Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71515.t1 | RHN51432.1 | 65.1 | 261 | 69 | 5 | 1 | 248 | 1 | 252 | 9.30E-76 | 293.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71515.t1 | Q9T072 | 50.0 | 120 | 54 | 3 | 133 | 248 | 152 | 269 | 3.3e-21 | 103.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71515.t1 | A0A072UAR9 | 65.1 | 261 | 69 | 5 | 1 | 248 | 23 | 274 | 6.7e-76 | 293.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene71515.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71515.t1 | MTR_0250s0040 | 75.806 | 248 | 15 | 2 | 1 | 248 | 1 | 203 | 5.46e-132 | 373 |
MS.gene71515.t1 | MTR_6g047570 | 69.349 | 261 | 58 | 5 | 1 | 248 | 23 | 274 | 1.17e-117 | 340 |
MS.gene71515.t1 | MTR_0011s0260 | 62.590 | 278 | 72 | 6 | 1 | 248 | 23 | 298 | 2.94e-95 | 283 |
MS.gene71515.t1 | MTR_0011s0210 | 61.871 | 278 | 74 | 6 | 1 | 248 | 23 | 298 | 7.78e-94 | 280 |
MS.gene71515.t1 | MTR_4g067010 | 60.784 | 255 | 74 | 8 | 1 | 248 | 24 | 259 | 5.91e-90 | 269 |
MS.gene71515.t1 | MTR_4g066460 | 59.615 | 260 | 77 | 8 | 1 | 248 | 24 | 267 | 1.84e-88 | 265 |
MS.gene71515.t1 | MTR_6g047550 | 65.198 | 227 | 43 | 6 | 1 | 200 | 23 | 240 | 3.66e-84 | 252 |
MS.gene71515.t1 | MTR_4g066380 | 57.895 | 266 | 70 | 7 | 1 | 248 | 23 | 264 | 1.97e-75 | 232 |
MS.gene71515.t1 | MTR_0246s0020 | 45.215 | 303 | 103 | 9 | 1 | 248 | 24 | 318 | 2.34e-62 | 200 |
MS.gene71515.t1 | MTR_0246s0020 | 45.215 | 303 | 103 | 9 | 1 | 248 | 24 | 318 | 2.98e-62 | 200 |
MS.gene71515.t1 | MTR_0246s0050 | 40.925 | 281 | 109 | 13 | 1 | 248 | 3 | 259 | 6.95e-41 | 143 |
MS.gene71515.t1 | MTR_4g098035 | 40.925 | 281 | 109 | 13 | 1 | 248 | 24 | 280 | 9.26e-41 | 143 |
MS.gene71515.t1 | MTR_5g014560 | 38.153 | 249 | 108 | 9 | 9 | 247 | 33 | 245 | 5.87e-37 | 132 |
MS.gene71515.t1 | MTR_5g014520 | 40.000 | 250 | 130 | 6 | 9 | 248 | 33 | 272 | 2.71e-32 | 120 |
MS.gene71515.t1 | MTR_4g097940 | 50.847 | 118 | 55 | 2 | 131 | 248 | 153 | 267 | 6.29e-31 | 117 |
MS.gene71515.t1 | MTR_5g014600 | 36.111 | 252 | 133 | 9 | 26 | 249 | 27 | 278 | 4.33e-30 | 115 |
MS.gene71515.t1 | MTR_4g097920 | 45.763 | 118 | 61 | 1 | 131 | 248 | 138 | 252 | 1.46e-28 | 110 |
MS.gene71515.t1 | MTR_4g097920 | 45.763 | 118 | 61 | 1 | 131 | 248 | 153 | 267 | 1.86e-28 | 110 |
MS.gene71515.t1 | MTR_2g010450 | 41.722 | 151 | 70 | 3 | 110 | 249 | 151 | 294 | 3.90e-28 | 110 |
MS.gene71515.t1 | MTR_4g097950 | 47.445 | 137 | 59 | 4 | 124 | 250 | 61 | 194 | 5.96e-28 | 107 |
MS.gene71515.t1 | MTR_4g092700 | 45.802 | 131 | 59 | 3 | 125 | 249 | 150 | 274 | 7.19e-27 | 106 |
MS.gene71515.t1 | MTR_5g014640 | 49.167 | 120 | 56 | 3 | 130 | 248 | 151 | 266 | 2.93e-25 | 102 |
MS.gene71515.t1 | MTR_4g009540 | 40.854 | 164 | 76 | 8 | 102 | 248 | 114 | 273 | 4.71e-25 | 101 |
MS.gene71515.t1 | MTR_4g009540 | 40.854 | 164 | 76 | 8 | 102 | 248 | 114 | 273 | 7.45e-25 | 100 |
MS.gene71515.t1 | MTR_4g009110 | 45.082 | 122 | 58 | 5 | 133 | 248 | 174 | 292 | 1.77e-24 | 100 |
MS.gene71515.t1 | MTR_2g104490 | 39.394 | 132 | 74 | 4 | 116 | 245 | 120 | 247 | 2.16e-21 | 90.9 |
MS.gene71515.t1 | MTR_2g104490 | 39.394 | 132 | 74 | 4 | 116 | 245 | 120 | 247 | 2.25e-21 | 91.3 |
MS.gene71515.t1 | MTR_8g009020 | 35.519 | 183 | 101 | 6 | 77 | 248 | 89 | 265 | 3.53e-21 | 90.9 |
MS.gene71515.t1 | MTR_7g080780 | 38.776 | 147 | 81 | 2 | 101 | 247 | 120 | 257 | 3.83e-21 | 90.9 |
MS.gene71515.t1 | MTR_7g080780 | 38.776 | 147 | 81 | 2 | 101 | 247 | 133 | 270 | 4.85e-21 | 90.5 |
MS.gene71515.t1 | MTR_2g104550 | 37.956 | 137 | 78 | 3 | 116 | 248 | 121 | 254 | 1.19e-20 | 89.4 |
MS.gene71515.t1 | MTR_8g069740 | 36.691 | 139 | 84 | 2 | 114 | 248 | 92 | 230 | 8.50e-20 | 86.3 |
MS.gene71515.t1 | MTR_2g104560 | 39.496 | 119 | 62 | 3 | 134 | 248 | 55 | 167 | 8.35e-18 | 80.1 |
MS.gene71515.t1 | MTR_2g104590 | 34.459 | 148 | 78 | 4 | 110 | 239 | 32 | 178 | 1.85e-17 | 79.0 |
MS.gene71515.t1 | MTR_2g104650 | 33.333 | 174 | 86 | 5 | 89 | 248 | 55 | 212 | 2.69e-16 | 76.6 |
MS.gene71515.t1 | MTR_8g067280 | 35.065 | 154 | 80 | 5 | 112 | 246 | 434 | 586 | 5.10e-16 | 77.4 |
MS.gene71515.t1 | MTR_8g024770 | 33.613 | 119 | 65 | 3 | 133 | 242 | 279 | 392 | 1.94e-15 | 75.5 |
MS.gene71515.t1 | MTR_8g024790 | 31.544 | 149 | 75 | 4 | 115 | 244 | 263 | 403 | 1.22e-14 | 73.2 |
MS.gene71515.t1 | MTR_8g027495 | 50.769 | 65 | 32 | 0 | 133 | 197 | 458 | 522 | 4.32e-14 | 71.6 |
MS.gene71515.t1 | MTR_5g030430 | 32.877 | 146 | 78 | 5 | 119 | 246 | 474 | 617 | 7.59e-14 | 71.2 |
MS.gene71515.t1 | MTR_8g009010 | 36.207 | 116 | 38 | 2 | 132 | 247 | 133 | 212 | 8.09e-14 | 70.1 |
MS.gene71515.t1 | MTR_7g096350 | 32.484 | 157 | 80 | 6 | 56 | 186 | 252 | 408 | 1.51e-13 | 70.1 |
MS.gene71515.t1 | MTR_1g072320 | 39.759 | 83 | 46 | 1 | 119 | 197 | 452 | 534 | 1.60e-13 | 70.1 |
MS.gene71515.t1 | MTR_7g117670 | 53.448 | 58 | 27 | 0 | 133 | 190 | 402 | 459 | 1.91e-13 | 69.7 |
MS.gene71515.t1 | MTR_8g098275 | 42.466 | 73 | 42 | 0 | 125 | 197 | 393 | 465 | 3.85e-13 | 68.9 |
MS.gene71515.t1 | MTR_8g098275 | 42.466 | 73 | 42 | 0 | 125 | 197 | 300 | 372 | 3.86e-13 | 68.9 |
MS.gene71515.t1 | MTR_8g098275 | 42.466 | 73 | 42 | 0 | 125 | 197 | 236 | 308 | 4.72e-13 | 68.6 |
MS.gene71515.t1 | MTR_3g498695 | 30.667 | 150 | 88 | 3 | 112 | 248 | 277 | 423 | 4.12e-12 | 65.9 |
MS.gene71515.t1 | MTR_3g498695 | 30.667 | 150 | 88 | 3 | 112 | 248 | 277 | 423 | 4.16e-12 | 65.9 |
MS.gene71515.t1 | MTR_5g014550 | 43.820 | 89 | 42 | 3 | 163 | 247 | 54 | 138 | 1.25e-11 | 62.4 |
MS.gene71515.t1 | MTR_2g104530 | 29.167 | 192 | 99 | 7 | 67 | 248 | 52 | 216 | 7.03e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71515.t1 | AT4G37850 | 44.828 | 145 | 66 | 4 | 116 | 248 | 127 | 269 | 4.32e-29 | 112 |
MS.gene71515.t1 | AT4G37850 | 44.828 | 145 | 66 | 4 | 116 | 248 | 127 | 269 | 4.32e-29 | 112 |
MS.gene71515.t1 | AT2G22760 | 41.176 | 136 | 68 | 5 | 124 | 248 | 103 | 237 | 2.18e-24 | 99.0 |
MS.gene71515.t1 | AT2G22760 | 41.176 | 136 | 68 | 5 | 124 | 248 | 103 | 237 | 2.40e-24 | 99.0 |
MS.gene71515.t1 | AT2G22750 | 46.377 | 138 | 66 | 3 | 117 | 248 | 139 | 274 | 4.87e-23 | 96.3 |
MS.gene71515.t1 | AT2G22750 | 46.377 | 138 | 66 | 3 | 117 | 248 | 111 | 246 | 5.28e-23 | 95.5 |
MS.gene71515.t1 | AT2G22750 | 46.377 | 138 | 66 | 3 | 117 | 248 | 111 | 246 | 5.47e-23 | 95.5 |
MS.gene71515.t1 | AT2G22750 | 46.377 | 138 | 66 | 3 | 117 | 248 | 135 | 270 | 5.51e-23 | 95.9 |
MS.gene71515.t1 | AT2G22750 | 46.377 | 138 | 66 | 3 | 117 | 248 | 139 | 274 | 5.87e-23 | 95.9 |
MS.gene71515.t1 | AT2G22770 | 36.747 | 166 | 77 | 6 | 110 | 248 | 98 | 262 | 7.34e-18 | 81.6 |
MS.gene71515.t1 | AT1G32640 | 36.975 | 119 | 66 | 2 | 133 | 246 | 452 | 566 | 2.83e-17 | 81.3 |
MS.gene71515.t1 | AT4G17880 | 38.060 | 134 | 76 | 4 | 119 | 246 | 397 | 529 | 4.20e-17 | 80.9 |
MS.gene71515.t1 | AT5G46760 | 33.333 | 144 | 73 | 6 | 119 | 246 | 396 | 532 | 1.36e-15 | 76.3 |
MS.gene71515.t1 | AT4G16430 | 43.902 | 82 | 41 | 1 | 117 | 193 | 299 | 380 | 9.54e-14 | 70.9 |
MS.gene71515.t1 | AT2G46510 | 45.570 | 79 | 38 | 2 | 119 | 192 | 376 | 454 | 1.28e-13 | 70.5 |
MS.gene71515.t1 | AT1G01260 | 31.677 | 161 | 89 | 3 | 74 | 227 | 378 | 524 | 1.77e-13 | 70.1 |
MS.gene71515.t1 | AT1G01260 | 31.677 | 161 | 89 | 3 | 74 | 227 | 378 | 524 | 1.77e-13 | 70.1 |
MS.gene71515.t1 | AT1G01260 | 31.677 | 161 | 89 | 3 | 74 | 227 | 378 | 524 | 1.77e-13 | 70.1 |
MS.gene71515.t1 | AT1G63650 | 29.104 | 134 | 77 | 3 | 133 | 248 | 405 | 538 | 2.60e-12 | 66.6 |
MS.gene71515.t1 | AT1G63650 | 29.104 | 134 | 77 | 3 | 133 | 248 | 405 | 538 | 2.60e-12 | 66.6 |
MS.gene71515.t1 | AT1G63650 | 29.104 | 134 | 77 | 3 | 133 | 248 | 405 | 538 | 2.60e-12 | 66.6 |
MS.gene71515.t1 | AT5G41315 | 36.047 | 86 | 51 | 1 | 133 | 214 | 446 | 531 | 1.60e-11 | 64.3 |
MS.gene71515.t1 | AT5G41315 | 36.047 | 86 | 51 | 1 | 133 | 214 | 441 | 526 | 1.61e-11 | 64.3 |
MS.gene71515.t1 | AT5G41315 | 36.047 | 86 | 51 | 1 | 133 | 214 | 449 | 534 | 1.74e-11 | 64.3 |
MS.gene71515.t1 | AT5G46830 | 47.826 | 69 | 32 | 1 | 130 | 194 | 336 | 404 | 4.90e-11 | 62.8 |
Find 40 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAATTTGTAGTGGATGAATT+TGG | 0.179475 | 7.2:-68332066 | None:intergenic |
CAAGTGGAAGCAAGAGTCTT+AGG | 0.227099 | 7.2:+68333412 | MS.gene71515:CDS |
CCCGAATTTCCTTATAGATT+TGG | 0.259158 | 7.2:+68331852 | MS.gene71515:CDS |
TCTTGTTCCTAACCTTAAAA+AGG | 0.267726 | 7.2:+68332278 | MS.gene71515:CDS |
TCCAAATCTATAAGGAAATT+CGG | 0.272428 | 7.2:-68331853 | None:intergenic |
AATTTGTAGTGGATGAATTT+GGG | 0.291366 | 7.2:-68332065 | None:intergenic |
ACAAATTCCTTACAATTTAG+TGG | 0.309622 | 7.2:+68332081 | MS.gene71515:CDS |
GAGGAGTTAGAAGAAAGTTT+TGG | 0.325000 | 7.2:-68332009 | None:intergenic |
CAGAAGAGTCATCGAGAAAA+AGG | 0.350658 | 7.2:+68332169 | MS.gene71515:CDS |
TTCAAATCCACTAAATTGTA+AGG | 0.351709 | 7.2:-68332088 | None:intergenic |
ATCAACAGTGTTTGACTTCA+AGG | 0.362949 | 7.2:+68331923 | MS.gene71515:CDS |
GAAGCTCTTCCAAATCTATA+AGG | 0.363733 | 7.2:-68331861 | None:intergenic |
CCAAATCTATAAGGAAATTC+GGG | 0.373199 | 7.2:-68331852 | None:intergenic |
ACTCTTGCTTCCACTTGAAA+TGG | 0.394913 | 7.2:-68333406 | None:intergenic |
ATCACTATAAATGCCTGGTT+TGG | 0.415809 | 7.2:-68333335 | None:intergenic |
ACCAGTGTCTCCAACTGAAA+TGG | 0.420736 | 7.2:+68332119 | MS.gene71515:CDS |
GAGAGCCTTCATAGTGTTGT+TGG | 0.422784 | 7.2:+68333379 | MS.gene71515:CDS |
TAGGGAAATATATGTTGATT+CGG | 0.438258 | 7.2:+68333431 | MS.gene71515:CDS |
AAGTGGAAGCAAGAGTCTTA+GGG | 0.455524 | 7.2:+68333413 | MS.gene71515:CDS |
GGATCCAATGCCAAGAGCGC+AGG | 0.466761 | 7.2:+68333452 | MS.gene71515:CDS |
TCCATTTCAGTTGGAGACAC+TGG | 0.482760 | 7.2:-68332120 | None:intergenic |
AAAAGGTCTCGTGGTAATCA+TGG | 0.510954 | 7.2:+68332186 | MS.gene71515:CDS |
TCCAATGCCAAGAGCGCAGG+GGG | 0.515704 | 7.2:+68333455 | MS.gene71515:CDS |
TTGTCATCACTATAAATGCC+TGG | 0.527391 | 7.2:-68333340 | None:intergenic |
GATCCAATGCCAAGAGCGCA+GGG | 0.534648 | 7.2:+68333453 | MS.gene71515:CDS |
GTAAACCAACAACACTATGA+AGG | 0.536411 | 7.2:-68333384 | None:intergenic |
CGAATACAATTTAATTGCTG+AGG | 0.543999 | 7.2:+68331822 | MS.gene71515:CDS |
TGGAATTTGAAACTGAAAAG+AGG | 0.546618 | 7.2:-68332028 | None:intergenic |
ATTGTGTTGCTGAGAGCTGT+TGG | 0.550386 | 7.2:-68331952 | None:intergenic |
TCATGGTCATGATCATATCA+TGG | 0.552733 | 7.2:+68332203 | MS.gene71515:CDS |
CAAGTGGTTGTAACCAAACC+AGG | 0.578107 | 7.2:+68333322 | MS.gene71515:CDS |
TTTGGGGTGTTGTCAAAACA+TGG | 0.585137 | 7.2:-68332048 | None:intergenic |
AAGGCTCTCATCACATGAAG+AGG | 0.585610 | 7.2:-68333365 | None:intergenic |
TGTTGGTTTACCATTTCAAG+TGG | 0.603001 | 7.2:+68333396 | MS.gene71515:CDS |
GTTGCTGAGAGCTGTTGGAG+TGG | 0.604151 | 7.2:-68331947 | None:intergenic |
AAATTGTAAGGAATTTGTAG+TGG | 0.612033 | 7.2:-68332076 | None:intergenic |
AACAAAGATAGACTCACAAG+TGG | 0.632458 | 7.2:+68333306 | MS.gene71515:CDS |
ATTTGTAGTGGATGAATTTG+GGG | 0.649171 | 7.2:-68332064 | None:intergenic |
ATCCAATGCCAAGAGCGCAG+GGG | 0.685086 | 7.2:+68333454 | MS.gene71515:CDS |
CCAATGCCAAGAGCGCAGGG+GGG | 0.741074 | 7.2:+68333456 | MS.gene71515:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTCATTCAAATAATTTAA+TGG | + | chr7.2:68332994-68333013 | MS.gene71515:intron | 10.0% |
!!! | AAAATTTAAAACATAATTAG+TGG | + | chr7.2:68333025-68333044 | MS.gene71515:intron | 10.0% |
!!! | ATCAAAAAATATTCAATTTT+TGG | - | chr7.2:68332698-68332717 | None:intergenic | 10.0% |
!!! | TCAAAAAATATTCAATTTTT+GGG | - | chr7.2:68332697-68332716 | None:intergenic | 10.0% |
!! | AAAAATAATCGTCAATTTAT+TGG | + | chr7.2:68332819-68332838 | MS.gene71515:intron | 15.0% |
!! | AGTAAATGAATAAAGAAATA+TGG | + | chr7.2:68332899-68332918 | MS.gene71515:intron | 15.0% |
!! | ATACAAAAATACTATAATCT+TGG | + | chr7.2:68333140-68333159 | MS.gene71515:intron | 15.0% |
!! | TAAAAAAACAAAAATTAGTG+AGG | - | chr7.2:68332479-68332498 | None:intergenic | 15.0% |
!! | ATAATCTTGGTTACATTATT+TGG | + | chr7.2:68333153-68333172 | MS.gene71515:intron | 20.0% |
!! | ATGAATAAAGAAATATGGTT+TGG | + | chr7.2:68332904-68332923 | MS.gene71515:intron | 20.0% |
!! | CGATATTGTAAAAATATGTT+AGG | + | chr7.2:68333195-68333214 | MS.gene71515:intron | 20.0% |
!! | TACTAGAAAAAGCAAAATTA+GGG | + | chr7.2:68332348-68332367 | MS.gene71515:intron | 20.0% |
!! | TATTGTAAAAATATGTTAGG+TGG | + | chr7.2:68333198-68333217 | MS.gene71515:intron | 20.0% |
!!! | TTACTTATTCTACCTTTTTA+AGG | - | chr7.2:68332293-68332312 | None:intergenic | 20.0% |
! | AAATTGTAAGGAATTTGTAG+TGG | - | chr7.2:68332079-68332098 | None:intergenic | 25.0% |
! | ACAAATTCCTTACAATTTAG+TGG | + | chr7.2:68332081-68332100 | MS.gene71515:CDS | 25.0% |
! | ACGCTATATTTACAAATTGA+AGG | - | chr7.2:68332869-68332888 | None:intergenic | 25.0% |
! | CGCTATATTTACAAATTGAA+GGG | - | chr7.2:68332868-68332887 | None:intergenic | 25.0% |
! | CTACTAGAAAAAGCAAAATT+AGG | + | chr7.2:68332347-68332366 | MS.gene71515:intron | 25.0% |
! | GAAATCTCTCACAAATTATT+TGG | + | chr7.2:68332395-68332414 | MS.gene71515:intron | 25.0% |
! | TCCAAATCTATAAGGAAATT+CGG | - | chr7.2:68331856-68331875 | None:intergenic | 25.0% |
! | TTAAAACATAATTAGTGGTG+TGG | + | chr7.2:68333030-68333049 | MS.gene71515:intron | 25.0% |
! | TTCAAATCCACTAAATTGTA+AGG | - | chr7.2:68332091-68332110 | None:intergenic | 25.0% |
!! | GTGGTAAAAAATACTTTTGA+CGG | + | chr7.2:68333052-68333071 | MS.gene71515:intron | 25.0% |
!! | TAGGGAAATATATGTTGATT+CGG | + | chr7.2:68333431-68333450 | MS.gene71515:CDS | 25.0% |
!! | TTCATATTTTCCATTTCAGT+TGG | - | chr7.2:68332132-68332151 | None:intergenic | 25.0% |
!!! | AATTTGTAGTGGATGAATTT+GGG | - | chr7.2:68332068-68332087 | None:intergenic | 25.0% |
!!! | TATTCTACCTTTTTAAGGTT+AGG | - | chr7.2:68332288-68332307 | None:intergenic | 25.0% |
CCAAATCTATAAGGAAATTC+GGG | - | chr7.2:68331855-68331874 | None:intergenic | 30.0% | |
CGAATACAATTTAATTGCTG+AGG | + | chr7.2:68331822-68331841 | MS.gene71515:CDS | 30.0% | |
TAGAAAAAGCAAAATTAGGG+AGG | + | chr7.2:68332351-68332370 | MS.gene71515:intron | 30.0% | |
TAGTGAGGAAAATTTAGTGA+GGG | - | chr7.2:68332464-68332483 | None:intergenic | 30.0% | |
TCTTGTTCCTAACCTTAAAA+AGG | + | chr7.2:68332278-68332297 | MS.gene71515:CDS | 30.0% | |
TTAGTGAGGAAAATTTAGTG+AGG | - | chr7.2:68332465-68332484 | None:intergenic | 30.0% | |
TTGGTCACAAAATTTAGTGA+CGG | + | chr7.2:68332414-68332433 | MS.gene71515:intron | 30.0% | |
! | TGGAATTTGAAACTGAAAAG+AGG | - | chr7.2:68332031-68332050 | None:intergenic | 30.0% |
!! | ACTGTTGATTGTTTTGTTCT+TGG | - | chr7.2:68331912-68331931 | None:intergenic | 30.0% |
!! | AGAAGAAAGTTTTGGTGAAA+AGG | - | chr7.2:68332004-68332023 | None:intergenic | 30.0% |
!! | ATTTGTAGTGGATGAATTTG+GGG | - | chr7.2:68332067-68332086 | None:intergenic | 30.0% |
!! | CTGTTGATTGTTTTGTTCTT+GGG | - | chr7.2:68331911-68331930 | None:intergenic | 30.0% |
!! | GAATTTGTAGTGGATGAATT+TGG | - | chr7.2:68332069-68332088 | None:intergenic | 30.0% |
!!! | GTTTTAAAAGCTAGCTAAGT+GGG | - | chr7.2:68332326-68332345 | None:intergenic | 30.0% |
!!! | TAAAAAGCGTTTGGAAGTTT+TGG | + | chr7.2:68333267-68333286 | MS.gene71515:CDS | 30.0% |
!!! | TGTTTTAAAAGCTAGCTAAG+TGG | - | chr7.2:68332327-68332346 | None:intergenic | 30.0% |
AAACATAATTAGTGGTGTGG+TGG | + | chr7.2:68333033-68333052 | MS.gene71515:intron | 35.0% | |
AACAAAGATAGACTCACAAG+TGG | + | chr7.2:68333306-68333325 | MS.gene71515:CDS | 35.0% | |
ATCACTATAAATGCCTGGTT+TGG | - | chr7.2:68333338-68333357 | None:intergenic | 35.0% | |
CCCGAATTTCCTTATAGATT+TGG | + | chr7.2:68331852-68331871 | MS.gene71515:CDS | 35.0% | |
GAAGCTCTTCCAAATCTATA+AGG | - | chr7.2:68331864-68331883 | None:intergenic | 35.0% | |
GTAAACCAACAACACTATGA+AGG | - | chr7.2:68333387-68333406 | None:intergenic | 35.0% | |
TCATGGTCATGATCATATCA+TGG | + | chr7.2:68332203-68332222 | MS.gene71515:CDS | 35.0% | |
TTAGGGAGGAAAATTAGTGA+CGG | + | chr7.2:68332365-68332384 | MS.gene71515:intron | 35.0% | |
TTGTCATCACTATAAATGCC+TGG | - | chr7.2:68333343-68333362 | None:intergenic | 35.0% | |
! | ATCAACAGTGTTTGACTTCA+AGG | + | chr7.2:68331923-68331942 | MS.gene71515:CDS | 35.0% |
! | ATTTAGTGACGGAATTTGAG+AGG | + | chr7.2:68332425-68332444 | MS.gene71515:intron | 35.0% |
! | GAGGAGTTAGAAGAAAGTTT+TGG | - | chr7.2:68332012-68332031 | None:intergenic | 35.0% |
! | TTTAGTGACGGAATTTGAGA+GGG | + | chr7.2:68332426-68332445 | MS.gene71515:intron | 35.0% |
!! | GAAAGAGCTTAAAAAGCGTT+TGG | + | chr7.2:68333258-68333277 | MS.gene71515:CDS | 35.0% |
!! | TGTTGGTTTACCATTTCAAG+TGG | + | chr7.2:68333396-68333415 | MS.gene71515:CDS | 35.0% |
AAAAGGTCTCGTGGTAATCA+TGG | + | chr7.2:68332186-68332205 | MS.gene71515:CDS | 40.0% | |
AAGTGGAAGCAAGAGTCTTA+GGG | + | chr7.2:68333413-68333432 | MS.gene71515:CDS | 40.0% | |
ACTCTTGCTTCCACTTGAAA+TGG | - | chr7.2:68333409-68333428 | None:intergenic | 40.0% | |
CAGAAGAGTCATCGAGAAAA+AGG | + | chr7.2:68332169-68332188 | MS.gene71515:CDS | 40.0% | |
! | TTTTCTCGATGACTCTTCTG+AGG | - | chr7.2:68332169-68332188 | None:intergenic | 40.0% |
!! | TTTGGGGTGTTGTCAAAACA+TGG | - | chr7.2:68332051-68332070 | None:intergenic | 40.0% |
AAGGCTCTCATCACATGAAG+AGG | - | chr7.2:68333368-68333387 | None:intergenic | 45.0% | |
ACCAGTGTCTCCAACTGAAA+TGG | + | chr7.2:68332119-68332138 | MS.gene71515:CDS | 45.0% | |
CAAGTGGAAGCAAGAGTCTT+AGG | + | chr7.2:68333412-68333431 | MS.gene71515:CDS | 45.0% | |
CAAGTGGTTGTAACCAAACC+AGG | + | chr7.2:68333322-68333341 | MS.gene71515:CDS | 45.0% | |
GAGAGCCTTCATAGTGTTGT+TGG | + | chr7.2:68333379-68333398 | MS.gene71515:CDS | 45.0% | |
TCATCGAGAAAAAGGTCTCG+TGG | + | chr7.2:68332177-68332196 | MS.gene71515:CDS | 45.0% | |
TCCATTTCAGTTGGAGACAC+TGG | - | chr7.2:68332123-68332142 | None:intergenic | 45.0% | |
! | ATTGTGTTGCTGAGAGCTGT+TGG | - | chr7.2:68331955-68331974 | None:intergenic | 45.0% |
!!! | CATTTATATAATTATTTTAT+AGG | + | chr7.2:68332601-68332620 | MS.gene71515:intron | 5.0% |
GTTGCTGAGAGCTGTTGGAG+TGG | - | chr7.2:68331950-68331969 | None:intergenic | 55.0% | |
! | ATCCAATGCCAAGAGCGCAG+GGG | + | chr7.2:68333454-68333473 | MS.gene71515:CDS | 55.0% |
! | GATCCAATGCCAAGAGCGCA+GGG | + | chr7.2:68333453-68333472 | MS.gene71515:CDS | 55.0% |
TATAAGCCCCCCTGCGCTCT+TGG | - | chr7.2:68333465-68333484 | None:intergenic | 60.0% | |
! | GGATCCAATGCCAAGAGCGC+AGG | + | chr7.2:68333452-68333471 | MS.gene71515:CDS | 60.0% |
! | TCCAATGCCAAGAGCGCAGG+GGG | + | chr7.2:68333455-68333474 | MS.gene71515:CDS | 60.0% |
! | CCAATGCCAAGAGCGCAGGG+GGG | + | chr7.2:68333456-68333475 | MS.gene71515:CDS | 65.0% |
CCCCCCTGCGCTCTTGGCAT+TGG | - | chr7.2:68333459-68333478 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 68331817 | 68333489 | 68331817 | ID=MS.gene71515 |
chr7.2 | mRNA | 68331817 | 68333489 | 68331817 | ID=MS.gene71515.t1;Parent=MS.gene71515 |
chr7.2 | exon | 68331817 | 68332299 | 68331817 | ID=MS.gene71515.t1.exon1;Parent=MS.gene71515.t1 |
chr7.2 | CDS | 68331817 | 68332299 | 68331817 | ID=cds.MS.gene71515.t1;Parent=MS.gene71515.t1 |
chr7.2 | exon | 68333217 | 68333489 | 68333217 | ID=MS.gene71515.t1.exon2;Parent=MS.gene71515.t1 |
chr7.2 | CDS | 68333217 | 68333489 | 68333217 | ID=cds.MS.gene71515.t1;Parent=MS.gene71515.t1 |
Gene Sequence |
Protein sequence |