AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71618

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71618.t1 MTR_1g106470 86.120 317 13 3 1 316 1 287 0.0 524
MS.gene71618.t1 MTR_1g106470 83.146 267 14 3 1 266 1 237 6.60e-149 418
MS.gene71618.t1 MTR_5g005110 47.289 332 134 10 1 312 1 311 2.12e-80 247
MS.gene71618.t1 MTR_1g106460 44.048 336 151 8 1 311 1 324 3.49e-66 211
MS.gene71618.t1 MTR_1g106480 66.061 165 18 3 182 316 1 157 4.31e-63 197
MS.gene71618.t1 MTR_5g005110 40.909 286 124 10 1 264 1 263 3.78e-46 157
MS.gene71618.t1 MTR_3g103030 50.286 175 72 4 147 309 142 313 1.76e-45 157
MS.gene71618.t1 MTR_1g018090 83.117 77 13 0 224 300 273 349 1.12e-38 140
MS.gene71618.t1 MTR_1g106490 61.607 112 29 3 46 150 23 127 8.52e-35 123
MS.gene71618.t1 MTR_1g106460 36.806 288 145 8 1 263 1 276 1.34e-31 119
MS.gene71618.t1 MTR_5g079500 50.538 93 41 2 203 293 197 286 1.20e-24 101
MS.gene71618.t1 MTR_8g093500 48.148 81 42 0 209 289 98 178 2.73e-18 83.6
MS.gene71618.t1 MTR_3g101810 46.914 81 43 0 234 314 180 260 2.71e-17 80.5
MS.gene71618.t1 MTR_4g131160 56.061 66 29 0 223 288 194 259 1.90e-16 79.7
MS.gene71618.t1 MTR_4g131160 56.061 66 29 0 223 288 197 262 2.06e-16 79.7
MS.gene71618.t1 MTR_7g069590 56.364 55 24 0 232 286 33 87 1.66e-15 73.2
MS.gene71618.t1 MTR_1g080890 51.389 72 35 0 217 288 185 256 1.26e-14 73.9
MS.gene71618.t1 MTR_1g018090 75.000 44 11 0 224 267 273 316 2.39e-14 72.8
MS.gene71618.t1 MTR_1g084980 46.970 66 30 1 223 288 465 525 7.57e-14 72.4
MS.gene71618.t1 MTR_1g019240 37.500 80 45 1 223 302 88 162 2.00e-13 69.7
MS.gene71618.t1 MTR_1g069155 41.333 75 39 1 214 288 311 380 1.15e-12 68.9
MS.gene71618.t1 MTR_3g449770 42.466 73 32 2 222 294 311 373 1.32e-12 68.6
MS.gene71618.t1 MTR_5g017040 38.235 68 42 0 234 301 114 181 7.45e-12 65.9
MS.gene71618.t1 MTR_7g099540 42.424 66 33 1 223 288 255 315 3.07e-11 64.3
MS.gene71618.t1 MTR_7g053410 46.053 76 40 1 214 288 306 381 3.67e-11 64.3
MS.gene71618.t1 MTR_7g053410 46.053 76 40 1 214 288 306 381 3.85e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71618.t1 AT2G14760 39.818 329 168 9 10 315 6 327 1.13e-52 176
MS.gene71618.t1 AT2G14760 38.304 342 168 10 10 315 6 340 5.33e-49 167
MS.gene71618.t1 AT4G33880 37.047 359 149 14 10 307 6 348 9.29e-48 164
MS.gene71618.t1 AT5G43175 75.862 87 21 0 221 307 128 214 1.03e-42 147
MS.gene71618.t1 AT1G27740 77.381 84 19 0 224 307 166 249 6.39e-42 146
MS.gene71618.t1 AT5G37800 52.273 88 41 1 206 293 183 269 1.90e-23 98.6
MS.gene71618.t1 AT1G66470 42.222 135 56 5 176 293 134 263 1.09e-22 96.3
MS.gene71618.t1 AT2G24260 51.250 80 39 0 219 298 29 108 2.77e-18 83.2
MS.gene71618.t1 AT4G30980 57.143 70 30 0 219 288 124 193 3.25e-18 84.0
MS.gene71618.t1 AT4G30980 57.143 70 30 0 219 288 172 241 4.83e-18 84.0
MS.gene71618.t1 AT2G24260 57.143 70 30 0 219 288 132 201 6.57e-18 83.6
MS.gene71618.t1 AT5G01305 53.226 62 29 0 223 284 35 96 5.21e-17 77.8
MS.gene71618.t1 AT5G58010 47.619 84 40 1 205 288 83 162 8.88e-17 79.7
MS.gene71618.t1 AT3G21330 58.929 56 23 0 232 287 276 331 1.48e-16 79.7
MS.gene71618.t1 AT4G00120 42.683 82 43 2 218 299 108 185 3.05e-15 73.6
MS.gene71618.t1 AT1G09530 41.333 75 39 1 223 297 340 409 2.61e-13 70.9
MS.gene71618.t1 AT1G09530 41.333 75 39 1 223 297 340 409 2.61e-13 70.9
MS.gene71618.t1 AT1G09530 41.333 75 39 1 223 297 340 409 2.61e-13 70.9
MS.gene71618.t1 AT1G09530 41.333 75 39 1 223 297 340 409 2.61e-13 70.9
MS.gene71618.t1 AT1G09530 41.333 75 39 1 223 297 340 409 2.61e-13 70.9
MS.gene71618.t1 AT1G09530 41.333 75 39 1 223 297 340 409 2.61e-13 70.9
MS.gene71618.t1 AT4G36930 36.486 74 47 0 232 305 198 271 2.63e-12 67.4
MS.gene71618.t1 AT2G20180 46.970 66 30 1 223 288 281 341 3.03e-12 67.4
MS.gene71618.t1 AT2G20180 46.970 66 30 1 223 288 281 341 3.03e-12 67.4
MS.gene71618.t1 AT2G20180 46.970 66 30 1 223 288 281 341 3.03e-12 67.4
MS.gene71618.t1 AT2G20180 46.970 66 30 1 223 288 281 341 3.03e-12 67.4
MS.gene71618.t1 AT2G20180 46.970 66 30 1 223 288 210 270 3.05e-12 67.4
MS.gene71618.t1 AT2G20180 46.970 66 30 1 223 288 210 270 3.05e-12 67.4
MS.gene71618.t1 AT2G20180 46.970 66 30 1 223 288 210 270 3.05e-12 67.4
MS.gene71618.t1 AT4G00050 40.244 82 45 2 214 292 92 172 6.00e-12 65.9
MS.gene71618.t1 AT2G46970 32.323 99 61 2 223 315 190 288 1.28e-11 65.1
MS.gene71618.t1 AT2G46970 32.323 99 61 2 223 315 221 319 1.28e-11 65.5
MS.gene71618.t1 AT2G46970 32.323 99 61 2 223 315 199 297 1.38e-11 65.1
MS.gene71618.t1 AT4G00050 40.244 82 45 2 214 292 194 274 1.52e-11 65.1
MS.gene71618.t1 AT4G00050 40.244 82 45 2 214 292 194 274 1.57e-11 65.1
MS.gene71618.t1 AT5G67110 42.105 76 40 2 215 288 77 150 2.11e-11 62.8
MS.gene71618.t1 AT2G20180 46.875 64 29 1 223 286 281 339 2.14e-11 64.3

Find 57 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATTTAGTCCTCAATATT+TGG 0.162834 1.4:-82256979 MS.gene71618:CDS
TTTCTTCTCCAACAAATTAA+AGG 0.200250 1.4:-82255723 None:intergenic
TTAGGTGCCTCATGTTCTTT+TGG 0.203398 1.4:+82256550 None:intergenic
TTGCTCATAGAAGCAGATTT+TGG 0.214748 1.4:+82256658 None:intergenic
CAAATATTGAGGACTAAATT+TGG 0.216033 1.4:+82256980 None:intergenic
TTCATCTTCCTTTAATTTGT+TGG 0.289475 1.4:+82255715 None:intergenic
CCCATTCTTCAGAAATCAAT+TGG 0.299308 1.4:+82257258 None:intergenic
TTCATTCCATTGTAAGCAAT+TGG 0.326950 1.4:+82255766 None:intergenic
CCCAATTGATTTCTGAAGAA+TGG 0.332468 1.4:-82257259 MS.gene71618:CDS
CAGAAAACATTAGGAATGTT+AGG 0.347576 1.4:-82256687 MS.gene71618:CDS
CAGTACTTGTGCTACTCCCT+TGG 0.355284 1.4:+82257111 None:intergenic
AATGATAGCATTGATCATAA+AGG 0.357619 1.4:-82256930 MS.gene71618:CDS
AAGTCTACCTTAGTTCCATT+TGG 0.373192 1.4:+82256063 None:intergenic
CCAATTGATTTCTGAAGAAT+GGG 0.373736 1.4:-82257258 MS.gene71618:CDS
ATGTTTAGAGCCAGTGAAAC+TGG 0.383865 1.4:-82256904 MS.gene71618:CDS
AGTCTACCTTAGTTCCATTT+GGG 0.385383 1.4:+82256064 None:intergenic
GAAGAATGGGATTCTCTTAG+TGG 0.394320 1.4:-82257245 MS.gene71618:CDS
CTTCTATCCTCTTCTGAAGA+AGG 0.401086 1.4:+82256843 None:intergenic
ATGATAGCATTGATCATAAA+GGG 0.425204 1.4:-82256929 MS.gene71618:CDS
TTCATGAATCAGTTCCTTAG+TGG 0.426280 1.4:-82257197 MS.gene71618:CDS
TGGAACCTACTCATGTGATT+TGG 0.438360 1.4:-82257048 MS.gene71618:CDS
AGAACATGAGGCACCTAAGT+TGG 0.448507 1.4:-82256545 MS.gene71618:CDS
TGCAGGTCTCAGAAAACATT+AGG 0.448557 1.4:-82256696 MS.gene71618:intron
TTGCAAACCCTTGTCCCAAA+TGG 0.465028 1.4:-82256078 MS.gene71618:CDS
ACTTGTAGTGGTGGTAGAAA+AGG 0.466992 1.4:+82257073 None:intergenic
GAACATGAGGCACCTAAGTT+GGG 0.487621 1.4:-82256544 MS.gene71618:CDS
ATGTTATCATCCAAATATTG+AGG 0.490926 1.4:+82256969 None:intergenic
CCTTAGTTCCATTTGGGACA+AGG 0.494234 1.4:+82256070 None:intergenic
CCTTGTCCCAAATGGAACTA+AGG 0.497386 1.4:-82256070 MS.gene71618:intron
AGTACTTGTGCTACTCCCTT+GGG 0.501223 1.4:+82257112 None:intergenic
GCTTACAATGGAATGAACAT+TGG 0.504026 1.4:-82255760 MS.gene71618:CDS
AAGATTTAGGAGCTCAATAG+AGG 0.507018 1.4:-82256796 MS.gene71618:intron
GCAGCAAGAACCAGTTTCAC+TGG 0.514887 1.4:+82256894 None:intergenic
TTCTGAACCTTCTTCAGAAG+AGG 0.515374 1.4:-82256850 MS.gene71618:CDS
TGTTGCCAAATCACATGAGT+AGG 0.518267 1.4:+82257043 None:intergenic
CTTAGTTCCATTTGGGACAA+GGG 0.522424 1.4:+82256071 None:intergenic
ATGCTCTGTGCATCAGTGGC+GGG 0.523660 1.4:+82256496 None:intergenic
TCACATGTTGACTCAATTGG+AGG 0.523673 1.4:-82256592 MS.gene71618:CDS
TGCTAACAATGAAATGATGA+TGG 0.528083 1.4:-82256874 MS.gene71618:CDS
TCTTCAGAAATCAATTGGGC+AGG 0.532125 1.4:+82257263 None:intergenic
CCATTCTTCAGAAATCAATT+GGG 0.537373 1.4:+82257259 None:intergenic
TCTACCACCACTACAAGTAG+TGG 0.548620 1.4:-82257068 MS.gene71618:CDS
TCAGCATGAGGAAAGTAAGA+TGG 0.571753 1.4:+82257149 None:intergenic
TTCTAAGCTCTGAAGATATG+TGG 0.576788 1.4:-82255798 MS.gene71618:CDS
TTCTATGAGCAACAATGAAG+AGG 0.588809 1.4:-82256647 MS.gene71618:CDS
AATGCTCTGTGCATCAGTGG+CGG 0.603587 1.4:+82256495 None:intergenic
TATGCTCCAATTGCTTACAA+TGG 0.606083 1.4:-82255772 MS.gene71618:CDS
GAAGAGGACTTAATGTGGCA+TGG 0.606487 1.4:-82256631 MS.gene71618:CDS
AGATATTAGCACTATGCTTG+AGG 0.620150 1.4:-82255962 MS.gene71618:CDS
GGTTCCACTACTTGTAGTGG+TGG 0.630243 1.4:+82257064 None:intergenic
GTAGGTTCCACTACTTGTAG+TGG 0.640555 1.4:+82257061 None:intergenic
TCTGAGCCCAAAAGAACATG+AGG 0.642713 1.4:-82256557 MS.gene71618:CDS
AAACACATAAAATCAGCATG+AGG 0.655266 1.4:+82257137 None:intergenic
TTGTTGGAGAAGAAAAGCTG+AGG 0.679207 1.4:+82255731 None:intergenic
TAGTGGACAGTACACAGCTG+AGG 0.680277 1.4:-82257228 MS.gene71618:CDS
ACAATGAAGAGGACTTAATG+TGG 0.680942 1.4:-82256636 MS.gene71618:CDS
ATAAATGCTCTGTGCATCAG+TGG 0.685863 1.4:+82256492 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATTAATTAATTTATCTATT+TGG - chr1.4:82257164-82257183 MS.gene71618:CDS 10.0%
!! TTCAAATAAGTCAATACAAA+AGG - chr1.4:82256787-82256806 MS.gene71618:intron 20.0%
!!! GGTAATAAAAATACAAGTTT+TGG - chr1.4:82255819-82255838 MS.gene71618:intron 20.0%
!!! TCACTAGATTAAATTTTGTT+TGG - chr1.4:82256598-82256617 MS.gene71618:CDS 20.0%
!!! TTGTATTTTTATTACCACTA+AGG + chr1.4:82255815-82255834 None:intergenic 20.0%
! AACATGTGAAAAACAGTTAT+TGG + chr1.4:82256392-82256411 None:intergenic 25.0%
! AAGGTAGACTTCTTAATTAA+TGG - chr1.4:82256944-82256963 MS.gene71618:CDS 25.0%
! ATCTTCCAAACAAAAAAACA+TGG + chr1.4:82255994-82256013 None:intergenic 25.0%
! ATGAAACTAACAATTGGTTA+AGG - chr1.4:82256969-82256988 MS.gene71618:CDS 25.0%
! ATGGAAATGAAACTAACAAT+TGG - chr1.4:82256963-82256982 MS.gene71618:CDS 25.0%
! ATGGAAATTATATGTAGAGA+AGG + chr1.4:82257115-82257134 None:intergenic 25.0%
! ATGTTATCATCCAAATATTG+AGG + chr1.4:82256029-82256048 None:intergenic 25.0%
! ATTGTAGAAATGTCATTCAA+AGG + chr1.4:82256543-82256562 None:intergenic 25.0%
! ATTTAATCTAGTGACAACAA+TGG + chr1.4:82256592-82256611 None:intergenic 25.0%
! CAAATATTGAGGACTAAATT+TGG + chr1.4:82256018-82256037 None:intergenic 25.0%
! CAAATTTAGTCCTCAATATT+TGG - chr1.4:82256016-82256035 MS.gene71618:intron 25.0%
! GCATATAAGAAACTGAAAAA+TGG + chr1.4:82257134-82257153 None:intergenic 25.0%
! TTGTAGAAATGTCATTCAAA+GGG + chr1.4:82256542-82256561 None:intergenic 25.0%
! TTTCATTGTTTGTGAATTGT+AGG - chr1.4:82257009-82257028 MS.gene71618:CDS 25.0%
!! TGATCATAATTTTACTATGC+AGG - chr1.4:82256282-82256301 MS.gene71618:intron 25.0%
!!! AATGATAGCATTGATCATAA+AGG - chr1.4:82256065-82256084 MS.gene71618:intron 25.0%
!!! ATGATAGCATTGATCATAAA+GGG - chr1.4:82256066-82256085 MS.gene71618:intron 25.0%
AAACACATAAAATCAGCATG+AGG + chr1.4:82255861-82255880 None:intergenic 30.0%
CAGAAAACATTAGGAATGTT+AGG - chr1.4:82256308-82256327 MS.gene71618:intron 30.0%
CCATTCTTCAGAAATCAATT+GGG + chr1.4:82255739-82255758 None:intergenic 30.0%
CTAAATATGTCTCTCATGAA+AGG - chr1.4:82256836-82256855 MS.gene71618:CDS 30.0%
TGCTAACAATGAAATGATGA+TGG - chr1.4:82256121-82256140 MS.gene71618:intron 30.0%
TGTAGAAATGTCATTCAAAG+GGG + chr1.4:82256541-82256560 None:intergenic 30.0%
TTCATTCCATTGTAAGCAAT+TGG + chr1.4:82257232-82257251 None:intergenic 30.0%
! ATTTTATGTGTTTCTCCCAA+GGG - chr1.4:82255868-82255887 MS.gene71618:intron 30.0%
! CCAATTGATTTCTGAAGAAT+GGG - chr1.4:82255737-82255756 MS.gene71618:CDS 30.0%
! GTTTTTGCAGCTTCAAATTA+AGG - chr1.4:82257075-82257094 MS.gene71618:CDS 30.0%
!!! ACTGTCCATGTTTTTTTGTT+TGG - chr1.4:82255986-82256005 MS.gene71618:intron 30.0%
!!! TTTTCACATGTTGACTCAAT+TGG - chr1.4:82256400-82256419 MS.gene71618:intron 30.0%
AAGATTTAGGAGCTCAATAG+AGG - chr1.4:82256199-82256218 MS.gene71618:intron 35.0%
AAGTCTACCTTAGTTCCATT+TGG + chr1.4:82256935-82256954 None:intergenic 35.0%
ACAATGAAGAGGACTTAATG+TGG - chr1.4:82256359-82256378 MS.gene71618:intron 35.0%
AGAACCCTGCAAAAAGATTT+AGG - chr1.4:82256186-82256205 MS.gene71618:intron 35.0%
AGAGGATAGAAGCAAAAACA+TGG - chr1.4:82256163-82256182 MS.gene71618:intron 35.0%
AGATATTAGCACTATGCTTG+AGG - chr1.4:82257033-82257052 MS.gene71618:CDS 35.0%
AGTCTACCTTAGTTCCATTT+GGG + chr1.4:82256934-82256953 None:intergenic 35.0%
AGTGTCACAAGTGTTTATGT+CGG - chr1.4:82256756-82256775 MS.gene71618:intron 35.0%
CCCATTCTTCAGAAATCAAT+TGG + chr1.4:82255740-82255759 None:intergenic 35.0%
GCTGCAAAAACTTCACATAT+TGG + chr1.4:82257066-82257085 None:intergenic 35.0%
GCTTACAATGGAATGAACAT+TGG - chr1.4:82257235-82257254 MS.gene71618:CDS 35.0%
TATGCTCCAATTGCTTACAA+TGG - chr1.4:82257223-82257242 MS.gene71618:CDS 35.0%
TTCATGAATCAGTTCCTTAG+TGG - chr1.4:82255798-82255817 MS.gene71618:CDS 35.0%
TTCTATGAGCAACAATGAAG+AGG - chr1.4:82256348-82256367 MS.gene71618:intron 35.0%
! AGCTCCTAAATCTTTTTGCA+GGG + chr1.4:82256193-82256212 None:intergenic 35.0%
! CCCAATTGATTTCTGAAGAA+TGG - chr1.4:82255736-82255755 MS.gene71618:CDS 35.0%
! CTTGATTTTCTACCCAACTT+AGG + chr1.4:82256466-82256485 None:intergenic 35.0%
! GATTTTATGTGTTTCTCCCA+AGG - chr1.4:82255867-82255886 MS.gene71618:intron 35.0%
! TTGCTCATAGAAGCAGATTT+TGG + chr1.4:82256340-82256359 None:intergenic 35.0%
!! TTCTAAGCTCTGAAGATATG+TGG - chr1.4:82257197-82257216 MS.gene71618:CDS 35.0%
ACTTGTAGTGGTGGTAGAAA+AGG + chr1.4:82255925-82255944 None:intergenic 40.0%
ATAAATGCTCTGTGCATCAG+TGG + chr1.4:82256506-82256525 None:intergenic 40.0%
GAAGAATGGGATTCTCTTAG+TGG - chr1.4:82255750-82255769 MS.gene71618:CDS 40.0%
TCAGCATGAGGAAAGTAAGA+TGG + chr1.4:82255849-82255868 None:intergenic 40.0%
TCTTCAGAAATCAATTGGGC+AGG + chr1.4:82255735-82255754 None:intergenic 40.0%
TGCAGGTCTCAGAAAACATT+AGG - chr1.4:82256299-82256318 MS.gene71618:intron 40.0%
TGGAACCTACTCATGTGATT+TGG - chr1.4:82255947-82255966 MS.gene71618:CDS 40.0%
TGTTGCCAAATCACATGAGT+AGG + chr1.4:82255955-82255974 None:intergenic 40.0%
TTCTGAACCTTCTTCAGAAG+AGG - chr1.4:82256145-82256164 MS.gene71618:intron 40.0%
TTGTTGGAGAAGAAAAGCTG+AGG + chr1.4:82257267-82257286 None:intergenic 40.0%
! ATGTTTAGAGCCAGTGAAAC+TGG - chr1.4:82256091-82256110 MS.gene71618:CDS 40.0%
! CTTAGTTCCATTTGGGACAA+GGG + chr1.4:82256927-82256946 None:intergenic 40.0%
! CTTCTATCCTCTTCTGAAGA+AGG + chr1.4:82256155-82256174 None:intergenic 40.0%
! GAGCTCCTAAATCTTTTTGC+AGG + chr1.4:82256194-82256213 None:intergenic 40.0%
! TAGGTGCCTCATGTTCTTTT+GGG + chr1.4:82256447-82256466 None:intergenic 40.0%
! TTAGGTGCCTCATGTTCTTT+TGG + chr1.4:82256448-82256467 None:intergenic 40.0%
!! TCACATGTTGACTCAATTGG+AGG - chr1.4:82256403-82256422 MS.gene71618:intron 40.0%
CCTTGTCCCAAATGGAACTA+AGG - chr1.4:82256925-82256944 MS.gene71618:CDS 45.0%
GAAGAGGACTTAATGTGGCA+TGG - chr1.4:82256364-82256383 MS.gene71618:intron 45.0%
GTAGGTTCCACTACTTGTAG+TGG + chr1.4:82255937-82255956 None:intergenic 45.0%
TCTACCACCACTACAAGTAG+TGG - chr1.4:82255927-82255946 MS.gene71618:CDS 45.0%
TCTGAGCCCAAAAGAACATG+AGG - chr1.4:82256438-82256457 MS.gene71618:intron 45.0%
TTGCAAACCCTTGTCCCAAA+TGG - chr1.4:82256917-82256936 MS.gene71618:CDS 45.0%
! AGAACATGAGGCACCTAAGT+TGG - chr1.4:82256450-82256469 MS.gene71618:intron 45.0%
! AGTACTTGTGCTACTCCCTT+GGG + chr1.4:82255886-82255905 None:intergenic 45.0%
! CCTTAGTTCCATTTGGGACA+AGG + chr1.4:82256928-82256947 None:intergenic 45.0%
! GAACATGAGGCACCTAAGTT+GGG - chr1.4:82256451-82256470 MS.gene71618:intron 45.0%
AATGCTCTGTGCATCAGTGG+CGG + chr1.4:82256503-82256522 None:intergenic 50.0%
GCAGCAAGAACCAGTTTCAC+TGG + chr1.4:82256104-82256123 None:intergenic 50.0%
GGTTCCACTACTTGTAGTGG+TGG + chr1.4:82255934-82255953 None:intergenic 50.0%
! CAGTACTTGTGCTACTCCCT+TGG + chr1.4:82255887-82255906 None:intergenic 50.0%
! TAGTGGACAGTACACAGCTG+AGG - chr1.4:82255767-82255786 MS.gene71618:CDS 50.0%
ATGCTCTGTGCATCAGTGGC+GGG + chr1.4:82256502-82256521 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 82255726 82257291 82255726 ID=MS.gene71618
chr1.4 mRNA 82255726 82257291 82255726 ID=MS.gene71618.t1;Parent=MS.gene71618
chr1.4 exon 82256797 82257291 82256797 ID=MS.gene71618.t1.exon1;Parent=MS.gene71618.t1
chr1.4 CDS 82256797 82257291 82256797 ID=cds.MS.gene71618.t1;Parent=MS.gene71618.t1
chr1.4 exon 82256486 82256713 82256486 ID=MS.gene71618.t1.exon2;Parent=MS.gene71618.t1
chr1.4 CDS 82256486 82256713 82256486 ID=cds.MS.gene71618.t1;Parent=MS.gene71618.t1
chr1.4 exon 82256071 82256136 82256071 ID=MS.gene71618.t1.exon3;Parent=MS.gene71618.t1
chr1.4 CDS 82256071 82256136 82256071 ID=cds.MS.gene71618.t1;Parent=MS.gene71618.t1
chr1.4 exon 82255921 82255986 82255921 ID=MS.gene71618.t1.exon4;Parent=MS.gene71618.t1
chr1.4 CDS 82255921 82255986 82255921 ID=cds.MS.gene71618.t1;Parent=MS.gene71618.t1
chr1.4 exon 82255726 82255821 82255726 ID=MS.gene71618.t1.exon5;Parent=MS.gene71618.t1
chr1.4 CDS 82255726 82255821 82255726 ID=cds.MS.gene71618.t1;Parent=MS.gene71618.t1
Gene Sequence

>MS.gene71618

ATGGAACCTGCCCAATTGATTTCTGAAGAATGGGATTCTCTTAGTGGACAGTACACAGCTGAGGAAGCTGACTTCATGAATCAGTTCCTTAGTGGTAATAAAAATACAAGTTTTGGCATGCCATCTTACTTTCCTCATGCTGATTTTATGTGTTTCTCCCAAGGGAGTAGCACAAGTACTGATAATAGTGCTAATACCTTTTCTACCACCACTACAAGTAGTGGAACCTACTCATGTGATTTGGCAACAAACTTTGATTCACTGTCCATGTTTTTTTGTTTGGAAGATGCCAAATTTAGTCCTCAATATTTGGATGATAACATAAGTAAACACATAAATAATGATAGCATTGATCATAAAGGGTCATGTTTAGAGCCAGTGAAACTGGTTCTTGCTGCTAACAATGAAATGATGATGGTTTCTGAACCTTCTTCAGAAGAGGATAGAAGCAAAAACATGGAGAACCCTGCAAAAAGATTTAGGAGCTCAATAGAGGTACAATAATATAATAGTATGAAGTTTAAGTTACGTTGTTTATTTGTGTGAGATTAGATTGTGATCATAATTTTACTATGCAGGTCTCAGAAAACATTAGGAATGTTAGGAAGTGTCCAAAATCTGCTTCTATGAGCAACAATGAAGAGGACTTAATGTGGCATGGCTCCAATAACTGTTTTTCACATGTTGACTCAATTGGAGGAACATCTTCAAGTCTGAGCCCAAAAGAACATGAGGCACCTAAGTTGGGTAGAAAATCAAGAGCAGCAAGTAGTCCCGCCACTGATGCACAGAGCATTTATGCAAGAGTAAGTCCCCTTTGAATGACATTTCTACAATAGAATCATGATGAATTATAATACATTCCATTGTTGTCACTAGATTAAATTTTGTTTGGATAAACAACTTAATTAAGCACTTATCGCATACATAAATGTGTATGTATAAGTTATTTTTTTGACTTACTATTTTCATATAAACTACTAGTTGTTTTCATAATGTGAACATGTCATATGTTTTCATAAACTCTCAAAGTGTCACAAGTGTTTATGTCGGTAAATAAGTTCAAATAAGTCAATACAAAAGGTATTACATTCTTGTCTTTGCTTTTAGCTAAATATGTCTCTCATGAAAGGTTTATTTTCTTTTGTTCTGCAGAAGAGAAGAGAAAGAATAAATGAAAGATTGAGAATCTTGCAAACCCTTGTCCCAAATGGAACTAAGGTAGACTTCTTAATTAATGGAAATGAAACTAACAATTGGTTAAGGTGTACAAATTCTCAAATTTTCATTGTTTGTGAATTGTAGGTAGATATTAGCACTATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTGCAGCTTCAAATTAAGGTAACAATTTGAGAACCTTCTCTACATATAATTTCCATTTTTCAGTTTCTTATATGCAAAAGATAATGATTAATTAATTTATCTATTTGGATGAAACAGCTTCTAAGCTCTGAAGATATGTGGATGTATGCTCCAATTGCTTACAATGGAATGAACATTGGATTAGACCTCAGCTTTTCTTCTCCAACAAATTAA
Protein sequence

>MS.gene71618.t1

MEPAQLISEEWDSLSGQYTAEEADFMNQFLSGNKNTSFGMPSYFPHADFMCFSQGSSTSTDNSANTFSTTTTSSGTYSCDLATNFDSLSMFFCLEDAKFSPQYLDDNISKHINNDSIDHKGSCLEPVKLVLAANNEMMMVSEPSSEEDRSKNMENPAKRFRSSIEVSENIRNVRKCPKSASMSNNEEDLMWHGSNNCFSHVDSIGGTSSSLSPKEHEAPKLGRKSRAASSPATDAQSIYARKRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSEDMWMYAPIAYNGMNIGLDLSFSSPTN