AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71433

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71433.t1 MTR_1g077360 85.714 112 16 0 1 112 1 112 1.38e-66 201
MS.gene71433.t1 MTR_1g075600 86.607 112 15 0 1 112 1 112 1.23e-65 198
MS.gene71433.t1 MTR_3g052870 80.000 120 21 1 1 117 1 120 6.05e-65 196
MS.gene71433.t1 MTR_1g105920 80.000 120 21 1 1 117 1 120 1.13e-64 196
MS.gene71433.t1 MTR_1g105910 80.000 120 21 1 1 117 1 120 4.82e-64 194
MS.gene71433.t1 MTR_2g030740 77.500 120 24 1 1 117 1 120 7.31e-62 189
MS.gene71433.t1 MTR_1g108510 78.814 118 22 1 1 115 1 118 2.25e-61 187
MS.gene71433.t1 MTR_3g030770 78.814 118 22 1 1 115 1 118 4.10e-61 186
MS.gene71433.t1 MTR_1g106070 75.833 120 26 1 1 117 1 120 6.47e-61 184
MS.gene71433.t1 MTR_5g055100 78.571 112 24 0 1 112 1 112 9.82e-61 186
MS.gene71433.t1 MTR_2g085250 76.786 112 26 0 1 112 1 112 1.54e-60 185
MS.gene71433.t1 MTR_2g085280 76.786 112 26 0 1 112 1 112 1.81e-60 185
MS.gene71433.t1 MTR_3g052920 75.833 120 26 1 1 117 1 120 2.39e-60 185
MS.gene71433.t1 MTR_1g012570 80.909 110 21 0 1 110 1 110 6.63e-60 184
MS.gene71433.t1 MTR_8g043650 75.833 120 26 1 1 117 1 120 1.69e-59 183
MS.gene71433.t1 MTR_5g045560 76.786 112 26 0 1 112 1 112 2.06e-58 180
MS.gene71433.t1 MTR_0121s0100 75.000 116 29 0 1 116 1 116 9.60e-58 175
MS.gene71433.t1 MTR_2g093190 79.091 110 23 0 1 110 1 110 2.86e-57 177
MS.gene71433.t1 MTR_1g108580 72.034 118 30 1 1 115 1 118 7.38e-56 173
MS.gene71433.t1 MTR_5g053390 75.676 111 27 0 1 111 1 111 1.24e-55 173
MS.gene71433.t1 MTR_0121s0080 72.414 116 32 0 1 116 1 116 1.72e-54 170
MS.gene71433.t1 MTR_3g030780 70.536 112 33 0 1 112 1 112 2.83e-54 166
MS.gene71433.t1 MTR_1g105905 73.737 99 26 0 18 116 1 99 3.77e-48 153
MS.gene71433.t1 MTR_3g067910 70.652 92 27 0 21 112 2 93 2.14e-44 140
MS.gene71433.t1 MTR_3g080940 58.716 109 45 0 1 109 1 109 3.53e-41 135
MS.gene71433.t1 MTR_7g062350 65.686 102 34 1 16 116 27 128 4.14e-40 134
MS.gene71433.t1 MTR_1g075570 71.579 95 13 1 18 112 1 81 5.90e-39 128
MS.gene71433.t1 MTR_3g067875 83.929 56 9 0 18 73 1 56 1.78e-29 101
MS.gene71433.t1 MTR_8g086290 54.651 86 32 1 5 90 8 86 7.11e-28 100
MS.gene71433.t1 MTR_7g028448 54.444 90 41 0 5 94 8 97 3.55e-26 96.3
MS.gene71433.t1 MTR_4g036915 54.444 90 41 0 5 94 8 97 3.55e-26 96.3
MS.gene71433.t1 MTR_1g047550 45.045 111 55 2 9 115 2 110 3.64e-26 96.3
MS.gene71433.t1 MTR_2g105290 52.326 86 34 1 5 90 8 86 4.82e-26 95.9
MS.gene71433.t1 MTR_3g067915 53.750 80 37 0 33 112 3 82 4.15e-25 91.3
MS.gene71433.t1 MTR_1g108500 54.737 95 22 1 22 116 110 183 4.18e-25 97.1
MS.gene71433.t1 MTR_8g079502 57.746 71 30 0 9 79 2 72 5.38e-25 93.6
MS.gene71433.t1 MTR_4g131030 40.476 126 56 4 9 115 2 127 5.89e-24 91.7
MS.gene71433.t1 MTR_1g063160 44.954 109 58 2 9 115 2 110 8.66e-24 90.1
MS.gene71433.t1 MTR_3g067870 68.254 63 20 0 16 78 83 145 1.48e-23 89.0
MS.gene71433.t1 MTR_8g051580 52.564 78 37 0 9 86 2 79 3.97e-23 88.6
MS.gene71433.t1 MTR_1g054265 51.948 77 37 0 9 85 2 78 4.32e-23 88.2
MS.gene71433.t1 MTR_8g046350 54.930 71 32 0 9 79 2 72 3.03e-22 85.9
MS.gene71433.t1 MTR_4g127140 53.488 86 33 1 5 90 8 86 9.47e-20 80.1
MS.gene71433.t1 MTR_4g094638 53.623 69 32 0 9 77 2 70 3.50e-18 75.9
MS.gene71433.t1 MTR_1g053070 48.148 81 42 0 9 89 2 82 5.10e-18 76.6
MS.gene71433.t1 MTR_4g102530 49.315 73 37 0 10 82 3 75 8.04e-18 75.5
MS.gene71433.t1 MTR_4g094632 50.725 69 34 0 9 77 2 70 1.14e-17 73.9
MS.gene71433.t1 MTR_3g005530 50.000 68 34 0 9 76 2 69 1.57e-17 75.1
MS.gene71433.t1 MTR_4g093970 54.545 66 30 0 10 75 29 94 4.69e-17 73.9
MS.gene71433.t1 MTR_3g452380 47.297 74 39 0 3 76 11 84 4.83e-17 73.9
MS.gene71433.t1 MTR_5g066180 46.479 71 38 0 9 79 2 72 6.49e-17 73.6
MS.gene71433.t1 MTR_2g017865 39.806 103 61 1 9 111 17 118 6.90e-17 73.9
MS.gene71433.t1 MTR_0003s0590 51.471 68 33 0 9 76 2 69 1.11e-16 73.2
MS.gene71433.t1 MTR_8g033270 50.000 68 34 0 9 76 2 69 1.15e-16 73.2
MS.gene71433.t1 MTR_8g033220 46.154 78 42 0 10 87 3 80 2.45e-16 72.0
MS.gene71433.t1 MTR_8g033220 46.154 78 42 0 10 87 3 80 2.71e-16 72.0
MS.gene71433.t1 MTR_3g102570 42.157 102 56 3 9 109 2 101 3.72e-16 72.8
MS.gene71433.t1 MTR_2g009890 35.714 112 63 2 9 115 2 109 4.36e-16 72.0
MS.gene71433.t1 MTR_8g087860 50.000 68 34 0 9 76 18 85 5.36e-16 71.2
MS.gene71433.t1 MTR_4g109830 46.377 69 36 1 9 76 2 70 6.23e-16 70.9
MS.gene71433.t1 MTR_1g101970 48.529 68 35 0 9 76 2 69 6.39e-16 70.1
MS.gene71433.t1 MTR_6g464720 47.826 69 35 1 9 76 2 70 1.12e-15 70.5
MS.gene71433.t1 MTR_7g075870 49.254 67 34 0 10 76 3 69 1.45e-15 69.7
MS.gene71433.t1 MTR_4g084740 48.684 76 37 2 9 83 2 76 1.93e-15 70.9
MS.gene71433.t1 MTR_2g461710 53.571 56 26 0 9 64 2 57 5.55e-15 64.7
MS.gene71433.t1 MTR_5g032150 45.588 68 37 0 9 76 2 69 6.36e-15 68.2
MS.gene71433.t1 MTR_5g032520 46.269 67 36 0 10 76 3 69 6.75e-15 68.2
MS.gene71433.t1 MTR_1g029670 45.312 64 35 0 9 72 2 65 1.29e-14 66.6
MS.gene71433.t1 MTR_6g015975 46.377 69 36 1 9 76 2 70 1.36e-14 67.8
MS.gene71433.t1 MTR_5g031000 44.118 68 38 0 9 76 2 69 1.47e-14 67.4
MS.gene71433.t1 MTR_5g031000 44.118 68 38 0 9 76 2 69 1.56e-14 67.4
MS.gene71433.t1 MTR_5g066960 47.368 57 30 0 9 65 2 58 1.59e-14 63.2
MS.gene71433.t1 MTR_7g075870 48.529 68 34 1 10 76 3 70 2.11e-14 66.6
MS.gene71433.t1 MTR_1g038300 48.571 70 34 1 9 76 2 71 2.15e-14 67.0
MS.gene71433.t1 MTR_7g016600 46.377 69 36 1 9 76 2 70 2.52e-14 67.0
MS.gene71433.t1 MTR_7g016630 41.667 72 41 1 9 79 2 73 2.55e-14 67.0
MS.gene71433.t1 MTR_8g066260 44.928 69 37 1 9 76 2 70 2.88e-14 66.6
MS.gene71433.t1 MTR_5g046790 32.710 107 60 2 9 103 2 108 4.01e-14 65.9
MS.gene71433.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 4.39e-14 66.2
MS.gene71433.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 4.48e-14 65.9
MS.gene71433.t1 MTR_5g046870 51.786 56 27 0 9 64 2 57 6.42e-14 63.2
MS.gene71433.t1 MTR_3g084980 53.571 56 26 0 9 64 2 57 8.04e-14 65.5
MS.gene71433.t1 MTR_3g113030 47.619 63 33 0 9 71 2 64 9.71e-14 65.1
MS.gene71433.t1 MTR_3g088615 42.857 70 38 1 9 76 2 71 1.50e-13 63.9
MS.gene71433.t1 MTR_8g097090 51.786 56 27 0 9 64 2 57 1.52e-13 64.7
MS.gene71433.t1 MTR_7g075850 47.143 70 35 1 9 76 2 71 1.99e-13 64.7
MS.gene71433.t1 MTR_4g109810 50.000 56 28 0 9 64 2 57 2.23e-13 64.3
MS.gene71433.t1 MTR_8g022970 42.466 73 42 0 10 82 19 91 1.27e-12 61.2
MS.gene71433.t1 MTR_4g093030 45.902 61 33 0 9 69 2 62 4.82e-12 59.3
MS.gene71433.t1 MTR_3g437790 37.363 91 56 1 26 115 30 120 9.44e-12 59.3
MS.gene71433.t1 MTR_4g108720 37.634 93 53 3 9 97 2 93 2.70e-11 59.3
MS.gene71433.t1 MTR_4g051538 39.506 81 49 0 1 81 1 81 6.05e-11 57.8
MS.gene71433.t1 MTR_1g041615 58.696 46 19 0 20 65 17 62 7.54e-11 55.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71433.t1 AT5G60440 64.486 107 36 1 5 109 3 109 8.26e-43 142
MS.gene71433.t1 AT1G01530 54.867 113 49 1 4 116 2 112 1.60e-34 119
MS.gene71433.t1 AT4G36590 53.846 117 49 1 5 116 3 119 2.51e-34 119
MS.gene71433.t1 AT1G65360 52.679 112 51 1 5 116 3 112 1.44e-33 116
MS.gene71433.t1 AT2G24840 67.568 74 24 0 6 79 60 133 3.81e-29 106
MS.gene71433.t1 AT3G04100 39.423 104 60 1 2 102 7 110 3.54e-23 89.4
MS.gene71433.t1 AT2G34440 44.118 102 56 1 9 110 2 102 3.79e-23 88.6
MS.gene71433.t1 AT1G72350 57.534 73 29 1 9 81 43 113 6.48e-22 86.7
MS.gene71433.t1 AT3G66656 55.882 68 30 0 9 76 2 69 5.48e-21 83.2
MS.gene71433.t1 AT2G45650 40.566 106 59 2 9 110 2 107 2.85e-18 77.4
MS.gene71433.t1 AT4G09960 45.349 86 46 1 9 93 2 87 4.98e-18 76.3
MS.gene71433.t1 AT5G51870 51.389 72 35 0 5 76 21 92 6.16e-18 75.5
MS.gene71433.t1 AT4G09960 43.878 98 50 2 9 101 2 99 6.35e-18 76.3
MS.gene71433.t1 AT4G09960 43.878 98 50 2 9 101 3 100 6.80e-18 76.3
MS.gene71433.t1 AT2G45660 50.000 68 34 0 10 77 3 70 7.93e-18 74.3
MS.gene71433.t1 AT4G09960 43.878 98 50 2 9 101 12 109 8.32e-18 76.3
MS.gene71433.t1 AT4G24540 50.000 68 34 0 9 76 2 69 9.33e-18 75.5
MS.gene71433.t1 AT5G51870 53.731 67 31 0 10 76 3 69 1.36e-17 74.3
MS.gene71433.t1 AT4G09960 45.349 86 46 1 9 93 28 113 1.47e-17 75.9
MS.gene71433.t1 AT4G22950 44.156 77 43 0 10 86 3 79 1.48e-17 73.9
MS.gene71433.t1 AT5G51870 53.731 67 31 0 10 76 3 69 1.74e-17 74.7
MS.gene71433.t1 AT5G51860 39.604 101 61 0 10 110 3 103 1.90e-17 74.3
MS.gene71433.t1 AT2G45660 50.000 68 34 0 10 77 3 70 2.35e-17 74.3
MS.gene71433.t1 AT5G51870 53.731 67 31 0 10 76 3 69 2.40e-17 74.7
MS.gene71433.t1 AT4G09960 45.349 86 46 1 9 93 97 182 2.53e-17 75.9
MS.gene71433.t1 AT5G51860 39.604 101 61 0 10 110 3 103 2.59e-17 74.3
MS.gene71433.t1 AT5G51870 53.731 67 31 0 10 76 13 79 2.87e-17 74.3
MS.gene71433.t1 AT5G13790 52.941 68 32 0 9 76 2 69 5.17e-17 74.3
MS.gene71433.t1 AT5G13790 52.941 68 32 0 9 76 2 69 5.65e-17 74.3
MS.gene71433.t1 AT4G22950 46.479 71 38 0 10 80 3 73 7.09e-17 73.2
MS.gene71433.t1 AT4G22950 46.479 71 38 0 10 80 3 73 7.09e-17 73.2
MS.gene71433.t1 AT4G18960 37.931 116 70 2 2 115 11 126 8.12e-17 73.6
MS.gene71433.t1 AT3G57230 47.059 68 36 0 9 76 2 69 8.80e-17 71.2
MS.gene71433.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.25e-16 69.3
MS.gene71433.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.73e-16 70.5
MS.gene71433.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.73e-16 70.5
MS.gene71433.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.73e-16 70.5
MS.gene71433.t1 AT3G57390 48.529 68 35 0 9 76 2 69 3.11e-16 71.6
MS.gene71433.t1 AT1G77980 49.296 71 35 1 9 78 2 72 3.86e-16 72.8
MS.gene71433.t1 AT5G62165 49.254 67 34 0 10 76 3 69 4.62e-16 69.7
MS.gene71433.t1 AT5G62165 49.254 67 34 0 10 76 3 69 4.62e-16 69.7
MS.gene71433.t1 AT5G62165 49.254 67 34 0 10 76 3 69 4.62e-16 69.7
MS.gene71433.t1 AT5G62165 49.254 67 34 0 10 76 3 69 4.62e-16 69.7
MS.gene71433.t1 AT5G62165 49.254 67 34 0 10 76 3 69 4.62e-16 69.7
MS.gene71433.t1 AT3G57390 48.529 68 35 0 9 76 2 69 5.09e-16 71.6
MS.gene71433.t1 AT2G22540 48.529 68 35 0 9 76 2 69 5.97e-16 71.2
MS.gene71433.t1 AT2G22540 48.529 68 35 0 9 76 2 69 5.97e-16 71.2
MS.gene71433.t1 AT3G57230 47.059 68 36 0 9 76 2 69 6.10e-16 71.2
MS.gene71433.t1 AT3G57230 47.059 68 36 0 9 76 2 69 6.10e-16 71.2
MS.gene71433.t1 AT1G17310 53.165 79 35 1 8 86 47 123 6.94e-16 70.5
MS.gene71433.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.74e-16 70.1
MS.gene71433.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.74e-16 70.1
MS.gene71433.t1 AT5G62165 49.254 67 34 0 10 76 3 69 8.35e-16 70.5
MS.gene71433.t1 AT5G62165 49.254 67 34 0 10 76 3 69 8.35e-16 70.5
MS.gene71433.t1 AT5G62165 49.254 67 34 0 10 76 3 69 8.35e-16 70.5
MS.gene71433.t1 AT5G10140 47.826 69 35 1 9 76 2 70 8.42e-16 69.3
MS.gene71433.t1 AT1G17310 53.165 79 35 1 8 86 58 134 8.89e-16 70.5
MS.gene71433.t1 AT1G22130 49.296 71 35 1 9 78 2 72 1.01e-15 71.6
MS.gene71433.t1 AT2G42830 43.421 76 43 0 1 76 9 84 1.10e-15 70.5
MS.gene71433.t1 AT2G42830 43.421 76 43 0 1 76 9 84 1.12e-15 70.5
MS.gene71433.t1 AT5G10140 47.826 69 35 1 9 76 2 70 1.16e-15 69.3
MS.gene71433.t1 AT1G28460 37.755 98 61 0 5 102 4 101 1.19e-15 69.3
MS.gene71433.t1 AT3G54340 50.794 63 31 0 9 71 2 64 1.25e-15 70.1
MS.gene71433.t1 AT5G10140 47.826 69 35 1 9 76 2 70 1.41e-15 69.3
MS.gene71433.t1 AT1G29962 43.243 74 42 0 5 78 4 77 1.42e-15 69.3
MS.gene71433.t1 AT3G58780 46.479 71 38 0 6 76 14 84 1.44e-15 70.5
MS.gene71433.t1 AT3G58780 46.479 71 38 0 6 76 20 90 1.58e-15 70.1
MS.gene71433.t1 AT5G10140 47.826 69 35 1 9 76 2 70 1.71e-15 69.3
MS.gene71433.t1 AT1G77950 43.421 76 41 2 9 83 2 76 1.92e-15 70.1
MS.gene71433.t1 AT1G77950 43.421 76 41 2 9 83 2 76 1.92e-15 70.1
MS.gene71433.t1 AT1G77950 43.421 76 41 2 9 83 2 76 1.92e-15 70.1
MS.gene71433.t1 AT1G77950 43.421 76 41 2 9 83 2 76 1.92e-15 70.1
MS.gene71433.t1 AT3G61120 48.529 68 35 0 9 76 2 69 2.40e-15 69.7
MS.gene71433.t1 AT3G58780 46.479 71 38 0 6 76 14 84 2.60e-15 70.1
MS.gene71433.t1 AT4G37940 45.588 68 37 0 9 76 2 69 2.83e-15 68.2
MS.gene71433.t1 AT4G37940 45.588 68 37 0 9 76 2 69 3.31e-15 68.9
MS.gene71433.t1 AT4G37940 45.588 68 37 0 9 76 2 69 3.44e-15 68.9
MS.gene71433.t1 AT5G23260 49.333 75 36 1 5 77 14 88 4.80e-15 68.9
MS.gene71433.t1 AT3G30260 34.615 104 61 2 9 105 2 105 4.85e-15 68.9
MS.gene71433.t1 AT5G23260 49.333 75 36 1 5 77 14 88 5.00e-15 68.9
MS.gene71433.t1 AT2G22630 45.588 68 37 0 9 76 2 69 7.53e-15 68.2
MS.gene71433.t1 AT2G22630 45.588 68 37 0 9 76 2 69 7.53e-15 68.2
MS.gene71433.t1 AT1G26310 36.697 109 55 2 9 103 2 110 7.61e-15 68.6
MS.gene71433.t1 AT4G11880 45.833 72 38 1 10 80 3 74 8.70e-15 67.0
MS.gene71433.t1 AT4G11880 45.833 72 38 1 10 80 3 74 8.70e-15 67.0
MS.gene71433.t1 AT5G60910 46.377 69 36 1 9 76 2 70 9.41e-15 68.2
MS.gene71433.t1 AT2G14210 46.377 69 36 1 9 76 2 70 1.16e-14 67.8
MS.gene71433.t1 AT5G65050 47.826 69 35 1 9 76 2 70 1.17e-14 66.6
MS.gene71433.t1 AT1G47760 37.864 103 50 2 9 111 2 90 1.31e-14 66.6
MS.gene71433.t1 AT5G20240 46.479 71 36 1 9 79 2 70 1.32e-14 65.9
MS.gene71433.t1 AT4G11880 45.833 72 38 1 10 80 3 74 1.35e-14 67.4
MS.gene71433.t1 AT4G11880 45.833 72 38 1 10 80 3 74 1.35e-14 67.4
MS.gene71433.t1 AT2G14210 46.377 69 36 1 9 76 2 70 1.50e-14 67.4
MS.gene71433.t1 AT5G20240 46.479 71 36 1 9 79 2 70 2.24e-14 66.6
MS.gene71433.t1 AT5G23260 50.704 71 33 1 9 77 2 72 2.36e-14 67.0
MS.gene71433.t1 AT2G03710 53.571 56 26 0 9 64 2 57 2.46e-14 65.9
MS.gene71433.t1 AT5G23260 50.704 71 33 1 9 77 2 72 2.55e-14 67.0
MS.gene71433.t1 AT2G22540 54.545 55 25 0 10 64 3 57 2.84e-14 66.6
MS.gene71433.t1 AT5G65050 47.826 69 35 1 9 76 2 70 3.13e-14 65.9
MS.gene71433.t1 AT5G65050 47.826 69 35 1 9 76 2 70 3.14e-14 65.9
MS.gene71433.t1 AT5G65050 47.826 69 35 1 9 76 2 70 3.41e-14 65.5
MS.gene71433.t1 AT1G69120 43.478 69 38 1 9 76 2 70 4.34e-14 66.2
MS.gene71433.t1 AT5G15800 46.377 69 36 1 9 76 2 70 5.54e-14 66.2
MS.gene71433.t1 AT2G03710 53.571 56 26 0 9 64 2 57 7.08e-14 65.9
MS.gene71433.t1 AT2G03710 53.571 56 26 0 9 64 2 57 7.68e-14 65.9
MS.gene71433.t1 AT1G69120 43.478 69 38 1 9 76 2 70 8.69e-14 65.5
MS.gene71433.t1 AT5G15800 46.377 69 36 1 9 76 2 70 9.11e-14 65.5
MS.gene71433.t1 AT3G02310 46.377 69 36 1 9 76 2 70 1.04e-13 64.7
MS.gene71433.t1 AT1G24260 51.786 56 27 0 9 64 2 57 1.14e-13 65.1
MS.gene71433.t1 AT1G24260 51.786 56 27 0 9 64 2 57 1.15e-13 65.1
MS.gene71433.t1 AT1G24260 51.786 56 27 0 9 64 2 57 1.23e-13 65.1
MS.gene71433.t1 AT5G65060 46.377 69 36 1 9 76 2 70 1.53e-13 63.9
MS.gene71433.t1 AT5G65060 46.377 69 36 1 9 76 2 70 1.86e-13 63.5
MS.gene71433.t1 AT3G58780 47.541 61 32 0 6 66 14 74 1.94e-13 64.3
MS.gene71433.t1 AT5G65060 46.377 69 36 1 9 76 2 70 1.95e-13 63.9
MS.gene71433.t1 AT3G58780 47.541 61 32 0 6 66 14 74 2.33e-13 64.7
MS.gene71433.t1 AT5G65070 40.580 69 40 1 9 76 2 70 2.52e-13 62.4
MS.gene71433.t1 AT3G02310 51.786 56 27 0 9 64 2 57 2.80e-13 64.3
MS.gene71433.t1 AT5G65070 40.580 69 40 1 9 76 2 70 4.94e-13 62.8
MS.gene71433.t1 AT1G71692 43.478 69 38 1 10 77 3 71 8.28e-13 62.4
MS.gene71433.t1 AT1G46408 46.753 77 37 2 10 82 5 81 1.00e-12 62.8
MS.gene71433.t1 AT5G65070 40.580 69 40 1 9 76 2 70 1.04e-12 62.4
MS.gene71433.t1 AT5G49420 37.624 101 55 3 5 98 3 102 1.19e-12 63.2
MS.gene71433.t1 AT5G65070 36.047 86 53 2 9 92 2 87 1.23e-12 62.0
MS.gene71433.t1 AT1G28450 39.189 74 45 0 5 78 4 77 1.59e-12 61.2
MS.gene71433.t1 AT5G65070 45.614 57 31 0 9 65 2 58 5.40e-12 60.5
MS.gene71433.t1 AT5G49490 41.026 78 42 1 5 78 41 118 6.96e-12 60.8
MS.gene71433.t1 AT4G37435 38.889 72 43 1 9 79 2 73 1.01e-11 58.9
MS.gene71433.t1 AT1G18750 38.961 77 44 2 9 83 2 77 1.16e-11 60.5
MS.gene71433.t1 AT1G18750 38.961 77 44 2 9 83 2 77 1.30e-11 60.1
MS.gene71433.t1 AT1G18750 38.961 77 44 2 9 83 2 77 1.35e-11 60.1
MS.gene71433.t1 AT5G38620 41.096 73 39 1 10 78 6 78 2.00e-11 59.7
MS.gene71433.t1 AT1G60920 43.038 79 38 3 10 82 5 82 2.03e-11 58.5
MS.gene71433.t1 AT5G65080 39.130 69 41 1 9 76 9 77 3.01e-11 57.8
MS.gene71433.t1 AT5G65080 42.105 57 33 0 6 62 6 62 7.03e-11 57.0

Find 17 sgRNAs with CRISPR-Local

Find 20 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCATTAAGCTCGCGCAATT+TGG 0.249353 1.3:-54037476 None:intergenic
AGCGAGCTTTGCGCCCTTTG+TGG 0.324077 1.3:+54037304 MS.gene71433:CDS
CCTATGACTGTATCAACATT+TGG 0.327027 1.3:-54037385 None:intergenic
CTATGACTGTATCAACATTT+GGG 0.424254 1.3:-54037384 None:intergenic
CCAAATGTTGATACAGTCAT+AGG 0.480475 1.3:+54037385 MS.gene71433:CDS
AGCAATATATGCACCACAAA+GGG 0.504704 1.3:-54037317 None:intergenic
CATAGGTCGCTATCTCTCTC+AGG 0.517223 1.3:+54037402 MS.gene71433:CDS
GCTCGCTAGCTTTCTTGAAG+AGG 0.540970 1.3:-54037288 None:intergenic
AATGAAAACACCTTCTCACT+AGG 0.561050 1.3:-54037355 None:intergenic
TGGCACCATGCAATTCATTG+AGG 0.607542 1.3:+54037441 MS.gene71433:CDS
TGTATTCTCACCTAGTGAGA+AGG 0.623074 1.3:+54037345 MS.gene71433:CDS
ATAAGCCTCAATGAATTGCA+TGG 0.632939 1.3:-54037446 None:intergenic
ACTTTCTCGAAGCGTCGTAG+TGG 0.635248 1.3:+54037265 MS.gene71433:CDS
GAGCAATATATGCACCACAA+AGG 0.637326 1.3:-54037318 None:intergenic
TCGAGCGGAAAGAAAAGTCA+AGG 0.637604 1.3:+54037190 MS.gene71433:CDS
TGTGCTTAAATCATGTCGAG+CGG 0.666587 1.3:+54037175 None:intergenic
CAGGTACCACCTCAAAACAA+TGG 0.668018 1.3:+54037421 MS.gene71433:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATTTTT+TGG - chr1.3:54037219-54037238 None:intergenic 15.0%
CTATGACTGTATCAACATTT+GGG - chr1.3:54037387-54037406 None:intergenic 30.0%
AATGAAAACACCTTCTCACT+AGG - chr1.3:54037358-54037377 None:intergenic 35.0%
AGCAATATATGCACCACAAA+GGG - chr1.3:54037320-54037339 None:intergenic 35.0%
ATAAGCCTCAATGAATTGCA+TGG - chr1.3:54037449-54037468 None:intergenic 35.0%
CCAAATGTTGATACAGTCAT+AGG + chr1.3:54037385-54037404 MS.gene71433:CDS 35.0%
CCTATGACTGTATCAACATT+TGG - chr1.3:54037388-54037407 None:intergenic 35.0%
!!! AGTGAGAAGGTGTTTTCATT+TGG + chr1.3:54037358-54037377 MS.gene71433:CDS 35.0%
GAGCAATATATGCACCACAA+AGG - chr1.3:54037321-54037340 None:intergenic 40.0%
TGTATTCTCACCTAGTGAGA+AGG + chr1.3:54037345-54037364 MS.gene71433:CDS 40.0%
AGCATTAAGCTCGCGCAATT+TGG - chr1.3:54037479-54037498 None:intergenic 45.0%
CAGGTACCACCTCAAAACAA+TGG + chr1.3:54037421-54037440 MS.gene71433:CDS 45.0%
TCGAGCGGAAAGAAAAGTCA+AGG + chr1.3:54037190-54037209 MS.gene71433:CDS 45.0%
TGGCACCATGCAATTCATTG+AGG + chr1.3:54037441-54037460 MS.gene71433:CDS 45.0%
!!! ATGGTGCCATTGTTTTGAGG+TGG - chr1.3:54037430-54037449 None:intergenic 45.0%
!!! TGCATGGTGCCATTGTTTTG+AGG - chr1.3:54037433-54037452 None:intergenic 45.0%
CATAGGTCGCTATCTCTCTC+AGG + chr1.3:54037402-54037421 MS.gene71433:CDS 50.0%
!! ACTTTCTCGAAGCGTCGTAG+TGG + chr1.3:54037265-54037284 MS.gene71433:CDS 50.0%
!! GCTCGCTAGCTTTCTTGAAG+AGG - chr1.3:54037291-54037310 None:intergenic 50.0%
AGCGAGCTTTGCGCCCTTTG+TGG + chr1.3:54037304-54037323 MS.gene71433:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 54037187 54037540 54037187 ID=MS.gene71433
chr1.3 mRNA 54037187 54037540 54037187 ID=MS.gene71433.t1;Parent=MS.gene71433
chr1.3 exon 54037187 54037540 54037187 ID=MS.gene71433.t1.exon1;Parent=MS.gene71433.t1
chr1.3 CDS 54037187 54037540 54037187 ID=cds.MS.gene71433.t1;Parent=MS.gene71433.t1
Gene Sequence

>MS.gene71433

ATGTCGAGCGGAAAGAAAAGTCAAGGTCGCCAAAAAATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGTCGTAGTGGCCTCTTCAAGAAAGCTAGCGAGCTTTGCGCCCTTTGTGGTGCATATATTGCTCACATTGTATTCTCACCTAGTGAGAAGGTGTTTTCATTTGGTCACCCAAATGTTGATACAGTCATAGGTCGCTATCTCTCTCAGGTACCACCTCAAAACAATGGCACCATGCAATTCATTGAGGCTTATTGTAGCACCAAATTGCGCGAGCTTAATGCTATGCTGACTCAAATCAATGATGCACATCGAAAAGAAGCGTGA
Protein sequence

>MS.gene71433.t1

MSSGKKSQGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCALCGAYIAHIVFSPSEKVFSFGHPNVDTVIGRYLSQVPPQNNGTMQFIEAYCSTKLRELNAMLTQINDAHRKEA