Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71644.t1 | AES94563.2 | 86 | 50 | 7 | 0 | 9 | 58 | 61 | 110 | 3.30E-14 | 87.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71644.t1 | Q9C9U5 | 78.0 | 50 | 11 | 0 | 11 | 60 | 771 | 820 | 1.1e-15 | 83.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71644.t1 | G7K3U3 | 86.0 | 50 | 7 | 0 | 9 | 58 | 61 | 110 | 2.3e-14 | 87.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71644.t1 | MTR_5g015770 | 82.692 | 52 | 9 | 0 | 8 | 59 | 60 | 111 | 1.43e-25 | 91.7 |
MS.gene71644.t1 | MTR_6g079540 | 74.576 | 59 | 15 | 0 | 2 | 60 | 426 | 484 | 1.79e-23 | 92.4 |
MS.gene71644.t1 | MTR_6g079540 | 74.576 | 59 | 15 | 0 | 2 | 60 | 674 | 732 | 1.81e-23 | 92.4 |
MS.gene71644.t1 | MTR_1g081790 | 75.000 | 52 | 13 | 0 | 11 | 62 | 712 | 763 | 1.35e-20 | 84.3 |
MS.gene71644.t1 | MTR_1g081790 | 75.000 | 52 | 13 | 0 | 11 | 62 | 712 | 763 | 1.36e-20 | 84.3 |
MS.gene71644.t1 | MTR_8g107000 | 76.000 | 50 | 12 | 0 | 11 | 60 | 752 | 801 | 1.67e-20 | 84.0 |
MS.gene71644.t1 | MTR_1g016300 | 63.793 | 58 | 20 | 1 | 4 | 60 | 678 | 735 | 1.37e-19 | 81.3 |
MS.gene71644.t1 | MTR_1g016300 | 63.793 | 58 | 20 | 1 | 4 | 60 | 678 | 735 | 1.37e-19 | 81.3 |
MS.gene71644.t1 | MTR_2g092980 | 47.458 | 59 | 31 | 0 | 2 | 60 | 535 | 593 | 1.08e-15 | 70.5 |
MS.gene71644.t1 | MTR_2g092980 | 47.458 | 59 | 31 | 0 | 2 | 60 | 516 | 574 | 1.09e-15 | 70.1 |
MS.gene71644.t1 | MTR_2g092980 | 47.458 | 59 | 31 | 0 | 2 | 60 | 571 | 629 | 1.24e-15 | 70.1 |
MS.gene71644.t1 | MTR_2g092980 | 47.458 | 59 | 31 | 0 | 2 | 60 | 552 | 610 | 1.25e-15 | 70.1 |
MS.gene71644.t1 | MTR_4g080030 | 47.458 | 59 | 31 | 0 | 2 | 60 | 561 | 619 | 1.40e-15 | 70.1 |
MS.gene71644.t1 | MTR_1g061190 | 56.000 | 50 | 22 | 0 | 11 | 60 | 578 | 627 | 1.96e-14 | 66.6 |
MS.gene71644.t1 | MTR_2g034020 | 50.847 | 59 | 29 | 0 | 2 | 60 | 480 | 538 | 2.64e-14 | 66.2 |
MS.gene71644.t1 | MTR_4g122160 | 52.542 | 59 | 28 | 0 | 2 | 60 | 474 | 532 | 6.88e-14 | 65.1 |
MS.gene71644.t1 | MTR_4g122160 | 52.542 | 59 | 28 | 0 | 2 | 60 | 474 | 532 | 6.92e-14 | 65.1 |
MS.gene71644.t1 | MTR_5g023150 | 45.763 | 59 | 32 | 0 | 2 | 60 | 212 | 270 | 2.95e-13 | 63.2 |
MS.gene71644.t1 | MTR_5g023150 | 45.763 | 59 | 32 | 0 | 2 | 60 | 309 | 367 | 2.98e-13 | 63.2 |
MS.gene71644.t1 | MTR_3g100090 | 58.000 | 50 | 21 | 0 | 11 | 60 | 676 | 725 | 1.51e-12 | 61.2 |
MS.gene71644.t1 | MTR_1g113960 | 42.373 | 59 | 34 | 0 | 2 | 60 | 315 | 373 | 9.09e-12 | 59.3 |
MS.gene71644.t1 | MTR_1g113960 | 42.373 | 59 | 34 | 0 | 2 | 60 | 315 | 373 | 9.16e-12 | 58.9 |
MS.gene71644.t1 | MTR_1g050690 | 54.000 | 50 | 23 | 0 | 11 | 60 | 440 | 489 | 4.04e-11 | 57.4 |
MS.gene71644.t1 | MTR_5g066490 | 46.667 | 60 | 32 | 0 | 1 | 60 | 659 | 718 | 4.13e-11 | 57.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71644.t1 | AT1G73660 | 78.000 | 50 | 11 | 0 | 11 | 60 | 771 | 820 | 3.92e-22 | 88.6 |
MS.gene71644.t1 | AT1G18160 | 77.551 | 49 | 11 | 0 | 12 | 60 | 739 | 787 | 2.63e-21 | 86.3 |
MS.gene71644.t1 | AT1G18160 | 77.551 | 49 | 11 | 0 | 12 | 60 | 739 | 787 | 2.64e-21 | 86.3 |
MS.gene71644.t1 | AT1G08720 | 64.407 | 59 | 21 | 0 | 2 | 60 | 683 | 741 | 5.33e-20 | 82.4 |
MS.gene71644.t1 | AT1G08720 | 64.407 | 59 | 21 | 0 | 2 | 60 | 683 | 741 | 5.33e-20 | 82.4 |
MS.gene71644.t1 | AT5G11850 | 62.712 | 59 | 22 | 0 | 2 | 60 | 623 | 681 | 4.16e-19 | 80.1 |
MS.gene71644.t1 | AT5G03730 | 60.000 | 50 | 20 | 0 | 11 | 60 | 574 | 623 | 4.27e-16 | 71.6 |
MS.gene71644.t1 | AT5G03730 | 60.000 | 50 | 20 | 0 | 11 | 60 | 574 | 623 | 4.27e-16 | 71.6 |
MS.gene71644.t1 | AT3G58640 | 49.153 | 59 | 30 | 0 | 2 | 60 | 567 | 625 | 5.09e-16 | 71.2 |
MS.gene71644.t1 | AT3G58640 | 49.153 | 59 | 30 | 0 | 2 | 60 | 567 | 625 | 5.09e-16 | 71.2 |
MS.gene71644.t1 | AT3G06620 | 55.738 | 61 | 27 | 0 | 2 | 62 | 508 | 568 | 7.28e-16 | 70.9 |
MS.gene71644.t1 | AT2G31010 | 47.458 | 59 | 31 | 0 | 2 | 60 | 533 | 591 | 4.46e-15 | 68.6 |
MS.gene71644.t1 | AT2G31010 | 47.458 | 59 | 31 | 0 | 2 | 60 | 533 | 591 | 4.46e-15 | 68.6 |
MS.gene71644.t1 | AT5G49470 | 54.237 | 59 | 27 | 0 | 2 | 60 | 218 | 276 | 3.31e-14 | 66.2 |
MS.gene71644.t1 | AT5G49470 | 54.237 | 59 | 27 | 0 | 2 | 60 | 378 | 436 | 3.37e-14 | 66.2 |
MS.gene71644.t1 | AT5G49470 | 54.237 | 59 | 27 | 0 | 2 | 60 | 505 | 563 | 3.38e-14 | 66.2 |
MS.gene71644.t1 | AT5G49470 | 54.237 | 59 | 27 | 0 | 2 | 60 | 505 | 563 | 3.38e-14 | 66.2 |
MS.gene71644.t1 | AT5G49470 | 54.237 | 59 | 27 | 0 | 2 | 60 | 479 | 537 | 3.39e-14 | 66.2 |
MS.gene71644.t1 | AT5G49470 | 54.237 | 59 | 27 | 0 | 2 | 60 | 505 | 563 | 3.39e-14 | 66.2 |
MS.gene71644.t1 | AT5G49470 | 54.237 | 59 | 27 | 0 | 2 | 60 | 502 | 560 | 3.40e-14 | 66.2 |
MS.gene71644.t1 | AT3G06630 | 48.611 | 72 | 33 | 1 | 2 | 73 | 364 | 431 | 4.70e-14 | 65.9 |
MS.gene71644.t1 | AT3G06630 | 48.611 | 72 | 33 | 1 | 2 | 73 | 448 | 515 | 4.73e-14 | 65.9 |
MS.gene71644.t1 | AT3G06630 | 48.611 | 72 | 33 | 1 | 2 | 73 | 448 | 515 | 4.74e-14 | 65.9 |
MS.gene71644.t1 | AT3G06630 | 48.611 | 72 | 33 | 1 | 2 | 73 | 448 | 515 | 4.74e-14 | 65.9 |
MS.gene71644.t1 | AT3G06630 | 48.611 | 72 | 33 | 1 | 2 | 73 | 448 | 515 | 4.74e-14 | 65.9 |
MS.gene71644.t1 | AT3G06630 | 48.611 | 72 | 33 | 1 | 2 | 73 | 448 | 515 | 4.75e-14 | 65.9 |
MS.gene71644.t1 | AT3G06630 | 48.611 | 72 | 33 | 1 | 2 | 73 | 448 | 515 | 4.75e-14 | 65.9 |
MS.gene71644.t1 | AT1G67890 | 52.542 | 59 | 28 | 0 | 2 | 60 | 373 | 431 | 1.45e-13 | 64.3 |
MS.gene71644.t1 | AT1G67890 | 52.542 | 59 | 28 | 0 | 2 | 60 | 501 | 559 | 1.46e-13 | 64.3 |
MS.gene71644.t1 | AT1G67890 | 52.542 | 59 | 28 | 0 | 2 | 60 | 501 | 559 | 1.46e-13 | 64.3 |
MS.gene71644.t1 | AT1G67890 | 52.542 | 59 | 28 | 0 | 2 | 60 | 501 | 559 | 1.47e-13 | 64.3 |
MS.gene71644.t1 | AT3G06640 | 50.820 | 61 | 30 | 0 | 2 | 62 | 460 | 520 | 2.00e-13 | 63.9 |
MS.gene71644.t1 | AT3G06640 | 50.820 | 61 | 30 | 0 | 2 | 62 | 460 | 520 | 2.00e-13 | 63.9 |
MS.gene71644.t1 | AT3G06640 | 50.820 | 61 | 30 | 0 | 2 | 62 | 460 | 520 | 2.00e-13 | 63.9 |
MS.gene71644.t1 | AT4G35780 | 44.068 | 59 | 33 | 0 | 2 | 60 | 306 | 364 | 5.61e-12 | 59.7 |
MS.gene71644.t1 | AT2G42640 | 48.000 | 50 | 26 | 0 | 11 | 60 | 513 | 562 | 6.09e-12 | 59.7 |
MS.gene71644.t1 | AT2G42640 | 48.000 | 50 | 26 | 0 | 11 | 60 | 551 | 600 | 6.16e-12 | 59.7 |
MS.gene71644.t1 | AT2G42640 | 47.059 | 51 | 27 | 0 | 10 | 60 | 550 | 600 | 1.54e-11 | 58.5 |
Find 16 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAAAGTCTTGTAACCAAATT+TGG | 0.143545 | 1.4:+82540184 | None:intergenic |
GATAGTGTCTTTCAAGTTTC+AGG | 0.198970 | 1.4:-82540072 | MS.gene71644:intron |
TGTAACTCGACCTCCAAATT+TGG | 0.224850 | 1.4:-82540197 | MS.gene71644:intron |
TCCAAATGTGGTTCTCTTCA+TGG | 0.369032 | 1.4:-82540224 | MS.gene71644:CDS |
CCCATGAAGAGAACCACATT+TGG | 0.424463 | 1.4:+82540223 | None:intergenic |
TATGCTAAGGAGGTTCCATT+TGG | 0.455618 | 1.4:-82540049 | MS.gene71644:CDS |
TTGTAGGAAGTTGCTGTCAA+AGG | 0.489329 | 1.4:-82540578 | MS.gene71644:intron |
TGTACTTCTTGTGAACCAAA+TGG | 0.494850 | 1.4:+82540034 | None:intergenic |
TGTAGGAAGTTGCTGTCAAA+GGG | 0.496653 | 1.4:-82540577 | MS.gene71644:intron |
TTCAAGTTTCAGGTATGCTA+AGG | 0.497163 | 1.4:-82540062 | MS.gene71644:CDS |
CCAAATGTGGTTCTCTTCAT+GGG | 0.522890 | 1.4:-82540223 | MS.gene71644:CDS |
AAGTTTCAGGTATGCTAAGG+AGG | 0.550844 | 1.4:-82540059 | MS.gene71644:CDS |
AGTCTTGTAACCAAATTTGG+AGG | 0.555282 | 1.4:+82540187 | None:intergenic |
TCAGAGTAATGAAAAGATTG+AGG | 0.577619 | 1.4:-82540249 | MS.gene71644:CDS |
AAGATTGAGGCATCCAAATG+TGG | 0.615715 | 1.4:-82540236 | MS.gene71644:CDS |
AGATCAAGATATATCTTGTG+AGG | 0.645520 | 1.4:-82540549 | MS.gene71644:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ACATTTTTTTTTTTTTTTGA+AGG | + | chr1.4:82540930-82540949 | None:intergenic | 10.0% |
!! | CTACTGTTATATATTTAAAT+AGG | + | chr1.4:82540859-82540878 | None:intergenic | 15.0% |
!! | TATATATACCAAAAAACTTA+CGG | - | chr1.4:82541510-82541529 | MS.gene71644:intron | 15.0% |
!! | AAACTAAAGCTCATAATTAT+CGG | + | chr1.4:82540978-82540997 | None:intergenic | 20.0% |
!! | ATATGGTTTAATCTTCAATA+AGG | - | chr1.4:82540407-82540426 | MS.gene71644:intron | 20.0% |
!!! | AAATTGTTTCACATTTGTTA+TGG | - | chr1.4:82541704-82541723 | MS.gene71644:intron | 20.0% |
!!! | AATTACATTTAGAACATGTT+TGG | + | chr1.4:82540901-82540920 | None:intergenic | 20.0% |
!!! | ATGTTCTTTACTTTTCAATA+TGG | - | chr1.4:82540390-82540409 | MS.gene71644:intron | 20.0% |
!!! | ATTAAATACCGTAAGTTTTT+TGG | + | chr1.4:82541521-82541540 | None:intergenic | 20.0% |
!!! | ATTTATCTTTTAATTGCAGA+TGG | - | chr1.4:82540475-82540494 | MS.gene71644:intron | 20.0% |
!!! | TGATAAACTTAATTTGAATC+TGG | - | chr1.4:82540118-82540137 | MS.gene71644:intron | 20.0% |
!!! | TTTGAGAAAATGAATTTTCA+TGG | - | chr1.4:82540172-82540191 | MS.gene71644:intron | 20.0% |
! | AAAATTCATAAGTGAGGTAT+AGG | - | chr1.4:82541281-82541300 | MS.gene71644:intron | 25.0% |
! | AATTCAGTCTATAACAACAA+TGG | - | chr1.4:82540585-82540604 | MS.gene71644:intron | 25.0% |
! | AATTGCCCCAAAATAAAAAA+AGG | + | chr1.4:82541152-82541171 | None:intergenic | 25.0% |
! | ACCATACAACAAAAATTTGT+AGG | + | chr1.4:82541076-82541095 | None:intergenic | 25.0% |
! | ACTTGAAAAATTCATAAGTG+AGG | - | chr1.4:82541275-82541294 | MS.gene71644:intron | 25.0% |
! | AGACTTTATTATTAGAGACT+AGG | - | chr1.4:82540337-82540356 | MS.gene71644:intron | 25.0% |
! | AGACTTTATTATTAGTGACT+AGG | - | chr1.4:82541631-82541650 | MS.gene71644:intron | 25.0% |
! | ATTCAGTCTATAACAACAAT+GGG | - | chr1.4:82540586-82540605 | MS.gene71644:intron | 25.0% |
! | ATTGCCCCAAAATAAAAAAA+GGG | + | chr1.4:82541151-82541170 | None:intergenic | 25.0% |
! | TAAGTTCATGTATATCTCTA+TGG | - | chr1.4:82541413-82541432 | MS.gene71644:intron | 25.0% |
! | TACGGTATTTAATTGCAAAT+AGG | - | chr1.4:82541528-82541547 | MS.gene71644:intron | 25.0% |
! | TTCACAACAAAGTTATTCTT+TGG | - | chr1.4:82541198-82541217 | MS.gene71644:intron | 25.0% |
!! | CATGGATTTAGTACTAATTT+TGG | - | chr1.4:82540190-82540209 | MS.gene71644:intron | 25.0% |
!! | TAAAGTCTTGTAACCAAATT+TGG | + | chr1.4:82541619-82541638 | None:intergenic | 25.0% |
!! | TATAAGGTTCTTTTCTACAA+AGG | - | chr1.4:82540746-82540765 | MS.gene71644:intron | 25.0% |
!! | TATACGATTGCTTCTATTTT+TGG | - | chr1.4:82540094-82540113 | MS.gene71644:intron | 25.0% |
!!! | AAAGTTATTCTTTGGTTTGT+AGG | - | chr1.4:82541206-82541225 | MS.gene71644:intron | 25.0% |
!!! | ACAAATTTTTGTTGTATGGT+GGG | - | chr1.4:82541076-82541095 | MS.gene71644:intron | 25.0% |
!!! | ACCTACAAATTTTTGTTGTA+TGG | - | chr1.4:82541072-82541091 | MS.gene71644:intron | 25.0% |
!!! | TACAAATTTTTGTTGTATGG+TGG | - | chr1.4:82541075-82541094 | MS.gene71644:intron | 25.0% |
!!! | TTTTTAGTTTGTGATGCATA+TGG | - | chr1.4:82540269-82540288 | MS.gene71644:intron | 25.0% |
AGATCAAGATATATCTTGTG+AGG | - | chr1.4:82541251-82541270 | MS.gene71644:intron | 30.0% | |
CTCACTATTCTCATCTAATA+TGG | - | chr1.4:82540806-82540825 | MS.gene71644:intron | 30.0% | |
GAATGCAATCATCTACAATA+AGG | + | chr1.4:82541181-82541200 | None:intergenic | 30.0% | |
GAATTAAAAGAGAAGCAGTT+AGG | + | chr1.4:82540782-82540801 | None:intergenic | 30.0% | |
GATTATAGAGCAATCATTTG+TGG | - | chr1.4:82541383-82541402 | MS.gene71644:intron | 30.0% | |
GTAGAGGTAATATCGATATA+AGG | - | chr1.4:82540730-82540749 | MS.gene71644:intron | 30.0% | |
GTGTTGAAAAAGAAATACAG+TGG | + | chr1.4:82541359-82541378 | None:intergenic | 30.0% | |
TCAGAGTAATGAAAAGATTG+AGG | - | chr1.4:82541551-82541570 | MS.gene71644:intron | 30.0% | |
TGTTCATTGTTCTTCATCTA+AGG | + | chr1.4:82540559-82540578 | None:intergenic | 30.0% | |
TTGCCCCAAAATAAAAAAAG+GGG | + | chr1.4:82541150-82541169 | None:intergenic | 30.0% | |
TTTAATTGCAGATGGTACAA+AGG | - | chr1.4:82540483-82540502 | MS.gene71644:intron | 30.0% | |
! | CATTTAGAACATGTTTGGAT+AGG | + | chr1.4:82540896-82540915 | None:intergenic | 30.0% |
! | TGACTAGGTTAACCTTTTTA+CGG | - | chr1.4:82541646-82541665 | MS.gene71644:intron | 30.0% |
!!! | AGTTGGAGGATTTTTAAAGT+TGG | - | chr1.4:82540509-82540528 | MS.gene71644:intron | 30.0% |
!!! | GTTGCCCCTTTTTTTATTTT+GGG | - | chr1.4:82541143-82541162 | MS.gene71644:intron | 30.0% |
!!! | GTTGGAGGATTTTTAAAGTT+GGG | - | chr1.4:82540510-82540529 | MS.gene71644:intron | 30.0% |
!!! | TTGCCCCTTTTTTTATTTTG+GGG | - | chr1.4:82541144-82541163 | MS.gene71644:intron | 30.0% |
AAATAAAAAAAGGGGCAACC+CGG | + | chr1.4:82541142-82541161 | None:intergenic | 35.0% | |
ACACATACACATAGTGAAAG+AGG | + | chr1.4:82541315-82541334 | None:intergenic | 35.0% | |
AGTCTATAACAACAATGGGT+TGG | - | chr1.4:82540590-82540609 | MS.gene71644:intron | 35.0% | |
AGTTTGTGATGCATATGGTT+TGG | - | chr1.4:82540274-82540293 | MS.gene71644:intron | 35.0% | |
CAAAAGAGAACTCCGTAAAA+AGG | + | chr1.4:82541661-82541680 | None:intergenic | 35.0% | |
CAGTAGCATAATCAAGACAT+TGG | + | chr1.4:82541445-82541464 | None:intergenic | 35.0% | |
CTACTGCTACATTTAGATGA+TGG | - | chr1.4:82541459-82541478 | MS.gene71644:intron | 35.0% | |
CTGAGAATTCAGTCTATAAC+AGG | - | chr1.4:82540643-82540662 | MS.gene71644:intron | 35.0% | |
TGTACTTCTTGTGAACCAAA+TGG | + | chr1.4:82541769-82541788 | None:intergenic | 35.0% | |
! | AGTCTTGTAACCAAATTTGG+AGG | + | chr1.4:82541616-82541635 | None:intergenic | 35.0% |
! | GTCTTCTTGAAAAAGTGTAG+AGG | - | chr1.4:82540714-82540733 | MS.gene71644:intron | 35.0% |
! | TGATGCATATGGTTTGGATT+TGG | - | chr1.4:82540280-82540299 | MS.gene71644:intron | 35.0% |
! | TTCAAGTTTCAGGTATGCTA+AGG | - | chr1.4:82541738-82541757 | MS.gene71644:intron | 35.0% |
! | TTTGGAATCTGCTTGTCATT+TGG | - | chr1.4:82540208-82540227 | MS.gene71644:CDS | 35.0% |
!! | GATAGTGTCTTTCAAGTTTC+AGG | - | chr1.4:82541728-82541747 | MS.gene71644:intron | 35.0% |
!!! | GGTTGCCCCTTTTTTTATTT+TGG | - | chr1.4:82541142-82541161 | MS.gene71644:intron | 35.0% |
AGATGGTACAAAGGATGAGT+TGG | - | chr1.4:82540492-82540511 | MS.gene71644:intron | 40.0% | |
ATGAACAACAAGAGGAAGAG+TGG | - | chr1.4:82540670-82540689 | MS.gene71644:intron | 40.0% | |
CCAAATGTGGTTCTCTTCAT+GGG | - | chr1.4:82541577-82541596 | MS.gene71644:intron | 40.0% | |
CTCTTTCTACACTTGATGCT+CGG | + | chr1.4:82540434-82540453 | None:intergenic | 40.0% | |
GACTAGGTTAACATCTGACA+AGG | - | chr1.4:82540353-82540372 | MS.gene71644:intron | 40.0% | |
TATGCTAAGGAGGTTCCATT+TGG | - | chr1.4:82541751-82541770 | MS.gene71644:intron | 40.0% | |
TCCAAATGTGGTTCTCTTCA+TGG | - | chr1.4:82541576-82541595 | MS.gene71644:intron | 40.0% | |
TGTAACTCGACCTCCAAATT+TGG | - | chr1.4:82541603-82541622 | MS.gene71644:intron | 40.0% | |
TGTAGGAAGTTGCTGTCAAA+GGG | - | chr1.4:82541223-82541242 | MS.gene71644:intron | 40.0% | |
TTGTAGGAAGTTGCTGTCAA+AGG | - | chr1.4:82541222-82541241 | MS.gene71644:intron | 40.0% | |
! | AAGATTGAGGCATCCAAATG+TGG | - | chr1.4:82541564-82541583 | MS.gene71644:intron | 40.0% |
! | AAGTTTCAGGTATGCTAAGG+AGG | - | chr1.4:82541741-82541760 | MS.gene71644:intron | 40.0% |
!! | CTATAACAACAATGGGTTGG+AGG | - | chr1.4:82540593-82540612 | MS.gene71644:intron | 40.0% |
!! | CTCTTCCTCTTGTTGTTCAT+TGG | + | chr1.4:82540670-82540689 | None:intergenic | 40.0% |
AGACTTCTTCCCACTACTTG+AGG | + | chr1.4:82540698-82540717 | None:intergenic | 45.0% | |
CAGGACCAATGAACAACAAG+AGG | - | chr1.4:82540662-82540681 | MS.gene71644:intron | 45.0% | |
CCCATGAAGAGAACCACATT+TGG | + | chr1.4:82541580-82541599 | None:intergenic | 45.0% | |
! | TGGTACAAAGGATGAGTTGG+AGG | - | chr1.4:82540495-82540514 | MS.gene71644:intron | 45.0% |
AAGAGTGGAGCCTCAAGTAG+TGG | - | chr1.4:82540685-82540704 | MS.gene71644:intron | 50.0% | |
AGAGTGGAGCCTCAAGTAGT+GGG | - | chr1.4:82540686-82540705 | MS.gene71644:intron | 50.0% | |
ACTAGAGCTCCCGCATATGC+AGG | + | chr1.4:82541116-82541135 | None:intergenic | 55.0% | |
CATATGCAGGGTCTGGGAAG+GGG | + | chr1.4:82541103-82541122 | None:intergenic | 55.0% | |
CTAGAGCTCCCGCATATGCA+GGG | + | chr1.4:82541115-82541134 | None:intergenic | 55.0% | |
CTTCCCAGACCCTGCATATG+CGG | - | chr1.4:82541103-82541122 | MS.gene71644:intron | 55.0% | |
GCATATGCAGGGTCTGGGAA+GGG | + | chr1.4:82541104-82541123 | None:intergenic | 55.0% | |
TTCCCAGACCCTGCATATGC+GGG | - | chr1.4:82541104-82541123 | MS.gene71644:intron | 55.0% | |
CGCATATGCAGGGTCTGGGA+AGG | + | chr1.4:82541105-82541124 | None:intergenic | 60.0% | |
CTCCCGCATATGCAGGGTCT+GGG | + | chr1.4:82541109-82541128 | None:intergenic | 60.0% | |
! | ATGCGGGAGCTCTAGTGCAC+CGG | - | chr1.4:82541120-82541139 | MS.gene71644:intron | 60.0% |
GCTCCCGCATATGCAGGGTC+TGG | + | chr1.4:82541110-82541129 | None:intergenic | 65.0% | |
! | TGCGGGAGCTCTAGTGCACC+GGG | - | chr1.4:82541121-82541140 | MS.gene71644:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 82540018 | 82541804 | 82540018 | ID=MS.gene71644 |
chr1.4 | mRNA | 82540018 | 82541804 | 82540018 | ID=MS.gene71644.t1;Parent=MS.gene71644 |
chr1.4 | exon | 82541775 | 82541804 | 82541775 | ID=MS.gene71644.t1.exon1;Parent=MS.gene71644.t1 |
chr1.4 | CDS | 82541775 | 82541804 | 82541775 | ID=cds.MS.gene71644.t1;Parent=MS.gene71644.t1 |
chr1.4 | exon | 82540526 | 82540594 | 82540526 | ID=MS.gene71644.t1.exon2;Parent=MS.gene71644.t1 |
chr1.4 | CDS | 82540526 | 82540594 | 82540526 | ID=cds.MS.gene71644.t1;Parent=MS.gene71644.t1 |
chr1.4 | exon | 82540198 | 82540272 | 82540198 | ID=MS.gene71644.t1.exon3;Parent=MS.gene71644.t1 |
chr1.4 | CDS | 82540198 | 82540272 | 82540198 | ID=cds.MS.gene71644.t1;Parent=MS.gene71644.t1 |
chr1.4 | exon | 82540018 | 82540089 | 82540018 | ID=MS.gene71644.t1.exon4;Parent=MS.gene71644.t1 |
chr1.4 | CDS | 82540018 | 82540089 | 82540018 | ID=cds.MS.gene71644.t1;Parent=MS.gene71644.t1 |
Gene Sequence |
Protein sequence |