Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71197.t1 | AET03267.1 | 97.2 | 213 | 6 | 0 | 22 | 234 | 100 | 312 | 3.30E-107 | 397.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71197.t1 | Q9SK91 | 53.9 | 206 | 91 | 2 | 23 | 228 | 102 | 303 | 3.0e-53 | 209.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71197.t1 | G7LH18 | 97.2 | 213 | 6 | 0 | 22 | 234 | 100 | 312 | 2.4e-107 | 397.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene71197.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71197.t1 | MTR_8g066770 | 97.436 | 234 | 6 | 0 | 1 | 234 | 79 | 312 | 2.78e-171 | 474 |
MS.gene71197.t1 | MTR_3g099620 | 54.825 | 228 | 84 | 3 | 16 | 230 | 96 | 317 | 3.62e-82 | 248 |
MS.gene71197.t1 | MTR_7g113830 | 52.703 | 222 | 92 | 3 | 16 | 230 | 96 | 311 | 3.37e-73 | 225 |
MS.gene71197.t1 | MTR_1g082480 | 53.555 | 211 | 83 | 2 | 29 | 229 | 129 | 334 | 3.57e-73 | 226 |
MS.gene71197.t1 | MTR_5g064950 | 51.351 | 222 | 101 | 3 | 15 | 231 | 79 | 298 | 5.78e-70 | 216 |
MS.gene71197.t1 | MTR_1g082480 | 53.804 | 184 | 70 | 2 | 29 | 202 | 129 | 307 | 8.21e-62 | 197 |
MS.gene71197.t1 | MTR_5g064950 | 50.777 | 193 | 88 | 3 | 15 | 202 | 79 | 269 | 4.24e-59 | 189 |
MS.gene71197.t1 | MTR_0194s0050 | 47.391 | 230 | 104 | 6 | 9 | 225 | 156 | 381 | 4.14e-57 | 186 |
MS.gene71197.t1 | MTR_8g024210 | 50.000 | 200 | 91 | 2 | 26 | 225 | 171 | 361 | 7.56e-54 | 177 |
MS.gene71197.t1 | MTR_2g022280 | 37.356 | 174 | 106 | 2 | 36 | 208 | 1 | 172 | 1.96e-36 | 127 |
MS.gene71197.t1 | MTR_3g090850 | 36.548 | 197 | 84 | 3 | 34 | 189 | 99 | 295 | 1.35e-34 | 126 |
MS.gene71197.t1 | MTR_1g028470 | 30.909 | 220 | 132 | 2 | 11 | 210 | 62 | 281 | 1.10e-28 | 110 |
MS.gene71197.t1 | MTR_5g030430 | 26.943 | 193 | 134 | 3 | 14 | 206 | 474 | 659 | 3.23e-13 | 68.9 |
MS.gene71197.t1 | MTR_1g112680 | 28.934 | 197 | 109 | 7 | 16 | 194 | 305 | 488 | 3.21e-12 | 65.9 |
MS.gene71197.t1 | MTR_8g067280 | 29.319 | 191 | 126 | 4 | 16 | 206 | 447 | 628 | 7.90e-12 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71197.t1 | AT1G72210 | 57.143 | 210 | 81 | 3 | 25 | 230 | 114 | 318 | 8.86e-72 | 222 |
MS.gene71197.t1 | AT1G22490 | 54.146 | 205 | 90 | 2 | 25 | 229 | 104 | 304 | 1.20e-70 | 218 |
MS.gene71197.t1 | AT5G46690 | 55.702 | 228 | 79 | 4 | 23 | 228 | 75 | 302 | 2.48e-65 | 206 |
MS.gene71197.t1 | AT1G72210 | 57.143 | 182 | 69 | 3 | 25 | 202 | 114 | 290 | 3.16e-60 | 192 |
MS.gene71197.t1 | AT1G22490 | 53.933 | 178 | 78 | 2 | 25 | 202 | 104 | 277 | 5.34e-59 | 189 |
MS.gene71197.t1 | AT3G24140 | 42.797 | 236 | 121 | 3 | 3 | 225 | 162 | 396 | 7.22e-54 | 178 |
MS.gene71197.t1 | AT3G24140 | 42.797 | 236 | 121 | 3 | 3 | 225 | 162 | 396 | 7.34e-54 | 178 |
MS.gene71197.t1 | AT5G46690 | 53.960 | 202 | 71 | 4 | 23 | 202 | 75 | 276 | 1.51e-52 | 172 |
MS.gene71197.t1 | AT4G01460 | 44.608 | 204 | 110 | 2 | 26 | 228 | 105 | 306 | 3.40e-49 | 164 |
MS.gene71197.t1 | AT4G01460 | 44.608 | 204 | 110 | 2 | 26 | 228 | 105 | 306 | 3.40e-49 | 164 |
MS.gene71197.t1 | AT5G65320 | 41.905 | 210 | 101 | 4 | 30 | 228 | 96 | 295 | 6.44e-45 | 152 |
MS.gene71197.t1 | AT2G46810 | 43.939 | 198 | 99 | 4 | 27 | 223 | 112 | 298 | 7.39e-41 | 142 |
MS.gene71197.t1 | AT3G61950 | 43.842 | 203 | 93 | 5 | 26 | 223 | 117 | 303 | 9.83e-41 | 142 |
MS.gene71197.t1 | AT5G65320 | 43.169 | 183 | 84 | 3 | 30 | 202 | 96 | 268 | 1.55e-40 | 140 |
MS.gene71197.t1 | AT2G46810 | 43.939 | 198 | 99 | 4 | 27 | 223 | 172 | 358 | 1.78e-40 | 142 |
MS.gene71197.t1 | AT2G46810 | 43.719 | 199 | 98 | 4 | 27 | 223 | 184 | 370 | 3.15e-40 | 142 |
MS.gene71197.t1 | AT3G61950 | 43.842 | 203 | 93 | 5 | 26 | 223 | 168 | 354 | 4.06e-40 | 141 |
MS.gene71197.t1 | AT3G61950 | 45.562 | 169 | 72 | 4 | 25 | 189 | 116 | 268 | 1.15e-37 | 133 |
MS.gene71197.t1 | AT3G61950 | 45.833 | 168 | 71 | 4 | 26 | 189 | 168 | 319 | 4.68e-37 | 133 |
MS.gene71197.t1 | AT2G46810 | 45.506 | 178 | 83 | 4 | 27 | 202 | 112 | 277 | 2.02e-35 | 128 |
MS.gene71197.t1 | AT3G06120 | 35.227 | 176 | 102 | 2 | 36 | 202 | 1 | 173 | 9.99e-32 | 115 |
MS.gene71197.t1 | AT5G53210 | 62.338 | 77 | 28 | 1 | 27 | 103 | 94 | 169 | 8.45e-26 | 103 |
MS.gene71197.t1 | AT5G53210 | 66.667 | 69 | 22 | 1 | 27 | 95 | 94 | 161 | 9.73e-26 | 103 |
MS.gene71197.t1 | AT3G61950 | 67.442 | 43 | 14 | 0 | 25 | 67 | 167 | 209 | 5.35e-13 | 66.2 |
MS.gene71197.t1 | AT3G61950 | 67.442 | 43 | 14 | 0 | 25 | 67 | 167 | 209 | 5.35e-13 | 66.2 |
Find 43 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTCAATTCTTCCAAGTAAA+TGG | 0.199817 | 8.3:+36300706 | None:intergenic |
TTGTCCTAGTGAGAATTCTA+AGG | 0.334781 | 8.3:+36301615 | None:intergenic |
ACCCTTTGAACATAGGATTC+AGG | 0.351099 | 8.3:+36302630 | None:intergenic |
ATGTGTATTTGTTAGGTGTT+TGG | 0.351401 | 8.3:+36301696 | None:intergenic |
GTCTTGGATGTGTATTTGTT+AGG | 0.355555 | 8.3:+36301689 | None:intergenic |
AGCTATGGCAGCTTTGGTCT+TGG | 0.365189 | 8.3:+36301673 | None:intergenic |
TCTTTGTTCTTACAAACTCT+TGG | 0.388402 | 8.3:+36302747 | None:intergenic |
TGTGTATTTGTTAGGTGTTT+GGG | 0.389980 | 8.3:+36301697 | None:intergenic |
TAGCTCCTTCACAAACTCTA+TGG | 0.424567 | 8.3:+36301853 | None:intergenic |
ACAGCAGTTCACCATTTACT+TGG | 0.428976 | 8.3:-36300717 | MS.gene71197:CDS |
GATATCAGCTATGGCAGCTT+TGG | 0.431877 | 8.3:+36301667 | None:intergenic |
TGCATATACCTTGGCACTGA+TGG | 0.451216 | 8.3:+36301493 | None:intergenic |
TGTCACTACCATACAACCTT+TGG | 0.451551 | 8.3:-36301525 | MS.gene71197:CDS |
GAAACAAACCCTTTGAACAT+AGG | 0.458862 | 8.3:+36302623 | None:intergenic |
GAAGCTGCTTCACTAATTTG+TGG | 0.468225 | 8.3:-36300681 | MS.gene71197:CDS |
GTAGAATACCAAAGGTTGTA+TGG | 0.470288 | 8.3:+36301517 | None:intergenic |
GCCTGAATCCTATGTTCAAA+GGG | 0.476318 | 8.3:-36302631 | MS.gene71197:intron |
AGGACAACTAACAAAATTAG+TGG | 0.489302 | 8.3:-36301588 | MS.gene71197:CDS |
TTGTGTATCCTCAATATACA+TGG | 0.490488 | 8.3:-36301721 | MS.gene71197:CDS |
CCATTTACTTGGAAGAATTG+AGG | 0.491479 | 8.3:-36300706 | MS.gene71197:CDS |
ATGTATATGAAGGTTGAAGA+AGG | 0.503265 | 8.3:-36300771 | MS.gene71197:intron |
CATTGAGATGTAGGATGCTA+AGG | 0.511349 | 8.3:+36301546 | None:intergenic |
GTTTGGGACCATGTATATTG+AGG | 0.512489 | 8.3:+36301713 | None:intergenic |
CAACTAACAAAATTAGTGGC+TGG | 0.512924 | 8.3:-36301584 | MS.gene71197:CDS |
GGTGACCAAGCCTCAATAGT+AGG | 0.516200 | 8.3:-36301881 | MS.gene71197:CDS |
TTCCAACTTGGTTCAGTAGA+CGG | 0.525532 | 8.3:-36300747 | MS.gene71197:CDS |
TGCCTGAATCCTATGTTCAA+AGG | 0.527020 | 8.3:-36302632 | MS.gene71197:CDS |
GTTGAAGAAGGATTCCAACT+TGG | 0.528504 | 8.3:-36300759 | MS.gene71197:CDS |
TGGTAGTGACATTGAGATGT+AGG | 0.548971 | 8.3:+36301537 | None:intergenic |
CACCACCTACTATTGAGGCT+TGG | 0.549608 | 8.3:+36301876 | None:intergenic |
TGCCGTCTACTGAACCAAGT+TGG | 0.552934 | 8.3:+36300745 | None:intergenic |
AACAATGAATAATCCTCAAG+TGG | 0.569610 | 8.3:-36302796 | MS.gene71197:CDS |
TGTAACCTCGATATCAGCTA+TGG | 0.576417 | 8.3:+36301658 | None:intergenic |
CAAACCTTAGAATTCTCACT+AGG | 0.582899 | 8.3:-36301619 | MS.gene71197:CDS |
ATAATCCTCAAGTGGTGCAA+AGG | 0.583756 | 8.3:-36302788 | MS.gene71197:CDS |
TATGGCACCACCTACTATTG+AGG | 0.605310 | 8.3:+36301871 | None:intergenic |
ATTCTCACTAGGACAAGACC+AGG | 0.613739 | 8.3:-36301608 | MS.gene71197:CDS |
AGCACAAAACAATGAAGACA+TGG | 0.633394 | 8.3:-36301774 | MS.gene71197:CDS |
ATTCTACTCCATCAGTGCCA+AGG | 0.634691 | 8.3:-36301501 | MS.gene71197:intron |
AGCTGCCATAGCTGATATCG+AGG | 0.641430 | 8.3:-36301663 | MS.gene71197:CDS |
CTGATGGAGTAGAATACCAA+AGG | 0.657988 | 8.3:+36301509 | None:intergenic |
GACCAAGCCTCAATAGTAGG+TGG | 0.661400 | 8.3:-36301878 | MS.gene71197:CDS |
TGGTGCCATAGAGTTTGTGA+AGG | 0.669387 | 8.3:-36301858 | MS.gene71197:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTATAAGCAAAAAATATT+AGG | + | chr8.3:36302217-36302236 | None:intergenic | 10.0% |
!! | TTATTTATTTATGTATATGA+AGG | - | chr8.3:36302706-36302725 | MS.gene71197:CDS | 10.0% |
!!! | AATTTTTTTGTTTTGTTATA+GGG | - | chr8.3:36301585-36301604 | MS.gene71197:CDS | 10.0% |
!!! | TTTGTTAATTTTTATTGTAA+TGG | - | chr8.3:36302533-36302552 | MS.gene71197:intron | 10.0% |
!! | AATGAATTAATCAATATTAG+AGG | - | chr8.3:36302305-36302324 | MS.gene71197:intron | 15.0% |
!! | AATTAATCAATGAATCTAAA+AGG | + | chr8.3:36302134-36302153 | None:intergenic | 15.0% |
!! | ATATTTGGCTAAAATATATA+TGG | - | chr8.3:36302666-36302685 | MS.gene71197:CDS | 15.0% |
!!! | CAATTTTTTTGTTTTGTTAT+AGG | - | chr8.3:36301584-36301603 | MS.gene71197:CDS | 15.0% |
!!! | GAATTTTCATAATTTATACA+AGG | + | chr8.3:36302640-36302659 | None:intergenic | 15.0% |
!!! | TACTTAATTTTTTTGTTGTT+GGG | - | chr8.3:36300910-36300929 | MS.gene71197:intron | 15.0% |
!!! | TTATATTTCTATCTCTAATT+TGG | - | chr8.3:36302050-36302069 | MS.gene71197:intron | 15.0% |
!! | AAAGCAAAAGAAAGAAAAAA+TGG | + | chr8.3:36301163-36301182 | None:intergenic | 20.0% |
!! | ATTACTATCATATCAAATGA+AGG | + | chr8.3:36302031-36302050 | None:intergenic | 20.0% |
!!! | CATTGATTAATTCATGTATT+AGG | - | chr8.3:36302142-36302161 | MS.gene71197:intron | 20.0% |
!!! | GTACTTAATTTTTTTGTTGT+TGG | - | chr8.3:36300909-36300928 | MS.gene71197:intron | 20.0% |
!!! | TATTCTTTACATGTTCTAAA+TGG | - | chr8.3:36301532-36301551 | MS.gene71197:CDS | 20.0% |
!!! | TTTTTGCTTATAATAGTGAT+CGG | + | chr8.3:36302107-36302126 | None:intergenic | 20.0% |
! | AATGTTACCATAATTTCAAC+TGG | + | chr8.3:36301395-36301414 | None:intergenic | 25.0% |
! | ATGTTACCATAATTTCAACT+GGG | + | chr8.3:36301394-36301413 | None:intergenic | 25.0% |
! | ATTACTGCAAAAATTAGAGA+TGG | + | chr8.3:36302419-36302438 | None:intergenic | 25.0% |
! | TACACAAAAAATTGTGCAAA+AGG | + | chr8.3:36301753-36301772 | None:intergenic | 25.0% |
! | TCATTGTGTAATAATGTGTT+TGG | + | chr8.3:36302193-36302212 | None:intergenic | 25.0% |
! | TGAAAATTCAGAGAGATATT+TGG | - | chr8.3:36302651-36302670 | MS.gene71197:CDS | 25.0% |
! | TTACTGCAAAAATTAGAGAT+GGG | + | chr8.3:36302418-36302437 | None:intergenic | 25.0% |
!! | TATACATGAAGCTTTTCAAA+TGG | + | chr8.3:36301505-36301524 | None:intergenic | 25.0% |
!! | TTTTTGCTTATAATAGTGAC+TGG | - | chr8.3:36302222-36302241 | MS.gene71197:intron | 25.0% |
!!! | GTTCATTCATTTGTTTTCTA+CGG | + | chr8.3:36300811-36300830 | None:intergenic | 25.0% |
!!! | TAATGTTTTTGATGTCTTTG+AGG | + | chr8.3:36301367-36301386 | None:intergenic | 25.0% |
!!! | TTCTTTCTTTTGCTTTTGTA+TGG | - | chr8.3:36301167-36301186 | MS.gene71197:intron | 25.0% |
AACAATGAATAATCCTCAAG+TGG | - | chr8.3:36300691-36300710 | MS.gene71197:CDS | 30.0% | |
ACAAAAAATTGTGCAAAAGG+TGG | + | chr8.3:36301750-36301769 | None:intergenic | 30.0% | |
ACACTTTATGACTATCAATG+AGG | - | chr8.3:36301049-36301068 | MS.gene71197:intron | 30.0% | |
AGGACAACTAACAAAATTAG+TGG | - | chr8.3:36301899-36301918 | MS.gene71197:intron | 30.0% | |
ATGTATATGAAGGTTGAAGA+AGG | - | chr8.3:36302716-36302735 | MS.gene71197:CDS | 30.0% | |
ATTTCCCTTAATAGCAAGAT+TGG | - | chr8.3:36300958-36300977 | MS.gene71197:intron | 30.0% | |
CAATATAGTTGCATATACCT+TGG | + | chr8.3:36302006-36302025 | None:intergenic | 30.0% | |
GCAAAAGAAAGAAAAAATGG+AGG | + | chr8.3:36301160-36301179 | None:intergenic | 30.0% | |
TAATGTCCCAGTTGAAATTA+TGG | - | chr8.3:36301385-36301404 | MS.gene71197:intron | 30.0% | |
TCTTTGTTCTTACAAACTCT+TGG | + | chr8.3:36300743-36300762 | None:intergenic | 30.0% | |
TGCTTTGTGAAAGATGTAAT+AGG | - | chr8.3:36301097-36301116 | MS.gene71197:intron | 30.0% | |
TTGTGTATCCTCAATATACA+TGG | - | chr8.3:36301766-36301785 | MS.gene71197:CDS | 30.0% | |
TTTATGACTATCAATGAGGT+GGG | - | chr8.3:36301053-36301072 | MS.gene71197:intron | 30.0% | |
TTTCCCTTAATAGCAAGATT+GGG | - | chr8.3:36300959-36300978 | MS.gene71197:intron | 30.0% | |
! | AAGCATATTTGTGCATGTTT+TGG | + | chr8.3:36301082-36301101 | None:intergenic | 30.0% |
! | ACTAATTTTGTTAGTTGTCC+TGG | + | chr8.3:36301900-36301919 | None:intergenic | 30.0% |
! | ATGTGTATTTGTTAGGTGTT+TGG | + | chr8.3:36301794-36301813 | None:intergenic | 30.0% |
! | CTGTGATTTAAAACCTTGTT+TGG | + | chr8.3:36301246-36301265 | None:intergenic | 30.0% |
! | TGTGTATTTGTTAGGTGTTT+GGG | + | chr8.3:36301793-36301812 | None:intergenic | 30.0% |
AGCACAAAACAATGAAGACA+TGG | - | chr8.3:36301713-36301732 | MS.gene71197:CDS | 35.0% | |
CAAACCTTAGAATTCTCACT+AGG | - | chr8.3:36301868-36301887 | MS.gene71197:CDS | 35.0% | |
CAACTAACAAAATTAGTGGC+TGG | - | chr8.3:36301903-36301922 | MS.gene71197:intron | 35.0% | |
CCATTTACTTGGAAGAATTG+AGG | - | chr8.3:36302781-36302800 | MS.gene71197:CDS | 35.0% | |
CCTCAATTCTTCCAAGTAAA+TGG | + | chr8.3:36302784-36302803 | None:intergenic | 35.0% | |
CTTTATGACTATCAATGAGG+TGG | - | chr8.3:36301052-36301071 | MS.gene71197:intron | 35.0% | |
GAAACAAACCCTTTGAACAT+AGG | + | chr8.3:36300867-36300886 | None:intergenic | 35.0% | |
GTAGAATACCAAAGGTTGTA+TGG | + | chr8.3:36301973-36301992 | None:intergenic | 35.0% | |
GTCTTGGATGTGTATTTGTT+AGG | + | chr8.3:36301801-36301820 | None:intergenic | 35.0% | |
TTGTCCTAGTGAGAATTCTA+AGG | + | chr8.3:36301875-36301894 | None:intergenic | 35.0% | |
! | ACGCTATTTCAACTCTTTCT+AGG | - | chr8.3:36302270-36302289 | MS.gene71197:intron | 35.0% |
!! | ATCTCCCAATCTTGCTATTA+AGG | + | chr8.3:36300966-36300985 | None:intergenic | 35.0% |
!! | TCTCCCAATCTTGCTATTAA+GGG | + | chr8.3:36300965-36300984 | None:intergenic | 35.0% |
AAGTGGTGCAAAGGAAAAAG+AGG | - | chr8.3:36300708-36300727 | MS.gene71197:CDS | 40.0% | |
ACAGCAGTTCACCATTTACT+TGG | - | chr8.3:36302770-36302789 | MS.gene71197:CDS | 40.0% | |
ACCCTTTGAACATAGGATTC+AGG | + | chr8.3:36300860-36300879 | None:intergenic | 40.0% | |
ATAATCCTCAAGTGGTGCAA+AGG | - | chr8.3:36300699-36300718 | MS.gene71197:CDS | 40.0% | |
ATTGAGTCTATGGTTAAGCG+CGG | + | chr8.3:36301344-36301363 | None:intergenic | 40.0% | |
CATTGAGATGTAGGATGCTA+AGG | + | chr8.3:36301944-36301963 | None:intergenic | 40.0% | |
CTGATGGAGTAGAATACCAA+AGG | + | chr8.3:36301981-36302000 | None:intergenic | 40.0% | |
GAAGCTGCTTCACTAATTTG+TGG | - | chr8.3:36302806-36302825 | MS.gene71197:CDS | 40.0% | |
GCCTGAATCCTATGTTCAAA+GGG | - | chr8.3:36300856-36300875 | MS.gene71197:intron | 40.0% | |
GTTGAAGAAGGATTCCAACT+TGG | - | chr8.3:36302728-36302747 | MS.gene71197:CDS | 40.0% | |
TAGCTCCTTCACAAACTCTA+TGG | + | chr8.3:36301637-36301656 | None:intergenic | 40.0% | |
TGCCTGAATCCTATGTTCAA+AGG | - | chr8.3:36300855-36300874 | MS.gene71197:intron | 40.0% | |
TGTAACCTCGATATCAGCTA+TGG | + | chr8.3:36301832-36301851 | None:intergenic | 40.0% | |
TGTCACTACCATACAACCTT+TGG | - | chr8.3:36301962-36301981 | MS.gene71197:intron | 40.0% | |
TTCCAACTTGGTTCAGTAGA+CGG | - | chr8.3:36302740-36302759 | MS.gene71197:CDS | 40.0% | |
! | GTCTTTGAGGATTGAGTCTA+TGG | + | chr8.3:36301354-36301373 | None:intergenic | 40.0% |
! | GTTTGGGACCATGTATATTG+AGG | + | chr8.3:36301777-36301796 | None:intergenic | 40.0% |
! | TGGTAGTGACATTGAGATGT+AGG | + | chr8.3:36301953-36301972 | None:intergenic | 40.0% |
! | TTTTTCCTTTGCACCACTTG+AGG | + | chr8.3:36300707-36300726 | None:intergenic | 40.0% |
ACTTCTTGCGCTACCAAACA+AGG | - | chr8.3:36301230-36301249 | MS.gene71197:intron | 45.0% | |
ATTCTACTCCATCAGTGCCA+AGG | - | chr8.3:36301986-36302005 | MS.gene71197:intron | 45.0% | |
ATTCTCACTAGGACAAGACC+AGG | - | chr8.3:36301879-36301898 | MS.gene71197:CDS | 45.0% | |
GATATCAGCTATGGCAGCTT+TGG | + | chr8.3:36301823-36301842 | None:intergenic | 45.0% | |
TATGGCACCACCTACTATTG+AGG | + | chr8.3:36301619-36301638 | None:intergenic | 45.0% | |
! | TGCATATACCTTGGCACTGA+TGG | + | chr8.3:36301997-36302016 | None:intergenic | 45.0% |
!! | TGGTGCCATAGAGTTTGTGA+AGG | - | chr8.3:36301629-36301648 | MS.gene71197:CDS | 45.0% |
AGCTGCCATAGCTGATATCG+AGG | - | chr8.3:36301824-36301843 | MS.gene71197:CDS | 50.0% | |
CACCACCTACTATTGAGGCT+TGG | + | chr8.3:36301614-36301633 | None:intergenic | 50.0% | |
GACCAAGCCTCAATAGTAGG+TGG | - | chr8.3:36301609-36301628 | MS.gene71197:CDS | 50.0% | |
GGTGACCAAGCCTCAATAGT+AGG | - | chr8.3:36301606-36301625 | MS.gene71197:CDS | 50.0% | |
TGCCGTCTACTGAACCAAGT+TGG | + | chr8.3:36302745-36302764 | None:intergenic | 50.0% | |
! | AGCTATGGCAGCTTTGGTCT+TGG | + | chr8.3:36301817-36301836 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 36300677 | 36302832 | 36300677 | ID=MS.gene71197 |
chr8.3 | mRNA | 36300677 | 36302832 | 36300677 | ID=MS.gene71197.t1;Parent=MS.gene71197 |
chr8.3 | exon | 36302632 | 36302832 | 36302632 | ID=MS.gene71197.t1.exon1;Parent=MS.gene71197.t1 |
chr8.3 | CDS | 36302632 | 36302832 | 36302632 | ID=cds.MS.gene71197.t1;Parent=MS.gene71197.t1 |
chr8.3 | exon | 36301502 | 36301903 | 36301502 | ID=MS.gene71197.t1.exon2;Parent=MS.gene71197.t1 |
chr8.3 | CDS | 36301502 | 36301903 | 36301502 | ID=cds.MS.gene71197.t1;Parent=MS.gene71197.t1 |
chr8.3 | exon | 36300677 | 36300781 | 36300677 | ID=MS.gene71197.t1.exon3;Parent=MS.gene71197.t1 |
chr8.3 | CDS | 36300677 | 36300781 | 36300677 | ID=cds.MS.gene71197.t1;Parent=MS.gene71197.t1 |
Gene Sequence |
Protein sequence |