGATTCATCTTCACCAATGTCTGGTGACATGCTAACATGTTCAAGGCCATCATCCATGATAGAGAGGAGGCTAAGACCACCACATGACCTATCCCTAAAATGTCCAAGGTGTGATTCAACTCACACCAAATTCTGCTATTACAACAACTACAGTCTCTCTCAGCCAAGGTACTTCTGCAAGACTTGTAGAAGGTATTGGACCAAAGGAGGAACACTTAGGAACATCCCTGTTGGTGGAGGCTGTAGAAAAAACAAAAAAGTTTCTTCCAAAAAATCAAATGATCACTTAGCTAATAATAATATTCAAAACCAACCACATCATGTACCTTCCTACCATCAAAACCCTAAAGATCTTCAGCTTTCTTTCCCTGATGTGCAATTCTCTCACCTAAGTAACTTATTTGGAGCTAATGGAGCATTAGGAAACCCTAATTTCATGGAGAACAAGTATAGCAATGTTGGCATGCTTGAAAACCCTAGGCCTATTGACTTCATGATGGAAAGTAAGTTAGAAGGCATAATTGGGAGTAGTTCTAGGAATTTTGATAATTATTTTGGAAATAGTGATCATATGAATATGAATATGGGTGTTGGGATTGGAGGAGATATGATGAATGGACAAAATGGGTTGCCTCAGAATTTTCATCATGCATTTGGTGGAATGTCATTTAATGGAGGAAACAATAGCAATGGTGCTTATTTAATGGATTCTTGTCAAAGACTTATGCTTCCATATGATGCTAATGATGAGGATCATAATGCTTCAATTGATGTGAAGCCAAACCCTAAACTATTGTCACTTGAATGGCAGCAAGATCAAGGTTGCTCTGATGCTGGAAAAGGTCAGTCATTTGGATATGGATCATGGAGTGGTATGATGAATGGTTATGGATCTTCCACAACAAACCCTTTGATCAACGGCTAA
Protein sequence

>MS.gene70629.t1

MGLSSLHVCNMESSADHWLQGTIHDESGMDSSSPMSGDMLTCSRPSSMIERRLRPPHDLSLKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKSNDHLANNNIQNQPHHVPSYHQNPKDLQLSFPDVQFSHLSNLFGANGALGNPNFMENKYSNVGMLENPRPIDFMMESKLEGIIGSSSRNFDNYFGNSDHMNMNMGVGIGGDMMNGQNGLPQNFHHAFGGMSFNGGNNSNGAYLMDSCQRLMLPYDANDEDHNASIDVKPNPKLLSLEWQQDQGCSDAGKGQSFGYGSWSGMMNGYGSSTTNPLING