Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71584.t1 | KEH43987.1 | 92 | 163 | 13 | 0 | 1 | 163 | 1 | 163 | 3.10E-79 | 304.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71584.t1 | Q9SRH9 | 43.0 | 151 | 80 | 2 | 13 | 157 | 54 | 204 | 9.9e-26 | 118.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71584.t1 | A0A072VQC1 | 92.0 | 163 | 13 | 0 | 1 | 163 | 1 | 163 | 2.2e-79 | 304.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene71584.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71584.t1 | MTR_1g105955 | 92.073 | 164 | 13 | 0 | 1 | 164 | 1 | 164 | 5.28e-111 | 315 |
MS.gene71584.t1 | MTR_5g036670 | 45.395 | 152 | 76 | 2 | 13 | 157 | 40 | 191 | 2.08e-32 | 123 |
MS.gene71584.t1 | MTR_5g036670 | 51.351 | 74 | 36 | 0 | 96 | 169 | 44 | 117 | 6.90e-17 | 78.6 |
MS.gene71584.t1 | MTR_3g006150 | 45.806 | 155 | 74 | 3 | 13 | 160 | 5 | 156 | 2.21e-32 | 114 |
MS.gene71584.t1 | MTR_3g006150 | 46.835 | 79 | 38 | 2 | 96 | 173 | 9 | 84 | 2.67e-12 | 62.4 |
MS.gene71584.t1 | MTR_1g105960 | 51.282 | 117 | 38 | 1 | 17 | 133 | 2 | 99 | 2.35e-32 | 112 |
MS.gene71584.t1 | MTR_1g105960 | 62.195 | 82 | 30 | 1 | 96 | 177 | 2 | 82 | 8.35e-27 | 98.6 |
MS.gene71584.t1 | MTR_1g104960 | 38.953 | 172 | 97 | 2 | 5 | 168 | 2 | 173 | 9.51e-32 | 113 |
MS.gene71584.t1 | MTR_1g104960 | 40.964 | 83 | 49 | 0 | 92 | 174 | 10 | 92 | 3.34e-12 | 62.4 |
MS.gene71584.t1 | MTR_3g006065 | 47.742 | 155 | 71 | 4 | 13 | 160 | 5 | 156 | 1.60e-31 | 113 |
MS.gene71584.t1 | MTR_3g006185 | 41.718 | 163 | 83 | 2 | 13 | 163 | 5 | 167 | 2.89e-30 | 109 |
MS.gene71584.t1 | MTR_8g062700 | 42.138 | 159 | 85 | 2 | 6 | 157 | 32 | 190 | 5.48e-30 | 116 |
MS.gene71584.t1 | MTR_8g062700 | 55.405 | 74 | 33 | 0 | 96 | 169 | 43 | 116 | 5.58e-19 | 84.7 |
MS.gene71584.t1 | MTR_8g062700 | 42.138 | 159 | 85 | 2 | 6 | 157 | 32 | 190 | 5.59e-30 | 116 |
MS.gene71584.t1 | MTR_8g062700 | 55.405 | 74 | 33 | 0 | 96 | 169 | 43 | 116 | 5.52e-19 | 84.7 |
MS.gene71584.t1 | MTR_3g006125 | 40.116 | 172 | 78 | 3 | 13 | 165 | 86 | 251 | 5.84e-30 | 111 |
MS.gene71584.t1 | MTR_3g006125 | 52.778 | 72 | 33 | 1 | 9 | 79 | 173 | 244 | 9.19e-16 | 73.6 |
MS.gene71584.t1 | MTR_1g104980 | 38.608 | 158 | 88 | 2 | 18 | 174 | 1 | 150 | 9.81e-30 | 108 |
MS.gene71584.t1 | MTR_1g104980 | 39.241 | 79 | 47 | 1 | 10 | 88 | 65 | 142 | 2.12e-11 | 60.1 |
MS.gene71584.t1 | MTR_4g133300 | 41.139 | 158 | 79 | 2 | 15 | 163 | 88 | 240 | 2.06e-29 | 109 |
MS.gene71584.t1 | MTR_4g133300 | 43.919 | 148 | 79 | 2 | 17 | 163 | 13 | 157 | 5.97e-26 | 100 |
MS.gene71584.t1 | MTR_4g133300 | 43.038 | 79 | 42 | 1 | 91 | 169 | 8 | 83 | 2.59e-11 | 61.2 |
MS.gene71584.t1 | MTR_6g008970 | 42.105 | 152 | 81 | 2 | 13 | 157 | 60 | 211 | 1.63e-28 | 112 |
MS.gene71584.t1 | MTR_6g008970 | 50.667 | 75 | 37 | 0 | 96 | 170 | 64 | 138 | 4.23e-17 | 79.0 |
MS.gene71584.t1 | MTR_4g133470 | 40.506 | 158 | 80 | 2 | 15 | 163 | 88 | 240 | 2.45e-28 | 106 |
MS.gene71584.t1 | MTR_4g133470 | 43.919 | 148 | 79 | 2 | 17 | 163 | 13 | 157 | 1.68e-25 | 99.4 |
MS.gene71584.t1 | MTR_4g133470 | 43.038 | 79 | 42 | 1 | 91 | 169 | 8 | 83 | 2.51e-11 | 61.2 |
MS.gene71584.t1 | MTR_3g006105 | 41.463 | 164 | 83 | 4 | 13 | 163 | 5 | 168 | 3.85e-27 | 102 |
MS.gene71584.t1 | MTR_3g006105 | 45.783 | 83 | 44 | 1 | 96 | 177 | 9 | 91 | 1.52e-12 | 63.5 |
MS.gene71584.t1 | MTR_6g008995 | 40.667 | 150 | 84 | 1 | 13 | 157 | 34 | 183 | 3.29e-26 | 104 |
MS.gene71584.t1 | MTR_1g109550 | 45.736 | 129 | 63 | 3 | 19 | 145 | 19 | 142 | 3.30e-26 | 98.2 |
MS.gene71584.t1 | MTR_1g109550 | 50.685 | 73 | 35 | 1 | 92 | 164 | 13 | 84 | 3.02e-17 | 75.1 |
MS.gene71584.t1 | MTR_7g013410 | 37.324 | 142 | 83 | 2 | 20 | 157 | 2 | 141 | 1.14e-22 | 89.0 |
MS.gene71584.t1 | MTR_7g013380 | 36.774 | 155 | 89 | 3 | 17 | 162 | 100 | 254 | 5.49e-21 | 88.2 |
MS.gene71584.t1 | MTR_7g013380 | 34.066 | 182 | 108 | 5 | 1 | 173 | 1 | 179 | 4.41e-20 | 85.9 |
MS.gene71584.t1 | MTR_1g105010 | 50.617 | 81 | 40 | 0 | 1 | 81 | 1 | 81 | 1.31e-20 | 83.2 |
MS.gene71584.t1 | MTR_1g105010 | 42.553 | 94 | 48 | 1 | 92 | 185 | 13 | 100 | 1.48e-17 | 75.1 |
MS.gene71584.t1 | MTR_7g089490 | 49.398 | 83 | 42 | 0 | 1 | 83 | 1 | 83 | 5.23e-20 | 81.6 |
MS.gene71584.t1 | MTR_1g104940 | 53.425 | 73 | 34 | 0 | 16 | 88 | 14 | 86 | 4.95e-19 | 79.0 |
MS.gene71584.t1 | MTR_1g104940 | 46.739 | 92 | 46 | 1 | 95 | 183 | 14 | 105 | 9.06e-18 | 75.9 |
MS.gene71584.t1 | MTR_6g008995 | 40.000 | 125 | 70 | 1 | 38 | 157 | 2 | 126 | 7.50e-19 | 83.6 |
MS.gene71584.t1 | MTR_8g062350 | 30.303 | 198 | 86 | 4 | 9 | 157 | 7 | 201 | 1.72e-16 | 74.3 |
MS.gene71584.t1 | MTR_8g062350 | 50.000 | 68 | 34 | 0 | 96 | 163 | 15 | 82 | 7.77e-12 | 62.0 |
MS.gene71584.t1 | MTR_1g104937 | 45.205 | 73 | 40 | 0 | 16 | 88 | 12 | 84 | 2.31e-14 | 66.6 |
MS.gene71584.t1 | MTR_1g104937 | 45.000 | 80 | 44 | 0 | 95 | 174 | 12 | 91 | 1.50e-12 | 62.0 |
MS.gene71584.t1 | MTR_1g093310 | 53.226 | 62 | 23 | 1 | 18 | 79 | 11 | 66 | 5.41e-14 | 64.7 |
MS.gene71584.t1 | MTR_1g091047 | 49.180 | 61 | 30 | 1 | 98 | 157 | 12 | 72 | 2.86e-13 | 62.8 |
MS.gene71584.t1 | MTR_1g091047 | 43.750 | 64 | 35 | 1 | 18 | 80 | 11 | 74 | 4.95e-11 | 56.6 |
MS.gene71584.t1 | MTR_2g097830 | 41.748 | 103 | 52 | 3 | 15 | 114 | 69 | 166 | 9.86e-13 | 63.5 |
MS.gene71584.t1 | MTR_2g097830 | 41.584 | 101 | 56 | 1 | 69 | 169 | 44 | 141 | 1.42e-12 | 63.2 |
MS.gene71584.t1 | MTR_3g006000 | 48.052 | 77 | 35 | 4 | 13 | 87 | 4 | 77 | 4.99e-12 | 59.7 |
MS.gene71584.t1 | MTR_3g006000 | 51.852 | 54 | 26 | 0 | 111 | 164 | 24 | 77 | 8.08e-12 | 58.9 |
MS.gene71584.t1 | MTR_1g106560 | 65.854 | 41 | 13 | 1 | 35 | 75 | 16 | 55 | 4.72e-11 | 56.2 |
MS.gene71584.t1 | MTR_3g006010 | 46.479 | 71 | 37 | 1 | 93 | 162 | 6 | 76 | 6.54e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71584.t1 | AT1G24190 | 43.226 | 155 | 75 | 4 | 13 | 157 | 11 | 162 | 3.14e-31 | 119 |
MS.gene71584.t1 | AT1G24190 | 55.882 | 68 | 30 | 0 | 96 | 163 | 15 | 82 | 8.42e-18 | 81.3 |
MS.gene71584.t1 | AT1G24190 | 43.226 | 155 | 75 | 4 | 13 | 157 | 11 | 162 | 3.80e-31 | 119 |
MS.gene71584.t1 | AT1G24190 | 55.882 | 68 | 30 | 0 | 96 | 163 | 15 | 82 | 9.26e-18 | 80.9 |
MS.gene71584.t1 | AT1G24190 | 43.226 | 155 | 75 | 4 | 13 | 157 | 11 | 162 | 3.87e-31 | 119 |
MS.gene71584.t1 | AT1G24190 | 55.882 | 68 | 30 | 0 | 96 | 163 | 15 | 82 | 9.00e-18 | 81.3 |
MS.gene71584.t1 | AT3G01320 | 43.046 | 151 | 80 | 2 | 13 | 157 | 54 | 204 | 9.43e-31 | 118 |
MS.gene71584.t1 | AT3G01320 | 55.405 | 74 | 33 | 0 | 96 | 169 | 58 | 131 | 2.21e-18 | 82.8 |
MS.gene71584.t1 | AT3G01320 | 43.046 | 151 | 80 | 2 | 13 | 157 | 54 | 204 | 9.44e-31 | 118 |
MS.gene71584.t1 | AT3G01320 | 55.405 | 74 | 33 | 0 | 96 | 169 | 58 | 131 | 2.34e-18 | 82.8 |
MS.gene71584.t1 | AT1G24230 | 35.119 | 168 | 94 | 3 | 13 | 179 | 11 | 164 | 5.26e-30 | 110 |
MS.gene71584.t1 | AT1G24230 | 26.846 | 149 | 99 | 3 | 13 | 154 | 83 | 228 | 7.53e-14 | 68.2 |
MS.gene71584.t1 | AT1G70060 | 41.615 | 161 | 82 | 2 | 7 | 157 | 5 | 163 | 1.01e-29 | 115 |
MS.gene71584.t1 | AT1G70060 | 54.545 | 77 | 35 | 0 | 96 | 172 | 15 | 91 | 2.80e-18 | 82.4 |
MS.gene71584.t1 | AT1G70060 | 41.615 | 161 | 82 | 2 | 7 | 157 | 5 | 163 | 1.01e-29 | 115 |
MS.gene71584.t1 | AT1G70060 | 54.545 | 77 | 35 | 0 | 96 | 172 | 15 | 91 | 2.80e-18 | 82.4 |
MS.gene71584.t1 | AT5G15020 | 41.447 | 152 | 80 | 2 | 13 | 157 | 49 | 198 | 1.46e-29 | 115 |
MS.gene71584.t1 | AT5G15020 | 53.521 | 71 | 33 | 0 | 96 | 166 | 53 | 123 | 3.69e-17 | 79.3 |
MS.gene71584.t1 | AT5G15020 | 41.447 | 152 | 80 | 2 | 13 | 157 | 49 | 198 | 1.51e-29 | 115 |
MS.gene71584.t1 | AT5G15020 | 53.521 | 71 | 33 | 0 | 96 | 166 | 53 | 123 | 3.72e-17 | 79.3 |
MS.gene71584.t1 | AT1G24200 | 34.225 | 187 | 114 | 3 | 12 | 189 | 10 | 196 | 8.44e-29 | 106 |
MS.gene71584.t1 | AT1G27260 | 37.179 | 156 | 83 | 2 | 14 | 156 | 1 | 154 | 2.40e-27 | 103 |
MS.gene71584.t1 | AT1G27260 | 37.349 | 83 | 49 | 1 | 4 | 83 | 78 | 160 | 4.57e-11 | 60.1 |
MS.gene71584.t1 | AT1G59890 | 41.722 | 151 | 73 | 3 | 17 | 157 | 46 | 191 | 1.10e-25 | 103 |
MS.gene71584.t1 | AT1G59890 | 50.000 | 74 | 37 | 0 | 96 | 169 | 46 | 119 | 3.18e-15 | 73.6 |
MS.gene71584.t1 | AT1G59890 | 41.722 | 151 | 73 | 3 | 17 | 157 | 46 | 191 | 1.13e-25 | 103 |
MS.gene71584.t1 | AT1G59890 | 50.000 | 74 | 37 | 0 | 96 | 169 | 46 | 119 | 3.12e-15 | 73.6 |
MS.gene71584.t1 | AT1G59890 | 41.722 | 151 | 73 | 3 | 17 | 157 | 46 | 191 | 1.15e-25 | 103 |
MS.gene71584.t1 | AT1G59890 | 50.000 | 74 | 37 | 0 | 96 | 169 | 46 | 119 | 3.18e-15 | 73.6 |
MS.gene71584.t1 | AT1G59890 | 41.722 | 151 | 73 | 3 | 17 | 157 | 46 | 191 | 1.17e-25 | 103 |
MS.gene71584.t1 | AT1G59890 | 50.000 | 74 | 37 | 0 | 96 | 169 | 46 | 119 | 3.12e-15 | 73.6 |
MS.gene71584.t1 | AT1G10450 | 39.264 | 163 | 83 | 3 | 7 | 157 | 21 | 179 | 1.54e-25 | 103 |
MS.gene71584.t1 | AT1G10450 | 48.529 | 68 | 35 | 0 | 96 | 163 | 34 | 101 | 1.35e-12 | 66.2 |
MS.gene71584.t1 | AT1G10450 | 39.264 | 163 | 83 | 3 | 7 | 157 | 21 | 179 | 1.54e-25 | 103 |
MS.gene71584.t1 | AT1G10450 | 48.529 | 68 | 35 | 0 | 96 | 163 | 34 | 101 | 1.35e-12 | 66.2 |
MS.gene71584.t1 | AT1G10450 | 39.264 | 163 | 83 | 3 | 7 | 157 | 72 | 230 | 1.75e-25 | 103 |
MS.gene71584.t1 | AT1G10450 | 48.529 | 68 | 35 | 0 | 96 | 163 | 85 | 152 | 1.24e-12 | 66.2 |
MS.gene71584.t1 | AT1G70030 | 36.424 | 151 | 89 | 2 | 13 | 157 | 8 | 157 | 9.71e-24 | 92.4 |
MS.gene71584.t1 | AT1G70030 | 44.118 | 68 | 38 | 0 | 99 | 166 | 15 | 82 | 4.20e-13 | 64.7 |
MS.gene71584.t1 | AT1G24250 | 30.366 | 191 | 104 | 3 | 1 | 164 | 1 | 189 | 1.66e-21 | 89.0 |
MS.gene71584.t1 | AT1G23810 | 32.759 | 174 | 101 | 3 | 7 | 164 | 5 | 178 | 3.35e-21 | 87.8 |
MS.gene71584.t1 | AT5G15025 | 57.353 | 68 | 29 | 0 | 13 | 80 | 44 | 111 | 5.63e-20 | 81.6 |
MS.gene71584.t1 | AT5G15025 | 42.857 | 77 | 44 | 0 | 94 | 170 | 46 | 122 | 3.57e-14 | 66.6 |
MS.gene71584.t1 | AT5G15040 | 53.623 | 69 | 32 | 0 | 14 | 82 | 1 | 69 | 1.11e-18 | 77.0 |
MS.gene71584.t1 | AT5G15040 | 43.590 | 78 | 44 | 0 | 93 | 170 | 1 | 78 | 4.67e-13 | 62.4 |
MS.gene71584.t1 | AT5G15040 | 53.623 | 69 | 32 | 0 | 14 | 82 | 1 | 69 | 1.11e-18 | 77.0 |
MS.gene71584.t1 | AT5G15040 | 43.590 | 78 | 44 | 0 | 93 | 170 | 1 | 78 | 4.67e-13 | 62.4 |
MS.gene71584.t1 | AT5G15040 | 53.623 | 69 | 32 | 0 | 14 | 82 | 1 | 69 | 1.11e-18 | 77.0 |
MS.gene71584.t1 | AT5G15040 | 43.590 | 78 | 44 | 0 | 93 | 170 | 1 | 78 | 4.67e-13 | 62.4 |
MS.gene71584.t1 | AT4G12020 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 2.91e-18 | 82.4 |
MS.gene71584.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 3.99e-15 | 73.6 |
MS.gene71584.t1 | AT4G12020 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 3.00e-18 | 82.4 |
MS.gene71584.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 4.15e-15 | 73.6 |
MS.gene71584.t1 | AT4G12020 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 3.16e-18 | 82.4 |
MS.gene71584.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 4.37e-15 | 73.2 |
MS.gene71584.t1 | AT4G12020 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 3.16e-18 | 82.4 |
MS.gene71584.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 4.37e-15 | 73.2 |
MS.gene71584.t1 | AT4G12020 | 59.701 | 67 | 26 | 1 | 13 | 79 | 238 | 303 | 3.17e-18 | 82.4 |
MS.gene71584.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 241 | 314 | 4.38e-15 | 73.2 |
MS.gene71584.t1 | AT4G12020 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 3.19e-18 | 82.4 |
MS.gene71584.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 4.41e-15 | 73.2 |
MS.gene71584.t1 | AT4G12020 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 3.33e-18 | 82.4 |
MS.gene71584.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 4.56e-15 | 73.2 |
MS.gene71584.t1 | AT4G12020 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 3.46e-18 | 82.4 |
MS.gene71584.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 4.69e-15 | 73.2 |
MS.gene71584.t1 | AT4G12020 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 4.25e-18 | 82.0 |
MS.gene71584.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 5.76e-15 | 73.2 |
MS.gene71584.t1 | AT4G12020 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 4.25e-18 | 82.0 |
MS.gene71584.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 5.76e-15 | 73.2 |
MS.gene71584.t1 | AT4G12020 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 5.71e-18 | 81.6 |
MS.gene71584.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 7.37e-15 | 72.8 |
MS.gene71584.t1 | AT1G70030 | 36.800 | 125 | 71 | 2 | 1 | 117 | 7 | 131 | 4.78e-17 | 74.3 |
MS.gene71584.t1 | AT1G70030 | 44.118 | 68 | 38 | 0 | 99 | 166 | 26 | 93 | 2.16e-13 | 64.7 |
MS.gene71584.t1 | AT1G27250 | 45.000 | 80 | 42 | 1 | 2 | 79 | 5 | 84 | 1.27e-16 | 73.2 |
MS.gene71584.t1 | AT1G27250 | 42.857 | 77 | 44 | 0 | 86 | 162 | 12 | 88 | 8.48e-13 | 63.2 |
MS.gene71584.t1 | AT1G70030 | 39.394 | 99 | 54 | 1 | 13 | 105 | 19 | 117 | 2.86e-16 | 72.0 |
MS.gene71584.t1 | AT1G70030 | 44.118 | 68 | 38 | 0 | 99 | 166 | 26 | 93 | 1.42e-13 | 65.1 |
MS.gene71584.t1 | AT1G27270 | 34.146 | 164 | 84 | 3 | 15 | 156 | 13 | 174 | 3.22e-15 | 71.6 |
MS.gene71584.t1 | AT1G27220 | 45.205 | 73 | 38 | 1 | 9 | 79 | 5 | 77 | 7.87e-15 | 69.7 |
MS.gene71584.t1 | AT1G27220 | 42.308 | 78 | 45 | 0 | 86 | 163 | 5 | 82 | 2.47e-13 | 65.9 |
MS.gene71584.t1 | AT1G27280 | 30.070 | 143 | 91 | 1 | 28 | 161 | 5 | 147 | 6.42e-14 | 68.2 |
MS.gene71584.t1 | AT1G27280 | 39.394 | 66 | 40 | 0 | 13 | 78 | 78 | 143 | 3.72e-11 | 60.5 |
MS.gene71584.t1 | AT1G27240 | 39.437 | 71 | 43 | 0 | 12 | 82 | 10 | 80 | 1.60e-12 | 63.5 |
MS.gene71584.t1 | AT5G35610 | 42.667 | 75 | 42 | 1 | 6 | 80 | 1 | 74 | 2.59e-11 | 59.7 |
MS.gene71584.t1 | AT1G24210 | 41.096 | 73 | 43 | 0 | 13 | 85 | 11 | 83 | 2.88e-11 | 59.7 |
Find 31 sgRNAs with CRISPR-Local
Find 34 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAATTTGTGAAAGCTATTA+AGG | 0.207434 | 1.4:+81783196 | MS.gene71584:CDS |
AGATTGAAGGATTTGTTTAA+AGG | 0.287517 | 1.4:+81783023 | MS.gene71584:CDS |
TAATCAAACTTGCTCCCTTT+TGG | 0.325065 | 1.4:-81783083 | None:intergenic |
AAAGGGAGCAAGTTTGATTA+TGG | 0.329129 | 1.4:+81783086 | MS.gene71584:CDS |
GTACTGATTTGATATTTCTT+TGG | 0.342104 | 1.4:-81783320 | None:intergenic |
AGAGTGAAGGAACTATTTAA+AGG | 0.356818 | 1.4:+81783260 | MS.gene71584:CDS |
GATTGAAGGATTTGTTTAAA+GGG | 0.359025 | 1.4:+81783024 | MS.gene71584:CDS |
AAATGTTATGATGGATTTCA+AGG | 0.397261 | 1.4:+81782968 | MS.gene71584:CDS |
GCTTCTTCCAACACTCCAAA+TGG | 0.411742 | 1.4:-81783116 | None:intergenic |
GGGCATACAAATTTAACGTT+GGG | 0.437947 | 1.4:+81783281 | MS.gene71584:CDS |
GATTATGGCATAGATCCATT+TGG | 0.439528 | 1.4:+81783101 | MS.gene71584:CDS |
TTCAACATCTTCGTGCCAAA+AGG | 0.444915 | 1.4:+81783068 | MS.gene71584:CDS |
GAGTGAAGGAACTATTTAAA+GGG | 0.467701 | 1.4:+81783261 | MS.gene71584:CDS |
CATAGATCCATTTGGAGTGT+TGG | 0.482305 | 1.4:+81783109 | MS.gene71584:CDS |
TATCAAATCAGTACTGATGA+TGG | 0.498943 | 1.4:+81783329 | MS.gene71584:CDS |
TCAACATCTTCGTGCCAAAA+GGG | 0.534332 | 1.4:+81783069 | MS.gene71584:CDS |
TCCATGAGACATGTTATCGC+TGG | 0.536428 | 1.4:-81782856 | None:intergenic |
TGGTGTCATAGCAAGATTGA+AGG | 0.543726 | 1.4:+81783010 | MS.gene71584:CDS |
AGGGCATACAAATTTAACGT+TGG | 0.547701 | 1.4:+81783280 | MS.gene71584:CDS |
TCCAGCGATAACATGTCTCA+TGG | 0.552003 | 1.4:+81782855 | MS.gene71584:CDS |
AGTTGAGTTTCAATATGAGA+GGG | 0.554210 | 1.4:+81783163 | MS.gene71584:CDS |
TGACGTAGAAGCAGAAGACA+TGG | 0.554579 | 1.4:+81783403 | MS.gene71584:CDS |
GCTATTGCTTCTTCCATCGT+GGG | 0.554911 | 1.4:-81782885 | None:intergenic |
GAAAGCTATTAAGGATTGCA+AGG | 0.560574 | 1.4:+81783205 | MS.gene71584:CDS |
TGCTATTGCTTCTTCCATCG+TGG | 0.562428 | 1.4:-81782886 | None:intergenic |
AAGTTGAGTTTCAATATGAG+AGG | 0.581901 | 1.4:+81783162 | MS.gene71584:CDS |
AGAAGCAGAAGACATGGAAG+TGG | 0.582532 | 1.4:+81783409 | MS.gene71584:CDS |
ATGTCTCGCGAAAAGAGTGA+AGG | 0.647795 | 1.4:+81783247 | MS.gene71584:CDS |
AGAAGCAATAGCATATGTCG+AGG | 0.681954 | 1.4:+81782896 | MS.gene71584:CDS |
TCATGGAGAAGTTCCCACGA+TGG | 0.689488 | 1.4:+81782872 | MS.gene71584:CDS |
GCTATGAGAATTGATACAAG+TGG | 0.693715 | 1.4:+81782990 | MS.gene71584:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGAATTTTTAAATGTTATGA+TGG | + | chr1.4:81782959-81782978 | MS.gene71584:CDS | 15.0% |
! | TGAATTTGTGAAAGCTATTA+AGG | + | chr1.4:81783196-81783215 | MS.gene71584:CDS | 25.0% |
!! | AGATTGAAGGATTTGTTTAA+AGG | + | chr1.4:81783023-81783042 | MS.gene71584:CDS | 25.0% |
!! | GATTGAAGGATTTGTTTAAA+GGG | + | chr1.4:81783024-81783043 | MS.gene71584:CDS | 25.0% |
!!! | AAATGTTATGATGGATTTCA+AGG | + | chr1.4:81782968-81782987 | MS.gene71584:CDS | 25.0% |
!!! | GTACTGATTTGATATTTCTT+TGG | - | chr1.4:81783323-81783342 | None:intergenic | 25.0% |
AAGTTGAGTTTCAATATGAG+AGG | + | chr1.4:81783162-81783181 | MS.gene71584:CDS | 30.0% | |
AGAGTGAAGGAACTATTTAA+AGG | + | chr1.4:81783260-81783279 | MS.gene71584:CDS | 30.0% | |
AGTTGAGTTTCAATATGAGA+GGG | + | chr1.4:81783163-81783182 | MS.gene71584:CDS | 30.0% | |
GAGTGAAGGAACTATTTAAA+GGG | + | chr1.4:81783261-81783280 | MS.gene71584:CDS | 30.0% | |
!! | GGGCACACAAATTTAATTTT+AGG | + | chr1.4:81783044-81783063 | MS.gene71584:CDS | 30.0% |
!! | TATCAAATCAGTACTGATGA+TGG | + | chr1.4:81783329-81783348 | MS.gene71584:CDS | 30.0% |
AAAGGGAGCAAGTTTGATTA+TGG | + | chr1.4:81783086-81783105 | MS.gene71584:CDS | 35.0% | |
AGGGCATACAAATTTAACGT+TGG | + | chr1.4:81783280-81783299 | MS.gene71584:CDS | 35.0% | |
GAAAGCTATTAAGGATTGCA+AGG | + | chr1.4:81783205-81783224 | MS.gene71584:CDS | 35.0% | |
GATTATGGCATAGATCCATT+TGG | + | chr1.4:81783101-81783120 | MS.gene71584:CDS | 35.0% | |
GCTATGAGAATTGATACAAG+TGG | + | chr1.4:81782990-81783009 | MS.gene71584:CDS | 35.0% | |
GGGCATACAAATTTAACGTT+GGG | + | chr1.4:81783281-81783300 | MS.gene71584:CDS | 35.0% | |
! | GAAACTCAACTTTTACTGCA+TGG | - | chr1.4:81783154-81783173 | None:intergenic | 35.0% |
!! | TAATCAAACTTGCTCCCTTT+TGG | - | chr1.4:81783086-81783105 | None:intergenic | 35.0% |
AGAAGCAATAGCATATGTCG+AGG | + | chr1.4:81782896-81782915 | MS.gene71584:CDS | 40.0% | |
TCAACATCTTCGTGCCAAAA+GGG | + | chr1.4:81783069-81783088 | MS.gene71584:CDS | 40.0% | |
TTCAACATCTTCGTGCCAAA+AGG | + | chr1.4:81783068-81783087 | MS.gene71584:CDS | 40.0% | |
! | CATAGATCCATTTGGAGTGT+TGG | + | chr1.4:81783109-81783128 | MS.gene71584:CDS | 40.0% |
!! | TGGTGTCATAGCAAGATTGA+AGG | + | chr1.4:81783010-81783029 | MS.gene71584:CDS | 40.0% |
AGAAGCAGAAGACATGGAAG+TGG | + | chr1.4:81783409-81783428 | MS.gene71584:CDS | 45.0% | |
ATGTCTCGCGAAAAGAGTGA+AGG | + | chr1.4:81783247-81783266 | MS.gene71584:CDS | 45.0% | |
GCTATTGCTTCTTCCATCGT+GGG | - | chr1.4:81782888-81782907 | None:intergenic | 45.0% | |
GCTTCTTCCAACACTCCAAA+TGG | - | chr1.4:81783119-81783138 | None:intergenic | 45.0% | |
TCCAGCGATAACATGTCTCA+TGG | + | chr1.4:81782855-81782874 | MS.gene71584:CDS | 45.0% | |
TCCATGAGACATGTTATCGC+TGG | - | chr1.4:81782859-81782878 | None:intergenic | 45.0% | |
TGACGTAGAAGCAGAAGACA+TGG | + | chr1.4:81783403-81783422 | MS.gene71584:CDS | 45.0% | |
TGCTATTGCTTCTTCCATCG+TGG | - | chr1.4:81782889-81782908 | None:intergenic | 45.0% | |
TCATGGAGAAGTTCCCACGA+TGG | + | chr1.4:81782872-81782891 | MS.gene71584:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 81782852 | 81783436 | 81782852 | ID=MS.gene71584 |
chr1.4 | mRNA | 81782852 | 81783436 | 81782852 | ID=MS.gene71584.t1;Parent=MS.gene71584 |
chr1.4 | exon | 81782852 | 81783436 | 81782852 | ID=MS.gene71584.t1.exon1;Parent=MS.gene71584.t1 |
chr1.4 | CDS | 81782852 | 81783436 | 81782852 | ID=cds.MS.gene71584.t1;Parent=MS.gene71584.t1 |
Gene Sequence |
Protein sequence |