Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71619.t1 | XP_003592481.1 | 70.6 | 306 | 57 | 3 | 1 | 293 | 1 | 286 | 1.50E-104 | 389.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71619.t1 | Q7XHI9 | 37.9 | 335 | 146 | 9 | 10 | 294 | 6 | 328 | 3.0e-37 | 157.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71619.t1 | G7IET1 | 70.6 | 306 | 57 | 3 | 1 | 293 | 1 | 286 | 1.1e-104 | 389.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene71619.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71619.t1 | MTR_1g106470 | 70.261 | 306 | 58 | 3 | 1 | 293 | 1 | 286 | 4.30e-141 | 399 |
| MS.gene71619.t1 | MTR_1g106470 | 64.591 | 257 | 58 | 3 | 1 | 244 | 1 | 237 | 5.20e-102 | 298 |
| MS.gene71619.t1 | MTR_5g005110 | 45.994 | 337 | 122 | 14 | 1 | 297 | 1 | 317 | 3.42e-70 | 220 |
| MS.gene71619.t1 | MTR_1g106480 | 69.412 | 170 | 8 | 3 | 154 | 293 | 1 | 156 | 1.47e-68 | 210 |
| MS.gene71619.t1 | MTR_1g106460 | 40.179 | 336 | 153 | 9 | 1 | 295 | 1 | 329 | 3.69e-61 | 197 |
| MS.gene71619.t1 | MTR_3g103030 | 51.724 | 174 | 77 | 3 | 119 | 287 | 142 | 313 | 2.17e-48 | 164 |
| MS.gene71619.t1 | MTR_1g106490 | 69.231 | 104 | 28 | 1 | 23 | 122 | 24 | 127 | 1.25e-42 | 143 |
| MS.gene71619.t1 | MTR_1g018090 | 81.818 | 77 | 14 | 0 | 202 | 278 | 273 | 349 | 3.88e-38 | 138 |
| MS.gene71619.t1 | MTR_5g005110 | 39.643 | 280 | 114 | 12 | 1 | 242 | 1 | 263 | 3.61e-36 | 130 |
| MS.gene71619.t1 | MTR_1g106460 | 32.270 | 282 | 144 | 8 | 1 | 241 | 1 | 276 | 1.72e-27 | 108 |
| MS.gene71619.t1 | MTR_5g079500 | 52.809 | 89 | 41 | 1 | 183 | 271 | 199 | 286 | 2.79e-24 | 100 |
| MS.gene71619.t1 | MTR_8g093500 | 55.072 | 69 | 31 | 0 | 199 | 267 | 110 | 178 | 9.40e-18 | 81.6 |
| MS.gene71619.t1 | MTR_4g131160 | 56.716 | 67 | 29 | 0 | 200 | 266 | 193 | 259 | 3.76e-17 | 81.3 |
| MS.gene71619.t1 | MTR_3g101810 | 42.056 | 107 | 56 | 2 | 193 | 297 | 163 | 265 | 3.82e-17 | 79.7 |
| MS.gene71619.t1 | MTR_4g131160 | 56.716 | 67 | 29 | 0 | 200 | 266 | 196 | 262 | 3.93e-17 | 81.3 |
| MS.gene71619.t1 | MTR_1g080890 | 53.425 | 73 | 34 | 0 | 194 | 266 | 184 | 256 | 1.52e-16 | 79.3 |
| MS.gene71619.t1 | MTR_7g069590 | 56.364 | 55 | 24 | 0 | 210 | 264 | 33 | 87 | 3.09e-15 | 72.0 |
| MS.gene71619.t1 | MTR_1g018090 | 72.727 | 44 | 12 | 0 | 202 | 245 | 273 | 316 | 7.65e-14 | 71.2 |
| MS.gene71619.t1 | MTR_1g084980 | 50.877 | 57 | 28 | 0 | 210 | 266 | 469 | 525 | 7.94e-14 | 72.0 |
| MS.gene71619.t1 | MTR_1g019240 | 38.824 | 85 | 50 | 1 | 196 | 280 | 80 | 162 | 9.73e-14 | 70.1 |
| MS.gene71619.t1 | MTR_3g449770 | 41.772 | 79 | 36 | 2 | 199 | 272 | 300 | 373 | 6.25e-13 | 69.3 |
| MS.gene71619.t1 | MTR_7g053410 | 45.455 | 88 | 45 | 2 | 182 | 266 | 294 | 381 | 2.08e-12 | 67.8 |
| MS.gene71619.t1 | MTR_7g053410 | 47.368 | 76 | 39 | 1 | 192 | 266 | 306 | 381 | 2.33e-12 | 67.4 |
| MS.gene71619.t1 | MTR_5g017040 | 39.706 | 68 | 41 | 0 | 212 | 279 | 114 | 181 | 4.19e-12 | 66.2 |
| MS.gene71619.t1 | MTR_8g012290 | 38.614 | 101 | 52 | 2 | 192 | 291 | 280 | 371 | 2.53e-11 | 64.3 |
| MS.gene71619.t1 | MTR_8g012290 | 38.614 | 101 | 52 | 2 | 192 | 291 | 280 | 371 | 2.54e-11 | 64.3 |
| MS.gene71619.t1 | MTR_7g099540 | 45.614 | 57 | 31 | 0 | 210 | 266 | 259 | 315 | 2.57e-11 | 64.3 |
| MS.gene71619.t1 | MTR_1g070870 | 47.423 | 97 | 48 | 2 | 173 | 266 | 90 | 186 | 4.58e-11 | 62.8 |
| MS.gene71619.t1 | MTR_1g069155 | 38.889 | 72 | 44 | 0 | 195 | 266 | 309 | 380 | 5.54e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71619.t1 | AT2G14760 | 37.805 | 328 | 156 | 11 | 10 | 294 | 6 | 328 | 5.70e-49 | 166 |
| MS.gene71619.t1 | AT2G14760 | 37.135 | 342 | 152 | 14 | 10 | 294 | 6 | 341 | 2.51e-45 | 157 |
| MS.gene71619.t1 | AT4G33880 | 35.756 | 344 | 152 | 12 | 10 | 285 | 6 | 348 | 1.88e-44 | 154 |
| MS.gene71619.t1 | AT5G43175 | 71.134 | 97 | 28 | 0 | 189 | 285 | 118 | 214 | 3.72e-44 | 150 |
| MS.gene71619.t1 | AT1G27740 | 73.563 | 87 | 23 | 0 | 199 | 285 | 163 | 249 | 1.73e-41 | 144 |
| MS.gene71619.t1 | AT5G37800 | 50.000 | 98 | 44 | 2 | 174 | 271 | 177 | 269 | 7.78e-23 | 96.3 |
| MS.gene71619.t1 | AT1G66470 | 58.333 | 72 | 29 | 1 | 200 | 271 | 193 | 263 | 6.93e-22 | 93.6 |
| MS.gene71619.t1 | AT2G24260 | 51.852 | 81 | 39 | 0 | 197 | 277 | 29 | 109 | 2.02e-19 | 85.9 |
| MS.gene71619.t1 | AT2G24260 | 58.571 | 70 | 29 | 0 | 197 | 266 | 132 | 201 | 7.38e-19 | 85.9 |
| MS.gene71619.t1 | AT4G30980 | 57.143 | 70 | 30 | 0 | 197 | 266 | 124 | 193 | 1.45e-18 | 84.3 |
| MS.gene71619.t1 | AT4G30980 | 57.143 | 70 | 30 | 0 | 197 | 266 | 172 | 241 | 1.71e-18 | 85.1 |
| MS.gene71619.t1 | AT5G58010 | 54.795 | 73 | 31 | 1 | 196 | 266 | 90 | 162 | 8.26e-17 | 79.3 |
| MS.gene71619.t1 | AT3G21330 | 58.929 | 56 | 23 | 0 | 210 | 265 | 276 | 331 | 1.94e-16 | 79.3 |
| MS.gene71619.t1 | AT5G01305 | 51.613 | 62 | 30 | 0 | 201 | 262 | 35 | 96 | 7.31e-16 | 74.3 |
| MS.gene71619.t1 | AT4G00120 | 53.704 | 54 | 25 | 0 | 212 | 265 | 121 | 174 | 3.20e-15 | 73.2 |
| MS.gene71619.t1 | AT1G09530 | 43.939 | 66 | 37 | 0 | 210 | 275 | 344 | 409 | 3.24e-13 | 70.1 |
| MS.gene71619.t1 | AT1G09530 | 43.939 | 66 | 37 | 0 | 210 | 275 | 344 | 409 | 3.24e-13 | 70.1 |
| MS.gene71619.t1 | AT1G09530 | 43.939 | 66 | 37 | 0 | 210 | 275 | 344 | 409 | 3.24e-13 | 70.1 |
| MS.gene71619.t1 | AT1G09530 | 43.939 | 66 | 37 | 0 | 210 | 275 | 344 | 409 | 3.24e-13 | 70.1 |
| MS.gene71619.t1 | AT1G09530 | 43.939 | 66 | 37 | 0 | 210 | 275 | 344 | 409 | 3.24e-13 | 70.1 |
| MS.gene71619.t1 | AT1G09530 | 43.939 | 66 | 37 | 0 | 210 | 275 | 344 | 409 | 3.24e-13 | 70.1 |
| MS.gene71619.t1 | AT4G36930 | 37.838 | 74 | 46 | 0 | 210 | 283 | 198 | 271 | 1.25e-12 | 67.8 |
| MS.gene71619.t1 | AT5G50915 | 34.395 | 157 | 91 | 5 | 139 | 287 | 65 | 217 | 1.39e-12 | 67.0 |
| MS.gene71619.t1 | AT5G50915 | 34.395 | 157 | 91 | 5 | 139 | 287 | 65 | 217 | 1.39e-12 | 67.0 |
| MS.gene71619.t1 | AT5G50915 | 34.395 | 157 | 91 | 5 | 139 | 287 | 65 | 217 | 1.66e-12 | 66.6 |
| MS.gene71619.t1 | AT5G50915 | 34.395 | 157 | 91 | 5 | 139 | 287 | 65 | 217 | 1.66e-12 | 66.6 |
| MS.gene71619.t1 | AT3G23690 | 44.737 | 76 | 41 | 1 | 192 | 266 | 180 | 255 | 1.62e-11 | 64.7 |
| MS.gene71619.t1 | AT2G20180 | 47.368 | 57 | 30 | 0 | 210 | 266 | 214 | 270 | 1.81e-11 | 64.7 |
| MS.gene71619.t1 | AT2G20180 | 47.368 | 57 | 30 | 0 | 210 | 266 | 214 | 270 | 1.81e-11 | 64.7 |
| MS.gene71619.t1 | AT2G20180 | 47.368 | 57 | 30 | 0 | 210 | 266 | 214 | 270 | 1.81e-11 | 64.7 |
| MS.gene71619.t1 | AT2G20180 | 47.368 | 57 | 30 | 0 | 210 | 266 | 285 | 341 | 1.97e-11 | 64.7 |
| MS.gene71619.t1 | AT2G20180 | 47.368 | 57 | 30 | 0 | 210 | 266 | 285 | 341 | 1.97e-11 | 64.7 |
| MS.gene71619.t1 | AT2G20180 | 47.368 | 57 | 30 | 0 | 210 | 266 | 285 | 341 | 1.97e-11 | 64.7 |
| MS.gene71619.t1 | AT2G20180 | 47.368 | 57 | 30 | 0 | 210 | 266 | 285 | 341 | 1.97e-11 | 64.7 |
| MS.gene71619.t1 | AT5G48560 | 46.053 | 76 | 40 | 1 | 192 | 266 | 290 | 365 | 2.13e-11 | 64.7 |
| MS.gene71619.t1 | AT5G48560 | 46.053 | 76 | 40 | 1 | 192 | 266 | 290 | 365 | 2.28e-11 | 64.3 |
| MS.gene71619.t1 | AT4G00050 | 31.667 | 120 | 67 | 2 | 151 | 270 | 68 | 172 | 4.01e-11 | 63.2 |
Find 61 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTTAGTCCACAATATT+TGG | 0.147520 | 1.4:-82263257 | MS.gene71619:CDS |
| CAAATATTGTGGACTAAATT+TGG | 0.154244 | 1.4:+82263258 | None:intergenic |
| TGGCTCATAGAACCAGATTT+TGG | 0.215361 | 1.4:+82262860 | None:intergenic |
| TTCTCTTCTCCAACTAAATT+AGG | 0.240816 | 1.4:-82261968 | MS.gene71619:CDS |
| GCTTACAATGGAATAAATAT+TGG | 0.247349 | 1.4:-82262004 | MS.gene71619:CDS |
| TGGAACCTATTCATGTGATT+TGG | 0.257419 | 1.4:-82263326 | MS.gene71619:CDS |
| CCCATTCTTCAGAAATCAAT+TGG | 0.299308 | 1.4:+82263458 | None:intergenic |
| CTACGCAACTTAGGTGCTTC+AGG | 0.318498 | 1.4:+82262725 | None:intergenic |
| CAGAAAATATAAGGAATGTT+AGG | 0.319597 | 1.4:-82262889 | MS.gene71619:CDS |
| CCCAATTGATTTCTGAAGAA+TGG | 0.332468 | 1.4:-82263459 | MS.gene71619:CDS |
| TGTTCCCAAATCACATGAAT+AGG | 0.335178 | 1.4:+82263321 | None:intergenic |
| TGTAGGTTTCAGAAAATATA+AGG | 0.339371 | 1.4:-82262898 | MS.gene71619:intron |
| TTTATTCCATTGTAAGCAAT+TGG | 0.346999 | 1.4:+82262010 | None:intergenic |
| GGAACCTATTCATGTGATTT+GGG | 0.350013 | 1.4:-82263325 | MS.gene71619:CDS |
| ATAAGATGGCATGGCAAAAC+TGG | 0.354371 | 1.4:+82263363 | None:intergenic |
| GACTTCATGGCTCAGTTCCT+TGG | 0.360528 | 1.4:-82263400 | MS.gene71619:CDS |
| AAATCTACCTTAGTTCCATT+TGG | 0.360868 | 1.4:+82262312 | None:intergenic |
| ATTCATCTTCCTAATTTAGT+TGG | 0.363312 | 1.4:+82261959 | None:intergenic |
| CCAATTGATTTCTGAAGAAT+GGG | 0.373736 | 1.4:-82263458 | MS.gene71619:CDS |
| GTTAGGAAATGTCCAAAATC+TGG | 0.392760 | 1.4:-82262872 | MS.gene71619:CDS |
| GAAGAATGGGATTCTCTTAG+TGG | 0.394320 | 1.4:-82263445 | MS.gene71619:CDS |
| GCTCAGTTCCTTGGTTGTAA+TGG | 0.403811 | 1.4:-82263391 | MS.gene71619:CDS |
| TCTTGTTGAAAACAATTTGC+GGG | 0.406671 | 1.4:-82263173 | MS.gene71619:CDS |
| TTGCAAACTCTTGTTCCAAA+TGG | 0.419165 | 1.4:-82262327 | MS.gene71619:CDS |
| AGTTGAGGAAGCTGACTTCA+TGG | 0.443200 | 1.4:-82263413 | MS.gene71619:CDS |
| TGTTGGAGCCATGCCACGTT+AGG | 0.453646 | 1.4:+82262825 | None:intergenic |
| ACTAAATTTGGCATCTTCCA+TGG | 0.457758 | 1.4:+82263270 | None:intergenic |
| TCTTGTTCCAAATGGAACTA+AGG | 0.473754 | 1.4:-82262319 | MS.gene71619:intron |
| GAATAGGTTCCATTACTAGA+AGG | 0.474086 | 1.4:+82263337 | None:intergenic |
| TATGAATGCATTAATCATGA+AGG | 0.497393 | 1.4:-82263208 | MS.gene71619:CDS |
| TTCTTGTTGAAAACAATTTG+CGG | 0.503995 | 1.4:-82263174 | MS.gene71619:CDS |
| AACCCGTGGAAAACAGTTGT+TGG | 0.507428 | 1.4:+82262808 | None:intergenic |
| TGCATTAATCATGAAGGGCC+GGG | 0.507871 | 1.4:-82263202 | MS.gene71619:CDS |
| ATGCTCTGTGCATCAGTGGC+AGG | 0.521454 | 1.4:+82262680 | None:intergenic |
| GAAGAGAAAGAATAAATGAA+AGG | 0.522466 | 1.4:-82262359 | MS.gene71619:CDS |
| ATGCATTAATCATGAAGGGC+CGG | 0.525603 | 1.4:-82263203 | MS.gene71619:CDS |
| CCATTCTTCAGAAATCAATT+GGG | 0.537373 | 1.4:+82263459 | None:intergenic |
| TTACTAGAAGGAAAATAAGA+TGG | 0.542752 | 1.4:+82263349 | None:intergenic |
| AAGTTATGATCCAAATATTG+TGG | 0.544900 | 1.4:+82263247 | None:intergenic |
| ATGAATGCATTAATCATGAA+GGG | 0.569600 | 1.4:-82263207 | MS.gene71619:CDS |
| AAACAATTTGCGGGATGAGA+GGG | 0.575684 | 1.4:-82263164 | MS.gene71619:CDS |
| AGAAGGAAAATAAGATGGCA+TGG | 0.576864 | 1.4:+82263354 | None:intergenic |
| GAAGAGGGCCTAACGTGGCA+TGG | 0.579675 | 1.4:-82262833 | MS.gene71619:CDS |
| AAAACAATTTGCGGGATGAG+AGG | 0.581008 | 1.4:-82263165 | MS.gene71619:CDS |
| AGAAAATCGAAGGCAGGAAG+TGG | 0.581938 | 1.4:-82262704 | MS.gene71619:CDS |
| ACGTTAGGCCCTCTTCATTG+TGG | 0.582294 | 1.4:+82262840 | None:intergenic |
| TTGCGTAGAAAATCGAAGGC+AGG | 0.583966 | 1.4:-82262710 | MS.gene71619:CDS |
| AATGATGATGACTTCAGAAG+AGG | 0.597972 | 1.4:-82263134 | MS.gene71619:CDS |
| TCTATGAGCCACAATGAAGA+GGG | 0.604923 | 1.4:-82262848 | MS.gene71619:CDS |
| TATGCTCCAATTGCTTACAA+TGG | 0.606083 | 1.4:-82262016 | MS.gene71619:CDS |
| GGATATTAGTACCATGCTTG+AGG | 0.607564 | 1.4:-82262199 | MS.gene71619:CDS |
| TTCTATGAGCCACAATGAAG+AGG | 0.608991 | 1.4:-82262849 | MS.gene71619:CDS |
| TAGTTGGAGAAGAGAAGCTG+AGG | 0.609048 | 1.4:+82261975 | None:intergenic |
| TTGGACAGCTTCCTCAAGCA+TGG | 0.619471 | 1.4:+82262188 | None:intergenic |
| TAAGTTGCGTAGAAAATCGA+AGG | 0.620676 | 1.4:-82262714 | MS.gene71619:CDS |
| TGGTGTTTCCATTACAACCA+AGG | 0.631490 | 1.4:+82263383 | None:intergenic |
| AAGATTTAGGAGCTCACTAG+AGG | 0.634903 | 1.4:-82263080 | MS.gene71619:intron |
| TAGTGGACAGTACACAGTTG+AGG | 0.642898 | 1.4:-82263428 | MS.gene71619:CDS |
| AAAGGATTAGAGTTAACCCG+TGG | 0.678724 | 1.4:+82262794 | None:intergenic |
| ACAATGAAGAGGGCCTAACG+TGG | 0.686185 | 1.4:-82262838 | MS.gene71619:CDS |
| ATAAATGCTCTGTGCATCAG+TGG | 0.693217 | 1.4:+82262676 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATTGTTTATTTATTTAT+TGG | - | chr1.4:82263353-82263372 | MS.gene71619:CDS | 10.0% |
| !! | ATTGAACTATTACTCAATAA+TGG | - | chr1.4:82263156-82263175 | MS.gene71619:CDS | 20.0% |
| !! | GCATATAAGAAATTGAAAAT+TGG | + | chr1.4:82263317-82263336 | None:intergenic | 20.0% |
| !! | TTGAACTATTACTCAATAAT+GGG | - | chr1.4:82263157-82263176 | MS.gene71619:CDS | 20.0% |
| !!! | TAATCATGATTTTACTATGT+AGG | - | chr1.4:82262515-82262534 | MS.gene71619:intron | 20.0% |
| !!! | TAGAGGTATAATAATAGTTA+AGG | - | chr1.4:82262367-82262386 | MS.gene71619:intron | 20.0% |
| !!! | TTTTTTTTGTTGTGAATTGT+AGG | - | chr1.4:82263207-82263226 | MS.gene71619:CDS | 20.0% |
| ! | AAGTTATGATCCAAATATTG+TGG | + | chr1.4:82262186-82262205 | None:intergenic | 25.0% |
| ! | ACATTTCTTTAGTGCATATT+TGG | - | chr1.4:82262801-82262820 | MS.gene71619:CDS | 25.0% |
| ! | AGTTAAATGTCTCTCATTAT+AGG | - | chr1.4:82263021-82263040 | MS.gene71619:intron | 25.0% |
| ! | ATGAATGCATTAATCATGAA+GGG | - | chr1.4:82262223-82262242 | MS.gene71619:intron | 25.0% |
| ! | CAAATTTAGTCCACAATATT+TGG | - | chr1.4:82262173-82262192 | MS.gene71619:CDS | 25.0% |
| ! | CAGAAAATATAAGGAATGTT+AGG | - | chr1.4:82262541-82262560 | MS.gene71619:intron | 25.0% |
| ! | GAAGAGAAAGAATAAATGAA+AGG | - | chr1.4:82263071-82263090 | MS.gene71619:intron | 25.0% |
| ! | GCTTACAATGGAATAAATAT+TGG | - | chr1.4:82263426-82263445 | MS.gene71619:CDS | 25.0% |
| ! | TATGAATGCATTAATCATGA+AGG | - | chr1.4:82262222-82262241 | MS.gene71619:intron | 25.0% |
| ! | TGTAGGTTTCAGAAAATATA+AGG | - | chr1.4:82262532-82262551 | MS.gene71619:intron | 25.0% |
| ! | TTACTAGAAGGAAAATAAGA+TGG | + | chr1.4:82262084-82262103 | None:intergenic | 25.0% |
| ! | TTCTTGTTGAAAACAATTTG+CGG | - | chr1.4:82262256-82262275 | MS.gene71619:intron | 25.0% |
| ! | TTTATTCCATTGTAAGCAAT+TGG | + | chr1.4:82263423-82263442 | None:intergenic | 25.0% |
| !! | ACAATATGTTACCATGATTT+TGG | - | chr1.4:82262847-82262866 | MS.gene71619:CDS | 25.0% |
| !! | CAAATATTGTGGACTAAATT+TGG | + | chr1.4:82262175-82262194 | None:intergenic | 25.0% |
| !! | CGTAATTTTTACCAAAATCA+TGG | + | chr1.4:82262861-82262880 | None:intergenic | 25.0% |
| !! | GCATTCATAGTTTATCTTTT+TGG | + | chr1.4:82262211-82262230 | None:intergenic | 25.0% |
| !! | TCTTTTAGGCTTAAAATTGA+AGG | + | chr1.4:82262684-82262703 | None:intergenic | 25.0% |
| !!! | TCTTATTTTCCTTCTAGTAA+TGG | - | chr1.4:82262084-82262103 | MS.gene71619:intron | 25.0% |
| AAATCTACCTTAGTTCCATT+TGG | + | chr1.4:82263121-82263140 | None:intergenic | 30.0% | |
| ACAGTAGTCAGTAGTTTAAT+TGG | + | chr1.4:82262978-82262997 | None:intergenic | 30.0% | |
| ACTAAAGAAATGTCCTTCAA+AGG | + | chr1.4:82262794-82262813 | None:intergenic | 30.0% | |
| AGAGGATAAAAGCAAAAACT+TGG | - | chr1.4:82262314-82262333 | MS.gene71619:intron | 30.0% | |
| ATCTTCCATGGAAAAAAACA+TGG | + | chr1.4:82262151-82262170 | None:intergenic | 30.0% | |
| CCATTCTTCAGAAATCAATT+GGG | + | chr1.4:82261974-82261993 | None:intergenic | 30.0% | |
| CTAAAGAAATGTCCTTCAAA+GGG | + | chr1.4:82262793-82262812 | None:intergenic | 30.0% | |
| GAACTAAGGTAGATTTCTTA+AGG | - | chr1.4:82263125-82263144 | MS.gene71619:CDS | 30.0% | |
| GAGGATAAAAGCAAAAACTT+GGG | - | chr1.4:82262315-82262334 | MS.gene71619:intron | 30.0% | |
| TCTTCCATGGAAAAAAACAT+GGG | + | chr1.4:82262150-82262169 | None:intergenic | 30.0% | |
| TCTTGTTGAAAACAATTTGC+GGG | - | chr1.4:82262257-82262276 | MS.gene71619:intron | 30.0% | |
| TTCTCTTCTCCAACTAAATT+AGG | - | chr1.4:82263462-82263481 | MS.gene71619:CDS | 30.0% | |
| ! | CCAATTGATTTCTGAAGAAT+GGG | - | chr1.4:82261972-82261991 | MS.gene71619:CDS | 30.0% |
| ! | GTTTTTGCAGCTTCAAATTA+AGG | - | chr1.4:82263273-82263292 | MS.gene71619:CDS | 30.0% |
| ! | TAAACTACTGACTACTGTAT+TGG | - | chr1.4:82262980-82262999 | MS.gene71619:intron | 30.0% |
| ! | TAAGTGCGTGTTTAGAATTA+AGG | + | chr1.4:82262927-82262946 | None:intergenic | 30.0% |
| ! | TTTTCAACAAGAACTAAACC+CGG | + | chr1.4:82262249-82262268 | None:intergenic | 30.0% |
| !! | TACTCAATAATGGGTTAAGA+TGG | - | chr1.4:82263166-82263185 | MS.gene71619:CDS | 30.0% |
| !! | TTTTTGTTGTGAATTGTAGG+TGG | - | chr1.4:82263210-82263229 | MS.gene71619:CDS | 30.0% |
| ACTAAATTTGGCATCTTCCA+TGG | + | chr1.4:82262163-82262182 | None:intergenic | 35.0% | |
| AGAAGGAAAATAAGATGGCA+TGG | + | chr1.4:82262079-82262098 | None:intergenic | 35.0% | |
| CCCATTCTTCAGAAATCAAT+TGG | + | chr1.4:82261975-82261994 | None:intergenic | 35.0% | |
| GAAACCCTGCAAAAAGATTT+AGG | - | chr1.4:82262337-82262356 | MS.gene71619:CDS | 35.0% | |
| GAATAGGTTCCATTACTAGA+AGG | + | chr1.4:82262096-82262115 | None:intergenic | 35.0% | |
| GCTGCAAAAACTTCACATAT+TGG | + | chr1.4:82263264-82263283 | None:intergenic | 35.0% | |
| GGAACCTATTCATGTGATTT+GGG | - | chr1.4:82262105-82262124 | MS.gene71619:intron | 35.0% | |
| GTGAATTTGATGAATCACGA+TGG | + | chr1.4:82262905-82262924 | None:intergenic | 35.0% | |
| GTTAGGAAATGTCCAAAATC+TGG | - | chr1.4:82262558-82262577 | MS.gene71619:intron | 35.0% | |
| TAAGTTGCGTAGAAAATCGA+AGG | - | chr1.4:82262716-82262735 | MS.gene71619:CDS | 35.0% | |
| TATGCTCCAATTGCTTACAA+TGG | - | chr1.4:82263414-82263433 | MS.gene71619:CDS | 35.0% | |
| TCTTGTTCCAAATGGAACTA+AGG | - | chr1.4:82263111-82263130 | MS.gene71619:CDS | 35.0% | |
| TGGAACCTATTCATGTGATT+TGG | - | chr1.4:82262104-82262123 | MS.gene71619:intron | 35.0% | |
| TGTTCCCAAATCACATGAAT+AGG | + | chr1.4:82262112-82262131 | None:intergenic | 35.0% | |
| TTGCAAACTCTTGTTCCAAA+TGG | - | chr1.4:82263103-82263122 | MS.gene71619:CDS | 35.0% | |
| ! | AATGATGATGACTTCAGAAG+AGG | - | chr1.4:82262296-82262315 | MS.gene71619:intron | 35.0% |
| ! | AGCTCCTAAATCTTTTTGCA+GGG | + | chr1.4:82262344-82262363 | None:intergenic | 35.0% |
| ! | CCCAATTGATTTCTGAAGAA+TGG | - | chr1.4:82261971-82261990 | MS.gene71619:CDS | 35.0% |
| ! | GGTTAACTCTAATCCTTTTC+TGG | - | chr1.4:82262641-82262660 | MS.gene71619:intron | 35.0% |
| ! | TTCGATTTTCTACGCAACTT+AGG | + | chr1.4:82262717-82262736 | None:intergenic | 35.0% |
| !!! | AATCCTTTTCTGGAGCAAAA+TGG | - | chr1.4:82262651-82262670 | MS.gene71619:intron | 35.0% |
| !!! | TTTTGAGCTCTGAAGATATG+TGG | - | chr1.4:82263388-82263407 | MS.gene71619:CDS | 35.0% |
| AAAACAATTTGCGGGATGAG+AGG | - | chr1.4:82262265-82262284 | MS.gene71619:intron | 40.0% | |
| AAACAATTTGCGGGATGAGA+GGG | - | chr1.4:82262266-82262285 | MS.gene71619:intron | 40.0% | |
| AAAGGATTAGAGTTAACCCG+TGG | + | chr1.4:82262639-82262658 | None:intergenic | 40.0% | |
| AAGATTTAGGAGCTCACTAG+AGG | - | chr1.4:82262350-82262369 | MS.gene71619:CDS | 40.0% | |
| ATAAATGCTCTGTGCATCAG+TGG | + | chr1.4:82262757-82262776 | None:intergenic | 40.0% | |
| ATAAGATGGCATGGCAAAAC+TGG | + | chr1.4:82262070-82262089 | None:intergenic | 40.0% | |
| ATGCATTAATCATGAAGGGC+CGG | - | chr1.4:82262227-82262246 | MS.gene71619:intron | 40.0% | |
| CAAGAGTAAGTTCCCTTTGA+AGG | - | chr1.4:82262778-82262797 | MS.gene71619:CDS | 40.0% | |
| CATGGAAAAAAACATGGGCA+AGG | + | chr1.4:82262145-82262164 | None:intergenic | 40.0% | |
| GAAGAATGGGATTCTCTTAG+TGG | - | chr1.4:82261985-82262004 | MS.gene71619:CDS | 40.0% | |
| GGATATTAGTACCATGCTTG+AGG | - | chr1.4:82263231-82263250 | MS.gene71619:CDS | 40.0% | |
| TCTATGAGCCACAATGAAGA+GGG | - | chr1.4:82262582-82262601 | MS.gene71619:intron | 40.0% | |
| TGGTGTTTCCATTACAACCA+AGG | + | chr1.4:82262050-82262069 | None:intergenic | 40.0% | |
| TTCTATGAGCCACAATGAAG+AGG | - | chr1.4:82262581-82262600 | MS.gene71619:intron | 40.0% | |
| ! | GAGCTCCTAAATCTTTTTGC+AGG | + | chr1.4:82262345-82262364 | None:intergenic | 40.0% |
| ! | TGGCTCATAGAACCAGATTT+TGG | + | chr1.4:82262573-82262592 | None:intergenic | 40.0% |
| ! | TTTCCTCATGTTTTGTGCAG+AGG | - | chr1.4:82263047-82263066 | MS.gene71619:intron | 40.0% |
| !! | TAGGTGCTTCAGGTTCTTTT+AGG | + | chr1.4:82262698-82262717 | None:intergenic | 40.0% |
| !!! | CTTGCCCATGTTTTTTTCCA+TGG | - | chr1.4:82262143-82262162 | MS.gene71619:intron | 40.0% |
| AACCCGTGGAAAACAGTTGT+TGG | + | chr1.4:82262625-82262644 | None:intergenic | 45.0% | |
| AGAAAATCGAAGGCAGGAAG+TGG | - | chr1.4:82262726-82262745 | MS.gene71619:CDS | 45.0% | |
| GCTCAGTTCCTTGGTTGTAA+TGG | - | chr1.4:82262039-82262058 | MS.gene71619:CDS | 45.0% | |
| TAGTTGGAGAAGAGAAGCTG+AGG | + | chr1.4:82263458-82263477 | None:intergenic | 45.0% | |
| TCTCCTCTGCACAAAACATG+AGG | + | chr1.4:82263053-82263072 | None:intergenic | 45.0% | |
| TGCATTAATCATGAAGGGCC+GGG | - | chr1.4:82262228-82262247 | MS.gene71619:intron | 45.0% | |
| TTGCGTAGAAAATCGAAGGC+AGG | - | chr1.4:82262720-82262739 | MS.gene71619:CDS | 45.0% | |
| ! | AGTTGAGGAAGCTGACTTCA+TGG | - | chr1.4:82262017-82262036 | MS.gene71619:CDS | 45.0% |
| ! | CCTCCATTTTGCTCCAGAAA+AGG | + | chr1.4:82262657-82262676 | None:intergenic | 45.0% |
| ! | CTCCAACAACTGTTTTCCAC+GGG | - | chr1.4:82262620-82262639 | MS.gene71619:intron | 45.0% |
| ! | GCTCCAACAACTGTTTTCCA+CGG | - | chr1.4:82262619-82262638 | MS.gene71619:intron | 45.0% |
| ! | TAGTGGACAGTACACAGTTG+AGG | - | chr1.4:82262002-82262021 | MS.gene71619:CDS | 45.0% |
| !!! | CCTTTTCTGGAGCAAAATGG+AGG | - | chr1.4:82262654-82262673 | MS.gene71619:intron | 45.0% |
| ACAATGAAGAGGGCCTAACG+TGG | - | chr1.4:82262592-82262611 | MS.gene71619:intron | 50.0% | |
| ACGTTAGGCCCTCTTCATTG+TGG | + | chr1.4:82262593-82262612 | None:intergenic | 50.0% | |
| CTACGCAACTTAGGTGCTTC+AGG | + | chr1.4:82262708-82262727 | None:intergenic | 50.0% | |
| GACTTCATGGCTCAGTTCCT+TGG | - | chr1.4:82262030-82262049 | MS.gene71619:CDS | 50.0% | |
| TTGGACAGCTTCCTCAAGCA+TGG | + | chr1.4:82263245-82263264 | None:intergenic | 50.0% | |
| ATGCTCTGTGCATCAGTGGC+AGG | + | chr1.4:82262753-82262772 | None:intergenic | 55.0% | |
| TGTTGGAGCCATGCCACGTT+AGG | + | chr1.4:82262608-82262627 | None:intergenic | 55.0% | |
| GAAGAGGGCCTAACGTGGCA+TGG | - | chr1.4:82262597-82262616 | MS.gene71619:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 82261961 | 82263491 | 82261961 | ID=MS.gene71619 |
| chr1.4 | mRNA | 82261961 | 82263491 | 82261961 | ID=MS.gene71619.t1;Parent=MS.gene71619 |
| chr1.4 | exon | 82263081 | 82263491 | 82263081 | ID=MS.gene71619.t1.exon1;Parent=MS.gene71619.t1 |
| chr1.4 | CDS | 82263081 | 82263491 | 82263081 | ID=cds.MS.gene71619.t1;Parent=MS.gene71619.t1 |
| chr1.4 | exon | 82262670 | 82262915 | 82262670 | ID=MS.gene71619.t1.exon2;Parent=MS.gene71619.t1 |
| chr1.4 | CDS | 82262670 | 82262915 | 82262670 | ID=cds.MS.gene71619.t1;Parent=MS.gene71619.t1 |
| chr1.4 | exon | 82262320 | 82262385 | 82262320 | ID=MS.gene71619.t1.exon3;Parent=MS.gene71619.t1 |
| chr1.4 | CDS | 82262320 | 82262385 | 82262320 | ID=cds.MS.gene71619.t1;Parent=MS.gene71619.t1 |
| chr1.4 | exon | 82262158 | 82262223 | 82262158 | ID=MS.gene71619.t1.exon4;Parent=MS.gene71619.t1 |
| chr1.4 | CDS | 82262158 | 82262223 | 82262158 | ID=cds.MS.gene71619.t1;Parent=MS.gene71619.t1 |
| chr1.4 | exon | 82261961 | 82262065 | 82261961 | ID=MS.gene71619.t1.exon5;Parent=MS.gene71619.t1 |
| chr1.4 | CDS | 82261961 | 82262065 | 82261961 | ID=cds.MS.gene71619.t1;Parent=MS.gene71619.t1 |
| Gene Sequence |
| Protein sequence |
