Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71617.t1 | RHN82191.1 | 92.7 | 330 | 24 | 0 | 1 | 330 | 51 | 380 | 4.00E-135 | 491.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71617.t1 | Q7XHI9 | 60.1 | 138 | 45 | 2 | 190 | 324 | 193 | 323 | 1.5e-34 | 148.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71617.t1 | G7IE61 | 92.7 | 330 | 24 | 0 | 1 | 330 | 1 | 330 | 2.9e-135 | 491.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene71617.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71617.t1 | MTR_1g106460 | 94.848 | 330 | 17 | 0 | 1 | 330 | 1 | 330 | 0.0 | 647 |
| MS.gene71617.t1 | MTR_1g106460 | 93.841 | 276 | 17 | 0 | 1 | 276 | 1 | 276 | 0.0 | 531 |
| MS.gene71617.t1 | MTR_5g005110 | 49.702 | 336 | 125 | 9 | 9 | 329 | 9 | 315 | 8.27e-86 | 261 |
| MS.gene71617.t1 | MTR_1g106470 | 42.284 | 324 | 145 | 7 | 1 | 324 | 1 | 282 | 2.11e-60 | 195 |
| MS.gene71617.t1 | MTR_5g005110 | 43.310 | 284 | 117 | 9 | 9 | 277 | 9 | 263 | 3.56e-49 | 166 |
| MS.gene71617.t1 | MTR_3g103030 | 52.147 | 163 | 77 | 1 | 161 | 323 | 153 | 314 | 1.49e-47 | 163 |
| MS.gene71617.t1 | MTR_1g018090 | 51.235 | 162 | 69 | 2 | 152 | 313 | 198 | 349 | 4.20e-40 | 144 |
| MS.gene71617.t1 | MTR_1g106480 | 54.745 | 137 | 29 | 2 | 217 | 323 | 18 | 151 | 8.06e-38 | 132 |
| MS.gene71617.t1 | MTR_1g106470 | 34.767 | 279 | 140 | 7 | 1 | 279 | 1 | 237 | 7.98e-28 | 108 |
| MS.gene71617.t1 | MTR_5g079500 | 62.857 | 70 | 26 | 0 | 237 | 306 | 217 | 286 | 5.88e-24 | 100 |
| MS.gene71617.t1 | MTR_8g093500 | 53.623 | 69 | 32 | 0 | 234 | 302 | 110 | 178 | 3.76e-18 | 83.2 |
| MS.gene71617.t1 | MTR_4g131160 | 45.882 | 85 | 44 | 1 | 219 | 301 | 175 | 259 | 8.70e-17 | 80.9 |
| MS.gene71617.t1 | MTR_4g131160 | 45.882 | 85 | 44 | 1 | 219 | 301 | 178 | 262 | 9.09e-17 | 80.9 |
| MS.gene71617.t1 | MTR_3g101810 | 49.254 | 67 | 34 | 0 | 234 | 300 | 167 | 233 | 9.53e-17 | 79.3 |
| MS.gene71617.t1 | MTR_7g069590 | 58.182 | 55 | 23 | 0 | 245 | 299 | 33 | 87 | 2.39e-16 | 75.5 |
| MS.gene71617.t1 | MTR_1g018090 | 40.310 | 129 | 67 | 2 | 152 | 280 | 198 | 316 | 1.24e-15 | 76.6 |
| MS.gene71617.t1 | MTR_1g080890 | 47.059 | 68 | 36 | 0 | 234 | 301 | 189 | 256 | 4.78e-14 | 72.4 |
| MS.gene71617.t1 | MTR_1g019240 | 43.548 | 62 | 35 | 0 | 254 | 315 | 101 | 162 | 1.62e-12 | 67.0 |
| MS.gene71617.t1 | MTR_5g017040 | 42.105 | 76 | 44 | 0 | 254 | 329 | 121 | 196 | 2.72e-12 | 67.0 |
| MS.gene71617.t1 | MTR_1g084980 | 50.000 | 48 | 24 | 0 | 254 | 301 | 478 | 525 | 8.84e-12 | 66.6 |
| MS.gene71617.t1 | MTR_3g449770 | 36.264 | 91 | 46 | 3 | 224 | 307 | 288 | 373 | 3.18e-11 | 64.7 |
| MS.gene71617.t1 | MTR_1g069155 | 37.349 | 83 | 45 | 1 | 226 | 301 | 298 | 380 | 5.88e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71617.t1 | AT2G14760 | 37.216 | 352 | 150 | 12 | 10 | 324 | 6 | 323 | 3.74e-57 | 188 |
| MS.gene71617.t1 | AT2G14760 | 35.890 | 365 | 150 | 13 | 10 | 324 | 6 | 336 | 2.35e-53 | 179 |
| MS.gene71617.t1 | AT4G33880 | 77.174 | 92 | 21 | 0 | 229 | 320 | 257 | 348 | 1.89e-45 | 158 |
| MS.gene71617.t1 | AT5G43175 | 54.140 | 157 | 57 | 2 | 184 | 325 | 63 | 219 | 6.54e-45 | 153 |
| MS.gene71617.t1 | AT1G27740 | 53.642 | 151 | 52 | 3 | 176 | 325 | 121 | 254 | 9.35e-45 | 154 |
| MS.gene71617.t1 | AT5G37800 | 61.039 | 77 | 27 | 1 | 230 | 306 | 196 | 269 | 1.09e-24 | 102 |
| MS.gene71617.t1 | AT1G66470 | 54.839 | 93 | 41 | 1 | 214 | 306 | 172 | 263 | 1.28e-24 | 101 |
| MS.gene71617.t1 | AT4G30980 | 45.783 | 83 | 45 | 0 | 219 | 301 | 111 | 193 | 1.60e-17 | 82.0 |
| MS.gene71617.t1 | AT4G30980 | 45.783 | 83 | 45 | 0 | 219 | 301 | 159 | 241 | 1.81e-17 | 82.4 |
| MS.gene71617.t1 | AT2G24260 | 53.846 | 65 | 30 | 0 | 237 | 301 | 34 | 98 | 3.33e-17 | 80.1 |
| MS.gene71617.t1 | AT2G24260 | 53.846 | 65 | 30 | 0 | 237 | 301 | 137 | 201 | 8.21e-17 | 80.5 |
| MS.gene71617.t1 | AT5G01305 | 48.649 | 74 | 33 | 1 | 237 | 305 | 36 | 109 | 2.10e-16 | 76.3 |
| MS.gene71617.t1 | AT3G21330 | 39.394 | 99 | 59 | 1 | 202 | 300 | 234 | 331 | 2.46e-16 | 79.3 |
| MS.gene71617.t1 | AT5G58010 | 47.143 | 70 | 37 | 0 | 232 | 301 | 93 | 162 | 8.16e-16 | 77.0 |
| MS.gene71617.t1 | AT4G00120 | 51.852 | 54 | 26 | 0 | 247 | 300 | 121 | 174 | 2.70e-15 | 73.9 |
| MS.gene71617.t1 | AT2G20180 | 40.244 | 82 | 38 | 2 | 254 | 326 | 223 | 302 | 4.20e-12 | 67.0 |
| MS.gene71617.t1 | AT2G20180 | 40.244 | 82 | 38 | 2 | 254 | 326 | 223 | 302 | 4.20e-12 | 67.0 |
| MS.gene71617.t1 | AT2G20180 | 40.244 | 82 | 38 | 2 | 254 | 326 | 223 | 302 | 4.20e-12 | 67.0 |
| MS.gene71617.t1 | AT4G36930 | 43.077 | 65 | 37 | 0 | 254 | 318 | 207 | 271 | 4.98e-12 | 66.6 |
| MS.gene71617.t1 | AT1G09530 | 39.394 | 66 | 40 | 0 | 254 | 319 | 353 | 418 | 7.45e-12 | 66.6 |
| MS.gene71617.t1 | AT1G09530 | 39.394 | 66 | 40 | 0 | 254 | 319 | 353 | 418 | 7.45e-12 | 66.6 |
| MS.gene71617.t1 | AT1G09530 | 39.394 | 66 | 40 | 0 | 254 | 319 | 353 | 418 | 7.45e-12 | 66.6 |
| MS.gene71617.t1 | AT1G09530 | 39.394 | 66 | 40 | 0 | 254 | 319 | 353 | 418 | 7.45e-12 | 66.6 |
| MS.gene71617.t1 | AT1G09530 | 39.394 | 66 | 40 | 0 | 254 | 319 | 353 | 418 | 7.45e-12 | 66.6 |
| MS.gene71617.t1 | AT1G09530 | 39.394 | 66 | 40 | 0 | 254 | 319 | 353 | 418 | 7.45e-12 | 66.6 |
| MS.gene71617.t1 | AT2G20180 | 40.244 | 82 | 38 | 2 | 254 | 326 | 294 | 373 | 7.85e-12 | 66.2 |
| MS.gene71617.t1 | AT2G20180 | 40.244 | 82 | 38 | 2 | 254 | 326 | 294 | 373 | 7.85e-12 | 66.2 |
| MS.gene71617.t1 | AT2G20180 | 40.244 | 82 | 38 | 2 | 254 | 326 | 294 | 373 | 7.85e-12 | 66.2 |
| MS.gene71617.t1 | AT2G20180 | 40.244 | 82 | 38 | 2 | 254 | 326 | 294 | 373 | 7.85e-12 | 66.2 |
| MS.gene71617.t1 | AT5G67110 | 42.857 | 77 | 28 | 3 | 254 | 330 | 103 | 163 | 7.42e-11 | 61.6 |
| MS.gene71617.t1 | AT2G46970 | 31.034 | 87 | 53 | 2 | 251 | 330 | 205 | 291 | 9.60e-11 | 62.8 |
| MS.gene71617.t1 | AT2G46970 | 31.034 | 87 | 53 | 2 | 251 | 330 | 236 | 322 | 9.87e-11 | 62.8 |
Find 54 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAACAGATTTGAAGTTAA+AGG | 0.203807 | 1.4:-82251457 | MS.gene71617:CDS |
| TCAAATCTGTTGAATCATTC+TGG | 0.235168 | 1.4:+82251466 | None:intergenic |
| CATTAGGGACTAGGCTTTGT+AGG | 0.283545 | 1.4:+82251209 | None:intergenic |
| CTTGGAAGTTATTAAGTAAC+TGG | 0.304266 | 1.4:+82252333 | None:intergenic |
| TTCATTCCATTGTAAGCAAT+TGG | 0.326950 | 1.4:+82250856 | None:intergenic |
| CAAGTTTCTGAGCACCATTA+TGG | 0.327811 | 1.4:-82252314 | MS.gene71617:CDS |
| TCAACAGATTTGAAGTTAAA+GGG | 0.332099 | 1.4:-82251456 | MS.gene71617:CDS |
| CTAAATTGAAATTTCCATAA+TGG | 0.336286 | 1.4:+82252300 | None:intergenic |
| GAAAACACTTCTGAAGAGTT+TGG | 0.345438 | 1.4:-82252014 | MS.gene71617:CDS |
| CCTTGGTTCCATTAGGGACT+AGG | 0.345834 | 1.4:+82251200 | None:intergenic |
| CATAATGGTGCTCAGAAACT+TGG | 0.346093 | 1.4:+82252315 | None:intergenic |
| CAAGGAAAGAAAATGGATTC+TGG | 0.368940 | 1.4:-82252425 | None:intergenic |
| AAAGCTACCTTGGTTCCATT+AGG | 0.376583 | 1.4:+82251193 | None:intergenic |
| GGATGAAAGTCATGATCTTC+AGG | 0.377305 | 1.4:-82251565 | MS.gene71617:CDS |
| ACAAGAGAAATGTGAAATCT+AGG | 0.391427 | 1.4:-82251626 | MS.gene71617:CDS |
| AAGCTACCTTGGTTCCATTA+GGG | 0.399329 | 1.4:+82251194 | None:intergenic |
| GTTAGCACTTATAGTGTTCA+AGG | 0.403437 | 1.4:-82252059 | MS.gene71617:CDS |
| CTACAAAGCCTAGTCCCTAA+TGG | 0.408904 | 1.4:-82251208 | MS.gene71617:CDS |
| GCTATATATCTATGGTAGTT+CGG | 0.420297 | 1.4:+82250804 | None:intergenic |
| TATATTGCTAGTATCAGAAA+TGG | 0.424213 | 1.4:+82252154 | None:intergenic |
| AGAGTTTGGTCAAGATGTTT+CGG | 0.440700 | 1.4:-82252000 | MS.gene71617:CDS |
| GAAGAATGGAGTTCTCTTAG+TGG | 0.449677 | 1.4:-82252389 | MS.gene71617:CDS |
| TATATCTATGGTAGTTCGGT+TGG | 0.463306 | 1.4:+82250808 | None:intergenic |
| ACTATTGTGGATTCATGTCC+TGG | 0.472252 | 1.4:+82252257 | None:intergenic |
| TAGAAATTCCATCTACATCA+TGG | 0.473913 | 1.4:-82252280 | MS.gene71617:CDS |
| TGTCCTGGCCATGATGTAGA+TGG | 0.481256 | 1.4:+82252272 | None:intergenic |
| GGCATTCATGTAGCTAATGT+TGG | 0.483860 | 1.4:+82252085 | None:intergenic |
| AAGGGAAAATCAAAATGTAA+TGG | 0.488727 | 1.4:-82251438 | MS.gene71617:CDS |
| GCTATTCATGCTGACTATTG+TGG | 0.502781 | 1.4:+82252244 | None:intergenic |
| ATATCTATGGTAGTTCGGTT+GGG | 0.502830 | 1.4:+82250809 | None:intergenic |
| GCTTACAATGGAATGAACAT+TGG | 0.525606 | 1.4:-82250850 | MS.gene71617:CDS |
| GCTTTAAAGAAGCTAAATGT+AGG | 0.527965 | 1.4:-82251507 | MS.gene71617:CDS |
| GTGAGCAAAGTTGTGAAGAA+TGG | 0.531367 | 1.4:-82252403 | MS.gene71617:CDS |
| TTCTGAGCTCTGATGATCAC+TGG | 0.538373 | 1.4:-82250888 | MS.gene71617:CDS |
| GTTCGGTTGGGATAATGTTG+AGG | 0.541601 | 1.4:+82250821 | None:intergenic |
| AAGATCTAGGAGCTCAATGA+AGG | 0.546306 | 1.4:-82251931 | MS.gene71617:intron |
| TGTTTCGGAATCCGCAAAAG+AGG | 0.548289 | 1.4:-82251985 | MS.gene71617:CDS |
| GAAGAGAAAGAATAAATGAA+AGG | 0.551355 | 1.4:-82251240 | MS.gene71617:CDS |
| ATTCCATCTACATCATGGCC+AGG | 0.561187 | 1.4:-82252275 | MS.gene71617:CDS |
| GTTCAAAAGCAACGCTGACG+AGG | 0.565933 | 1.4:-82251586 | MS.gene71617:CDS |
| TCAGGAGCAGAATTTGAGCT+CGG | 0.588142 | 1.4:-82251547 | MS.gene71617:CDS |
| AATATATTTCATAATACAAG+TGG | 0.588869 | 1.4:-82252137 | MS.gene71617:CDS |
| GGATATCAGCACCATGCTTG+AGG | 0.592275 | 1.4:-82251090 | MS.gene71617:CDS |
| TATGCTCCAATTGCTTACAA+TGG | 0.606083 | 1.4:-82250862 | MS.gene71617:CDS |
| GGAAAATCAAAATGTAATGG+AGG | 0.608687 | 1.4:-82251435 | MS.gene71617:CDS |
| TTGCACAGCTTCCTCAAGCA+TGG | 0.610000 | 1.4:+82251079 | None:intergenic |
| ATAGACACCTTGTGGATCAG+AGG | 0.616647 | 1.4:+82251407 | None:intergenic |
| ATCTAGGAAGAAACCAAAGT+CGG | 0.617908 | 1.4:-82251610 | MS.gene71617:CDS |
| GTTTCGGAATCCGCAAAAGA+GGG | 0.625031 | 1.4:-82251984 | MS.gene71617:CDS |
| AGAGGGTATCAAGAACAACC+TGG | 0.629194 | 1.4:-82251967 | MS.gene71617:CDS |
| AACACTATAAGTGCTAACAT+TGG | 0.631216 | 1.4:+82252064 | None:intergenic |
| CCTAGTCCCTAATGGAACCA+AGG | 0.646129 | 1.4:-82251200 | MS.gene71617:intron |
| GGTTCTGCCTCTGATCCACA+AGG | 0.648330 | 1.4:-82251414 | MS.gene71617:CDS |
| GGAGCAGAATTTGAGCTCGG+AGG | 0.653936 | 1.4:-82251544 | MS.gene71617:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTCAAGAATATATAATA+TGG | + | chr1.4:82252271-82252290 | None:intergenic | 10.0% |
| !! | AATATATTTCATAATACAAG+TGG | - | chr1.4:82251089-82251108 | MS.gene71617:CDS | 15.0% |
| !!! | TATGAATCCAAATTTTAATT+CGG | - | chr1.4:82252232-82252251 | MS.gene71617:CDS | 15.0% |
| !!! | TTCAAATACTTTAAGATAAT+TGG | - | chr1.4:82252067-82252086 | MS.gene71617:CDS | 15.0% |
| !! | AACAAATAGAAACATGTATT+TGG | + | chr1.4:82251412-82251431 | None:intergenic | 20.0% |
| !! | CTAAATTGAAATTTCCATAA+TGG | + | chr1.4:82250929-82250948 | None:intergenic | 20.0% |
| !! | TAAAATTTGGATTCATAGTA+AGG | + | chr1.4:82252229-82252248 | None:intergenic | 20.0% |
| !!! | TATTTGTTTACATTTAAGAC+CGG | - | chr1.4:82251424-82251443 | MS.gene71617:CDS | 20.0% |
| !!! | TTTTCTTACTCATGAATTAT+AGG | - | chr1.4:82252112-82252131 | MS.gene71617:CDS | 20.0% |
| !!! | TTTTGATTTAATGATTCCAT+AGG | - | chr1.4:82251568-82251587 | MS.gene71617:CDS | 20.0% |
| ! | AAAAATCAGGAAAAAGATCT+AGG | - | chr1.4:82251282-82251301 | MS.gene71617:intron | 25.0% |
| ! | AAGGGAAAATCAAAATGTAA+TGG | - | chr1.4:82251788-82251807 | MS.gene71617:intron | 25.0% |
| ! | CAAATTAAGGTAAAAACATG+AGG | - | chr1.4:82252191-82252210 | MS.gene71617:CDS | 25.0% |
| ! | GAAGAGAAAGAATAAATGAA+AGG | - | chr1.4:82251986-82252005 | MS.gene71617:CDS | 25.0% |
| ! | GGTATTATGTATAAGCAAAA+AGG | - | chr1.4:82251362-82251381 | MS.gene71617:intron | 25.0% |
| ! | TATATTGCTAGTATCAGAAA+TGG | + | chr1.4:82251075-82251094 | None:intergenic | 25.0% |
| !! | CTGTGATTTTGAACTATTAA+AGG | - | chr1.4:82251922-82251941 | MS.gene71617:intron | 25.0% |
| !! | TCAACAGATTTGAAGTTAAA+GGG | - | chr1.4:82251770-82251789 | MS.gene71617:intron | 25.0% |
| !! | TTATTAGCAATGGTATTTTG+AGG | + | chr1.4:82251872-82251891 | None:intergenic | 25.0% |
| !! | TTCAACAGATTTGAAGTTAA+AGG | - | chr1.4:82251769-82251788 | MS.gene71617:intron | 25.0% |
| !! | TTTTGCACCGAATTAAAATT+TGG | + | chr1.4:82252242-82252261 | None:intergenic | 25.0% |
| !!! | CTCATGTTTTTACCTTAATT+TGG | + | chr1.4:82252193-82252212 | None:intergenic | 25.0% |
| !!! | TCAATGTGTTTAATTTTGTC+TGG | - | chr1.4:82251525-82251544 | MS.gene71617:CDS | 25.0% |
| AACACTATAAGTGCTAACAT+TGG | + | chr1.4:82251165-82251184 | None:intergenic | 30.0% | |
| ACAAGAGAAATGTGAAATCT+AGG | - | chr1.4:82251600-82251619 | MS.gene71617:CDS | 30.0% | |
| AGTTCAAAATCACAGTACTT+TGG | + | chr1.4:82251917-82251936 | None:intergenic | 30.0% | |
| CTTGGAAGTTATTAAGTAAC+TGG | + | chr1.4:82250896-82250915 | None:intergenic | 30.0% | |
| GGAAAATCAAAATGTAATGG+AGG | - | chr1.4:82251791-82251810 | MS.gene71617:intron | 30.0% | |
| GGACGTAAAATTATTAGCAA+TGG | + | chr1.4:82251882-82251901 | None:intergenic | 30.0% | |
| GTACTTTGGACAAAAATTCA+AGG | + | chr1.4:82251903-82251922 | None:intergenic | 30.0% | |
| TAGAAATTCCATCTACATCA+TGG | - | chr1.4:82250946-82250965 | MS.gene71617:intron | 30.0% | |
| TCAAATCTGTTGAATCATTC+TGG | + | chr1.4:82251763-82251782 | None:intergenic | 30.0% | |
| TCTTACTCATGAATTATAGG+TGG | - | chr1.4:82252115-82252134 | MS.gene71617:CDS | 30.0% | |
| TGCTTATACATAATACCAGA+GGG | + | chr1.4:82251359-82251378 | None:intergenic | 30.0% | |
| TTCATTCCATTGTAAGCAAT+TGG | + | chr1.4:82252373-82252392 | None:intergenic | 30.0% | |
| TTGCTTATACATAATACCAG+AGG | + | chr1.4:82251360-82251379 | None:intergenic | 30.0% | |
| ! | AAGTGTTTTCAGTTATCTGT+TGG | + | chr1.4:82251202-82251221 | None:intergenic | 30.0% |
| ! | AGTGTTTTCAGTTATCTGTT+GGG | + | chr1.4:82251201-82251220 | None:intergenic | 30.0% |
| ! | ATCTTTTTCCTGATTTTTCC+AGG | + | chr1.4:82251280-82251299 | None:intergenic | 30.0% |
| ! | GCAATATGTGAAGTTTTTAC+AGG | - | chr1.4:82252166-82252185 | MS.gene71617:CDS | 30.0% |
| ! | GTTTTTACAGGTCCAAATTA+AGG | - | chr1.4:82252178-82252197 | MS.gene71617:CDS | 30.0% |
| !! | GCTTTAAAGAAGCTAAATGT+AGG | - | chr1.4:82251719-82251738 | MS.gene71617:intron | 30.0% |
| !! | GTATTTTGAGGAAATGCAAT+TGG | + | chr1.4:82251860-82251879 | None:intergenic | 30.0% |
| AAGAACAACCTGGAAAAATC+AGG | - | chr1.4:82251269-82251288 | MS.gene71617:intron | 35.0% | |
| ACCAGGACTATAAAAAAAGC+AGG | + | chr1.4:82251466-82251485 | None:intergenic | 35.0% | |
| AGAGTTTGGTCAAGATGTTT+CGG | - | chr1.4:82251226-82251245 | MS.gene71617:CDS | 35.0% | |
| ATCTAGGAAGAAACCAAAGT+CGG | - | chr1.4:82251616-82251635 | MS.gene71617:CDS | 35.0% | |
| GCTTACAATGGAATGAACAT+TGG | - | chr1.4:82252376-82252395 | MS.gene71617:CDS | 35.0% | |
| GTGATATTGTGACAAGCATT+TGG | - | chr1.4:82251484-82251503 | MS.gene71617:CDS | 35.0% | |
| GTTAGCACTTATAGTGTTCA+AGG | - | chr1.4:82251167-82251186 | MS.gene71617:intron | 35.0% | |
| TATGCTCCAATTGCTTACAA+TGG | - | chr1.4:82252364-82252383 | MS.gene71617:CDS | 35.0% | |
| TCTTTGTAAATTACTCCCTC+TGG | - | chr1.4:82251341-82251360 | MS.gene71617:intron | 35.0% | |
| ! | CTCTTGTTCTTTTGTACCTA+TGG | + | chr1.4:82251587-82251606 | None:intergenic | 35.0% |
| ! | GAAAACACTTCTGAAGAGTT+TGG | - | chr1.4:82251212-82251231 | MS.gene71617:CDS | 35.0% |
| ! | TGTTTACATTTAAGACCGGA+GGG | - | chr1.4:82251428-82251447 | MS.gene71617:CDS | 35.0% |
| ! | TTGTTTACATTTAAGACCGG+AGG | - | chr1.4:82251427-82251446 | MS.gene71617:CDS | 35.0% |
| !!! | TCCTGCTTTTTTTATAGTCC+TGG | - | chr1.4:82251462-82251481 | MS.gene71617:CDS | 35.0% |
| AAAACATGAGGATCCTCCTT+AGG | - | chr1.4:82252203-82252222 | MS.gene71617:CDS | 40.0% | |
| AAAGCTACCTTGGTTCCATT+AGG | + | chr1.4:82252036-82252055 | None:intergenic | 40.0% | |
| AAGATCTAGGAGCTCAATGA+AGG | - | chr1.4:82251295-82251314 | MS.gene71617:intron | 40.0% | |
| AAGCTACCTTGGTTCCATTA+GGG | + | chr1.4:82252035-82252054 | None:intergenic | 40.0% | |
| ACTATTGTGGATTCATGTCC+TGG | + | chr1.4:82250972-82250991 | None:intergenic | 40.0% | |
| ATGCTTGTCACAATATCACC+AGG | + | chr1.4:82251483-82251502 | None:intergenic | 40.0% | |
| ATTCATAGTAAGGCCTAAGG+AGG | + | chr1.4:82252219-82252238 | None:intergenic | 40.0% | |
| CAAGTTTCTGAGCACCATTA+TGG | - | chr1.4:82250912-82250931 | MS.gene71617:intron | 40.0% | |
| CATAATGGTGCTCAGAAACT+TGG | + | chr1.4:82250914-82250933 | None:intergenic | 40.0% | |
| GAAGAATGGAGTTCTCTTAG+TGG | - | chr1.4:82250837-82250856 | MS.gene71617:CDS | 40.0% | |
| GGATGAAAGTCATGATCTTC+AGG | - | chr1.4:82251661-82251680 | MS.gene71617:intron | 40.0% | |
| GGCATTCATGTAGCTAATGT+TGG | + | chr1.4:82251144-82251163 | None:intergenic | 40.0% | |
| GTGAGCAAAGTTGTGAAGAA+TGG | - | chr1.4:82250823-82250842 | MS.gene71617:CDS | 40.0% | |
| TGGATTCATAGTAAGGCCTA+AGG | + | chr1.4:82252222-82252241 | None:intergenic | 40.0% | |
| TGTCATTGAGAAAGCTACCT+TGG | + | chr1.4:82252046-82252065 | None:intergenic | 40.0% | |
| ! | ACTTTTGCATAGACACCTTG+TGG | + | chr1.4:82251830-82251849 | None:intergenic | 40.0% |
| ! | GCTATTCATGCTGACTATTG+TGG | + | chr1.4:82250985-82251004 | None:intergenic | 40.0% |
| ! | GTTCTTGATACCCTCTTTTG+CGG | + | chr1.4:82251255-82251274 | None:intergenic | 40.0% |
| !! | AGCTGAGGAAGCTGATTTTA+TGG | - | chr1.4:82250869-82250888 | MS.gene71617:CDS | 40.0% |
| !! | GCTGAGGAAGCTGATTTTAT+GGG | - | chr1.4:82250870-82250889 | MS.gene71617:CDS | 40.0% |
| !! | TTGCTTTTGAACTCCGACTT+TGG | + | chr1.4:82251632-82251651 | None:intergenic | 40.0% |
| !!! | TAGTGGATTTTACACAGCTG+AGG | - | chr1.4:82250854-82250873 | MS.gene71617:CDS | 40.0% |
| ATAGACACCTTGTGGATCAG+AGG | + | chr1.4:82251822-82251841 | None:intergenic | 45.0% | |
| ATTCCATCTACATCATGGCC+AGG | - | chr1.4:82250951-82250970 | MS.gene71617:intron | 45.0% | |
| CTACAAAGCCTAGTCCCTAA+TGG | - | chr1.4:82252018-82252037 | MS.gene71617:CDS | 45.0% | |
| GTTCGGTTGGGATAATGTTG+AGG | + | chr1.4:82252408-82252427 | None:intergenic | 45.0% | |
| GTTTCGGAATCCGCAAAAGA+GGG | - | chr1.4:82251242-82251261 | MS.gene71617:CDS | 45.0% | |
| TCAGGAGCAGAATTTGAGCT+CGG | - | chr1.4:82251679-82251698 | MS.gene71617:intron | 45.0% | |
| TCTAGGAGCTCAATGAAGGT+AGG | - | chr1.4:82251299-82251318 | MS.gene71617:intron | 45.0% | |
| TGTTTCGGAATCCGCAAAAG+AGG | - | chr1.4:82251241-82251260 | MS.gene71617:CDS | 45.0% | |
| ! | AAGCAAAAAGGTGCGTGTGT+TGG | - | chr1.4:82251374-82251393 | MS.gene71617:intron | 45.0% |
| ! | CATTAGGGACTAGGCTTTGT+AGG | + | chr1.4:82252020-82252039 | None:intergenic | 45.0% |
| ! | TTCTGAGCTCTGATGATCAC+TGG | - | chr1.4:82252338-82252357 | MS.gene71617:CDS | 45.0% |
| !! | AGAGGGTATCAAGAACAACC+TGG | - | chr1.4:82251259-82251278 | MS.gene71617:intron | 45.0% |
| AGGAAGTGACTTACTCCCTC+CGG | + | chr1.4:82251446-82251465 | None:intergenic | 50.0% | |
| CCTAGTCCCTAATGGAACCA+AGG | - | chr1.4:82252026-82252045 | MS.gene71617:CDS | 50.0% | |
| CCTTGGTTCCATTAGGGACT+AGG | + | chr1.4:82252029-82252048 | None:intergenic | 50.0% | |
| GGATATCAGCACCATGCTTG+AGG | - | chr1.4:82252136-82252155 | MS.gene71617:CDS | 50.0% | |
| GTTCAAAAGCAACGCTGACG+AGG | - | chr1.4:82251640-82251659 | MS.gene71617:intron | 50.0% | |
| TGTCCTGGCCATGATGTAGA+TGG | + | chr1.4:82250957-82250976 | None:intergenic | 50.0% | |
| TTGCACAGCTTCCTCAAGCA+TGG | + | chr1.4:82252150-82252169 | None:intergenic | 50.0% | |
| GGAGCAGAATTTGAGCTCGG+AGG | - | chr1.4:82251682-82251701 | MS.gene71617:intron | 55.0% | |
| GGTTCTGCCTCTGATCCACA+AGG | - | chr1.4:82251812-82251831 | MS.gene71617:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 82250813 | 82252435 | 82250813 | ID=MS.gene71617 |
| chr1.4 | mRNA | 82250813 | 82252435 | 82250813 | ID=MS.gene71617.t1;Parent=MS.gene71617 |
| chr1.4 | exon | 82251932 | 82252435 | 82251932 | ID=MS.gene71617.t1.exon1;Parent=MS.gene71617.t1 |
| chr1.4 | CDS | 82251932 | 82252435 | 82251932 | ID=cds.MS.gene71617.t1;Parent=MS.gene71617.t1 |
| chr1.4 | exon | 82251401 | 82251658 | 82251401 | ID=MS.gene71617.t1.exon2;Parent=MS.gene71617.t1 |
| chr1.4 | CDS | 82251401 | 82251658 | 82251401 | ID=cds.MS.gene71617.t1;Parent=MS.gene71617.t1 |
| chr1.4 | exon | 82251201 | 82251266 | 82251201 | ID=MS.gene71617.t1.exon3;Parent=MS.gene71617.t1 |
| chr1.4 | CDS | 82251201 | 82251266 | 82251201 | ID=cds.MS.gene71617.t1;Parent=MS.gene71617.t1 |
| chr1.4 | exon | 82251049 | 82251114 | 82251049 | ID=MS.gene71617.t1.exon4;Parent=MS.gene71617.t1 |
| chr1.4 | CDS | 82251049 | 82251114 | 82251049 | ID=cds.MS.gene71617.t1;Parent=MS.gene71617.t1 |
| chr1.4 | exon | 82250813 | 82250911 | 82250813 | ID=MS.gene71617.t1.exon5;Parent=MS.gene71617.t1 |
| chr1.4 | CDS | 82250813 | 82250911 | 82250813 | ID=cds.MS.gene71617.t1;Parent=MS.gene71617.t1 |
| Gene Sequence |
| Protein sequence |
