Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71200.t1 | XP_003628788.1 | 95.2 | 376 | 15 | 2 | 1 | 373 | 1 | 376 | 3.80E-158 | 567.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71200.t1 | Q9LQM3 | 68.6 | 385 | 93 | 10 | 7 | 373 | 10 | 384 | 9.6e-94 | 345.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71200.t1 | G7LH15 | 95.2 | 376 | 15 | 2 | 1 | 373 | 1 | 376 | 2.7e-158 | 567.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene71200.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71200.t1 | MTR_8g066730 | 98.404 | 376 | 3 | 2 | 1 | 373 | 1 | 376 | 0.0 | 749 |
| MS.gene71200.t1 | MTR_8g066730 | 96.886 | 289 | 6 | 2 | 1 | 286 | 1 | 289 | 0.0 | 562 |
| MS.gene71200.t1 | MTR_4g113860 | 30.612 | 294 | 141 | 9 | 79 | 371 | 76 | 307 | 3.51e-34 | 129 |
| MS.gene71200.t1 | MTR_4g113970 | 36.683 | 199 | 89 | 5 | 88 | 279 | 77 | 245 | 8.06e-34 | 126 |
| MS.gene71200.t1 | MTR_4g113940 | 27.246 | 345 | 154 | 7 | 34 | 371 | 16 | 270 | 1.91e-30 | 117 |
| MS.gene71200.t1 | MTR_3g050390 | 25.949 | 316 | 140 | 8 | 59 | 371 | 4 | 228 | 5.50e-26 | 105 |
| MS.gene71200.t1 | MTR_4g113890 | 36.975 | 119 | 46 | 2 | 79 | 197 | 56 | 145 | 1.12e-16 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71200.t1 | AT1G32360 | 60.560 | 393 | 121 | 13 | 3 | 373 | 4 | 384 | 1.90e-130 | 379 |
| MS.gene71200.t1 | AT3G19360 | 36.755 | 302 | 154 | 10 | 83 | 372 | 98 | 374 | 7.71e-46 | 161 |
| MS.gene71200.t1 | AT3G19360 | 36.755 | 302 | 154 | 10 | 83 | 372 | 98 | 374 | 7.71e-46 | 161 |
| MS.gene71200.t1 | AT2G35430 | 41.739 | 230 | 63 | 9 | 166 | 373 | 72 | 252 | 1.69e-41 | 146 |
| MS.gene71200.t1 | AT2G35430 | 38.012 | 171 | 68 | 7 | 25 | 190 | 31 | 168 | 4.00e-20 | 89.0 |
Find 126 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGTGGAGGAGGAGGAGG+TGG | 0.204425 | 8.3:-36320997 | MS.gene71200:CDS |
| GGTGGAGGTGGTGGAGGAGG+AGG | 0.223597 | 8.3:-36321003 | MS.gene71200:CDS |
| GGAGGTGGTGGAGGAGGAGG+AGG | 0.235103 | 8.3:-36321000 | MS.gene71200:CDS |
| TATGAATAATAGGTCTTATA+AGG | 0.235365 | 8.3:-36321157 | MS.gene71200:CDS |
| AAATTACAGTTCGTTATATA+AGG | 0.236720 | 8.3:+36321327 | None:intergenic |
| AGTTTAGGTCCTGGTGGTTA+TGG | 0.246502 | 8.3:-36321030 | MS.gene71200:CDS |
| GGTGGTGGAGGTGGTGGAGG+AGG | 0.265178 | 8.3:-36321006 | MS.gene71200:CDS |
| ACTGAGGAAGGTTGTCCTTA+TGG | 0.268283 | 8.3:-36321111 | MS.gene71200:CDS |
| TATGGTGGTGGTGGAGGTGG+TGG | 0.279719 | 8.3:-36321012 | MS.gene71200:CDS |
| CACATTATCAGCATGAGTTT+TGG | 0.299688 | 8.3:+36319451 | None:intergenic |
| GGTGGTGGTGGAGGTGGTGG+AGG | 0.301864 | 8.3:-36321009 | MS.gene71200:CDS |
| GGTTATGGTGGTGGTGGAGG+TGG | 0.308759 | 8.3:-36321015 | MS.gene71200:CDS |
| CAATTCGAAGGCTTCAAATT+AGG | 0.308899 | 8.3:+36320898 | None:intergenic |
| CAGATATGGAGGTGGGCTTA+TGG | 0.316746 | 8.3:-36319534 | MS.gene71200:CDS |
| GGTTCAGATGTTTATCATCT+TGG | 0.329111 | 8.3:-36319407 | MS.gene71200:CDS |
| GATAAAATCAGTAGGATATA+TGG | 0.337131 | 8.3:-36319311 | MS.gene71200:CDS |
| GAAAGTGTGGCGATTAGTTT+AGG | 0.346387 | 8.3:-36321045 | MS.gene71200:CDS |
| TTGGGGAGAGTATGAATAAT+AGG | 0.346414 | 8.3:-36321167 | MS.gene71200:CDS |
| CTAATTTGAAGCCTTCGAAT+TGG | 0.351114 | 8.3:-36320897 | MS.gene71200:CDS |
| TTCTGATGAGCTCTCTGTCC+TGG | 0.376334 | 8.3:+36319347 | None:intergenic |
| CAGCTGGTGCGGCCGCGGTT+GGG | 0.377275 | 8.3:-36320927 | MS.gene71200:CDS |
| GCAGCTGGTGCGGCCGCGGT+TGG | 0.388240 | 8.3:-36320928 | MS.gene71200:CDS |
| TACGTCGGCCGCCGGAGAAT+TGG | 0.393860 | 8.3:-36321284 | MS.gene71200:CDS |
| CTGTAGCACCATGAGCAAAA+TGG | 0.399102 | 8.3:+36320815 | None:intergenic |
| TGTAATAAGTGGGAGATGAC+TGG | 0.409320 | 8.3:-36320862 | MS.gene71200:CDS |
| GGTGGTTATGGTGGTGGTGG+AGG | 0.415973 | 8.3:-36321018 | MS.gene71200:CDS |
| GGTGCGGCCGCGGTTGGGAA+TGG | 0.416021 | 8.3:-36320922 | MS.gene71200:CDS |
| GGTGGTGGTGGCAGTGGAGG+AGG | 0.418521 | 8.3:-36321426 | MS.gene71200:CDS |
| ATGACTGGGTATTGTCCCTT+TGG | 0.419828 | 8.3:-36320847 | MS.gene71200:CDS |
| ATGAATAATAGGTCTTATAA+GGG | 0.419939 | 8.3:-36321156 | MS.gene71200:CDS |
| GGAGGAGGAGGTGGGAGTGT+TGG | 0.423488 | 8.3:-36320988 | MS.gene71200:CDS |
| TCGAATCGTGCGAAAGCGAT+TGG | 0.423638 | 8.3:-36321402 | MS.gene71200:CDS |
| CGGAAGATGAGTATCGTTAC+TGG | 0.423843 | 8.3:-36321545 | MS.gene71200:CDS |
| GGTGTTGTTGTTGTTGCAGC+TGG | 0.426984 | 8.3:-36320943 | MS.gene71200:CDS |
| ACTGCAGAATTACACAGATA+TGG | 0.430785 | 8.3:-36319548 | MS.gene71200:intron |
| GTTGGTAGTGTTGGTGGTAG+TGG | 0.432301 | 8.3:-36320970 | MS.gene71200:CDS |
| AATTACAGTTCGTTATATAA+GGG | 0.433972 | 8.3:+36321328 | None:intergenic |
| CAAGATGGTGGTGGTGGCAG+TGG | 0.435000 | 8.3:-36321432 | MS.gene71200:CDS |
| AAACTAGGATTTGTAATAAG+TGG | 0.442008 | 8.3:-36320873 | MS.gene71200:CDS |
| GGTGGGAGTGTTGGTAGTGT+TGG | 0.443949 | 8.3:-36320979 | MS.gene71200:CDS |
| TTGCTTCTCGATTTCTTACT+CGG | 0.445185 | 8.3:+36321459 | None:intergenic |
| AGCCTTCGAATTGGAAAACT+AGG | 0.448493 | 8.3:-36320888 | MS.gene71200:CDS |
| GGAGTGTGATTGAGCAGCCT+AGG | 0.450759 | 8.3:-36321230 | MS.gene71200:CDS |
| GATGGTGGTGGTGGCAGTGG+AGG | 0.455113 | 8.3:-36321429 | MS.gene71200:CDS |
| GGTCAACCGACCAAGCTGAC+TGG | 0.458039 | 8.3:-36321572 | MS.gene71200:CDS |
| GGGAGTGTTGGTAGTGTTGG+TGG | 0.465014 | 8.3:-36320976 | MS.gene71200:CDS |
| CGAATCGTGCGAAAGCGATT+GGG | 0.465049 | 8.3:-36321401 | MS.gene71200:CDS |
| GTGGTGGAGGAGGAGGAGGT+GGG | 0.465072 | 8.3:-36320996 | MS.gene71200:CDS |
| CCAACTATCGGCGGCTCCGC+CGG | 0.471165 | 8.3:+36321593 | None:intergenic |
| CCTGGTGGTTATGGTGGTGG+TGG | 0.482325 | 8.3:-36321021 | MS.gene71200:CDS |
| TGTTGCGTCTGACACAAAAC+AGG | 0.484755 | 8.3:-36319483 | MS.gene71200:CDS |
| AGTTTCAGATACCGACGGTT+GGG | 0.486443 | 8.3:-36321203 | MS.gene71200:CDS |
| GGTCCTGGTGGTTATGGTGG+TGG | 0.487385 | 8.3:-36321024 | MS.gene71200:CDS |
| CTTCCGTCGCCCAGTCAGCT+TGG | 0.490823 | 8.3:+36321562 | None:intergenic |
| TGTTGCAGCTGGTGCGGCCG+CGG | 0.493113 | 8.3:-36320932 | MS.gene71200:CDS |
| AACTAGGATTTGTAATAAGT+GGG | 0.496877 | 8.3:-36320872 | MS.gene71200:CDS |
| GTTGCATCAAATCCTCCTAC+TGG | 0.500963 | 8.3:-36319428 | MS.gene71200:CDS |
| AGTGTTGGTGGTAGTGGTAG+TGG | 0.513157 | 8.3:-36320964 | MS.gene71200:CDS |
| CGTCGCCCAGTCAGCTTGGT+CGG | 0.519038 | 8.3:+36321566 | None:intergenic |
| AAAGTACAACTATCTCCATA+AGG | 0.520248 | 8.3:+36321096 | None:intergenic |
| TCAGTAGGATATATGGCGAT+TGG | 0.521816 | 8.3:-36319304 | MS.gene71200:CDS |
| GTCAACCGACCAAGCTGACT+GGG | 0.522000 | 8.3:-36321571 | MS.gene71200:CDS |
| GTGGCGATTAGTTTAGGTCC+TGG | 0.524638 | 8.3:-36321039 | MS.gene71200:CDS |
| ACAATCTCCTGCCAATTCTC+CGG | 0.526020 | 8.3:+36321273 | None:intergenic |
| CCGGCGGAGCCGCCGATAGT+TGG | 0.526889 | 8.3:-36321593 | MS.gene71200:CDS |
| CAATGGAAGGTCTTTGTGAA+GGG | 0.529629 | 8.3:+36319381 | None:intergenic |
| GGAGAATTGGCAGGAGATTG+TGG | 0.530968 | 8.3:-36321271 | MS.gene71200:CDS |
| CCGTCTTCAAATTCACGTGC+AGG | 0.538664 | 8.3:-36321492 | MS.gene71200:CDS |
| AAAATGGCATTTGTTACCAA+AGG | 0.546912 | 8.3:+36320831 | None:intergenic |
| GACAGAGAGCTCATCAGAAG+TGG | 0.547469 | 8.3:-36319343 | MS.gene71200:CDS |
| TCGGCCGCCGGAGAATTGGC+AGG | 0.548725 | 8.3:-36321280 | MS.gene71200:CDS |
| ACTATCGGCGGCTCCGCCGG+TGG | 0.550887 | 8.3:+36321596 | None:intergenic |
| GGTATCTGAAACTCCTCCCT+AGG | 0.552310 | 8.3:+36321213 | None:intergenic |
| GGCCTCTGACTCACAATGGA+AGG | 0.553370 | 8.3:+36319368 | None:intergenic |
| TCGAGAAGCAATTCGCAAGA+TGG | 0.554276 | 8.3:-36321447 | MS.gene71200:CDS |
| TTAGGTCCTGGTGGTTATGG+TGG | 0.556983 | 8.3:-36321027 | MS.gene71200:CDS |
| GAGTGTGATTGAGCAGCCTA+GGG | 0.557000 | 8.3:-36321229 | MS.gene71200:CDS |
| AAATGGCATTTGTTACCAAA+GGG | 0.557541 | 8.3:+36320832 | None:intergenic |
| GTAATAAGTGGGAGATGACT+GGG | 0.557999 | 8.3:-36320861 | MS.gene71200:CDS |
| AATTCGCAAGATGGTGGTGG+TGG | 0.565492 | 8.3:-36321438 | MS.gene71200:CDS |
| TCCATTGTGAGTCAGAGGCC+AGG | 0.568730 | 8.3:-36319365 | MS.gene71200:CDS |
| TTATGCTGCAAGTTTCGTGT+GGG | 0.573709 | 8.3:-36321357 | MS.gene71200:CDS |
| GGAGGAGCTACGTCGGCCGC+CGG | 0.573942 | 8.3:-36321292 | MS.gene71200:CDS |
| TACTGGAACGGAAACGACGC+CGG | 0.576258 | 8.3:-36321528 | MS.gene71200:CDS |
| GACCTTCCATTGTGAGTCAG+AGG | 0.580448 | 8.3:-36319370 | MS.gene71200:CDS |
| AGACGGAGTTGTTTCACCGC+CGG | 0.582371 | 8.3:+36321509 | None:intergenic |
| TATGGAGGTGGGCTTATGGA+AGG | 0.583879 | 8.3:-36319530 | MS.gene71200:CDS |
| ATTATGCTGCAAGTTTCGTG+TGG | 0.588794 | 8.3:-36321358 | MS.gene71200:CDS |
| AGCAATTCGCAAGATGGTGG+TGG | 0.591086 | 8.3:-36321441 | MS.gene71200:CDS |
| GAATTACACAGATATGGAGG+TGG | 0.593880 | 8.3:-36319542 | MS.gene71200:CDS |
| ACAATGGAAGGTCTTTGTGA+AGG | 0.593936 | 8.3:+36319380 | None:intergenic |
| TCCTGGCCTCTGACTCACAA+TGG | 0.594508 | 8.3:+36319364 | None:intergenic |
| TGTTGTTGTTGCAGCTGGTG+CGG | 0.594830 | 8.3:-36320938 | MS.gene71200:CDS |
| CGACCAAGCTGACTGGGCGA+CGG | 0.595148 | 8.3:-36321565 | MS.gene71200:CDS |
| GATGAGTATCGTTACTGGAA+CGG | 0.598603 | 8.3:-36321540 | MS.gene71200:CDS |
| CAAAACTCATGCTGATAATG+TGG | 0.598802 | 8.3:-36319450 | MS.gene71200:CDS |
| GTCGTTCAAATCATCACCAC+CGG | 0.600321 | 8.3:-36321612 | MS.gene71200:CDS |
| CCACCACCACCATAACCACC+AGG | 0.606081 | 8.3:+36321021 | None:intergenic |
| AGAGCTCATCAGAAGTGGAA+AGG | 0.606297 | 8.3:-36319338 | MS.gene71200:CDS |
| GAGTTTCAGATACCGACGGT+TGG | 0.612303 | 8.3:-36321204 | MS.gene71200:CDS |
| AAAGTACTCGACCCAACCGT+CGG | 0.614579 | 8.3:+36321192 | None:intergenic |
| CCTGCACGTGAATTTGAAGA+CGG | 0.617302 | 8.3:+36321492 | None:intergenic |
| ATCGAAGAATCGTGAAAGTG+TGG | 0.618402 | 8.3:-36321058 | MS.gene71200:CDS |
| AAGGTCCCGATAAAATCAGT+AGG | 0.622761 | 8.3:-36319319 | MS.gene71200:CDS |
| GGAGGAGTTTCAGATACCGA+CGG | 0.623970 | 8.3:-36321208 | MS.gene71200:CDS |
| TGTGATTGAGCAGCCTAGGG+AGG | 0.629299 | 8.3:-36321226 | MS.gene71200:CDS |
| TTGGTCGGTTGACCAACTAT+CGG | 0.633102 | 8.3:+36321581 | None:intergenic |
| TAAACATCTGAACCAGTAGG+AGG | 0.634383 | 8.3:+36319416 | None:intergenic |
| AATTACACAGATATGGAGGT+GGG | 0.635355 | 8.3:-36319541 | MS.gene71200:CDS |
| AGAAGCAATTCGCAAGATGG+TGG | 0.638549 | 8.3:-36321444 | MS.gene71200:CDS |
| TGATAAACATCTGAACCAGT+AGG | 0.638955 | 8.3:+36319413 | None:intergenic |
| TGAATAATAGGTCTTATAAG+GGG | 0.644881 | 8.3:-36321155 | MS.gene71200:CDS |
| TGGCTGCTCATGAAGAAGAG+AGG | 0.650335 | 8.3:-36321251 | MS.gene71200:CDS |
| ACAATGGATTACAACAGAGA+CGG | 0.651622 | 8.3:-36321639 | MS.gene71200:CDS |
| ATGGAAGGAGAAAGCAGAGA+CGG | 0.651866 | 8.3:-36319515 | MS.gene71200:CDS |
| ATCTCCTGCCAATTCTCCGG+CGG | 0.654680 | 8.3:+36321276 | None:intergenic |
| GCGATTAGTTTAGGTCCTGG+TGG | 0.657986 | 8.3:-36321036 | MS.gene71200:CDS |
| TATGCTGCAAGTTTCGTGTG+GGG | 0.660211 | 8.3:-36321356 | MS.gene71200:CDS |
| TGGAACGGAAACGACGCCGG+CGG | 0.668874 | 8.3:-36321525 | MS.gene71200:CDS |
| GCAGAATTACACAGATATGG+AGG | 0.676863 | 8.3:-36319545 | MS.gene71200:intron |
| GTTCAAATCATCACCACCGG+CGG | 0.687955 | 8.3:-36321609 | MS.gene71200:CDS |
| ATTAGGTCCATTCCCAACCG+CGG | 0.701157 | 8.3:+36320915 | None:intergenic |
| CTTCTCGATTTCTTACTCGG+CGG | 0.702870 | 8.3:+36321462 | None:intergenic |
| ATAGTGTGGAGGAGCTACGT+CGG | 0.704848 | 8.3:-36321299 | MS.gene71200:CDS |
| GTCGGTTGACCAACTATCGG+CGG | 0.708168 | 8.3:+36321584 | None:intergenic |
| GTTGCGTCTGACACAAAACA+GGG | 0.785414 | 8.3:-36319482 | MS.gene71200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTAAAGATTTTAATTTTA+TGG | - | chr8.3:36320171-36320190 | MS.gene71200:intron | 10.0% |
| !!! | TTTTAATTTTATGGTAATTG+AGG | - | chr8.3:36320180-36320199 | MS.gene71200:intron | 15.0% |
| !! | AAATTACAGTTCGTTATATA+AGG | + | chr8.3:36319598-36319617 | None:intergenic | 20.0% |
| !! | AATTACAGTTCGTTATATAA+GGG | + | chr8.3:36319597-36319616 | None:intergenic | 20.0% |
| !! | ACATAACAAAATCATCAAAA+TGG | + | chr8.3:36320145-36320164 | None:intergenic | 20.0% |
| !!! | ATATATCCTACTGATTTTAT+CGG | + | chr8.3:36321612-36321631 | None:intergenic | 20.0% |
| !!! | ATGAATAATAGGTCTTATAA+GGG | - | chr8.3:36319766-36319785 | MS.gene71200:intron | 20.0% |
| !!! | GGTTTTTTCTTCATTTAATA+TGG | - | chr8.3:36320352-36320371 | MS.gene71200:intron | 20.0% |
| !!! | TATGAATAATAGGTCTTATA+AGG | - | chr8.3:36319765-36319784 | MS.gene71200:intron | 20.0% |
| !!! | TTGTAAGAAATTTTATACTG+AGG | - | chr8.3:36319795-36319814 | MS.gene71200:intron | 20.0% |
| ! | AAAATGTATATGTGCATGTT+TGG | + | chr8.3:36321238-36321257 | None:intergenic | 25.0% |
| ! | AAACTAGGATTTGTAATAAG+TGG | - | chr8.3:36320049-36320068 | MS.gene71200:intron | 25.0% |
| ! | AACTAGGATTTGTAATAAGT+GGG | - | chr8.3:36320050-36320069 | MS.gene71200:intron | 25.0% |
| ! | AAGAAAAAACCAATCTTGTA+TGG | + | chr8.3:36320343-36320362 | None:intergenic | 25.0% |
| ! | ATGAAAAGTAATCGCAAAAA+AGG | + | chr8.3:36320731-36320750 | None:intergenic | 25.0% |
| ! | GATAAAATCAGTAGGATATA+TGG | - | chr8.3:36321611-36321630 | MS.gene71200:CDS | 25.0% |
| !! | AAGAAATTTTATACTGAGGA+AGG | - | chr8.3:36319799-36319818 | MS.gene71200:intron | 25.0% |
| !! | ATTTGAATTTGAAGCATACA+AGG | + | chr8.3:36320757-36320776 | None:intergenic | 25.0% |
| !! | GTTATAAATAGTTTGTGTTG+TGG | - | chr8.3:36320252-36320271 | MS.gene71200:intron | 25.0% |
| !! | TACCTTTTGGATACAATTTT+GGG | - | chr8.3:36320294-36320313 | MS.gene71200:intron | 25.0% |
| !! | TCTTTTTATCCATACAAGAT+TGG | - | chr8.3:36320331-36320350 | MS.gene71200:intron | 25.0% |
| !! | TGAATAATAGGTCTTATAAG+GGG | - | chr8.3:36319767-36319786 | MS.gene71200:intron | 25.0% |
| !! | TTACCTTTTGGATACAATTT+TGG | - | chr8.3:36320293-36320312 | MS.gene71200:intron | 25.0% |
| !! | TTTTCATTGTGCAAAACATA+AGG | + | chr8.3:36320623-36320642 | None:intergenic | 25.0% |
| !! | TTTTCTTAATCAGAAAGTGA+AGG | + | chr8.3:36320787-36320806 | None:intergenic | 25.0% |
| !!! | ATAGAAAGTGCTATTAGAAT+TGG | - | chr8.3:36320226-36320245 | MS.gene71200:intron | 25.0% |
| !!! | GATGATTTTGTTATGTGAAT+TGG | - | chr8.3:36320149-36320168 | MS.gene71200:intron | 25.0% |
| !!! | TATATCCTACTGATTTTATC+GGG | + | chr8.3:36321611-36321630 | None:intergenic | 25.0% |
| AAACATGCACATAATGAACA+AGG | + | chr8.3:36321092-36321111 | None:intergenic | 30.0% | |
| AAAGTACAACTATCTCCATA+AGG | + | chr8.3:36319829-36319848 | None:intergenic | 30.0% | |
| ACCAAAACAAAATTGACACT+AGG | + | chr8.3:36320432-36320451 | None:intergenic | 30.0% | |
| ACTGTAAACCAAAAAACACT+TGG | + | chr8.3:36320704-36320723 | None:intergenic | 30.0% | |
| ACTTTCATTGCTTTGATGTT+TGG | - | chr8.3:36321066-36321085 | MS.gene71200:CDS | 30.0% | |
| ATTGCATAGATTACTCAAGT+CGG | + | chr8.3:36320539-36320558 | None:intergenic | 30.0% | |
| CCAAAACAAAATTGACACTA+GGG | + | chr8.3:36320431-36320450 | None:intergenic | 30.0% | |
| GAAAAGAATAGTTTCATGAG+TGG | - | chr8.3:36320827-36320846 | MS.gene71200:CDS | 30.0% | |
| GGCTTAAATTGATTATCTGT+CGG | - | chr8.3:36321297-36321316 | MS.gene71200:CDS | 30.0% | |
| TGATATGTAGTATGTGAATG+TGG | - | chr8.3:36320478-36320497 | MS.gene71200:intron | 30.0% | |
| TTCCCAAAATTGTATCCAAA+AGG | + | chr8.3:36320299-36320318 | None:intergenic | 30.0% | |
| TTGTTCATTATGTGCATGTT+TGG | - | chr8.3:36321091-36321110 | MS.gene71200:CDS | 30.0% | |
| ! | AAAATGGCATTTGTTACCAA+AGG | + | chr8.3:36320094-36320113 | None:intergenic | 30.0% |
| ! | AAATGGCATTTGTTACCAAA+GGG | + | chr8.3:36320093-36320112 | None:intergenic | 30.0% |
| ! | TTGATACACGAGTGTTTTAT+TGG | - | chr8.3:36321276-36321295 | MS.gene71200:CDS | 30.0% |
| !!! | GCAAATTTCCAAGTGTTTTT+TGG | - | chr8.3:36320693-36320712 | MS.gene71200:intron | 30.0% |
| !!! | TTTTGTTTTGGTTGATGCTA+AGG | - | chr8.3:36320440-36320459 | MS.gene71200:intron | 30.0% |
| AAGAATAGTTTCATGAGTGG+TGG | - | chr8.3:36320830-36320849 | MS.gene71200:CDS | 35.0% | |
| AATTACACAGATATGGAGGT+GGG | - | chr8.3:36321381-36321400 | MS.gene71200:CDS | 35.0% | |
| ACTGCAGAATTACACAGATA+TGG | - | chr8.3:36321374-36321393 | MS.gene71200:CDS | 35.0% | |
| AGAATAGTTTCATGAGTGGT+GGG | - | chr8.3:36320831-36320850 | MS.gene71200:CDS | 35.0% | |
| CAATTCGAAGGCTTCAAATT+AGG | + | chr8.3:36320027-36320046 | None:intergenic | 35.0% | |
| CATTGTGCAAAACATAAGGA+AGG | + | chr8.3:36320619-36320638 | None:intergenic | 35.0% | |
| GGTTCAGATGTTTATCATCT+TGG | - | chr8.3:36321515-36321534 | MS.gene71200:CDS | 35.0% | |
| TATGTGCATGTTTGGATTGA+CGG | - | chr8.3:36321099-36321118 | MS.gene71200:CDS | 35.0% | |
| TGATAAACATCTGAACCAGT+AGG | + | chr8.3:36321512-36321531 | None:intergenic | 35.0% | |
| TGTACTTAATCGCATATTCG+TGG | + | chr8.3:36320955-36320974 | None:intergenic | 35.0% | |
| TGTTGTCAAATAGCGTCTAT+AGG | - | chr8.3:36320978-36320997 | MS.gene71200:CDS | 35.0% | |
| TTGCTTCTCGATTTCTTACT+CGG | + | chr8.3:36319466-36319485 | None:intergenic | 35.0% | |
| ! | CAAAACTCATGCTGATAATG+TGG | - | chr8.3:36321472-36321491 | MS.gene71200:CDS | 35.0% |
| ! | CACATTATCAGCATGAGTTT+TGG | + | chr8.3:36321474-36321493 | None:intergenic | 35.0% |
| ! | CTAATTTGAAGCCTTCGAAT+TGG | - | chr8.3:36320025-36320044 | MS.gene71200:intron | 35.0% |
| ! | CTGTAATTTTGCTCATAGTG+TGG | - | chr8.3:36319609-36319628 | MS.gene71200:intron | 35.0% |
| ! | TAATTTTGCTCATAGTGTGG+AGG | - | chr8.3:36319612-36319631 | MS.gene71200:intron | 35.0% |
| ! | TTGGGGAGAGTATGAATAAT+AGG | - | chr8.3:36319755-36319774 | MS.gene71200:intron | 35.0% |
| !! | ATCCTAGTTTTCCAATTCGA+AGG | + | chr8.3:36320039-36320058 | None:intergenic | 35.0% |
| !! | CCCTAGTGTCAATTTTGTTT+TGG | - | chr8.3:36320428-36320447 | MS.gene71200:intron | 35.0% |
| !!! | AACAAATGCCATTTTGCTCA+TGG | - | chr8.3:36320099-36320118 | MS.gene71200:intron | 35.0% |
| !!! | TTATCAGCATGAGTTTTGGA+AGG | + | chr8.3:36321470-36321489 | None:intergenic | 35.0% |
| AAGGTCCCGATAAAATCAGT+AGG | - | chr8.3:36321603-36321622 | MS.gene71200:CDS | 40.0% | |
| ACAATGGAAGGTCTTTGTGA+AGG | + | chr8.3:36321545-36321564 | None:intergenic | 40.0% | |
| AGACTGGCATGACATAATCA+TGG | + | chr8.3:36321205-36321224 | None:intergenic | 40.0% | |
| AGCCTTCGAATTGGAAAACT+AGG | - | chr8.3:36320034-36320053 | MS.gene71200:intron | 40.0% | |
| ATCGAAGAATCGTGAAAGTG+TGG | - | chr8.3:36319864-36319883 | MS.gene71200:intron | 40.0% | |
| ATTATGCTGCAAGTTTCGTG+TGG | - | chr8.3:36319564-36319583 | MS.gene71200:intron | 40.0% | |
| CAATGGAAGGTCTTTGTGAA+GGG | + | chr8.3:36321544-36321563 | None:intergenic | 40.0% | |
| GAATTACACAGATATGGAGG+TGG | - | chr8.3:36321380-36321399 | MS.gene71200:CDS | 40.0% | |
| GCAGAATTACACAGATATGG+AGG | - | chr8.3:36321377-36321396 | MS.gene71200:CDS | 40.0% | |
| GTAATAAGTGGGAGATGACT+GGG | - | chr8.3:36320061-36320080 | MS.gene71200:intron | 40.0% | |
| TAAACATCTGAACCAGTAGG+AGG | + | chr8.3:36321509-36321528 | None:intergenic | 40.0% | |
| TATGTGCATGTTTGGATCGA+CGG | + | chr8.3:36321230-36321249 | None:intergenic | 40.0% | |
| TCAGTAGGATATATGGCGAT+TGG | - | chr8.3:36321618-36321637 | MS.gene71200:CDS | 40.0% | |
| TGTAATAAGTGGGAGATGAC+TGG | - | chr8.3:36320060-36320079 | MS.gene71200:intron | 40.0% | |
| TTATGCTGCAAGTTTCGTGT+GGG | - | chr8.3:36319565-36319584 | MS.gene71200:intron | 40.0% | |
| ! | CTCTTTTTGTGATCCGCAAT+CGG | - | chr8.3:36321037-36321056 | MS.gene71200:CDS | 40.0% |
| ! | GATGAGTATCGTTACTGGAA+CGG | - | chr8.3:36319382-36319401 | MS.gene71200:CDS | 40.0% |
| ! | GGCAGTGTTTTCTTACCTTT+TGG | - | chr8.3:36320281-36320300 | MS.gene71200:intron | 40.0% |
| ! | TAGTTTGTGTTGTGGAGTTG+TGG | - | chr8.3:36320260-36320279 | MS.gene71200:intron | 40.0% |
| ! | TGAAAGTATGTTGCCGATTG+CGG | + | chr8.3:36321053-36321072 | None:intergenic | 40.0% |
| ! | TTGGGTCGAGTACTTTTGTT+GGG | - | chr8.3:36319737-36319756 | MS.gene71200:intron | 40.0% |
| !! | GAAAGTGTGGCGATTAGTTT+AGG | - | chr8.3:36319877-36319896 | MS.gene71200:intron | 40.0% |
| ACAATCTCCTGCCAATTCTC+CGG | + | chr8.3:36319652-36319671 | None:intergenic | 45.0% | |
| ACTGAGGAAGGTTGTCCTTA+TGG | - | chr8.3:36319811-36319830 | MS.gene71200:intron | 45.0% | |
| AGAAGCAATTCGCAAGATGG+TGG | - | chr8.3:36319478-36319497 | MS.gene71200:CDS | 45.0% | |
| AGAGCTCATCAGAAGTGGAA+AGG | - | chr8.3:36321584-36321603 | MS.gene71200:CDS | 45.0% | |
| AGTTTAGGTCCTGGTGGTTA+TGG | - | chr8.3:36319892-36319911 | MS.gene71200:intron | 45.0% | |
| AGTTTCAGATACCGACGGTT+GGG | - | chr8.3:36319719-36319738 | MS.gene71200:intron | 45.0% | |
| ATGGAAGGAGAAAGCAGAGA+CGG | - | chr8.3:36321407-36321426 | MS.gene71200:CDS | 45.0% | |
| ATTGACACTAGGGACAATGC+AGG | + | chr8.3:36320421-36320440 | None:intergenic | 45.0% | |
| CCTGCACGTGAATTTGAAGA+CGG | + | chr8.3:36319433-36319452 | None:intergenic | 45.0% | |
| CTGTAGCACCATGAGCAAAA+TGG | + | chr8.3:36320110-36320129 | None:intergenic | 45.0% | |
| CTTCTCGATTTCTTACTCGG+CGG | + | chr8.3:36319463-36319482 | None:intergenic | 45.0% | |
| GTCGTTCAAATCATCACCAC+CGG | - | chr8.3:36319310-36319329 | MS.gene71200:CDS | 45.0% | |
| GTTGCATCAAATCCTCCTAC+TGG | - | chr8.3:36321494-36321513 | MS.gene71200:CDS | 45.0% | |
| GTTGCGTCTGACACAAAACA+GGG | - | chr8.3:36321440-36321459 | MS.gene71200:CDS | 45.0% | |
| TAGGATAGCACAGTACGTAG+TGG | - | chr8.3:36320997-36321016 | MS.gene71200:CDS | 45.0% | |
| TATGCTGCAAGTTTCGTGTG+GGG | - | chr8.3:36319566-36319585 | MS.gene71200:intron | 45.0% | |
| TCGAGAAGCAATTCGCAAGA+TGG | - | chr8.3:36319475-36319494 | MS.gene71200:CDS | 45.0% | |
| TGTTGCGTCTGACACAAAAC+AGG | - | chr8.3:36321439-36321458 | MS.gene71200:CDS | 45.0% | |
| TTGACACTAGGGACAATGCA+GGG | + | chr8.3:36320420-36320439 | None:intergenic | 45.0% | |
| TTGGTCGGTTGACCAACTAT+CGG | + | chr8.3:36319344-36319363 | None:intergenic | 45.0% | |
| ! | ATGACTGGGTATTGTCCCTT+TGG | - | chr8.3:36320075-36320094 | MS.gene71200:intron | 45.0% |
| ! | CGGAAGATGAGTATCGTTAC+TGG | - | chr8.3:36319377-36319396 | MS.gene71200:CDS | 45.0% |
| ! | GGTGGGTTCAGAATGAAAGA+TGG | - | chr8.3:36320848-36320867 | MS.gene71200:CDS | 45.0% |
| ! | GTTGGGTCGAGTACTTTTGT+TGG | - | chr8.3:36319736-36319755 | MS.gene71200:intron | 45.0% |
| ! | TGGGTCGAGTACTTTTGTTG+GGG | - | chr8.3:36319738-36319757 | MS.gene71200:intron | 45.0% |
| !!! | CATTTTGCTCATGGTGCTAC+AGG | - | chr8.3:36320108-36320127 | MS.gene71200:intron | 45.0% |
| ATAGTGTGGAGGAGCTACGT+CGG | - | chr8.3:36319623-36319642 | MS.gene71200:intron | 50.0% | |
| ATTAGGTCCATTCCCAACCG+CGG | + | chr8.3:36320010-36320029 | None:intergenic | 50.0% | |
| CCGTCTTCAAATTCACGTGC+AGG | - | chr8.3:36319430-36319449 | MS.gene71200:CDS | 50.0% | |
| CGAATCGTGCGAAAGCGATT+GGG | - | chr8.3:36319521-36319540 | MS.gene71200:CDS | 50.0% | |
| GACAGAGAGCTCATCAGAAG+TGG | - | chr8.3:36321579-36321598 | MS.gene71200:CDS | 50.0% | |
| GACCTTCCATTGTGAGTCAG+AGG | - | chr8.3:36321552-36321571 | MS.gene71200:CDS | 50.0% | |
| GAGTGTGATTGAGCAGCCTA+GGG | - | chr8.3:36319693-36319712 | MS.gene71200:intron | 50.0% | |
| GAGTTTCAGATACCGACGGT+TGG | - | chr8.3:36319718-36319737 | MS.gene71200:intron | 50.0% | |
| GGAGAATTGGCAGGAGATTG+TGG | - | chr8.3:36319651-36319670 | MS.gene71200:intron | 50.0% | |
| GGAGGAGTTTCAGATACCGA+CGG | - | chr8.3:36319714-36319733 | MS.gene71200:intron | 50.0% | |
| GTTCAAATCATCACCACCGG+CGG | - | chr8.3:36319313-36319332 | MS.gene71200:CDS | 50.0% | |
| TCGAATCGTGCGAAAGCGAT+TGG | - | chr8.3:36319520-36319539 | MS.gene71200:CDS | 50.0% | |
| TGGCTGCTCATGAAGAAGAG+AGG | - | chr8.3:36319671-36319690 | MS.gene71200:intron | 50.0% | |
| TTAGGTCCTGGTGGTTATGG+TGG | - | chr8.3:36319895-36319914 | MS.gene71200:intron | 50.0% | |
| TTCTGATGAGCTCTCTGTCC+TGG | + | chr8.3:36321578-36321597 | None:intergenic | 50.0% | |
| ! | AAAGTACTCGACCCAACCGT+CGG | + | chr8.3:36319733-36319752 | None:intergenic | 50.0% |
| ! | AGCAATTCGCAAGATGGTGG+TGG | - | chr8.3:36319481-36319500 | MS.gene71200:CDS | 50.0% |
| ! | CAGATATGGAGGTGGGCTTA+TGG | - | chr8.3:36321388-36321407 | MS.gene71200:CDS | 50.0% |
| ! | GGTATCTGAAACTCCTCCCT+AGG | + | chr8.3:36319712-36319731 | None:intergenic | 50.0% |
| ! | TATGGAGGTGGGCTTATGGA+AGG | - | chr8.3:36321392-36321411 | MS.gene71200:CDS | 50.0% |
| ! | TGTTGTTGTTGCAGCTGGTG+CGG | - | chr8.3:36319984-36320003 | MS.gene71200:intron | 50.0% |
| !! | AATTCGCAAGATGGTGGTGG+TGG | - | chr8.3:36319484-36319503 | MS.gene71200:CDS | 50.0% |
| !! | AGTGTTGGTGGTAGTGGTAG+TGG | - | chr8.3:36319958-36319977 | MS.gene71200:intron | 50.0% |
| !! | GCGATTAGTTTAGGTCCTGG+TGG | - | chr8.3:36319886-36319905 | MS.gene71200:intron | 50.0% |
| !! | GGTGTTGTTGTTGTTGCAGC+TGG | - | chr8.3:36319979-36319998 | MS.gene71200:intron | 50.0% |
| !! | GTGGCGATTAGTTTAGGTCC+TGG | - | chr8.3:36319883-36319902 | MS.gene71200:intron | 50.0% |
| !! | GTTGGTAGTGTTGGTGGTAG+TGG | - | chr8.3:36319952-36319971 | MS.gene71200:intron | 50.0% |
| AGTGCTACAGCGCTATCGTG+TGG | - | chr8.3:36320903-36320922 | MS.gene71200:CDS | 55.0% | |
| ATCTCCTGCCAATTCTCCGG+CGG | + | chr8.3:36319649-36319668 | None:intergenic | 55.0% | |
| CGAGTTTAGCGAAATCGCGG+TGG | - | chr8.3:36321122-36321141 | MS.gene71200:CDS | 55.0% | |
| CGGCGAGTTTAGCGAAATCG+CGG | - | chr8.3:36321119-36321138 | MS.gene71200:CDS | 55.0% | |
| GGAGTGTGATTGAGCAGCCT+AGG | - | chr8.3:36319692-36319711 | MS.gene71200:intron | 55.0% | |
| GGCCTCTGACTCACAATGGA+AGG | + | chr8.3:36321557-36321576 | None:intergenic | 55.0% | |
| GTCAACCGACCAAGCTGACT+GGG | - | chr8.3:36319351-36319370 | MS.gene71200:CDS | 55.0% | |
| GTCGGTTGACCAACTATCGG+CGG | + | chr8.3:36319341-36319360 | None:intergenic | 55.0% | |
| GTTTGGATCGACGGTGAGAC+TGG | + | chr8.3:36321221-36321240 | None:intergenic | 55.0% | |
| TACTGGAACGGAAACGACGC+CGG | - | chr8.3:36319394-36319413 | MS.gene71200:CDS | 55.0% | |
| TCCATTGTGAGTCAGAGGCC+AGG | - | chr8.3:36321557-36321576 | MS.gene71200:CDS | 55.0% | |
| TCCTGGCCTCTGACTCACAA+TGG | + | chr8.3:36321561-36321580 | None:intergenic | 55.0% | |
| TGTGATTGAGCAGCCTAGGG+AGG | - | chr8.3:36319696-36319715 | MS.gene71200:intron | 55.0% | |
| ! | AGACGGAGTTGTTTCACCGC+CGG | + | chr8.3:36319416-36319435 | None:intergenic | 55.0% |
| !! | GGGAGTGTTGGTAGTGTTGG+TGG | - | chr8.3:36319946-36319965 | MS.gene71200:intron | 55.0% |
| !! | GGTGGGAGTGTTGGTAGTGT+TGG | - | chr8.3:36319943-36319962 | MS.gene71200:intron | 55.0% |
| CCACCACCACCATAACCACC+AGG | + | chr8.3:36319904-36319923 | None:intergenic | 60.0% | |
| GGTCAACCGACCAAGCTGAC+TGG | - | chr8.3:36319350-36319369 | MS.gene71200:CDS | 60.0% | |
| GGTCCTGGTGGTTATGGTGG+TGG | - | chr8.3:36319898-36319917 | MS.gene71200:intron | 60.0% | |
| !! | CAAGATGGTGGTGGTGGCAG+TGG | - | chr8.3:36319490-36319509 | MS.gene71200:CDS | 60.0% |
| !! | CCTGGTGGTTATGGTGGTGG+TGG | - | chr8.3:36319901-36319920 | MS.gene71200:intron | 60.0% |
| !! | GGTGGTTATGGTGGTGGTGG+AGG | - | chr8.3:36319904-36319923 | MS.gene71200:intron | 60.0% |
| !! | GGTTATGGTGGTGGTGGAGG+TGG | - | chr8.3:36319907-36319926 | MS.gene71200:intron | 60.0% |
| !! | TATGGTGGTGGTGGAGGTGG+TGG | - | chr8.3:36319910-36319929 | MS.gene71200:intron | 60.0% |
| CGACCAAGCTGACTGGGCGA+CGG | - | chr8.3:36319357-36319376 | MS.gene71200:CDS | 65.0% | |
| CGTCGCCCAGTCAGCTTGGT+CGG | + | chr8.3:36319359-36319378 | None:intergenic | 65.0% | |
| CTTCCGTCGCCCAGTCAGCT+TGG | + | chr8.3:36319363-36319382 | None:intergenic | 65.0% | |
| TACGTCGGCCGCCGGAGAAT+TGG | - | chr8.3:36319638-36319657 | MS.gene71200:intron | 65.0% | |
| TGGAACGGAAACGACGCCGG+CGG | - | chr8.3:36319397-36319416 | MS.gene71200:CDS | 65.0% | |
| ! | GGAGGAGGAGGTGGGAGTGT+TGG | - | chr8.3:36319934-36319953 | MS.gene71200:intron | 65.0% |
| ! | GTGGTGGAGGAGGAGGAGGT+GGG | - | chr8.3:36319926-36319945 | MS.gene71200:intron | 65.0% |
| !! | GATGGTGGTGGTGGCAGTGG+AGG | - | chr8.3:36319493-36319512 | MS.gene71200:CDS | 65.0% |
| CCAACTATCGGCGGCTCCGC+CGG | + | chr8.3:36319332-36319351 | None:intergenic | 70.0% | |
| TCGGCCGCCGGAGAATTGGC+AGG | - | chr8.3:36319642-36319661 | MS.gene71200:intron | 70.0% | |
| TGTTGCAGCTGGTGCGGCCG+CGG | - | chr8.3:36319990-36320009 | MS.gene71200:intron | 70.0% | |
| !! | GGAGGTGGTGGAGGAGGAGG+AGG | - | chr8.3:36319922-36319941 | MS.gene71200:intron | 70.0% |
| !! | GGTGGAGGTGGTGGAGGAGG+AGG | - | chr8.3:36319919-36319938 | MS.gene71200:intron | 70.0% |
| !! | GGTGGTGGAGGAGGAGGAGG+TGG | - | chr8.3:36319925-36319944 | MS.gene71200:intron | 70.0% |
| !! | GGTGGTGGAGGTGGTGGAGG+AGG | - | chr8.3:36319916-36319935 | MS.gene71200:intron | 70.0% |
| !! | GGTGGTGGTGGAGGTGGTGG+AGG | - | chr8.3:36319913-36319932 | MS.gene71200:intron | 70.0% |
| !! | GGTGGTGGTGGCAGTGGAGG+AGG | - | chr8.3:36319496-36319515 | MS.gene71200:CDS | 70.0% |
| ACTATCGGCGGCTCCGCCGG+TGG | + | chr8.3:36319329-36319348 | None:intergenic | 75.0% | |
| CAGCTGGTGCGGCCGCGGTT+GGG | - | chr8.3:36319995-36320014 | MS.gene71200:intron | 75.0% | |
| CCGGCGGAGCCGCCGATAGT+TGG | - | chr8.3:36319329-36319348 | MS.gene71200:CDS | 75.0% | |
| GGAGGAGCTACGTCGGCCGC+CGG | - | chr8.3:36319630-36319649 | MS.gene71200:intron | 75.0% | |
| GGTGCGGCCGCGGTTGGGAA+TGG | - | chr8.3:36320000-36320019 | MS.gene71200:intron | 75.0% | |
| ! | GCAGCTGGTGCGGCCGCGGT+TGG | - | chr8.3:36319994-36320013 | MS.gene71200:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 36319286 | 36321658 | 36319286 | ID=MS.gene71200 |
| chr8.3 | mRNA | 36319286 | 36321658 | 36319286 | ID=MS.gene71200.t1;Parent=MS.gene71200 |
| chr8.3 | exon | 36320815 | 36321658 | 36320815 | ID=MS.gene71200.t1.exon1;Parent=MS.gene71200.t1 |
| chr8.3 | CDS | 36320815 | 36321658 | 36320815 | ID=cds.MS.gene71200.t1;Parent=MS.gene71200.t1 |
| chr8.3 | exon | 36319286 | 36319563 | 36319286 | ID=MS.gene71200.t1.exon2;Parent=MS.gene71200.t1 |
| chr8.3 | CDS | 36319286 | 36319563 | 36319286 | ID=cds.MS.gene71200.t1;Parent=MS.gene71200.t1 |
| Gene Sequence |
| Protein sequence |
