Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71281.t1 | XP_004509108.1 | 90.9 | 55 | 5 | 0 | 1 | 55 | 256 | 310 | 1.30E-21 | 112.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71281.t1 | O22176 | 81.8 | 55 | 10 | 0 | 1 | 55 | 235 | 289 | 1.0e-22 | 107.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71281.t1 | B7FGQ3 | 90.9 | 55 | 5 | 0 | 1 | 55 | 261 | 315 | 9.5e-22 | 112.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene71281.t1 | TF | WRKY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71281.t1 | MTR_4g094908 | 90.909 | 55 | 5 | 0 | 1 | 55 | 261 | 315 | 3.50e-31 | 114 |
| MS.gene71281.t1 | MTR_5g016610 | 81.818 | 55 | 10 | 0 | 1 | 55 | 194 | 248 | 4.55e-28 | 104 |
| MS.gene71281.t1 | MTR_1g070455 | 78.182 | 55 | 12 | 0 | 1 | 55 | 288 | 342 | 1.40e-26 | 102 |
| MS.gene71281.t1 | MTR_1g009613 | 77.778 | 54 | 12 | 0 | 2 | 55 | 258 | 311 | 6.07e-26 | 100 |
| MS.gene71281.t1 | MTR_4g127040 | 72.727 | 55 | 15 | 0 | 1 | 55 | 240 | 294 | 4.97e-23 | 92.4 |
| MS.gene71281.t1 | MTR_1g054495 | 54.286 | 70 | 32 | 0 | 51 | 120 | 139 | 208 | 1.03e-19 | 82.0 |
| MS.gene71281.t1 | MTR_0117s0040 | 59.322 | 59 | 24 | 0 | 1 | 59 | 69 | 127 | 2.11e-19 | 81.6 |
| MS.gene71281.t1 | MTR_5g018660 | 71.429 | 49 | 14 | 0 | 54 | 102 | 51 | 99 | 3.28e-19 | 77.8 |
| MS.gene71281.t1 | MTR_3g108960 | 59.322 | 59 | 24 | 0 | 1 | 59 | 309 | 367 | 8.61e-19 | 81.6 |
| MS.gene71281.t1 | MTR_7g109600 | 60.784 | 51 | 19 | 1 | 6 | 55 | 52 | 102 | 5.06e-17 | 75.5 |
| MS.gene71281.t1 | MTR_8g087000 | 61.224 | 49 | 19 | 0 | 7 | 55 | 78 | 126 | 1.42e-16 | 73.9 |
| MS.gene71281.t1 | MTR_8g087000 | 61.224 | 49 | 19 | 0 | 7 | 55 | 77 | 125 | 1.52e-16 | 73.9 |
| MS.gene71281.t1 | MTR_2g032030 | 58.182 | 55 | 22 | 1 | 2 | 55 | 262 | 316 | 3.76e-16 | 74.3 |
| MS.gene71281.t1 | MTR_2g032030 | 58.182 | 55 | 22 | 1 | 2 | 55 | 262 | 316 | 4.33e-16 | 74.3 |
| MS.gene71281.t1 | MTR_2g083870 | 61.224 | 49 | 19 | 0 | 7 | 55 | 81 | 129 | 1.90e-15 | 71.2 |
| MS.gene71281.t1 | MTR_8g028565 | 57.692 | 52 | 22 | 0 | 4 | 55 | 153 | 204 | 4.40e-15 | 70.9 |
| MS.gene71281.t1 | MTR_2g016770 | 59.184 | 49 | 20 | 0 | 7 | 55 | 36 | 84 | 5.47e-15 | 69.3 |
| MS.gene71281.t1 | MTR_2g016770 | 59.184 | 49 | 20 | 0 | 7 | 55 | 28 | 76 | 5.59e-15 | 68.9 |
| MS.gene71281.t1 | MTR_7g079040 | 52.727 | 55 | 26 | 0 | 1 | 55 | 149 | 203 | 1.15e-14 | 69.7 |
| MS.gene71281.t1 | MTR_1g099600 | 52.830 | 53 | 25 | 0 | 3 | 55 | 182 | 234 | 2.84e-14 | 68.6 |
| MS.gene71281.t1 | MTR_4g130900 | 53.846 | 52 | 23 | 1 | 4 | 55 | 357 | 407 | 3.94e-13 | 65.9 |
| MS.gene71281.t1 | MTR_5g094430 | 53.846 | 52 | 23 | 1 | 3 | 54 | 361 | 411 | 1.00e-12 | 64.7 |
| MS.gene71281.t1 | MTR_3g056100 | 53.846 | 52 | 23 | 1 | 3 | 54 | 399 | 449 | 1.42e-12 | 64.3 |
| MS.gene71281.t1 | MTR_8g067635 | 64.286 | 42 | 15 | 0 | 4 | 45 | 347 | 388 | 1.57e-12 | 63.9 |
| MS.gene71281.t1 | MTR_7g011820 | 55.769 | 52 | 22 | 1 | 3 | 54 | 407 | 457 | 1.94e-12 | 63.9 |
| MS.gene71281.t1 | MTR_3g031220 | 55.769 | 52 | 22 | 1 | 3 | 54 | 362 | 412 | 3.78e-12 | 62.8 |
| MS.gene71281.t1 | MTR_4g013260 | 53.846 | 52 | 23 | 1 | 3 | 54 | 333 | 383 | 4.14e-12 | 62.8 |
| MS.gene71281.t1 | MTR_5g094430 | 53.846 | 52 | 23 | 1 | 3 | 54 | 249 | 299 | 4.24e-12 | 62.8 |
| MS.gene71281.t1 | MTR_5g094430 | 53.846 | 52 | 23 | 1 | 3 | 54 | 227 | 277 | 4.59e-12 | 62.8 |
| MS.gene71281.t1 | MTR_3g056100 | 53.846 | 52 | 23 | 1 | 3 | 54 | 255 | 305 | 7.60e-12 | 62.0 |
| MS.gene71281.t1 | MTR_3g056100 | 53.846 | 52 | 23 | 1 | 3 | 54 | 268 | 318 | 7.73e-12 | 62.0 |
| MS.gene71281.t1 | MTR_2g024350 | 58.140 | 43 | 18 | 0 | 3 | 45 | 5 | 47 | 8.02e-12 | 60.8 |
| MS.gene71281.t1 | MTR_2g024380 | 53.061 | 49 | 23 | 0 | 7 | 55 | 252 | 300 | 8.20e-12 | 62.0 |
| MS.gene71281.t1 | MTR_3g009470 | 53.846 | 52 | 23 | 1 | 3 | 54 | 492 | 542 | 8.48e-12 | 62.0 |
| MS.gene71281.t1 | MTR_3g056100 | 53.846 | 52 | 23 | 1 | 3 | 54 | 412 | 462 | 8.51e-12 | 62.0 |
| MS.gene71281.t1 | MTR_4g007060 | 52.941 | 51 | 24 | 0 | 4 | 54 | 126 | 176 | 1.45e-11 | 60.8 |
| MS.gene71281.t1 | MTR_4g007060 | 52.941 | 51 | 24 | 0 | 4 | 54 | 160 | 210 | 1.51e-11 | 60.8 |
| MS.gene71281.t1 | MTR_1g015140 | 48.148 | 54 | 27 | 1 | 1 | 54 | 97 | 149 | 1.52e-11 | 59.3 |
| MS.gene71281.t1 | MTR_4g094412 | 52.083 | 48 | 23 | 0 | 7 | 54 | 244 | 291 | 1.99e-11 | 60.8 |
| MS.gene71281.t1 | MTR_4g094412 | 52.083 | 48 | 23 | 0 | 7 | 54 | 235 | 282 | 2.06e-11 | 60.8 |
| MS.gene71281.t1 | MTR_8g098945 | 61.538 | 39 | 15 | 0 | 7 | 45 | 130 | 168 | 2.16e-11 | 60.1 |
| MS.gene71281.t1 | MTR_2g023930 | 47.170 | 53 | 28 | 0 | 2 | 54 | 301 | 353 | 2.83e-11 | 60.5 |
| MS.gene71281.t1 | MTR_3g106060 | 50.000 | 48 | 24 | 0 | 7 | 54 | 139 | 186 | 3.54e-11 | 59.7 |
| MS.gene71281.t1 | MTR_8g067650 | 61.905 | 42 | 16 | 0 | 4 | 45 | 337 | 378 | 3.95e-11 | 60.1 |
| MS.gene71281.t1 | MTR_2g088000 | 45.283 | 53 | 29 | 0 | 2 | 54 | 345 | 397 | 5.16e-11 | 59.7 |
| MS.gene71281.t1 | MTR_4g132430 | 47.170 | 53 | 28 | 0 | 2 | 54 | 257 | 309 | 5.80e-11 | 59.7 |
| MS.gene71281.t1 | MTR_3g053330 | 47.170 | 53 | 28 | 0 | 2 | 54 | 247 | 299 | 5.97e-11 | 59.3 |
| MS.gene71281.t1 | MTR_7g100510 | 47.170 | 53 | 27 | 1 | 2 | 54 | 357 | 408 | 6.04e-11 | 59.3 |
| MS.gene71281.t1 | MTR_5g074400 | 52.830 | 53 | 24 | 1 | 3 | 55 | 417 | 468 | 6.53e-11 | 59.3 |
| MS.gene71281.t1 | MTR_7g080020 | 63.636 | 44 | 15 | 1 | 3 | 46 | 490 | 532 | 6.87e-11 | 59.3 |
| MS.gene71281.t1 | MTR_7g109800 | 54.167 | 48 | 21 | 1 | 7 | 54 | 146 | 192 | 9.07e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71281.t1 | AT2G23320 | 81.818 | 55 | 10 | 0 | 1 | 55 | 235 | 289 | 3.69e-29 | 108 |
| MS.gene71281.t1 | AT4G24240 | 81.818 | 55 | 10 | 0 | 1 | 55 | 276 | 330 | 1.24e-27 | 105 |
| MS.gene71281.t1 | AT2G24570 | 78.182 | 55 | 12 | 0 | 1 | 55 | 238 | 292 | 2.30e-27 | 103 |
| MS.gene71281.t1 | AT4G31550 | 78.182 | 55 | 12 | 0 | 1 | 55 | 241 | 295 | 3.97e-27 | 103 |
| MS.gene71281.t1 | AT4G31550 | 78.182 | 55 | 12 | 0 | 1 | 55 | 240 | 294 | 4.07e-27 | 103 |
| MS.gene71281.t1 | AT3G04670 | 78.182 | 55 | 12 | 0 | 1 | 55 | 257 | 311 | 5.01e-27 | 103 |
| MS.gene71281.t1 | AT5G28650 | 76.364 | 55 | 13 | 0 | 1 | 55 | 257 | 311 | 1.70e-26 | 102 |
| MS.gene71281.t1 | AT2G30590 | 76.364 | 55 | 13 | 0 | 1 | 55 | 308 | 362 | 1.08e-25 | 100 |
| MS.gene71281.t1 | AT1G29280 | 60.714 | 56 | 20 | 1 | 2 | 55 | 68 | 123 | 5.04e-19 | 80.9 |
| MS.gene71281.t1 | AT2G34830 | 58.182 | 55 | 22 | 1 | 2 | 55 | 219 | 273 | 3.17e-16 | 74.7 |
| MS.gene71281.t1 | AT2G34830 | 58.182 | 55 | 22 | 1 | 2 | 55 | 210 | 264 | 3.41e-16 | 74.3 |
| MS.gene71281.t1 | AT3G58710 | 63.265 | 49 | 18 | 0 | 7 | 55 | 72 | 120 | 6.85e-16 | 72.8 |
| MS.gene71281.t1 | AT3G58710 | 63.265 | 49 | 18 | 0 | 7 | 55 | 71 | 119 | 6.92e-16 | 72.4 |
| MS.gene71281.t1 | AT1G30650 | 58.182 | 55 | 22 | 1 | 2 | 55 | 212 | 266 | 2.12e-15 | 72.4 |
| MS.gene71281.t1 | AT2G04880 | 55.769 | 52 | 22 | 1 | 3 | 54 | 304 | 354 | 2.94e-14 | 68.9 |
| MS.gene71281.t1 | AT2G04880 | 55.769 | 52 | 22 | 1 | 3 | 54 | 280 | 330 | 3.83e-14 | 68.6 |
| MS.gene71281.t1 | AT4G01250 | 53.846 | 52 | 24 | 0 | 4 | 55 | 126 | 177 | 4.65e-14 | 67.8 |
| MS.gene71281.t1 | AT4G30935 | 49.091 | 55 | 27 | 1 | 4 | 58 | 329 | 382 | 2.17e-13 | 66.6 |
| MS.gene71281.t1 | AT2G38470 | 54.717 | 53 | 23 | 1 | 3 | 55 | 359 | 410 | 5.15e-13 | 65.5 |
| MS.gene71281.t1 | AT5G45050 | 52.941 | 51 | 24 | 0 | 5 | 55 | 1040 | 1090 | 7.82e-13 | 65.1 |
| MS.gene71281.t1 | AT5G45050 | 52.941 | 51 | 24 | 0 | 5 | 55 | 1179 | 1229 | 7.88e-13 | 65.1 |
| MS.gene71281.t1 | AT5G45050 | 52.941 | 51 | 24 | 0 | 5 | 55 | 1151 | 1201 | 8.18e-13 | 65.1 |
| MS.gene71281.t1 | AT5G52830 | 50.943 | 53 | 26 | 0 | 3 | 55 | 162 | 214 | 9.06e-13 | 64.7 |
| MS.gene71281.t1 | AT4G23550 | 60.465 | 43 | 17 | 0 | 3 | 45 | 137 | 179 | 3.91e-12 | 62.8 |
| MS.gene71281.t1 | AT4G26440 | 59.574 | 47 | 18 | 1 | 3 | 49 | 369 | 414 | 4.33e-12 | 62.8 |
| MS.gene71281.t1 | AT5G26170 | 51.923 | 52 | 24 | 1 | 3 | 54 | 110 | 160 | 4.65e-12 | 60.8 |
| MS.gene71281.t1 | AT4G26640 | 52.830 | 53 | 24 | 1 | 3 | 55 | 202 | 253 | 8.62e-12 | 62.0 |
| MS.gene71281.t1 | AT4G26640 | 52.830 | 53 | 24 | 1 | 3 | 55 | 202 | 253 | 8.62e-12 | 62.0 |
| MS.gene71281.t1 | AT4G26640 | 52.830 | 53 | 24 | 1 | 3 | 55 | 202 | 253 | 8.62e-12 | 62.0 |
| MS.gene71281.t1 | AT4G26640 | 52.830 | 53 | 24 | 1 | 3 | 55 | 202 | 253 | 8.62e-12 | 62.0 |
| MS.gene71281.t1 | AT4G26640 | 52.830 | 53 | 24 | 1 | 3 | 55 | 306 | 357 | 9.62e-12 | 62.0 |
| MS.gene71281.t1 | AT4G26640 | 52.830 | 53 | 24 | 1 | 3 | 55 | 378 | 429 | 1.04e-11 | 61.6 |
| MS.gene71281.t1 | AT4G26640 | 52.830 | 53 | 24 | 1 | 3 | 55 | 338 | 389 | 1.09e-11 | 61.6 |
| MS.gene71281.t1 | AT5G56270 | 53.846 | 52 | 23 | 1 | 3 | 54 | 484 | 534 | 1.31e-11 | 61.6 |
| MS.gene71281.t1 | AT1G13960 | 53.846 | 52 | 23 | 1 | 3 | 54 | 406 | 456 | 1.52e-11 | 61.2 |
| MS.gene71281.t1 | AT1G62300 | 47.170 | 53 | 28 | 0 | 2 | 54 | 308 | 360 | 2.07e-11 | 60.8 |
| MS.gene71281.t1 | AT5G07100 | 53.846 | 52 | 23 | 1 | 3 | 54 | 138 | 188 | 2.95e-11 | 59.3 |
| MS.gene71281.t1 | AT5G07100 | 53.846 | 52 | 23 | 1 | 3 | 54 | 138 | 188 | 2.95e-11 | 59.3 |
| MS.gene71281.t1 | AT5G07100 | 53.846 | 52 | 23 | 1 | 3 | 54 | 138 | 188 | 2.95e-11 | 59.3 |
| MS.gene71281.t1 | AT5G07100 | 53.846 | 52 | 23 | 1 | 3 | 54 | 138 | 188 | 2.95e-11 | 59.3 |
| MS.gene71281.t1 | AT3G01080 | 52.830 | 53 | 24 | 1 | 2 | 54 | 302 | 353 | 3.01e-11 | 60.5 |
| MS.gene71281.t1 | AT3G01080 | 52.830 | 53 | 24 | 1 | 2 | 54 | 340 | 391 | 3.05e-11 | 60.5 |
| MS.gene71281.t1 | AT4G22070 | 47.170 | 53 | 28 | 0 | 2 | 54 | 293 | 345 | 3.47e-11 | 60.1 |
| MS.gene71281.t1 | AT4G22070 | 47.170 | 53 | 28 | 0 | 2 | 54 | 293 | 345 | 3.47e-11 | 60.1 |
| MS.gene71281.t1 | AT4G22070 | 47.170 | 53 | 28 | 0 | 2 | 54 | 293 | 345 | 3.47e-11 | 60.1 |
| MS.gene71281.t1 | AT4G22070 | 47.170 | 53 | 28 | 0 | 2 | 54 | 293 | 345 | 3.47e-11 | 60.1 |
| MS.gene71281.t1 | AT5G15130 | 52.083 | 48 | 23 | 0 | 7 | 54 | 228 | 275 | 3.76e-11 | 60.1 |
| MS.gene71281.t1 | AT5G15130 | 52.083 | 48 | 23 | 0 | 7 | 54 | 186 | 233 | 4.08e-11 | 60.1 |
| MS.gene71281.t1 | AT1G68150 | 52.083 | 48 | 23 | 0 | 7 | 54 | 236 | 283 | 4.34e-11 | 59.7 |
| MS.gene71281.t1 | AT2G23320 | 88.462 | 26 | 3 | 0 | 1 | 26 | 235 | 260 | 4.81e-11 | 59.3 |
| MS.gene71281.t1 | AT5G07100 | 53.846 | 52 | 23 | 1 | 3 | 54 | 231 | 281 | 5.20e-11 | 59.3 |
| MS.gene71281.t1 | AT1G55600 | 52.083 | 48 | 22 | 1 | 7 | 54 | 308 | 354 | 6.00e-11 | 59.7 |
| MS.gene71281.t1 | AT1G13960 | 52.830 | 53 | 24 | 1 | 3 | 55 | 253 | 304 | 6.85e-11 | 59.3 |
| MS.gene71281.t1 | AT4G04450 | 45.283 | 53 | 29 | 0 | 2 | 54 | 288 | 340 | 7.84e-11 | 59.3 |
Find 29 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAAATATACAACTCTTAT+AGG | 0.177807 | 3.4:-78195770 | MS.gene71281:CDS |
| TGGATGAGGTGAACCTTTAA+TGG | 0.228013 | 3.4:+78196619 | None:intergenic |
| TTATAGGTACATATGAAAAT+TGG | 0.250708 | 3.4:-78194864 | MS.gene71281:intron |
| CAGGTGTTGCCATCTAAATT+TGG | 0.293092 | 3.4:-78195884 | MS.gene71281:CDS |
| CGCTCTACATGCTTTCTTGC+TGG | 0.297065 | 3.4:+78196245 | None:intergenic |
| TTACACCAGATGATTATTCT+TGG | 0.297422 | 3.4:-78196661 | MS.gene71281:CDS |
| AAGACTTTAAAGTTCTTATT+CGG | 0.299472 | 3.4:-78195799 | MS.gene71281:CDS |
| GATTATTCTTGGAGAAAATA+TGG | 0.308918 | 3.4:-78196650 | MS.gene71281:CDS |
| CAACTCTTATAGGACTTGAT+TGG | 0.329936 | 3.4:-78195760 | MS.gene71281:CDS |
| TATGGTCAGAAACCCATTAA+AGG | 0.330566 | 3.4:-78196632 | MS.gene71281:CDS |
| GGATGAGGTGAACCTTTAAT+GGG | 0.399396 | 3.4:+78196620 | None:intergenic |
| ACCTTGAAGCGGATGACTCC+TGG | 0.399741 | 3.4:+78195707 | None:intergenic |
| TTGTCATGTTGCAGTGATAA+TGG | 0.400116 | 3.4:-78195830 | MS.gene71281:CDS |
| CTGCACCCTATTGCAACCAT+TGG | 0.405092 | 3.4:-78195254 | MS.gene71281:CDS |
| AGCAGCCCAATGGTTGCAAT+AGG | 0.417137 | 3.4:+78195248 | None:intergenic |
| GCCAGGAGTCATCCGCTTCA+AGG | 0.456651 | 3.4:-78195708 | MS.gene71281:intron |
| TTTCTCCAAGAATAATCATC+TGG | 0.457317 | 3.4:+78196656 | None:intergenic |
| AACTCTTATAGGACTTGATT+GGG | 0.462911 | 3.4:-78195759 | MS.gene71281:CDS |
| TGCACCCTATTGCAACCATT+GGG | 0.468149 | 3.4:-78195253 | MS.gene71281:CDS |
| TTCAAGTGCAATAGTGTGAG+AGG | 0.486384 | 3.4:-78196272 | MS.gene71281:CDS |
| GCAGCCCAATGGTTGCAATA+GGG | 0.499493 | 3.4:+78195249 | None:intergenic |
| TTGAAACTGTCAGCAAAGCT+TGG | 0.504526 | 3.4:-78195277 | MS.gene71281:intron |
| CAATCTAATTACTTCCAGCC+AGG | 0.524737 | 3.4:-78195725 | MS.gene71281:CDS |
| TCTTGATGATGCTTCTATGC+TGG | 0.531866 | 3.4:-78196219 | MS.gene71281:intron |
| TGAAGCGGATGACTCCTGGC+TGG | 0.564886 | 3.4:+78195711 | None:intergenic |
| AATTGAAAGTACCTTGGATG+AGG | 0.611960 | 3.4:+78196605 | None:intergenic |
| TTAAAGGTTCACCTCATCCA+AGG | 0.614226 | 3.4:-78196616 | MS.gene71281:intron |
| GAGGAATCACAGCAGCCCAA+TGG | 0.618940 | 3.4:+78195238 | None:intergenic |
| TCAAGTGCAATAGTGTGAGA+GGG | 0.654654 | 3.4:-78196271 | MS.gene71281:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGAATTTAAAGTAATAT+TGG | - | chr3.4:78196404-78196423 | MS.gene71281:intron | 10.0% |
| !! | ATTTAGCAAAAATAAATTTG+TGG | + | chr3.4:78196571-78196590 | None:intergenic | 15.0% |
| !! | TTATGAATGATTATGATTAT+TGG | - | chr3.4:78195122-78195141 | MS.gene71281:intron | 15.0% |
| !! | TTGTTAACTTATGAATTTAT+AGG | - | chr3.4:78196649-78196668 | MS.gene71281:CDS | 15.0% |
| !!! | TAAGTACCATTTTATATTAA+TGG | - | chr3.4:78196069-78196088 | MS.gene71281:intron | 15.0% |
| !!! | TTTAACAATATGTATTTCTA+TGG | - | chr3.4:78195962-78195981 | MS.gene71281:intron | 15.0% |
| !!! | TTTTCAATTATTCAATTTTC+AGG | - | chr3.4:78195626-78195645 | MS.gene71281:intron | 15.0% |
| !! | AAAAATCCTGATATTAATAC+TGG | + | chr3.4:78196538-78196557 | None:intergenic | 20.0% |
| !! | AAAATCCTGATATTAATACT+GGG | + | chr3.4:78196537-78196556 | None:intergenic | 20.0% |
| !! | AAAGAATACAATAGAACAAT+AGG | + | chr3.4:78196119-78196138 | None:intergenic | 20.0% |
| !! | ACTAATTAAATGATACAAAC+CGG | + | chr3.4:78196196-78196215 | None:intergenic | 20.0% |
| !! | ATAAATAGGTTCATATACAT+AGG | + | chr3.4:78194984-78195003 | None:intergenic | 20.0% |
| !! | CATAATCATTCATAAACATT+TGG | + | chr3.4:78195117-78195136 | None:intergenic | 20.0% |
| !! | GAAAATATAACTCTAACAAT+AGG | + | chr3.4:78195995-78196014 | None:intergenic | 20.0% |
| !! | GATAAATATACAACTCTTAT+AGG | - | chr3.4:78195759-78195778 | MS.gene71281:CDS | 20.0% |
| !! | TAAATAGGTTCATATACATA+GGG | + | chr3.4:78194983-78195002 | None:intergenic | 20.0% |
| !! | TGATCACCATTAATATAAAA+TGG | + | chr3.4:78196078-78196097 | None:intergenic | 20.0% |
| !! | TTATAGGTACATATGAAAAT+TGG | - | chr3.4:78196665-78196684 | MS.gene71281:CDS | 20.0% |
| !!! | AAGACTTTAAAGTTCTTATT+CGG | - | chr3.4:78195730-78195749 | MS.gene71281:CDS | 20.0% |
| !!! | ATGTTAGTACATTTTCAAAA+TGG | - | chr3.4:78195420-78195439 | MS.gene71281:intron | 20.0% |
| !!! | ATTTGACTTTTTTTGTGTAT+TGG | - | chr3.4:78195154-78195173 | MS.gene71281:intron | 20.0% |
| !!! | TAATTTTGGGAACAATAATA+GGG | - | chr3.4:78195229-78195248 | MS.gene71281:CDS | 20.0% |
| !!! | TTTGACTTTTTTTGTGTATT+GGG | - | chr3.4:78195155-78195174 | MS.gene71281:intron | 20.0% |
| !!! | TTTTCAAAATGGTAAATTGT+TGG | - | chr3.4:78195431-78195450 | MS.gene71281:intron | 20.0% |
| ! | AAAAAGTCACCAAATTTAGA+TGG | + | chr3.4:78195657-78195676 | None:intergenic | 25.0% |
| ! | AAATAGGTTCATATACATAG+GGG | + | chr3.4:78194982-78195001 | None:intergenic | 25.0% |
| ! | AACTGAAGTAGAAATATAAG+AGG | + | chr3.4:78196049-78196068 | None:intergenic | 25.0% |
| ! | ATAGCTACTATTATTAGATG+AGG | - | chr3.4:78196488-78196507 | MS.gene71281:intron | 25.0% |
| ! | GATTATTCTTGGAGAAAATA+TGG | - | chr3.4:78194879-78194898 | MS.gene71281:intron | 25.0% |
| !! | ACAATATGTATTTCTATGGT+TGG | - | chr3.4:78195966-78195985 | MS.gene71281:intron | 25.0% |
| !! | AGACTACTCAAAATTTTAAG+TGG | - | chr3.4:78195090-78195109 | MS.gene71281:intron | 25.0% |
| !!! | AATTTTGGGAACAATAATAG+GGG | - | chr3.4:78195230-78195249 | MS.gene71281:CDS | 25.0% |
| !!! | GTAATTTTGGGAACAATAAT+AGG | - | chr3.4:78195228-78195247 | MS.gene71281:CDS | 25.0% |
| !!! | TAATTGAATTGAAAGTACCT+TGG | + | chr3.4:78194933-78194952 | None:intergenic | 25.0% |
| !!! | TGCTGATTTTGTGTAATTTT+GGG | - | chr3.4:78195216-78195235 | MS.gene71281:intron | 25.0% |
| AACTCTTATAGGACTTGATT+GGG | - | chr3.4:78195770-78195789 | MS.gene71281:CDS | 30.0% | |
| AGATGGTAGTATATACAAAC+TGG | + | chr3.4:78196146-78196165 | None:intergenic | 30.0% | |
| AGCAATTTATAAGAGACTTC+AGG | + | chr3.4:78196373-78196392 | None:intergenic | 30.0% | |
| CAAAATGGTAAATTGTTGGT+TGG | - | chr3.4:78195435-78195454 | MS.gene71281:intron | 30.0% | |
| TACTCAATGTTGAAGGAAAT+TGG | - | chr3.4:78195485-78195504 | MS.gene71281:intron | 30.0% | |
| TCTATGAGTCTTTGTAATCA+AGG | - | chr3.4:78196013-78196032 | MS.gene71281:intron | 30.0% | |
| TTACACCAGATGATTATTCT+TGG | - | chr3.4:78194868-78194887 | MS.gene71281:intron | 30.0% | |
| TTTCTCCAAGAATAATCATC+TGG | + | chr3.4:78194876-78194895 | None:intergenic | 30.0% | |
| ! | GATGTTTTACTCAATGTTGA+AGG | - | chr3.4:78195478-78195497 | MS.gene71281:intron | 30.0% |
| ! | TATACTACCATCTATGCTTT+TGG | - | chr3.4:78196153-78196172 | MS.gene71281:intron | 30.0% |
| ! | TTTGAAACCAAAAGCATAGA+TGG | + | chr3.4:78196163-78196182 | None:intergenic | 30.0% |
| !! | TGGTGGTTGTTTAATTTTGA+GGG | - | chr3.4:78195505-78195524 | MS.gene71281:intron | 30.0% |
| !! | TTGGTGGTTGTTTAATTTTG+AGG | - | chr3.4:78195504-78195523 | MS.gene71281:intron | 30.0% |
| !!! | GACTTGACAGTTACTTTTTT+GGG | + | chr3.4:78196326-78196345 | None:intergenic | 30.0% |
| !!! | GTGCTGATTTTGTGTAATTT+TGG | - | chr3.4:78195215-78195234 | MS.gene71281:intron | 30.0% |
| !!! | TCATTGTAGTTTTGACTCTT+TGG | - | chr3.4:78196443-78196462 | MS.gene71281:intron | 30.0% |
| !!! | TGACTTGACAGTTACTTTTT+TGG | + | chr3.4:78196327-78196346 | None:intergenic | 30.0% |
| !!! | TTTTTTTGCTAACCTTGAAG+CGG | + | chr3.4:78195836-78195855 | None:intergenic | 30.0% |
| ATGCTGGTAGTTACATATGA+AGG | - | chr3.4:78195326-78195345 | MS.gene71281:intron | 35.0% | |
| CAACTCTTATAGGACTTGAT+TGG | - | chr3.4:78195769-78195788 | MS.gene71281:CDS | 35.0% | |
| GGTAGTATATACAAACTGGT+AGG | + | chr3.4:78196142-78196161 | None:intergenic | 35.0% | |
| TATGGTCAGAAACCCATTAA+AGG | - | chr3.4:78194897-78194916 | MS.gene71281:intron | 35.0% | |
| TCAATGTTGAAGGAAATTGG+TGG | - | chr3.4:78195488-78195507 | MS.gene71281:intron | 35.0% | |
| TGACACCCAGTATTAATATC+AGG | - | chr3.4:78196529-78196548 | MS.gene71281:intron | 35.0% | |
| TGCTGACAGTTTCAATTGAT+AGG | + | chr3.4:78196247-78196266 | None:intergenic | 35.0% | |
| TTATCACTGTCACAATGTTC+TGG | + | chr3.4:78195596-78195615 | None:intergenic | 35.0% | |
| TTGTCATGTTGCAGTGATAA+TGG | - | chr3.4:78195699-78195718 | MS.gene71281:intron | 35.0% | |
| ! | GGTAAATTGTTGGTTGGTTA+TGG | - | chr3.4:78195441-78195460 | MS.gene71281:intron | 35.0% |
| !! | AATTGAAAGTACCTTGGATG+AGG | + | chr3.4:78194927-78194946 | None:intergenic | 35.0% |
| !!! | TAGTTTTGACTCTTTGGAGA+TGG | - | chr3.4:78196449-78196468 | MS.gene71281:intron | 35.0% |
| AATGCGTGAACTTAACCATC+AGG | + | chr3.4:78195532-78195551 | None:intergenic | 40.0% | |
| ACCTCTAATCGTTTGGTCTA+AGG | - | chr3.4:78195903-78195922 | MS.gene71281:intron | 40.0% | |
| AGGTTCATATACATAGGGGA+AGG | + | chr3.4:78194978-78194997 | None:intergenic | 40.0% | |
| ATGCGTGAACTTAACCATCA+GGG | + | chr3.4:78195531-78195550 | None:intergenic | 40.0% | |
| CAATCTAATTACTTCCAGCC+AGG | - | chr3.4:78195804-78195823 | MS.gene71281:CDS | 40.0% | |
| GGATGAGGTGAACCTTTAAT+GGG | + | chr3.4:78194912-78194931 | None:intergenic | 40.0% | |
| GGTTCATATACATAGGGGAA+GGG | + | chr3.4:78194977-78194996 | None:intergenic | 40.0% | |
| GGTTTCAAACTAGCATCTAC+CGG | - | chr3.4:78196174-78196193 | MS.gene71281:intron | 40.0% | |
| TAGACATAGCACACACTGAA+TGG | + | chr3.4:78195861-78195880 | None:intergenic | 40.0% | |
| TCAAGTGCAATAGTGTGAGA+GGG | - | chr3.4:78195258-78195277 | MS.gene71281:CDS | 40.0% | |
| TGATGAATCTTGTGAGTGAG+TGG | - | chr3.4:78195193-78195212 | MS.gene71281:intron | 40.0% | |
| TGCATCTACCTCTAATCGTT+TGG | - | chr3.4:78195896-78195915 | MS.gene71281:intron | 40.0% | |
| TGGATGAGGTGAACCTTTAA+TGG | + | chr3.4:78194913-78194932 | None:intergenic | 40.0% | |
| TTAAAGGTTCACCTCATCCA+AGG | - | chr3.4:78194913-78194932 | MS.gene71281:intron | 40.0% | |
| TTCAAGTGCAATAGTGTGAG+AGG | - | chr3.4:78195257-78195276 | MS.gene71281:CDS | 40.0% | |
| TTGAAACTGTCAGCAAAGCT+TGG | - | chr3.4:78196252-78196271 | MS.gene71281:CDS | 40.0% | |
| ! | CAGGTGTTGCCATCTAAATT+TGG | - | chr3.4:78195645-78195664 | MS.gene71281:intron | 40.0% |
| !! | TCTTGATGATGCTTCTATGC+TGG | - | chr3.4:78195310-78195329 | MS.gene71281:intron | 40.0% |
| !! | TTTAATTTTGAGGGCCCTGA+TGG | - | chr3.4:78195514-78195533 | MS.gene71281:intron | 40.0% |
| !!! | CTTTTTTGGGAACTCGTATG+AGG | + | chr3.4:78196313-78196332 | None:intergenic | 40.0% |
| GCCTTAGACCAAACGATTAG+AGG | + | chr3.4:78195907-78195926 | None:intergenic | 45.0% | |
| GCTAGCATCAGCTGTAGAAA+GGG | + | chr3.4:78195366-78195385 | None:intergenic | 45.0% | |
| TGCACCCTATTGCAACCATT+GGG | - | chr3.4:78196276-78196295 | MS.gene71281:CDS | 45.0% | |
| TGCTAGCATCAGCTGTAGAA+AGG | + | chr3.4:78195367-78195386 | None:intergenic | 45.0% | |
| !! | AAAAATTGTATAAAATAAAT+AGG | + | chr3.4:78194998-78195017 | None:intergenic | 5.0% |
| AGCAGCCCAATGGTTGCAAT+AGG | + | chr3.4:78196284-78196303 | None:intergenic | 50.0% | |
| CGCTCTACATGCTTTCTTGC+TGG | + | chr3.4:78195287-78195306 | None:intergenic | 50.0% | |
| CTGCACCCTATTGCAACCAT+TGG | - | chr3.4:78196275-78196294 | MS.gene71281:CDS | 50.0% | |
| GCAGCCCAATGGTTGCAATA+GGG | + | chr3.4:78196283-78196302 | None:intergenic | 50.0% | |
| ACCTTGAAGCGGATGACTCC+TGG | + | chr3.4:78195825-78195844 | None:intergenic | 55.0% | |
| GAGGAATCACAGCAGCCCAA+TGG | + | chr3.4:78196294-78196313 | None:intergenic | 55.0% | |
| GCCAGGAGTCATCCGCTTCA+AGG | - | chr3.4:78195821-78195840 | MS.gene71281:CDS | 60.0% | |
| TGAAGCGGATGACTCCTGGC+TGG | + | chr3.4:78195821-78195840 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 78194858 | 78196693 | 78194858 | ID=MS.gene71281 |
| chr3.4 | mRNA | 78194858 | 78196693 | 78194858 | ID=MS.gene71281.t1;Parent=MS.gene71281 |
| chr3.4 | exon | 78196617 | 78196693 | 78196617 | ID=MS.gene71281.t1.exon1;Parent=MS.gene71281.t1 |
| chr3.4 | CDS | 78196617 | 78196693 | 78196617 | ID=cds.MS.gene71281.t1;Parent=MS.gene71281.t1 |
| chr3.4 | exon | 78196220 | 78196301 | 78196220 | ID=MS.gene71281.t1.exon2;Parent=MS.gene71281.t1 |
| chr3.4 | CDS | 78196220 | 78196301 | 78196220 | ID=cds.MS.gene71281.t1;Parent=MS.gene71281.t1 |
| chr3.4 | exon | 78195709 | 78195903 | 78195709 | ID=MS.gene71281.t1.exon3;Parent=MS.gene71281.t1 |
| chr3.4 | CDS | 78195709 | 78195903 | 78195709 | ID=cds.MS.gene71281.t1;Parent=MS.gene71281.t1 |
| chr3.4 | exon | 78195220 | 78195286 | 78195220 | ID=MS.gene71281.t1.exon4;Parent=MS.gene71281.t1 |
| chr3.4 | CDS | 78195220 | 78195286 | 78195220 | ID=cds.MS.gene71281.t1;Parent=MS.gene71281.t1 |
| chr3.4 | exon | 78194858 | 78194880 | 78194858 | ID=MS.gene71281.t1.exon5;Parent=MS.gene71281.t1 |
| chr3.4 | CDS | 78194858 | 78194880 | 78194858 | ID=cds.MS.gene71281.t1;Parent=MS.gene71281.t1 |
| Gene Sequence |
| Protein sequence |
