AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70801

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70801.t1 MTR_1g081580 91.398 372 30 1 1 372 1 370 0.0 623
MS.gene70801.t1 MTR_7g114600 41.584 404 151 13 49 377 45 438 6.76e-83 260
MS.gene70801.t1 MTR_1g081560 33.962 371 188 13 18 373 44 372 1.85e-46 163
MS.gene70801.t1 MTR_1g081570 50.355 141 26 3 50 189 2 99 4.14e-33 119
MS.gene70801.t1 MTR_3g070120 37.778 135 74 3 97 231 153 277 1.16e-16 81.3
MS.gene70801.t1 MTR_2g010790 35.577 104 57 3 92 195 199 292 9.61e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70801.t1 AT5G28040 42.553 376 168 14 43 378 60 427 6.88e-72 231
MS.gene70801.t1 AT5G28040 42.553 376 168 14 43 378 60 427 6.88e-72 231
MS.gene70801.t1 AT3G04930 43.213 361 155 13 60 373 94 451 5.19e-58 196
MS.gene70801.t1 AT3G04930 42.545 275 124 10 60 303 94 365 2.66e-42 153
MS.gene70801.t1 AT4G00390 39.103 156 78 4 50 204 115 254 2.04e-22 97.8
MS.gene70801.t1 AT1G61730 36.025 161 93 3 35 194 97 248 1.02e-21 95.9
MS.gene70801.t1 AT4G25210 42.991 107 56 2 92 194 136 241 9.20e-21 93.2
MS.gene70801.t1 AT4G01260 38.365 159 71 7 61 194 51 207 1.96e-18 85.9
MS.gene70801.t1 AT4G00610 31.690 142 88 2 56 197 108 240 1.83e-17 83.2
MS.gene70801.t1 AT1G44810 38.889 108 60 2 92 199 117 218 1.49e-16 80.1
MS.gene70801.t1 AT1G11510 34.177 158 77 2 97 254 109 239 1.16e-15 77.8
MS.gene70801.t1 AT1G11510 34.177 158 77 2 97 254 138 268 1.29e-15 77.8
MS.gene70801.t1 AT5G14280 39.130 92 56 0 99 190 63 154 4.11e-15 75.9
MS.gene70801.t1 AT4G00238 36.036 111 63 2 98 206 141 245 1.01e-14 75.1
MS.gene70801.t1 AT2G25650 36.458 96 61 0 96 191 64 159 1.03e-14 75.5
MS.gene70801.t1 AT4G00250 37.037 108 62 1 98 205 116 217 1.11e-14 74.7
MS.gene70801.t1 AT2G01370 34.513 113 69 3 90 200 72 181 2.61e-14 72.8
MS.gene70801.t1 AT4G00270 35.417 96 62 0 96 191 63 158 9.99e-14 71.6
MS.gene70801.t1 AT2G36340 30.108 93 65 0 101 193 63 155 1.71e-11 65.9
MS.gene70801.t1 AT1G66420 32.203 118 66 3 97 207 87 197 3.72e-11 63.9

Find 108 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGTCAAATGAGAAGAATT+AGG 0.169998 1.2:+61016698 None:intergenic
CCTTACCAGAATCAAATTTC+TGG 0.175110 1.2:+61016858 None:intergenic
TTGAAATTTCACACAAAATC+TGG 0.187804 1.2:-61016799 MS.gene70801:CDS
TAGGGTTAGGGTTAGGGTTT+GGG 0.208114 1.2:+61016717 None:intergenic
TCTTCCATTGGTTCCCGTTT+TGG 0.241053 1.2:+61017106 None:intergenic
AAGAATTAGGGTTAGGGTTA+GGG 0.289966 1.2:+61016711 None:intergenic
TTCATCAACATTGCTGCTAT+TGG 0.290264 1.2:+61016574 None:intergenic
ACCATGAGTGGGAGTCCTTT+TGG 0.291912 1.2:-61016446 MS.gene70801:CDS
GAAGAATTAGGGTTAGGGTT+AGG 0.292949 1.2:+61016710 None:intergenic
CTTATCAACAAGCTGGTTCT+TGG 0.314691 1.2:+61016916 None:intergenic
CAGTCAAATGAGAAGAATTA+GGG 0.345673 1.2:+61016699 None:intergenic
GCTCTCCAGAAATTTGATTC+TGG 0.345969 1.2:-61016863 MS.gene70801:CDS
TTAGGGTTAGGGTTAGGGTT+TGG 0.348108 1.2:+61016716 None:intergenic
AAATGAGAAGAATTAGGGTT+AGG 0.361264 1.2:+61016704 None:intergenic
TGATAGTGGTGGTCGGAGTT+TGG 0.362812 1.2:+61017238 None:intergenic
GTGGAGGAAGCAGCAGATCT+TGG 0.365300 1.2:-61016324 MS.gene70801:CDS
ATTGCTGCTATTGGTATTAC+CGG 0.367170 1.2:+61016583 None:intergenic
GGAAGAGGGTTTGGAGCTGG+AGG 0.381688 1.2:-61016416 MS.gene70801:CDS
GCTGGAGCTGGAGCCGGAGC+TGG 0.383081 1.2:-61016224 MS.gene70801:CDS
TCGTCTTATCATAACGATAC+TGG 0.386458 1.2:-61016983 MS.gene70801:CDS
GGAGGTGGGGACAGCGGCGG+TGG 0.386670 1.2:+61017189 None:intergenic
ATATGATATTATCTATTGAT+TGG 0.394784 1.2:+61016184 None:intergenic
TGAAATTTCACACAAAATCT+GGG 0.411047 1.2:-61016798 MS.gene70801:CDS
CGGCTCCCCTGAACCAAAAC+GGG 0.417017 1.2:-61017119 MS.gene70801:CDS
GCCGAAGGTTTCATCATGGC+TGG 0.421908 1.2:+61017315 None:intergenic
GGAGCCGGAGCTGGAGGTAG+TGG 0.425950 1.2:-61016215 MS.gene70801:CDS
ACCAGCTTGTTGATAAGCTT+CGG 0.428179 1.2:-61016910 MS.gene70801:CDS
ATTTCCTCCTCTTCATCAAC+AGG 0.428859 1.2:+61016743 None:intergenic
TTTGGGGAGGGGAGAAAAGG+CGG 0.431266 1.2:-61016357 MS.gene70801:CDS
AATGAGAAGAATTAGGGTTA+GGG 0.441702 1.2:+61016705 None:intergenic
GAATTTGGGGAGGGGAGAAA+AGG 0.442864 1.2:-61016360 MS.gene70801:CDS
TCGCTGGTCTTCTCTTCCAT+TGG 0.443474 1.2:+61017094 None:intergenic
CCAGAAATTTGATTCTGGTA+AGG 0.445820 1.2:-61016858 MS.gene70801:CDS
TTTGTGTGAAATTTCAAAAG+TGG 0.448452 1.2:+61016805 None:intergenic
GAATGTTGACGGAGATTGTT+CGG 0.450712 1.2:+61017213 None:intergenic
CTGTTTGACACCGGTGTTGA+AGG 0.458464 1.2:-61016483 MS.gene70801:CDS
CTGATGCGGAGGCGTGTGGT+AGG 0.462324 1.2:+61017155 None:intergenic
AACGGTAATTCAACGCCAAT+TGG 0.467910 1.2:-61016770 MS.gene70801:CDS
TCATCAACAGGTACACCAAT+TGG 0.471428 1.2:+61016755 None:intergenic
TGGTTCAGGGGAGCCGTCGA+TGG 0.476050 1.2:+61017126 None:intergenic
GATGAAACCTTCGGCGTCGA+AGG 0.476310 1.2:-61017307 MS.gene70801:CDS
GAGATTGTTCGGTTTGATAG+TGG 0.479733 1.2:+61017224 None:intergenic
TTGAGATCGAATGCTGGAGC+TGG 0.483868 1.2:-61016236 MS.gene70801:CDS
ATTTCCACTACCTCCAGCTC+CGG 0.484287 1.2:+61016211 None:intergenic
TCGAATGCTGGAGCTGGAGC+CGG 0.484287 1.2:-61016230 MS.gene70801:CDS
TAGGGCTAAGATGACGGAGG+TGG 0.485162 1.2:+61017174 None:intergenic
AAAAGGCGGTGGATGAAAAG+TGG 0.498168 1.2:-61016343 MS.gene70801:CDS
CCCAGCCATGATGAAACCTT+CGG 0.498475 1.2:-61017316 MS.gene70801:CDS
ACGGCTCCCCTGAACCAAAA+CGG 0.499060 1.2:-61017120 MS.gene70801:CDS
CGCAATCTCGCAAGAGATCG+CGG 0.499446 1.2:-61016664 MS.gene70801:CDS
CACAAAATCTGGGGCAGCAA+CGG 0.505174 1.2:-61016788 MS.gene70801:CDS
GCGGCGGTGGCGAATGTTGA+CGG 0.506105 1.2:+61017202 None:intergenic
GAGATCGCGGGCAGCTGAGG+AGG 0.510050 1.2:-61016651 MS.gene70801:CDS
GAAGCGGTTGGAGCTGGTGC+AGG 0.515736 1.2:-61016285 MS.gene70801:CDS
CCGAAGGTTTCATCATGGCT+GGG 0.523112 1.2:+61017316 None:intergenic
AGGGCTAAGATGACGGAGGT+GGG 0.524316 1.2:+61017175 None:intergenic
CAAGAGATCGCGGGCAGCTG+AGG 0.524761 1.2:-61016654 MS.gene70801:CDS
GTATTCGAAGCGGTTGGAGC+TGG 0.525755 1.2:-61016291 MS.gene70801:CDS
TCAATGAATACTGTGCCACT+TGG 0.530128 1.2:-61016389 MS.gene70801:CDS
GTCTTCACCTTCGACGCCGA+AGG 0.533544 1.2:+61017300 None:intergenic
TTCGGTTTGATAGTGGTGGT+CGG 0.533600 1.2:+61017231 None:intergenic
GAAGCAGCAGATCTTGGAGC+TGG 0.536486 1.2:-61016318 MS.gene70801:CDS
CAATGAATACTGTGCCACTT+GGG 0.540348 1.2:-61016388 MS.gene70801:CDS
ACCGTCTCTTCAATCAATCC+AGG 0.540585 1.2:+61016512 None:intergenic
GGGGAGGGGAGAAAAGGCGG+TGG 0.544807 1.2:-61016354 MS.gene70801:CDS
AGTGGTGGTCGGAGTTTGGT+TGG 0.545511 1.2:+61017242 None:intergenic
GCAATCTCGCAAGAGATCGC+GGG 0.549804 1.2:-61016663 MS.gene70801:CDS
AATCATGTGCATAATGTACC+TGG 0.550092 1.2:-61016530 MS.gene70801:CDS
TGAGATCAAGGTTGCGATCG+AGG 0.551018 1.2:-61016261 MS.gene70801:CDS
GGAGCTGGAGCCGGAGCTGG+AGG 0.552899 1.2:-61016221 MS.gene70801:CDS
CGATGACGAATTAGATGAAG+AGG 0.555461 1.2:-61017278 MS.gene70801:CDS
CATGAAGGGGAAGATTCAGC+TGG 0.556910 1.2:-61016945 MS.gene70801:CDS
TCCGAAGCTTATCAACAAGC+TGG 0.557121 1.2:+61016909 None:intergenic
GATGACGGAGGTGGGGACAG+CGG 0.558674 1.2:+61017183 None:intergenic
TGAACCAAAACGGGAACCAA+TGG 0.563497 1.2:-61017110 MS.gene70801:CDS
GAGGAGTTGAGATCGAATGC+TGG 0.564654 1.2:-61016242 MS.gene70801:CDS
CAAATTTCTGGAGAGCAGTA+CGG 0.564956 1.2:+61016870 None:intergenic
TTCAGGGGAGCCGTCGATGG+TGG 0.568651 1.2:+61017129 None:intergenic
GACGAGATTACGATTCTGCA+AGG 0.568828 1.2:-61017034 MS.gene70801:CDS
GTCGATGGTGGTTGCTGATG+CGG 0.569074 1.2:+61017141 None:intergenic
ATTGTTCGGTTTGATAGTGG+TGG 0.575227 1.2:+61017227 None:intergenic
TTCGATAACTCCTTCAACAC+CGG 0.578505 1.2:+61016473 None:intergenic
GTGTGGTAGGGCTAAGATGA+CGG 0.582706 1.2:+61017168 None:intergenic
GGAGGTGTATTCGAAGCGGT+TGG 0.582984 1.2:-61016297 MS.gene70801:CDS
TGATGCGGAGGCGTGTGGTA+GGG 0.584219 1.2:+61017156 None:intergenic
CGAAGGTTTCATCATGGCTG+GGG 0.585517 1.2:+61017317 None:intergenic
ACCAAAAGGACTCCCACTCA+TGG 0.591963 1.2:+61016445 None:intergenic
GCTGGTGCAGGATGAGATCA+AGG 0.595852 1.2:-61016273 MS.gene70801:CDS
GATAATCATCAGAATAACTC+CGG 0.596997 1.2:-61016602 MS.gene70801:CDS
TTATCGAATGCTACCATGAG+TGG 0.599446 1.2:-61016458 MS.gene70801:CDS
CGACGCCGAAGGTTTCATCA+TGG 0.602599 1.2:+61017311 None:intergenic
GTTGCTGATGCGGAGGCGTG+TGG 0.602604 1.2:+61017151 None:intergenic
GGGCTAAGATGACGGAGGTG+GGG 0.612836 1.2:+61017176 None:intergenic
GAAATTTCACACAAAATCTG+GGG 0.613296 1.2:-61016797 MS.gene70801:CDS
GACGGAGGTGGGGACAGCGG+CGG 0.622679 1.2:+61017186 None:intergenic
AGCTGGAGGTGTATTCGAAG+CGG 0.623559 1.2:-61016301 MS.gene70801:CDS
TGGTGTACCTGTTGATGAAG+AGG 0.630690 1.2:-61016750 MS.gene70801:CDS
GCATCAGCAACCACCATCGA+CGG 0.632628 1.2:-61017139 MS.gene70801:CDS
CTCATGGCATTCTCTCGCAA+CGG 0.637134 1.2:-61017349 MS.gene70801:CDS
ACCTGGATTGATTGAAGAGA+CGG 0.638435 1.2:-61016513 MS.gene70801:CDS
AGCTTGTTGATAAGCTTCGG+AGG 0.643387 1.2:-61016907 MS.gene70801:CDS
TATCGAATGCTACCATGAGT+GGG 0.643483 1.2:-61016457 MS.gene70801:CDS
AGGCGGTGGATGAAAAGTGG+AGG 0.644490 1.2:-61016340 MS.gene70801:CDS
GCAGCAGATCTTGGAGCTGG+AGG 0.646814 1.2:-61016315 MS.gene70801:CDS
GGTGAAGAGCTGTTTGACAC+CGG 0.666966 1.2:-61016492 MS.gene70801:CDS
GATGGTGGTTGCTGATGCGG+AGG 0.694249 1.2:+61017144 None:intergenic
TGTACCTGTTGATGAAGAGG+AGG 0.712098 1.2:-61016747 MS.gene70801:CDS
TGGTAGGGCTAAGATGACGG+AGG 0.739720 1.2:+61017171 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! GAAAATCGTGAAAAAAGTAA+CGG - chr1.2:61016988-61017007 MS.gene70801:CDS 25.0%
! TGAAATTTCACACAAAATCT+GGG - chr1.2:61016744-61016763 MS.gene70801:CDS 25.0%
! TTGAAATTTCACACAAAATC+TGG - chr1.2:61016743-61016762 MS.gene70801:CDS 25.0%
! TTTGTGTGAAATTTCAAAAG+TGG + chr1.2:61016740-61016759 None:intergenic 25.0%
AAATGAGAAGAATTAGGGTT+AGG + chr1.2:61016841-61016860 None:intergenic 30.0%
AATGAGAAGAATTAGGGTTA+GGG + chr1.2:61016840-61016859 None:intergenic 30.0%
CAGTCAAATGAGAAGAATTA+GGG + chr1.2:61016846-61016865 None:intergenic 30.0%
GAAATTTCACACAAAATCTG+GGG - chr1.2:61016745-61016764 MS.gene70801:CDS 30.0%
GATAATCATCAGAATAACTC+CGG - chr1.2:61016940-61016959 MS.gene70801:CDS 30.0%
TCAGTCAAATGAGAAGAATT+AGG + chr1.2:61016847-61016866 None:intergenic 30.0%
! ATCGTTTTATGATCACATGA+AGG - chr1.2:61016582-61016601 MS.gene70801:CDS 30.0%
! TCGTTTTATGATCACATGAA+GGG - chr1.2:61016583-61016602 MS.gene70801:CDS 30.0%
AAGAATTAGGGTTAGGGTTA+GGG + chr1.2:61016834-61016853 None:intergenic 35.0%
AATCATGTGCATAATGTACC+TGG - chr1.2:61017012-61017031 MS.gene70801:CDS 35.0%
ATTGCTGCTATTGGTATTAC+CGG + chr1.2:61016962-61016981 None:intergenic 35.0%
CCAGAAATTTGATTCTGGTA+AGG - chr1.2:61016684-61016703 MS.gene70801:CDS 35.0%
CCTTACCAGAATCAAATTTC+TGG + chr1.2:61016687-61016706 None:intergenic 35.0%
TCGTCTTATCATAACGATAC+TGG - chr1.2:61016559-61016578 MS.gene70801:CDS 35.0%
TTCATCAACATTGCTGCTAT+TGG + chr1.2:61016971-61016990 None:intergenic 35.0%
! CACTTGGGTTTTTGAATTTG+GGG - chr1.2:61017169-61017188 MS.gene70801:CDS 35.0%
! CCACTTGGGTTTTTGAATTT+GGG - chr1.2:61017168-61017187 MS.gene70801:CDS 35.0%
! CGTTTTATGATCACATGAAG+GGG - chr1.2:61016584-61016603 MS.gene70801:CDS 35.0%
AAAAAGCTTTCGAGAATCGC+TGG + chr1.2:61016467-61016486 None:intergenic 40.0%
AACGGTAATTCAACGCCAAT+TGG - chr1.2:61016772-61016791 MS.gene70801:CDS 40.0%
ACCTGGATTGATTGAAGAGA+CGG - chr1.2:61017029-61017048 MS.gene70801:CDS 40.0%
ATTTCCTCCTCTTCATCAAC+AGG + chr1.2:61016802-61016821 None:intergenic 40.0%
CCCAAATTCAAAAACCCAAG+TGG + chr1.2:61017171-61017190 None:intergenic 40.0%
CGATGACGAATTAGATGAAG+AGG - chr1.2:61016264-61016283 MS.gene70801:CDS 40.0%
GAAGAATTAGGGTTAGGGTT+AGG + chr1.2:61016835-61016854 None:intergenic 40.0%
GAATGTTGACGGAGATTGTT+CGG + chr1.2:61016332-61016351 None:intergenic 40.0%
GCTCTCCAGAAATTTGATTC+TGG - chr1.2:61016679-61016698 MS.gene70801:CDS 40.0%
TATCGAATGCTACCATGAGT+GGG - chr1.2:61017085-61017104 MS.gene70801:CDS 40.0%
TCATCAACAGGTACACCAAT+TGG + chr1.2:61016790-61016809 None:intergenic 40.0%
TTATCGAATGCTACCATGAG+TGG - chr1.2:61017084-61017103 MS.gene70801:CDS 40.0%
TTCGATAACTCCTTCAACAC+CGG + chr1.2:61017072-61017091 None:intergenic 40.0%
! CAAATTTCTGGAGAGCAGTA+CGG + chr1.2:61016675-61016694 None:intergenic 40.0%
! CTTATCAACAAGCTGGTTCT+TGG + chr1.2:61016629-61016648 None:intergenic 40.0%
! GAGATTGTTCGGTTTGATAG+TGG + chr1.2:61016321-61016340 None:intergenic 40.0%
! GCCACTTGGGTTTTTGAATT+TGG - chr1.2:61017167-61017186 MS.gene70801:CDS 40.0%
! TCAATGAATACTGTGCCACT+TGG - chr1.2:61017153-61017172 MS.gene70801:CDS 40.0%
! TGGGTTTTTGAATTTGGGGA+GGG - chr1.2:61017173-61017192 MS.gene70801:CDS 40.0%
! TTGGGTTTTTGAATTTGGGG+AGG - chr1.2:61017172-61017191 MS.gene70801:CDS 40.0%
!! ACCAGCTTGTTGATAAGCTT+CGG - chr1.2:61016632-61016651 MS.gene70801:CDS 40.0%
!! ATTGTTCGGTTTGATAGTGG+TGG + chr1.2:61016318-61016337 None:intergenic 40.0%
!! CAATGAATACTGTGCCACTT+GGG - chr1.2:61017154-61017173 MS.gene70801:CDS 40.0%
!!! GAAAGCTTTTTCAGCGTATC+TGG - chr1.2:61016476-61016495 MS.gene70801:CDS 40.0%
AAAAGGCGGTGGATGAAAAG+TGG - chr1.2:61017199-61017218 MS.gene70801:CDS 45.0%
ACCGTCTCTTCAATCAATCC+AGG + chr1.2:61017033-61017052 None:intergenic 45.0%
GACGAGATTACGATTCTGCA+AGG - chr1.2:61016508-61016527 MS.gene70801:CDS 45.0%
TAGGGTTAGGGTTAGGGTTT+GGG + chr1.2:61016828-61016847 None:intergenic 45.0%
TCCGAAGCTTATCAACAAGC+TGG + chr1.2:61016636-61016655 None:intergenic 45.0%
TGAACCAAAACGGGAACCAA+TGG - chr1.2:61016432-61016451 MS.gene70801:CDS 45.0%
TTAGGGTTAGGGTTAGGGTT+TGG + chr1.2:61016829-61016848 None:intergenic 45.0%
! GGGTTTTTGAATTTGGGGAG+GGG - chr1.2:61017174-61017193 MS.gene70801:CDS 45.0%
! TGGTGTACCTGTTGATGAAG+AGG - chr1.2:61016792-61016811 MS.gene70801:CDS 45.0%
! TGTACCTGTTGATGAAGAGG+AGG - chr1.2:61016795-61016814 MS.gene70801:CDS 45.0%
!! AGCTTGTTGATAAGCTTCGG+AGG - chr1.2:61016635-61016654 MS.gene70801:CDS 45.0%
!! TTCGGTTTGATAGTGGTGGT+CGG + chr1.2:61016314-61016333 None:intergenic 45.0%
!!! AGTGGGAGTCCTTTTGGTTT+TGG - chr1.2:61017102-61017121 MS.gene70801:CDS 45.0%
!!! ATTGGTTCCCGTTTTGGTTC+AGG + chr1.2:61016433-61016452 None:intergenic 45.0%
!!! CTTTTGGTTTTGGGGGAAGA+GGG - chr1.2:61017112-61017131 MS.gene70801:CDS 45.0%
!!! GTGGGAGTCCTTTTGGTTTT+GGG - chr1.2:61017103-61017122 MS.gene70801:CDS 45.0%
!!! TCTTCCATTGGTTCCCGTTT+TGG + chr1.2:61016439-61016458 None:intergenic 45.0%
!!! TGGGAGTCCTTTTGGTTTTG+GGG - chr1.2:61017104-61017123 MS.gene70801:CDS 45.0%
!!! TTGGTTCCCGTTTTGGTTCA+GGG + chr1.2:61016432-61016451 None:intergenic 45.0%
ACCAAAAGGACTCCCACTCA+TGG + chr1.2:61017100-61017119 None:intergenic 50.0%
ATTTCCACTACCTCCAGCTC+CGG + chr1.2:61017334-61017353 None:intergenic 50.0%
CATGAAGGGGAAGATTCAGC+TGG - chr1.2:61016597-61016616 MS.gene70801:CDS 50.0%
CCCAGCCATGATGAAACCTT+CGG - chr1.2:61016226-61016245 MS.gene70801:CDS 50.0%
CCGAAGGTTTCATCATGGCT+GGG + chr1.2:61016229-61016248 None:intergenic 50.0%
CCTCTTCCCCCAAAACCAAA+AGG + chr1.2:61017114-61017133 None:intergenic 50.0%
CGAAGGTTTCATCATGGCTG+GGG + chr1.2:61016228-61016247 None:intergenic 50.0%
GAATTTGGGGAGGGGAGAAA+AGG - chr1.2:61017182-61017201 MS.gene70801:CDS 50.0%
GAGGAGTTGAGATCGAATGC+TGG - chr1.2:61017300-61017319 MS.gene70801:CDS 50.0%
GGTGAAGAGCTGTTTGACAC+CGG - chr1.2:61017050-61017069 MS.gene70801:CDS 50.0%
GTGTGGTAGGGCTAAGATGA+CGG + chr1.2:61016377-61016396 None:intergenic 50.0%
TGAGATCAAGGTTGCGATCG+AGG - chr1.2:61017281-61017300 MS.gene70801:CDS 50.0%
TTGAGATCGAATGCTGGAGC+TGG - chr1.2:61017306-61017325 MS.gene70801:CDS 50.0%
! ACCATGAGTGGGAGTCCTTT+TGG - chr1.2:61017096-61017115 MS.gene70801:CDS 50.0%
! AGCTGGAGGTGTATTCGAAG+CGG - chr1.2:61017241-61017260 MS.gene70801:CDS 50.0%
! CACAAAATCTGGGGCAGCAA+CGG - chr1.2:61016754-61016773 MS.gene70801:CDS 50.0%
! CTGTTTGACACCGGTGTTGA+AGG - chr1.2:61017059-61017078 MS.gene70801:CDS 50.0%
!! TCGCTGGTCTTCTCTTCCAT+TGG + chr1.2:61016451-61016470 None:intergenic 50.0%
!! TGATAGTGGTGGTCGGAGTT+TGG + chr1.2:61016307-61016326 None:intergenic 50.0%
!!! CCTTTTGGTTTTGGGGGAAG+AGG - chr1.2:61017111-61017130 MS.gene70801:CDS 50.0%
!!! GGGAGTCCTTTTGGTTTTGG+GGG - chr1.2:61017105-61017124 MS.gene70801:CDS 50.0%
!!! TGGTTCCCGTTTTGGTTCAG+GGG + chr1.2:61016431-61016450 None:intergenic 50.0%
ACGGCTCCCCTGAACCAAAA+CGG - chr1.2:61016422-61016441 MS.gene70801:CDS 55.0%
AGGCGGTGGATGAAAAGTGG+AGG - chr1.2:61017202-61017221 MS.gene70801:CDS 55.0%
AGTGGTGGTCGGAGTTTGGT+TGG + chr1.2:61016303-61016322 None:intergenic 55.0%
CGACGCCGAAGGTTTCATCA+TGG + chr1.2:61016234-61016253 None:intergenic 55.0%
CGCAATCTCGCAAGAGATCG+CGG - chr1.2:61016878-61016897 MS.gene70801:CDS 55.0%
GAAGCAGCAGATCTTGGAGC+TGG - chr1.2:61017224-61017243 MS.gene70801:CDS 55.0%
GCAATCTCGCAAGAGATCGC+GGG - chr1.2:61016879-61016898 MS.gene70801:CDS 55.0%
GCATCAGCAACCACCATCGA+CGG - chr1.2:61016403-61016422 MS.gene70801:CDS 55.0%
GCCGAAGGTTTCATCATGGC+TGG + chr1.2:61016230-61016249 None:intergenic 55.0%
GCTGGTGCAGGATGAGATCA+AGG - chr1.2:61017269-61017288 MS.gene70801:CDS 55.0%
GTATTCGAAGCGGTTGGAGC+TGG - chr1.2:61017251-61017270 MS.gene70801:CDS 55.0%
GTGGAGGAAGCAGCAGATCT+TGG - chr1.2:61017218-61017237 MS.gene70801:CDS 55.0%
TTTGGGGAGGGGAGAAAAGG+CGG - chr1.2:61017185-61017204 MS.gene70801:CDS 55.0%
! GATGAAACCTTCGGCGTCGA+AGG - chr1.2:61016235-61016254 MS.gene70801:CDS 55.0%
! GGAGGTGTATTCGAAGCGGT+TGG - chr1.2:61017245-61017264 MS.gene70801:CDS 55.0%
! GTCGATGGTGGTTGCTGATG+CGG + chr1.2:61016404-61016423 None:intergenic 55.0%
! TGGTAGGGCTAAGATGACGG+AGG + chr1.2:61016374-61016393 None:intergenic 55.0%
!! AGGGCTAAGATGACGGAGGT+GGG + chr1.2:61016370-61016389 None:intergenic 55.0%
!! TAGGGCTAAGATGACGGAGG+TGG + chr1.2:61016371-61016390 None:intergenic 55.0%
!!! GGTTTTGGGGGAAGAGGGTT+TGG - chr1.2:61017117-61017136 MS.gene70801:CDS 55.0%
CGGCTCCCCTGAACCAAAAC+GGG - chr1.2:61016423-61016442 MS.gene70801:CDS 60.0%
GCAGCAGATCTTGGAGCTGG+AGG - chr1.2:61017227-61017246 MS.gene70801:CDS 60.0%
GTCTTCACCTTCGACGCCGA+AGG + chr1.2:61016245-61016264 None:intergenic 60.0%
TCGAATGCTGGAGCTGGAGC+CGG - chr1.2:61017312-61017331 MS.gene70801:CDS 60.0%
! GATGGTGGTTGCTGATGCGG+AGG + chr1.2:61016401-61016420 None:intergenic 60.0%
! GGAAGAGGGTTTGGAGCTGG+AGG - chr1.2:61017126-61017145 MS.gene70801:CDS 60.0%
! TGATGCGGAGGCGTGTGGTA+GGG + chr1.2:61016389-61016408 None:intergenic 60.0%
!! GGGCTAAGATGACGGAGGTG+GGG + chr1.2:61016369-61016388 None:intergenic 60.0%
CAAGAGATCGCGGGCAGCTG+AGG - chr1.2:61016888-61016907 MS.gene70801:CDS 65.0%
GAAGCGGTTGGAGCTGGTGC+AGG - chr1.2:61017257-61017276 MS.gene70801:CDS 65.0%
GCGGCGGTGGCGAATGTTGA+CGG + chr1.2:61016343-61016362 None:intergenic 65.0%
TGGTTCAGGGGAGCCGTCGA+TGG + chr1.2:61016419-61016438 None:intergenic 65.0%
TTCAGGGGAGCCGTCGATGG+TGG + chr1.2:61016416-61016435 None:intergenic 65.0%
! CTGATGCGGAGGCGTGTGGT+AGG + chr1.2:61016390-61016409 None:intergenic 65.0%
! GGGGGAAGAGGGTTTGGAGC+TGG - chr1.2:61017123-61017142 MS.gene70801:CDS 65.0%
! GTTGCTGATGCGGAGGCGTG+TGG + chr1.2:61016394-61016413 None:intergenic 65.0%
!! GATGACGGAGGTGGGGACAG+CGG + chr1.2:61016362-61016381 None:intergenic 65.0%
GAGATCGCGGGCAGCTGAGG+AGG - chr1.2:61016891-61016910 MS.gene70801:CDS 70.0%
GGAGCCGGAGCTGGAGGTAG+TGG - chr1.2:61017327-61017346 MS.gene70801:CDS 70.0%
GGGGAGGGGAGAAAAGGCGG+TGG - chr1.2:61017188-61017207 MS.gene70801:CDS 70.0%
GACGGAGGTGGGGACAGCGG+CGG + chr1.2:61016359-61016378 None:intergenic 75.0%
GCTGGAGCTGGAGCCGGAGC+TGG - chr1.2:61017318-61017337 MS.gene70801:CDS 75.0%
GGAGCTGGAGCCGGAGCTGG+AGG - chr1.2:61017321-61017340 MS.gene70801:CDS 75.0%
! GGAGGTGGGGACAGCGGCGG+TGG + chr1.2:61016356-61016375 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 61016196 61017368 61016196 ID=MS.gene70801
chr1.2 mRNA 61016196 61017368 61016196 ID=MS.gene70801.t1;Parent=MS.gene70801
chr1.2 exon 61016196 61017368 61016196 ID=MS.gene70801.t1.exon1;Parent=MS.gene70801.t1
chr1.2 CDS 61016196 61017368 61016196 ID=cds.MS.gene70801.t1;Parent=MS.gene70801.t1
Gene Sequence

>MS.gene70801

ATGGCATTCTCTCGCAACGGCGTAGTTATCCCCAGCCATGATGAAACCTTCGGCGTCGAAGGTGAAGACGATGACGAATTAGATGAAGAGGACAACTATTTCGTCCAACCAAACTCCGACCACCACTATCAAACCGAACAATCTCCGTCAACATTCGCCACCGCCGCTGTCCCCACCTCCGTCATCTTAGCCCTACCACACGCCTCCGCATCAGCAACCACCATCGACGGCTCCCCTGAACCAAAACGGGAACCAATGGAAGAGAAGACCAGCGATTCTCGAAAGCTTTTTCAGCGTATCTGGACTGAAGAAGACGAGATTACGATTCTGCAAGGTTTTCTCGACTACAACGCAAATCGTGAATCGTCTTATCATAACGATACTGGATCGTTTTATGATCACATGAAGGGGAAGATTCAGCTGGATTTCACCAAGAACCAGCTTGTTGATAAGCTTCGGAGGCTGAAGAAGAAGTACCGTACTGCTCTCCAGAAATTTGATTCTGGTAAGGATTTTACTTTCAAAAGTGCTCATGATCAAGCCACTTTTGAAATTTCACACAAAATCTGGGGCAGCAACGGTAATTCAACGCCAATTGGTGTACCTGTTGATGAAGAGGAGGAAATGAGCCCAAACCCTAACCCTAACCCTAATTCTTCTCATTTGACTGAGAAGAAAGCTGCGCAATCTCGCAAGAGATCGCGGGCAGCTGAGGAGGAAAAGTGTGAGTTGACTGATTCTAGAGATAATCATCAGAATAACTCCGGTAATACCAATAGCAGCAATGTTGATGAAAATCGTGAAAAAAGTAACGGTAATCATGTGCATAATGTACCTGGATTGATTGAAGAGACGGTGAAGAGCTGTTTGACACCGGTGTTGAAGGAGTTATCGAATGCTACCATGAGTGGGAGTCCTTTTGGTTTTGGGGGAAGAGGGTTTGGAGCTGGAGGCTTTTCAATGAATACTGTGCCACTTGGGTTTTTGAATTTGGGGAGGGGAGAAAAGGCGGTGGATGAAAAGTGGAGGAAGCAGCAGATCTTGGAGCTGGAGGTGTATTCGAAGCGGTTGGAGCTGGTGCAGGATGAGATCAAGGTTGCGATCGAGGAGTTGAGATCGAATGCTGGAGCTGGAGCCGGAGCTGGAGGTAGTGGAAATAATACCAATCAATAG
Protein sequence

>MS.gene70801.t1

MAFSRNGVVIPSHDETFGVEGEDDDELDEEDNYFVQPNSDHHYQTEQSPSTFATAAVPTSVILALPHASASATTIDGSPEPKREPMEEKTSDSRKLFQRIWTEEDEITILQGFLDYNANRESSYHNDTGSFYDHMKGKIQLDFTKNQLVDKLRRLKKKYRTALQKFDSGKDFTFKSAHDQATFEISHKIWGSNGNSTPIGVPVDEEEEMSPNPNPNPNSSHLTEKKAAQSRKRSRAAEEEKCELTDSRDNHQNNSGNTNSSNVDENREKSNGNHVHNVPGLIEETVKSCLTPVLKELSNATMSGSPFGFGGRGFGAGGFSMNTVPLGFLNLGRGEKAVDEKWRKQQILELEVYSKRLELVQDEIKVAIEELRSNAGAGAGAGGSGNNTNQ