AlfalfaGEDB | MS.gene71619

M. sativa cultivar XinJiangDaYe / MS.gene71619

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71619.t1	XP_003592481.1	70.6	306	57	3	1	293	1	286	1.50E-104	389.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71619.t1	Q7XHI9	37.9	335	146	9	10	294	6	328	3.0e-37	157.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71619.t1	G7IET1	70.6	306	57	3	1	293	1	286	1.1e-104	389.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene71619.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71619.t1	MTR_1g106470	70.261	306	58	3	1	293	1	286	4.30e-141	399
MS.gene71619.t1	MTR_1g106470	64.591	257	58	3	1	244	1	237	5.20e-102	298
MS.gene71619.t1	MTR_5g005110	45.994	337	122	14	1	297	1	317	3.42e-70	220
MS.gene71619.t1	MTR_1g106480	69.412	170	8	3	154	293	1	156	1.47e-68	210
MS.gene71619.t1	MTR_1g106460	40.179	336	153	9	1	295	1	329	3.69e-61	197
MS.gene71619.t1	MTR_3g103030	51.724	174	77	3	119	287	142	313	2.17e-48	164
MS.gene71619.t1	MTR_1g106490	69.231	104	28	1	23	122	24	127	1.25e-42	143
MS.gene71619.t1	MTR_1g018090	81.818	77	14	0	202	278	273	349	3.88e-38	138
MS.gene71619.t1	MTR_5g005110	39.643	280	114	12	1	242	1	263	3.61e-36	130
MS.gene71619.t1	MTR_1g106460	32.270	282	144	8	1	241	1	276	1.72e-27	108

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71619.t1	AT2G14760	37.805	328	156	11	10	294	6	328	5.70e-49	166
MS.gene71619.t1	AT2G14760	37.135	342	152	14	10	294	6	341	2.51e-45	157
MS.gene71619.t1	AT4G33880	35.756	344	152	12	10	285	6	348	1.88e-44	154
MS.gene71619.t1	AT5G43175	71.134	97	28	0	189	285	118	214	3.72e-44	150
MS.gene71619.t1	AT1G27740	73.563	87	23	0	199	285	163	249	1.73e-41	144
MS.gene71619.t1	AT5G37800	50.000	98	44	2	174	271	177	269	7.78e-23	96.3
MS.gene71619.t1	AT1G66470	58.333	72	29	1	200	271	193	263	6.93e-22	93.6
MS.gene71619.t1	AT2G24260	51.852	81	39	0	197	277	29	109	2.02e-19	85.9
MS.gene71619.t1	AT2G24260	58.571	70	29	0	197	266	132	201	7.38e-19	85.9
MS.gene71619.t1	AT4G30980	57.143	70	30	0	197	266	124	193	1.45e-18	84.3

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Find 61 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATTTGCGGGATGAG+AGG	0.581008	1.4:-82263165	MS.gene71619:CDS
AAACAATTTGCGGGATGAGA+GGG	0.575684	1.4:-82263164	MS.gene71619:CDS
AAAGGATTAGAGTTAACCCG+TGG	0.678724	1.4:+82262794	None:intergenic
AAATCTACCTTAGTTCCATT+TGG	0.360868	1.4:+82262312	None:intergenic
AACCCGTGGAAAACAGTTGT+TGG	0.507428	1.4:+82262808	None:intergenic
AAGATTTAGGAGCTCACTAG+AGG	0.634903	1.4:-82263080	MS.gene71619:intron
AAGTTATGATCCAAATATTG+TGG	0.544900	1.4:+82263247	None:intergenic
AATGATGATGACTTCAGAAG+AGG	0.597972	1.4:-82263134	MS.gene71619:CDS
ACAATGAAGAGGGCCTAACG+TGG	0.686185	1.4:-82262838	MS.gene71619:CDS
ACGTTAGGCCCTCTTCATTG+TGG	0.582294	1.4:+82262840	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCTACCTTAGTTCCATT+TGG	+	chr1.4:82263121-82263140	None:intergenic	30.0%
ACAGTAGTCAGTAGTTTAAT+TGG	+	chr1.4:82262978-82262997	None:intergenic	30.0%
ACTAAAGAAATGTCCTTCAA+AGG	+	chr1.4:82262794-82262813	None:intergenic	30.0%
AGAGGATAAAAGCAAAAACT+TGG	-	chr1.4:82262314-82262333	MS.gene71619:intron	30.0%
ATCTTCCATGGAAAAAAACA+TGG	+	chr1.4:82262151-82262170	None:intergenic	30.0%
CCATTCTTCAGAAATCAATT+GGG	+	chr1.4:82261974-82261993	None:intergenic	30.0%
CTAAAGAAATGTCCTTCAAA+GGG	+	chr1.4:82262793-82262812	None:intergenic	30.0%
GAACTAAGGTAGATTTCTTA+AGG	-	chr1.4:82263125-82263144	MS.gene71619:CDS	30.0%
GAGGATAAAAGCAAAAACTT+GGG	-	chr1.4:82262315-82262334	MS.gene71619:intron	30.0%
TCTTCCATGGAAAAAAACAT+GGG	+	chr1.4:82262150-82262169	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	82261961	82263491	82261961	ID=MS.gene71619
chr1.4	mRNA	82261961	82263491	82261961	ID=MS.gene71619.t1;Parent=MS.gene71619
chr1.4	exon	82263081	82263491	82263081	ID=MS.gene71619.t1.exon1;Parent=MS.gene71619.t1
chr1.4	CDS	82263081	82263491	82263081	ID=cds.MS.gene71619.t1;Parent=MS.gene71619.t1
chr1.4	exon	82262670	82262915	82262670	ID=MS.gene71619.t1.exon2;Parent=MS.gene71619.t1
chr1.4	CDS	82262670	82262915	82262670	ID=cds.MS.gene71619.t1;Parent=MS.gene71619.t1
chr1.4	exon	82262320	82262385	82262320	ID=MS.gene71619.t1.exon3;Parent=MS.gene71619.t1
chr1.4	CDS	82262320	82262385	82262320	ID=cds.MS.gene71619.t1;Parent=MS.gene71619.t1
chr1.4	exon	82262158	82262223	82262158	ID=MS.gene71619.t1.exon4;Parent=MS.gene71619.t1
chr1.4	CDS	82262158	82262223	82262158	ID=cds.MS.gene71619.t1;Parent=MS.gene71619.t1
chr1.4	exon	82261961	82262065	82261961	ID=MS.gene71619.t1.exon5;Parent=MS.gene71619.t1
chr1.4	CDS	82261961	82262065	82261961	ID=cds.MS.gene71619.t1;Parent=MS.gene71619.t1

Gene Sequence

>MS.gene71619

ATGGAATCTGCCCAATTGATTTCTGAAGAATGGGATTCTCTTAGTGGACAGTACACAGTTGAGGAAGCTGACTTCATGGCTCAGTTCCTTGGTTGTAATGGAAACACCAGTTTTGCCATGCCATCTTATTTTCCTTCTAGTAATGGAACCTATTCATGTGATTTGGGAACAAATATTGATTCCTTGCCCATGTTTTTTTCCATGGAAGATGCCAAATTTAGTCCACAATATTTGGATCATAACTTAACCAAAAAGATAAACTATGAATGCATTAATCATGAAGGGCCGGGTTTAGTTCTTGTTGAAAACAATTTGCGGGATGAGAGGGAGCATGAAATGATGATGACTTCAGAAGAGGATAAAAGCAAAAACTTGGGAAACCCTGCAAAAAGATTTAGGAGCTCACTAGAGGTATAATAATAGTTAAGGTATTTATTATTGACAAAAAATAGTTGATGTTAAATTAAACTTTGAAAACGACAAATAAATAGAAATAATTTTTTCTACAAAAAAGCAACAAGTTTAGAAGCTACTACGTTGATTGTTTGAGATTTTAATCATGATTTTACTATGTAGGTTTCAGAAAATATAAGGAATGTTAGGAAATGTCCAAAATCTGGTTCTATGAGCCACAATGAAGAGGGCCTAACGTGGCATGGCTCCAACAACTGTTTTCCACGGGTTAACTCTAATCCTTTTCTGGAGCAAAATGGAGGAAAACCTTCAATTTTAAGCCTAAAAGAACCTGAAGCACCTAAGTTGCGTAGAAAATCGAAGGCAGGAAGTGGTCCTGCCACTGATGCACAGAGCATTTATGCAAGAGTAAGTTCCCTTTGAAGGACATTTCTTTAGTGCATATTTGGATTCAAGTGAGTTATGCTGAATCACAATATGTTACCATGATTTTGGTAAAAATTACGATTCAGATTTCAATCATTGTGCCATCGTGATTCATCAAATTCACCTTAATTCTAAACACGCACTTAATAAAATCATGATGAAGAATAGTACATGCCAATTAAACTACTGACTACTGTATTGGTAACATTTTCTTGCTTTTAGTTAAATGTCTCTCATTATAGGTTTTTTCCTCATGTTTTGTGCAGAGGAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCTTGCAAACTCTTGTTCCAAATGGAACTAAGGTAGATTTCTTAAGGACAACAATATTGAACTATTACTCAATAATGGGTTAAGATGGTCAAATTCTCAAACTTTTTTTTTTTTGTTGTGAATTGTAGGTGGATATTAGTACCATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTGCAGCTTCAAATTAAGGTAACAATTTGAGAAACTTCCAATTTTCAATTTCTTATATGCAAAACATAAATATTAATTCATTGTTTATTTATTTATTGGATATGAAACAGCTTTTGAGCTCTGAAGATATGTGGATGTATGCTCCAATTGCTTACAATGGAATAAATATTGGATTAGACCTCAGCTTCTCTTCTCCAACTAAATTAGGAAGATGA

Protein sequence

>MS.gene71619.t1

MESAQLISEEWDSLSGQYTVEEADFMAQFLGCNGNTSFAMPSYFPSSNGTYSCDLGTNIDSLPMFFSMEDAKFSPQYLDHNLTKKINYECINHEGPGLVLVENNLRDEREHEMMMTSEEDKSKNLGNPAKRFRSSLEVSENIRNVRKCPKSGSMSHNEEGLTWHGSNNCFPRVNSNPFLEQNGGKPSILSLKEPEAPKLRRKSKAGSGPATDAQSIYARRRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSEDMWMYAPIAYNGINIGLDLSFSSPTKLGR