Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71030.t1 | XP_003590172.1 | 89.2 | 325 | 29 | 1 | 1 | 319 | 1 | 325 | 1.10E-161 | 579.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71030.t1 | Q84TE6 | 30.8 | 156 | 88 | 9 | 13 | 158 | 27 | 172 | 1.8e-08 | 61.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71030.t1 | G7I6N9 | 89.2 | 325 | 29 | 1 | 1 | 319 | 1 | 325 | 7.8e-162 | 579.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene71030.t1 | TF | NAC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71030.t1 | MTR_1g045470 | 89.231 | 325 | 29 | 1 | 1 | 319 | 1 | 325 | 0.0 | 585 |
| MS.gene71030.t1 | MTR_1g053575 | 54.930 | 355 | 90 | 11 | 1 | 318 | 1 | 322 | 1.17e-109 | 322 |
| MS.gene71030.t1 | MTR_7g116460 | 62.051 | 195 | 62 | 1 | 1 | 183 | 1 | 195 | 1.25e-81 | 246 |
| MS.gene71030.t1 | MTR_1g019820 | 43.779 | 217 | 108 | 7 | 95 | 305 | 2 | 210 | 1.08e-37 | 134 |
| MS.gene71030.t1 | MTR_7g005280 | 33.333 | 144 | 84 | 4 | 13 | 154 | 23 | 156 | 1.62e-15 | 75.5 |
| MS.gene71030.t1 | MTR_7g100990 | 33.548 | 155 | 84 | 6 | 13 | 157 | 19 | 164 | 1.74e-15 | 76.3 |
| MS.gene71030.t1 | MTR_5g041940 | 31.373 | 153 | 88 | 6 | 13 | 157 | 11 | 154 | 2.03e-11 | 63.5 |
| MS.gene71030.t1 | MTR_3g109340 | 26.486 | 185 | 120 | 6 | 13 | 188 | 30 | 207 | 3.10e-11 | 63.9 |
| MS.gene71030.t1 | MTR_5g012080 | 32.886 | 149 | 91 | 7 | 13 | 157 | 15 | 158 | 5.31e-11 | 63.2 |
| MS.gene71030.t1 | MTR_8g094580 | 34.667 | 150 | 80 | 6 | 13 | 154 | 15 | 154 | 9.63e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71030.t1 | AT5G13180 | 34.932 | 146 | 80 | 6 | 13 | 154 | 22 | 156 | 5.89e-14 | 70.9 |
| MS.gene71030.t1 | AT5G62380 | 31.373 | 153 | 96 | 6 | 13 | 162 | 15 | 161 | 1.80e-13 | 70.5 |
| MS.gene71030.t1 | AT5G62380 | 31.373 | 153 | 96 | 6 | 13 | 162 | 15 | 161 | 1.80e-13 | 70.5 |
| MS.gene71030.t1 | AT2G24430 | 31.081 | 148 | 92 | 5 | 13 | 157 | 24 | 164 | 4.61e-13 | 69.3 |
| MS.gene71030.t1 | AT2G24430 | 31.081 | 148 | 92 | 5 | 13 | 157 | 24 | 164 | 4.61e-13 | 69.3 |
| MS.gene71030.t1 | AT3G10480 | 33.758 | 157 | 90 | 9 | 13 | 163 | 35 | 183 | 5.00e-13 | 69.7 |
| MS.gene71030.t1 | AT5G08790 | 32.620 | 187 | 103 | 8 | 3 | 179 | 5 | 178 | 2.09e-12 | 67.0 |
| MS.gene71030.t1 | AT3G10480 | 33.544 | 158 | 90 | 9 | 13 | 163 | 35 | 184 | 3.22e-12 | 67.4 |
| MS.gene71030.t1 | AT5G63790 | 33.540 | 161 | 88 | 6 | 3 | 154 | 48 | 198 | 1.21e-11 | 65.1 |
| MS.gene71030.t1 | AT5G63790 | 33.540 | 161 | 88 | 6 | 3 | 154 | 58 | 208 | 1.35e-11 | 64.7 |
| MS.gene71030.t1 | AT1G56010 | 30.769 | 156 | 88 | 9 | 13 | 158 | 27 | 172 | 3.05e-11 | 63.9 |
| MS.gene71030.t1 | AT5G66300 | 29.747 | 158 | 102 | 6 | 13 | 167 | 20 | 171 | 3.06e-11 | 63.5 |
| MS.gene71030.t1 | AT1G77450 | 33.333 | 150 | 83 | 7 | 13 | 155 | 18 | 157 | 4.64e-11 | 62.8 |
| MS.gene71030.t1 | AT3G17730 | 30.061 | 163 | 100 | 8 | 13 | 168 | 14 | 169 | 5.95e-11 | 62.0 |
| MS.gene71030.t1 | AT1G69490 | 32.258 | 155 | 84 | 7 | 13 | 157 | 17 | 160 | 9.54e-11 | 62.0 |
Find 64 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTAGCAGATTTCTTCTTTA+AGG | 0.123640 | 1.4:+29684762 | None:intergenic |
| CCTCAATTCTTCTTCCAATA+AGG | 0.222490 | 1.4:-29684974 | MS.gene71030:CDS |
| TTCAAGAATGGTGATATTAT+TGG | 0.230700 | 1.4:+29684882 | None:intergenic |
| TGGGAGATTTGGGAAGAATT+TGG | 0.235579 | 1.4:-29684829 | MS.gene71030:CDS |
| CAAAGAATCCATGGGAGATT+TGG | 0.252767 | 1.4:-29684840 | MS.gene71030:CDS |
| TCTGCATAGAACATAATTAT+TGG | 0.253885 | 1.4:+29684434 | None:intergenic |
| TAAGTTGATTACTTGGATTT+TGG | 0.305325 | 1.4:+29683415 | None:intergenic |
| GCACTATTGGACTTGGTAGA+TGG | 0.308744 | 1.4:-29684723 | MS.gene71030:CDS |
| CCAGGAACGATTGTCATTCT+TGG | 0.309932 | 1.4:+29684354 | None:intergenic |
| TCAAGAATGGTGATATTATT+GGG | 0.331273 | 1.4:+29684883 | None:intergenic |
| GCAAGAACAAAGTTCTCTTT+TGG | 0.336878 | 1.4:+29683794 | None:intergenic |
| TAAAACTGATTGGAAATCAT+TGG | 0.339556 | 1.4:+29683264 | None:intergenic |
| CCATTGTTAAGTTGATTACT+TGG | 0.345697 | 1.4:+29683408 | None:intergenic |
| AGTGGGTGCGATAACCTTAT+TGG | 0.366373 | 1.4:+29684960 | None:intergenic |
| ATATGTAGCACTTACAGATT+TGG | 0.368326 | 1.4:+29683757 | None:intergenic |
| AAAGAATCCATGGGAGATTT+GGG | 0.379921 | 1.4:-29684839 | MS.gene71030:CDS |
| TCACGCGTAGTTCGCACTAT+TGG | 0.388612 | 1.4:-29684736 | MS.gene71030:CDS |
| TATAGGAGTACAATAATGTT+TGG | 0.388726 | 1.4:-29683455 | MS.gene71030:intron |
| GAGTACAATAATGTTTGGTT+GGG | 0.392823 | 1.4:-29683450 | MS.gene71030:CDS |
| TTCTTTGATAAGCAATCCTT+TGG | 0.396079 | 1.4:-29684563 | MS.gene71030:intron |
| CCAAGAATGACAATCGTTCC+TGG | 0.400269 | 1.4:-29684354 | MS.gene71030:CDS |
| GGATTTGGTTCTTGTCTTTG+CGG | 0.414473 | 1.4:+29684671 | None:intergenic |
| GGAGTACAATAATGTTTGGT+TGG | 0.416706 | 1.4:-29683451 | MS.gene71030:CDS |
| TTAAGGTTGTAAAGAAGTAT+AGG | 0.426160 | 1.4:+29684779 | None:intergenic |
| GCAAGATCCATCCACCATCT+TGG | 0.430936 | 1.4:+29684605 | None:intergenic |
| CAAGATCCATCCACCATCTT+GGG | 0.431083 | 1.4:+29684606 | None:intergenic |
| ATTCTTGAATACGATTTGTT+CGG | 0.433061 | 1.4:-29684868 | MS.gene71030:CDS |
| TAAGTCCTTATAAAACTGAT+TGG | 0.443750 | 1.4:+29683254 | None:intergenic |
| ACAGTGATTGCGGCAGGTCC+AGG | 0.448826 | 1.4:+29684336 | None:intergenic |
| CTTATTGGAAGAAGAATTGA+GGG | 0.451784 | 1.4:+29684975 | None:intergenic |
| CACTATTGGACTTGGTAGAT+GGG | 0.484248 | 1.4:-29684722 | MS.gene71030:CDS |
| AATCTCCCATGGATTCTTTG+CGG | 0.489258 | 1.4:+29684843 | None:intergenic |
| AGTACAATAATGTTTGGTTG+GGG | 0.510246 | 1.4:-29683449 | MS.gene71030:CDS |
| CCTTATTGGAAGAAGAATTG+AGG | 0.526520 | 1.4:+29684974 | None:intergenic |
| GAACAAATCGTATTCAAGAA+TGG | 0.535727 | 1.4:+29684870 | None:intergenic |
| AATTCTTCCCAAATCTCCCA+TGG | 0.537118 | 1.4:+29684832 | None:intergenic |
| TGAGACTTTGTATTAACCAC+AGG | 0.541279 | 1.4:+29683848 | None:intergenic |
| TGTAGCACTTACAGATTTGG+TGG | 0.543882 | 1.4:+29683760 | None:intergenic |
| TCGGCACCGCAAAGAATCCA+TGG | 0.544845 | 1.4:-29684849 | MS.gene71030:CDS |
| ATGGTGATATTATTGGGCAA+AGG | 0.553419 | 1.4:+29684889 | None:intergenic |
| GATTGCTTATCAAAGAATTG+TGG | 0.559456 | 1.4:+29684569 | None:intergenic |
| AAGAGTGACACTTCCCAAGA+TGG | 0.562341 | 1.4:-29684619 | MS.gene71030:CDS |
| TTGTAGAAGTTCATCATCAG+TGG | 0.566028 | 1.4:+29684942 | None:intergenic |
| TAATACAAAGTCTCAACGTA+AGG | 0.571382 | 1.4:-29683840 | MS.gene71030:CDS |
| ACACTTCCCAAGATGGTGGA+TGG | 0.575047 | 1.4:-29684612 | MS.gene71030:CDS |
| ATGATGATGCTAGTATGTCT+TGG | 0.583925 | 1.4:-29683353 | MS.gene71030:CDS |
| TGCTTATCAAAGAATTGTGG+AGG | 0.589131 | 1.4:+29684572 | None:intergenic |
| ACAAGTACAGTGATTGCGGC+AGG | 0.590813 | 1.4:+29684330 | None:intergenic |
| CCAAGTAATCAACTTAACAA+TGG | 0.597996 | 1.4:-29683408 | MS.gene71030:CDS |
| ATTGGACTTGGTAGATGGGA+AGG | 0.599219 | 1.4:-29684718 | MS.gene71030:CDS |
| AGCTGCAACGAAAACAACTC+AGG | 0.602909 | 1.4:+29683330 | None:intergenic |
| AAAGACAAGAACCAAATCCT+CGG | 0.605189 | 1.4:-29684667 | MS.gene71030:CDS |
| GTAGTTCGCACTATTGGACT+TGG | 0.612695 | 1.4:-29684730 | MS.gene71030:CDS |
| TGAAGGATGCTTGATCGAAG+AGG | 0.615586 | 1.4:-29683295 | MS.gene71030:CDS |
| TGTAGAAGTTCATCATCAGT+GGG | 0.615614 | 1.4:+29684943 | None:intergenic |
| CAGCTGAGAGAGATGAATGA+AGG | 0.618301 | 1.4:-29683312 | MS.gene71030:CDS |
| CGGCACCGCAAAGAATCCAT+GGG | 0.621679 | 1.4:-29684848 | MS.gene71030:CDS |
| AGATGGGAAGGTGAAGACGC+TGG | 0.631377 | 1.4:-29684706 | MS.gene71030:CDS |
| AGTGACACTTCCCAAGATGG+TGG | 0.639769 | 1.4:-29684616 | MS.gene71030:CDS |
| GGAGCTTCTCACTCATATCG+TGG | 0.640997 | 1.4:-29684808 | MS.gene71030:CDS |
| GTAGCACTTACAGATTTGGT+GGG | 0.644008 | 1.4:+29683761 | None:intergenic |
| ACTTACAAGTACAGTGATTG+CGG | 0.645359 | 1.4:+29684326 | None:intergenic |
| GTACAATAATGTTTGGTTGG+GGG | 0.656762 | 1.4:-29683448 | MS.gene71030:CDS |
| AAAAGAATCAAACTGTCCTG+TGG | 0.676178 | 1.4:-29683864 | MS.gene71030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTTCAAGAAGATAAAA+AGG | + | chr1.4:29684049-29684068 | None:intergenic | 15.0% |
| !!! | ATAAAATCTAATCTTTTTAC+TGG | + | chr1.4:29683969-29683988 | None:intergenic | 15.0% |
| !!! | ATACAATATAGATTTTTTCT+TGG | - | chr1.4:29683711-29683730 | MS.gene71030:intron | 15.0% |
| !!! | TACAATATAGATTTTTTCTT+GGG | - | chr1.4:29683712-29683731 | MS.gene71030:intron | 15.0% |
| !! | AAAAAGAAAAATATGTGGAA+TGG | - | chr1.4:29684389-29684408 | MS.gene71030:CDS | 20.0% |
| !! | GAGTAGTAAATCATTAAAAT+AGG | + | chr1.4:29684199-29684218 | None:intergenic | 20.0% |
| !! | GTATATTTGCAAAAAAACTA+GGG | + | chr1.4:29683695-29683714 | None:intergenic | 20.0% |
| !! | TAAGGAAAAAGAAAAATATG+TGG | - | chr1.4:29684384-29684403 | MS.gene71030:CDS | 20.0% |
| !! | TGTATATTTGCAAAAAAACT+AGG | + | chr1.4:29683696-29683715 | None:intergenic | 20.0% |
| !!! | TAACATTGTTCTTTTTCATT+TGG | - | chr1.4:29684276-29684295 | MS.gene71030:intron | 20.0% |
| !!! | TGTTATGAATTTTATTGTAG+AGG | + | chr1.4:29683295-29683314 | None:intergenic | 20.0% |
| !!! | TTATGATTTGATTTTGTATC+TGG | - | chr1.4:29683738-29683757 | MS.gene71030:intron | 20.0% |
| !!! | TTTGATGCAAATTATTTCTT+TGG | - | chr1.4:29684123-29684142 | MS.gene71030:intron | 20.0% |
| ! | AAAAACAAGATTGAAGTAGA+TGG | - | chr1.4:29684822-29684841 | MS.gene71030:CDS | 25.0% |
| ! | AATCACATGCTTAATTGATT+AGG | + | chr1.4:29684084-29684103 | None:intergenic | 25.0% |
| ! | CTCTTTCATTCTCATATTAT+AGG | - | chr1.4:29684734-29684753 | MS.gene71030:CDS | 25.0% |
| ! | TAAAACTGATTGGAAATCAT+TGG | + | chr1.4:29684945-29684964 | None:intergenic | 25.0% |
| ! | TAAGTCCTTATAAAACTGAT+TGG | + | chr1.4:29684955-29684974 | None:intergenic | 25.0% |
| ! | TCAAGAATGGTGATATTATT+GGG | + | chr1.4:29683326-29683345 | None:intergenic | 25.0% |
| ! | TCTGCATAGAACATAATTAT+TGG | + | chr1.4:29683775-29683794 | None:intergenic | 25.0% |
| ! | TTCAAGAATGGTGATATTAT+TGG | + | chr1.4:29683327-29683346 | None:intergenic | 25.0% |
| !! | AATGAAAGAGCACAATAATA+AGG | + | chr1.4:29684724-29684743 | None:intergenic | 25.0% |
| !! | ATTCTTGAATACGATTTGTT+CGG | - | chr1.4:29683338-29683357 | MS.gene71030:CDS | 25.0% |
| !! | GTTTTATAAGGACTTATTGT+TGG | - | chr1.4:29684959-29684978 | MS.gene71030:CDS | 25.0% |
| !! | TATAGGAGTACAATAATGTT+TGG | - | chr1.4:29684751-29684770 | MS.gene71030:CDS | 25.0% |
| !! | TTAAGGTTGTAAAGAAGTAT+AGG | + | chr1.4:29683430-29683449 | None:intergenic | 25.0% |
| !!! | CTTTTTCATTTGGATTTGTA+GGG | - | chr1.4:29684286-29684305 | MS.gene71030:intron | 25.0% |
| !!! | GATTTCCAATCAGTTTTATA+AGG | - | chr1.4:29684947-29684966 | MS.gene71030:CDS | 25.0% |
| !!! | TAAGTTGATTACTTGGATTT+TGG | + | chr1.4:29684794-29684813 | None:intergenic | 25.0% |
| !!! | TCTTTTTCATTTGGATTTGT+AGG | - | chr1.4:29684285-29684304 | MS.gene71030:intron | 25.0% |
| AGTACAATAATGTTTGGTTG+GGG | - | chr1.4:29684757-29684776 | MS.gene71030:CDS | 30.0% | |
| AGTAGCAGATTTCTTCTTTA+AGG | + | chr1.4:29683447-29683466 | None:intergenic | 30.0% | |
| ATATGTAGCACTTACAGATT+TGG | + | chr1.4:29684452-29684471 | None:intergenic | 30.0% | |
| CCAAGTAATCAACTTAACAA+TGG | - | chr1.4:29684798-29684817 | MS.gene71030:CDS | 30.0% | |
| CTTATTGGAAGAAGAATTGA+GGG | + | chr1.4:29683234-29683253 | None:intergenic | 30.0% | |
| GAACAAATCGTATTCAAGAA+TGG | + | chr1.4:29683339-29683358 | None:intergenic | 30.0% | |
| GAGTACAATAATGTTTGGTT+GGG | - | chr1.4:29684756-29684775 | MS.gene71030:CDS | 30.0% | |
| GATTGCTTATCAAAGAATTG+TGG | + | chr1.4:29683640-29683659 | None:intergenic | 30.0% | |
| TAATACAAAGTCTCAACGTA+AGG | - | chr1.4:29684366-29684385 | MS.gene71030:CDS | 30.0% | |
| TTCTTTGATAAGCAATCCTT+TGG | - | chr1.4:29683643-29683662 | MS.gene71030:intron | 30.0% | |
| !! | CCATTGTTAAGTTGATTACT+TGG | + | chr1.4:29684801-29684820 | None:intergenic | 30.0% |
| !! | GCAACAATATTTTTGCTTAC+AGG | + | chr1.4:29683822-29683841 | None:intergenic | 30.0% |
| AAAACTAGGGCTACAAATCT+TGG | + | chr1.4:29683682-29683701 | None:intergenic | 35.0% | |
| AAAAGAATCAAACTGTCCTG+TGG | - | chr1.4:29684342-29684361 | MS.gene71030:CDS | 35.0% | |
| AAAGAATCCATGGGAGATTT+GGG | - | chr1.4:29683367-29683386 | MS.gene71030:CDS | 35.0% | |
| AAAGACAAGAACCAAATCCT+CGG | - | chr1.4:29683539-29683558 | MS.gene71030:intron | 35.0% | |
| ACTTACAAGTACAGTGATTG+CGG | + | chr1.4:29683883-29683902 | None:intergenic | 35.0% | |
| ATGGTGATATTATTGGGCAA+AGG | + | chr1.4:29683320-29683339 | None:intergenic | 35.0% | |
| CCTCAATTCTTCTTCCAATA+AGG | - | chr1.4:29683232-29683251 | MS.gene71030:CDS | 35.0% | |
| CCTTATTGGAAGAAGAATTG+AGG | + | chr1.4:29683235-29683254 | None:intergenic | 35.0% | |
| GGAGTACAATAATGTTTGGT+TGG | - | chr1.4:29684755-29684774 | MS.gene71030:CDS | 35.0% | |
| GTACAATAATGTTTGGTTGG+GGG | - | chr1.4:29684758-29684777 | MS.gene71030:CDS | 35.0% | |
| TGAGACTTTGTATTAACCAC+AGG | + | chr1.4:29684361-29684380 | None:intergenic | 35.0% | |
| TGCTTATCAAAGAATTGTGG+AGG | + | chr1.4:29683637-29683656 | None:intergenic | 35.0% | |
| TGTAGAAGTTCATCATCAGT+GGG | + | chr1.4:29683266-29683285 | None:intergenic | 35.0% | |
| TTGTAGAAGTTCATCATCAG+TGG | + | chr1.4:29683267-29683286 | None:intergenic | 35.0% | |
| ! | ACCCTAAACACAGTGTTTTA+CGG | + | chr1.4:29684011-29684030 | None:intergenic | 35.0% |
| ! | ATGATGATGCTAGTATGTCT+TGG | - | chr1.4:29684853-29684872 | MS.gene71030:CDS | 35.0% |
| ! | GCAAGAACAAAGTTCTCTTT+TGG | + | chr1.4:29684415-29684434 | None:intergenic | 35.0% |
| ! | GGACAGTTTGATTCTTTTGT+TGG | + | chr1.4:29684340-29684359 | None:intergenic | 35.0% |
| !! | TTTTGTATCTGGTTTCTTGC+AGG | - | chr1.4:29683749-29683768 | MS.gene71030:intron | 35.0% |
| AATCTCCCATGGATTCTTTG+CGG | + | chr1.4:29683366-29683385 | None:intergenic | 40.0% | |
| AATTCTTCCCAAATCTCCCA+TGG | + | chr1.4:29683377-29683396 | None:intergenic | 40.0% | |
| CAAAGAATCCATGGGAGATT+TGG | - | chr1.4:29683366-29683385 | MS.gene71030:CDS | 40.0% | |
| CCAAAGCATAACATTCTTGC+AGG | + | chr1.4:29683913-29683932 | None:intergenic | 40.0% | |
| CCCGTAAAACACTGTGTTTA+GGG | - | chr1.4:29684007-29684026 | MS.gene71030:intron | 40.0% | |
| CCTGCAAGAATGTTATGCTT+TGG | - | chr1.4:29683910-29683929 | MS.gene71030:intron | 40.0% | |
| GCTACAAATCTTGGAACCTA+GGG | + | chr1.4:29683673-29683692 | None:intergenic | 40.0% | |
| TCCCGTAAAACACTGTGTTT+AGG | - | chr1.4:29684006-29684025 | MS.gene71030:intron | 40.0% | |
| TGGGAGATTTGGGAAGAATT+TGG | - | chr1.4:29683377-29683396 | MS.gene71030:CDS | 40.0% | |
| TGTAGCACTTACAGATTTGG+TGG | + | chr1.4:29684449-29684468 | None:intergenic | 40.0% | |
| ! | CACTATTGGACTTGGTAGAT+GGG | - | chr1.4:29683484-29683503 | MS.gene71030:intron | 40.0% |
| ! | CCCTAAACACAGTGTTTTAC+GGG | + | chr1.4:29684010-29684029 | None:intergenic | 40.0% |
| ! | GTAGCACTTACAGATTTGGT+GGG | + | chr1.4:29684448-29684467 | None:intergenic | 40.0% |
| !! | GGATTTGGTTCTTGTCTTTG+CGG | + | chr1.4:29683538-29683557 | None:intergenic | 40.0% |
| !!! | GAAAACGTTTTTTCATGCCG+AGG | + | chr1.4:29683559-29683578 | None:intergenic | 40.0% |
| !!! | GTTTTTTCATGCCGAGGATT+TGG | + | chr1.4:29683553-29683572 | None:intergenic | 40.0% |
| AAGAGTGACACTTCCCAAGA+TGG | - | chr1.4:29683587-29683606 | MS.gene71030:intron | 45.0% | |
| AGCTGCAACGAAAACAACTC+AGG | + | chr1.4:29684879-29684898 | None:intergenic | 45.0% | |
| AGTGGGTGCGATAACCTTAT+TGG | + | chr1.4:29683249-29683268 | None:intergenic | 45.0% | |
| CAAGATCCATCCACCATCTT+GGG | + | chr1.4:29683603-29683622 | None:intergenic | 45.0% | |
| CAGCTGAGAGAGATGAATGA+AGG | - | chr1.4:29684894-29684913 | MS.gene71030:CDS | 45.0% | |
| CCAAGAATGACAATCGTTCC+TGG | - | chr1.4:29683852-29683871 | MS.gene71030:CDS | 45.0% | |
| CCAGGAACGATTGTCATTCT+TGG | + | chr1.4:29683855-29683874 | None:intergenic | 45.0% | |
| GGCTACAAATCTTGGAACCT+AGG | + | chr1.4:29683674-29683693 | None:intergenic | 45.0% | |
| GTAGTTCGCACTATTGGACT+TGG | - | chr1.4:29683476-29683495 | MS.gene71030:intron | 45.0% | |
| TGAAGGATGCTTGATCGAAG+AGG | - | chr1.4:29684911-29684930 | MS.gene71030:CDS | 45.0% | |
| ! | ATTGGACTTGGTAGATGGGA+AGG | - | chr1.4:29683488-29683507 | MS.gene71030:intron | 45.0% |
| ! | GCACTATTGGACTTGGTAGA+TGG | - | chr1.4:29683483-29683502 | MS.gene71030:intron | 45.0% |
| ACAAGTACAGTGATTGCGGC+AGG | + | chr1.4:29683879-29683898 | None:intergenic | 50.0% | |
| AGTGACACTTCCCAAGATGG+TGG | - | chr1.4:29683590-29683609 | MS.gene71030:intron | 50.0% | |
| GCAAGATCCATCCACCATCT+TGG | + | chr1.4:29683604-29683623 | None:intergenic | 50.0% | |
| GCAATCCTTTGGTAAGCCCT+AGG | - | chr1.4:29683654-29683673 | MS.gene71030:intron | 50.0% | |
| GGAGCTTCTCACTCATATCG+TGG | - | chr1.4:29683398-29683417 | MS.gene71030:CDS | 50.0% | |
| TCACGCGTAGTTCGCACTAT+TGG | - | chr1.4:29683470-29683489 | MS.gene71030:intron | 50.0% | |
| TGGAACCTAGGGCTTACCAA+AGG | + | chr1.4:29683662-29683681 | None:intergenic | 50.0% | |
| !! | ACACTTCCCAAGATGGTGGA+TGG | - | chr1.4:29683594-29683613 | MS.gene71030:intron | 50.0% |
| AGATGGGAAGGTGAAGACGC+TGG | - | chr1.4:29683500-29683519 | MS.gene71030:intron | 55.0% | |
| CGGCACCGCAAAGAATCCAT+GGG | - | chr1.4:29683358-29683377 | MS.gene71030:CDS | 55.0% | |
| TCGGCACCGCAAAGAATCCA+TGG | - | chr1.4:29683357-29683376 | MS.gene71030:CDS | 55.0% | |
| ACAGTGATTGCGGCAGGTCC+AGG | + | chr1.4:29683873-29683892 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 29683227 | 29685001 | 29683227 | ID=MS.gene71030 |
| chr1.4 | mRNA | 29683227 | 29685001 | 29683227 | ID=MS.gene71030.t1;Parent=MS.gene71030 |
| chr1.4 | exon | 29684564 | 29685001 | 29684564 | ID=MS.gene71030.t1.exon1;Parent=MS.gene71030.t1 |
| chr1.4 | CDS | 29684564 | 29685001 | 29684564 | ID=cds.MS.gene71030.t1;Parent=MS.gene71030.t1 |
| chr1.4 | exon | 29684332 | 29684457 | 29684332 | ID=MS.gene71030.t1.exon2;Parent=MS.gene71030.t1 |
| chr1.4 | CDS | 29684332 | 29684457 | 29684332 | ID=cds.MS.gene71030.t1;Parent=MS.gene71030.t1 |
| chr1.4 | exon | 29683772 | 29683921 | 29683772 | ID=MS.gene71030.t1.exon3;Parent=MS.gene71030.t1 |
| chr1.4 | CDS | 29683772 | 29683921 | 29683772 | ID=cds.MS.gene71030.t1;Parent=MS.gene71030.t1 |
| chr1.4 | exon | 29683227 | 29683472 | 29683227 | ID=MS.gene71030.t1.exon4;Parent=MS.gene71030.t1 |
| chr1.4 | CDS | 29683227 | 29683472 | 29683227 | ID=cds.MS.gene71030.t1;Parent=MS.gene71030.t1 |
| Gene Sequence |
| Protein sequence |