AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71745

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71745.t1 MTR_1g108780 96.000 450 18 0 33 482 12 461 0.0 912
MS.gene71745.t1 MTR_8g103940 70.208 480 134 6 1 480 26 496 0.0 687
MS.gene71745.t1 MTR_1g035460 46.552 406 193 11 34 427 2 395 3.50e-106 322
MS.gene71745.t1 MTR_3g098790 35.691 311 169 7 13 311 8 299 3.73e-54 184
MS.gene71745.t1 MTR_7g050710 35.873 315 165 10 16 311 11 307 5.79e-54 184
MS.gene71745.t1 MTR_7g050720 35.938 320 165 12 18 311 10 315 6.00e-52 179
MS.gene71745.t1 MTR_7g050590 36.149 296 154 11 34 311 2 280 2.34e-49 171
MS.gene71745.t1 MTR_7g050580 34.494 316 147 9 18 311 13 290 2.59e-49 171
MS.gene71745.t1 MTR_7g050580 23.473 311 152 11 222 479 13 290 2.63e-11 65.1
MS.gene71745.t1 MTR_7g050560 32.915 319 164 8 10 311 5 290 3.66e-49 171
MS.gene71745.t1 MTR_3g061370 33.439 314 157 8 13 310 4 281 8.53e-48 166
MS.gene71745.t1 MTR_3g061350 33.654 312 153 10 16 310 10 284 1.28e-45 160
MS.gene71745.t1 MTR_3g061340 32.573 307 161 10 12 310 6 274 2.49e-45 159
MS.gene71745.t1 MTR_3g061340 34.884 129 76 4 351 478 153 274 6.24e-13 69.3
MS.gene71745.t1 MTR_5g044670 30.178 338 185 11 3 318 2 310 2.62e-44 159
MS.gene71745.t1 MTR_3g061310 32.258 310 161 9 16 310 10 285 7.90e-44 156
MS.gene71745.t1 MTR_3g061310 29.927 274 153 11 234 478 22 285 1.42e-16 80.5
MS.gene71745.t1 MTR_3g061320 31.613 310 157 10 16 310 10 279 6.08e-42 150
MS.gene71745.t1 MTR_3g061320 35.965 114 68 3 366 478 170 279 9.01e-12 66.2
MS.gene71745.t1 MTR_3g061330 31.769 277 139 8 16 277 10 251 2.35e-38 140
MS.gene71745.t1 MTR_6g061070 25.397 504 316 14 1 478 1 470 1.07e-33 132
MS.gene71745.t1 MTR_3g061290 40.667 150 80 2 16 158 10 157 1.84e-32 123
MS.gene71745.t1 MTR_4g119990 27.500 320 202 11 13 315 10 316 2.16e-31 124
MS.gene71745.t1 MTR_1g035570 31.046 306 166 10 27 315 14 291 2.06e-30 122
MS.gene71745.t1 MTR_6g043890 26.263 297 200 8 14 302 11 296 1.87e-29 118
MS.gene71745.t1 MTR_1g035620 25.105 474 271 19 18 479 9 410 2.77e-28 116
MS.gene71745.t1 MTR_3g005420 27.273 319 166 11 6 312 273 537 2.19e-27 115
MS.gene71745.t1 MTR_3g005420 31.000 100 68 1 18 116 40 139 5.16e-11 65.1
MS.gene71745.t1 MTR_5g070440 26.144 306 158 9 18 312 21 269 1.24e-26 108
MS.gene71745.t1 MTR_7g050640 45.833 96 52 0 16 111 11 106 4.31e-26 102
MS.gene71745.t1 MTR_1g035640 27.729 339 198 12 27 355 14 315 2.28e-25 108
MS.gene71745.t1 MTR_3g005480 25.329 304 155 8 18 312 21 261 1.64e-24 102
MS.gene71745.t1 MTR_3g061220 39.024 123 54 3 16 132 10 117 2.49e-21 89.7
MS.gene71745.t1 MTR_1g021400 25.378 331 197 12 23 315 36 354 3.64e-20 92.4
MS.gene71745.t1 MTR_3g005460 24.204 314 168 8 15 312 259 518 3.85e-20 93.6
MS.gene71745.t1 MTR_3g005460 22.027 513 327 17 18 478 25 516 8.83e-20 92.4
MS.gene71745.t1 MTR_1g021330 25.905 359 213 13 16 329 24 374 1.16e-19 91.3
MS.gene71745.t1 MTR_4g068320 37.963 108 67 0 18 125 6 113 2.37e-19 90.5
MS.gene71745.t1 MTR_4g068320 38.931 131 72 4 199 322 270 399 2.79e-18 87.4
MS.gene71745.t1 MTR_1g035520 24.917 301 195 8 34 309 88 382 2.44e-19 90.1
MS.gene71745.t1 MTR_1g035490 25.952 289 170 9 202 482 79 331 5.72e-19 88.2
MS.gene71745.t1 MTR_1g021435 25.074 339 200 13 23 315 28 358 1.50e-18 87.4
MS.gene71745.t1 MTR_1g050845 25.424 295 179 7 18 309 9 265 1.81e-18 89.0
MS.gene71745.t1 MTR_1g021360 25.887 282 176 8 32 299 196 458 1.35e-17 85.5
MS.gene71745.t1 MTR_1g034240 35.036 137 74 3 18 139 7 143 4.24e-17 84.0
MS.gene71745.t1 MTR_1g034240 36.434 129 72 5 199 319 274 400 2.29e-15 78.6
MS.gene71745.t1 MTR_3g005490 26.966 178 114 3 18 179 21 198 6.86e-17 80.9
MS.gene71745.t1 MTR_1g021380 22.687 335 204 11 16 315 20 334 7.57e-17 82.4
MS.gene71745.t1 MTR_1g098450 26.647 334 192 16 8 325 2 298 2.17e-16 80.5
MS.gene71745.t1 MTR_1g035650 35.000 100 63 1 17 116 8 105 8.14e-16 76.6
MS.gene71745.t1 MTR_1g033740 34.746 118 74 2 13 130 17 131 1.15e-15 75.9
MS.gene71745.t1 MTR_3g005495 25.685 292 141 9 18 302 243 465 4.44e-15 77.8
MS.gene71745.t1 MTR_3g005495 33.333 84 56 0 33 116 28 111 2.55e-12 69.3
MS.gene71745.t1 MTR_3g061300 37.288 118 69 3 366 482 14 127 5.10e-15 72.0
MS.gene71745.t1 MTR_1g034210 34.746 118 68 4 209 319 251 366 2.87e-14 74.7
MS.gene71745.t1 MTR_1g034210 35.354 99 62 1 18 116 7 103 3.95e-12 68.2
MS.gene71745.t1 MTR_1g035500 33.898 118 75 2 13 130 20 134 3.52e-14 71.2
MS.gene71745.t1 MTR_1g035480 33.613 119 76 2 12 130 11 126 3.85e-14 71.2
MS.gene71745.t1 MTR_1g035440 33.010 103 68 1 15 116 12 114 2.69e-13 70.1
MS.gene71745.t1 MTR_1g035470 42.169 83 45 2 34 116 2 81 1.10e-12 65.9
MS.gene71745.t1 MTR_1g021290 33.333 129 72 3 19 134 157 284 2.11e-12 68.6
MS.gene71745.t1 MTR_1g034210 35.354 99 62 1 18 116 7 103 2.84e-12 68.2
MS.gene71745.t1 MTR_3g005440 29.221 154 100 3 10 159 230 378 3.34e-11 65.5
MS.gene71745.t1 MTR_3g005440 31.765 85 58 0 32 116 34 118 3.37e-11 65.5
MS.gene71745.t1 MTR_3g005420 31.000 100 68 1 18 116 21 120 4.90e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71745.t1 AT3G18990 32.344 337 185 11 18 314 6 339 5.68e-43 155
MS.gene71745.t1 AT3G18990 32.047 337 186 11 18 314 6 339 3.88e-42 154
MS.gene71745.t1 AT1G49480 31.977 172 88 7 169 314 56 224 2.48e-17 81.6
MS.gene71745.t1 AT1G49480 35.897 117 66 4 368 479 109 221 5.36e-11 62.8
MS.gene71745.t1 AT1G49480 31.977 172 88 7 169 314 56 224 2.48e-17 81.6
MS.gene71745.t1 AT1G49480 35.897 117 66 4 368 479 109 221 5.36e-11 62.8
MS.gene71745.t1 AT1G49480 31.977 172 88 7 169 314 56 224 2.48e-17 81.6
MS.gene71745.t1 AT1G49480 35.897 117 66 4 368 479 109 221 5.36e-11 62.8
MS.gene71745.t1 AT4G01580 36.538 104 66 0 17 120 29 132 9.70e-17 79.0
MS.gene71745.t1 AT4G33280 26.667 300 197 10 32 318 37 326 2.71e-16 80.5
MS.gene71745.t1 AT3G18960 34.615 104 68 0 17 120 29 132 6.02e-16 76.6
MS.gene71745.t1 AT3G18960 34.615 104 68 0 17 120 29 132 9.85e-16 76.3
MS.gene71745.t1 AT1G49475 31.667 120 77 2 17 136 33 147 2.02e-14 72.0
MS.gene71745.t1 AT3G18960 35.227 88 57 0 33 120 8 95 1.72e-11 63.2

Find 78 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACAATCCAATTGAAATTT+TGG 0.104888 1.1:+77707432 MS.gene71745:CDS
CCTAAACTTGTCCAAGTTAA+AGG 0.118978 1.1:+77707577 MS.gene71745:CDS
ATCTGATAATAATTTGAAAT+TGG 0.143719 1.1:+77708128 MS.gene71745:CDS
CTCAAATTGATAGTGAAATT+TGG 0.167485 1.1:-77708802 None:intergenic
GAACTTGAAATTTGTGATTT+TGG 0.194976 1.1:-77707484 None:intergenic
GTGAGACTGTACATATTCTT+AGG 0.199034 1.1:-77706725 None:intergenic
GGAAATACATTTGACTAAAA+AGG 0.231817 1.1:+77707234 MS.gene71745:CDS
CTTGACCATGCTTCACATTC+AGG 0.239372 1.1:-77707730 None:intergenic
TATCATGACAGCAGTGAAAA+AGG 0.253877 1.1:-77707822 None:intergenic
CCTTCACCCAACTTTGTTGC+TGG 0.270614 1.1:-77709094 None:intergenic
CCTTTAACTTGGACAAGTTT+AGG 0.279816 1.1:-77707577 None:intergenic
TGCTATTGATCATCTCAAAA+AGG 0.283820 1.1:-77708161 None:intergenic
ACCCAACTTTGTTGCTGGTT+CGG 0.316172 1.1:-77709089 None:intergenic
CGAAATCGCCCTTCAGGTCT+TGG 0.340066 1.1:+77708038 MS.gene71745:CDS
TCAATTTGAGATCAAGTCAT+TGG 0.345291 1.1:+77708815 MS.gene71745:CDS
TGCTCATCCAAAATTTCAAT+TGG 0.347442 1.1:-77707439 None:intergenic
TATTTCTCAGTGAAAGCATT+TGG 0.349857 1.1:-77707157 None:intergenic
TCTGATAATAATTTGAAATT+GGG 0.355411 1.1:+77708129 MS.gene71745:CDS
GTACATATTCTTAGGGTTGC+TGG 0.358212 1.1:-77706717 None:intergenic
GACTGCAATGTTACAGTTTG+AGG 0.362858 1.1:+77709030 MS.gene71745:CDS
TTCATTCTCGAGCAAGTACT+TGG 0.373540 1.1:+77708994 MS.gene71745:CDS
AAAACTATTATGTCGTATAA+AGG 0.388718 1.1:+77708393 MS.gene71745:CDS
GCAAAGCGAAATCGCCCTTC+AGG 0.399129 1.1:+77708032 MS.gene71745:CDS
GAAATTGAATATCGTGTTGA+CGG 0.403003 1.1:+77707391 MS.gene71745:CDS
TGTAGAAGAAAATAAATTGC+AGG 0.404615 1.1:+77709129 MS.gene71745:CDS
AAGCACAACATCTTCCTTGT+TGG 0.409928 1.1:-77709179 None:intergenic
CAAAGTGGATGTGAATTGAT+TGG 0.417163 1.1:-77708773 None:intergenic
CTTCACATTCAGGCATTTAG+TGG 0.427188 1.1:-77707720 None:intergenic
ATATTTGGATTCAAAGGGGT+TGG 0.428451 1.1:+77707263 MS.gene71745:CDS
ATTTCCCATTCTTTCTCATC+GGG 0.433534 1.1:-77707217 None:intergenic
ATGGTGATATTTGGATTCAA+AGG 0.444319 1.1:+77707257 MS.gene71745:CDS
AATTTATTATACCTTTAACT+TGG 0.446187 1.1:-77707588 None:intergenic
AACTTTGTTGCTGGTTCGGA+TGG 0.454779 1.1:-77709085 None:intergenic
TCCGAACCAGCAACAAAGTT+GGG 0.458098 1.1:+77709088 MS.gene71745:CDS
TGGTGATATTTGGATTCAAA+GGG 0.458234 1.1:+77707258 MS.gene71745:CDS
GGTCTACTCTTCTTGTGAGA+AGG 0.460496 1.1:-77707463 None:intergenic
ATTCTTAGGGTTGCTGGTCA+TGG 0.460769 1.1:-77706711 None:intergenic
TTGGATTCAAAGGGGTTGGA+AGG 0.464926 1.1:+77707267 MS.gene71745:CDS
AGACTCCCGATGAGAAAGAA+TGG 0.468520 1.1:+77707212 MS.gene71745:CDS
CAATCAATTCACATCCACTT+TGG 0.477065 1.1:+77708774 MS.gene71745:CDS
TCTTGGATGATGAGAGAACT+TGG 0.477954 1.1:+77708055 MS.gene71745:CDS
TTTGAATCAGTTCATGGAGA+TGG 0.482390 1.1:+77708327 MS.gene71745:intron
ACACATTATTCATTAGATCA+TGG 0.484576 1.1:+77707298 MS.gene71745:CDS
TTCATGGAGATGGAATTAAC+TGG 0.486836 1.1:+77708337 MS.gene71745:CDS
TATTTCCCATTCTTTCTCAT+CGG 0.492052 1.1:-77707218 None:intergenic
CAATTTGAGATCAAGTCATT+GGG 0.498692 1.1:+77708816 MS.gene71745:CDS
TGAGACTGTACATATTCTTA+GGG 0.500244 1.1:-77706724 None:intergenic
GACTCCCGATGAGAAAGAAT+GGG 0.507920 1.1:+77707213 MS.gene71745:CDS
TTGGATTACCTTGTGGTGGA+AGG 0.508508 1.1:-77708236 None:intergenic
ATCCGAACCAGCAACAAAGT+TGG 0.508654 1.1:+77709087 MS.gene71745:CDS
GGATAATACATCACTTGTAC+AGG 0.514406 1.1:-77709064 None:intergenic
ACCTCAACAAATATTCAAGA+TGG 0.526205 1.1:+77706779 MS.gene71745:CDS
AATTAGTACTTTAAAAGCAT+AGG 0.530987 1.1:-77708187 None:intergenic
GCTTTCACTGAGAAATATAG+TGG 0.532968 1.1:+77707163 MS.gene71745:CDS
TCTCATCATCCAAGACCTGA+AGG 0.534348 1.1:-77708047 None:intergenic
CAACAAAGTTGGGTGAAGGT+TGG 0.542982 1.1:+77709098 MS.gene71745:CDS
TGGATTACCTTGTGGTGGAA+GGG 0.545050 1.1:-77708235 None:intergenic
GAAGAAAATAAATTGCAGGC+TGG 0.548366 1.1:+77709133 MS.gene71745:CDS
TCGGGAGTCTTGAGAAACAT+TGG 0.550403 1.1:-77707199 None:intergenic
AACTCAAAGAAATTCACTGC+AGG 0.555404 1.1:+77708708 MS.gene71745:CDS
ATTAACTGGTTAGAAACTGC+AGG 0.556059 1.1:+77708351 MS.gene71745:CDS
AAAGAAATTCACTGCAGGCT+AGG 0.559813 1.1:+77708713 MS.gene71745:CDS
TCCATCTTGAATATTTGTTG+AGG 0.562475 1.1:-77706780 None:intergenic
TTCATTAGATCATGGTCACA+TGG 0.571925 1.1:+77707306 MS.gene71745:CDS
CATCTTGGATTACCTTGTGG+TGG 0.585751 1.1:-77708240 None:intergenic
TCATTGGGATGTTTACAGAC+CGG 0.600053 1.1:+77708831 MS.gene71745:CDS
GGTGATATTTGGATTCAAAG+GGG 0.604343 1.1:+77707259 MS.gene71745:CDS
TTCATATGTTAATCAATACA+TGG 0.607228 1.1:+77707847 MS.gene71745:CDS
CTCATCATCCAAGACCTGAA+GGG 0.610171 1.1:-77708046 None:intergenic
ATTGACACAAGTGAAGATGT+CGG 0.614793 1.1:+77707529 MS.gene71745:CDS
TATGTAAACCTCAAAATGAG+AGG 0.618304 1.1:-77707350 None:intergenic
CCAGCAACAAAGTTGGGTGA+AGG 0.622086 1.1:+77709094 MS.gene71745:CDS
ACGGTAATAATCAACATGAA+CGG 0.624679 1.1:+77707410 MS.gene71745:CDS
TCATTCTCGAGCAAGTACTT+GGG 0.630141 1.1:+77708995 MS.gene71745:CDS
CAACATTCCCTTCCACCACA+AGG 0.632695 1.1:+77708228 MS.gene71745:CDS
TGAAGCATGGTCAAGAGCAG+AGG 0.641697 1.1:+77707738 MS.gene71745:CDS
TTGGCATACCTCAGGAACGA+AGG 0.641759 1.1:+77708684 MS.gene71745:intron
AAATGCCTGAATGTGAAGCA+TGG 0.702749 1.1:+77707725 MS.gene71745:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGATTACTAATAACTTTA+AGG - chr1.1:77708273-77708292 None:intergenic 15.0%
!! AATTTATTATACCTTTAACT+TGG - chr1.1:77707591-77707610 None:intergenic 15.0%
!!! ACTTTTGTTCAAAATTTAAA+GGG - chr1.1:77707999-77708018 None:intergenic 15.0%
!!! ATCTGATAATAATTTGAAAT+TGG + chr1.1:77708128-77708147 MS.gene71745:CDS 15.0%
!!! TAAAGTTATTAGTAATCTTT+TGG + chr1.1:77708273-77708292 MS.gene71745:intron 15.0%
!!! TAATACAAAATGTTGTTTAA+TGG + chr1.1:77708525-77708544 MS.gene71745:intron 15.0%
!!! TACTTTTGTTCAAAATTTAA+AGG - chr1.1:77708000-77708019 None:intergenic 15.0%
!!! TCTGATAATAATTTGAAATT+GGG + chr1.1:77708129-77708148 MS.gene71745:CDS 15.0%
!! AAAACTATTATGTCGTATAA+AGG + chr1.1:77708393-77708412 MS.gene71745:CDS 20.0%
!! AATCACTAGATATATGTATT+TGG - chr1.1:77708885-77708904 None:intergenic 20.0%
!! AGGTATAATAAATTCATGAT+TGG + chr1.1:77707597-77707616 MS.gene71745:intron 20.0%
!! ATCATACAGTACTTAAATTT+CGG - chr1.1:77706867-77706886 None:intergenic 20.0%
!! TTCATATGTTAATCAATACA+TGG + chr1.1:77707847-77707866 MS.gene71745:CDS 20.0%
!!! AATTAGTACTTTAAAAGCAT+AGG - chr1.1:77708190-77708209 None:intergenic 20.0%
!!! AATTGATTATATGCTTTTGT+TGG + chr1.1:77708665-77708684 MS.gene71745:intron 20.0%
!!! TCAATTCTCAATTTTTTAAG+TGG - chr1.1:77707514-77707533 None:intergenic 20.0%
!!! TTTTCTTAGAAAGATACATA+TGG - chr1.1:77706986-77707005 None:intergenic 20.0%
!!! TTTTGAACAAAAGTATTTGA+AGG + chr1.1:77708005-77708024 MS.gene71745:CDS 20.0%
! ACACATTATTCATTAGATCA+TGG + chr1.1:77707298-77707317 MS.gene71745:CDS 25.0%
! ATACATTTGACTAAAAAGGA+TGG + chr1.1:77707238-77707257 MS.gene71745:CDS 25.0%
! ATTAAAAGTTCAAGTGAGTT+AGG - chr1.1:77706944-77706963 None:intergenic 25.0%
! CATAAATACATATTCCTTAC+CGG - chr1.1:77708853-77708872 None:intergenic 25.0%
! GGAAATACATTTGACTAAAA+AGG + chr1.1:77707234-77707253 MS.gene71745:CDS 25.0%
! TGTAGAAGAAAATAAATTGC+AGG + chr1.1:77709129-77709148 MS.gene71745:CDS 25.0%
! TGTATGAGAAAAATTAGTAG+CGG + chr1.1:77708090-77708109 MS.gene71745:CDS 25.0%
!! GAACAATCCAATTGAAATTT+TGG + chr1.1:77707432-77707451 MS.gene71745:CDS 25.0%
!! GAACTTGAAATTTGTGATTT+TGG - chr1.1:77707487-77707506 None:intergenic 25.0%
!! TTGTTATGTTATGTTTTACG+CGG + chr1.1:77706893-77706912 MS.gene71745:intron 25.0%
!!! CTCAAATTGATAGTGAAATT+TGG - chr1.1:77708805-77708824 None:intergenic 25.0%
ACCTCAACAAATATTCAAGA+TGG + chr1.1:77706779-77706798 MS.gene71745:CDS 30.0%
ACGGTAATAATCAACATGAA+CGG + chr1.1:77707410-77707429 MS.gene71745:CDS 30.0%
ATGGTGATATTTGGATTCAA+AGG + chr1.1:77707257-77707276 MS.gene71745:CDS 30.0%
ATTCAACTTCAAATTCCCAA+AGG - chr1.1:77708446-77708465 None:intergenic 30.0%
CAAAATTTAAAGGGACATAC+TGG - chr1.1:77707990-77708009 None:intergenic 30.0%
CTAAAAAGGATGGTGATATT+TGG + chr1.1:77707248-77707267 MS.gene71745:CDS 30.0%
CTAGTGATTATGCTTAAAAC+TGG + chr1.1:77708896-77708915 MS.gene71745:intron 30.0%
GAAATTGAATATCGTGTTGA+CGG + chr1.1:77707391-77707410 MS.gene71745:CDS 30.0%
TACAGTTTGAGGAAAAATTG+TGG + chr1.1:77709041-77709060 MS.gene71745:CDS 30.0%
TATGTAAACCTCAAAATGAG+AGG - chr1.1:77707353-77707372 None:intergenic 30.0%
TATTTCCCATTCTTTCTCAT+CGG - chr1.1:77707221-77707240 None:intergenic 30.0%
TCGAAAGAAAGAAAGAAAGA+AGG - chr1.1:77706825-77706844 None:intergenic 30.0%
TGAGACTGTACATATTCTTA+GGG - chr1.1:77706727-77706746 None:intergenic 30.0%
TGCTATTGATCATCTCAAAA+AGG - chr1.1:77708164-77708183 None:intergenic 30.0%
TGCTCATCCAAAATTTCAAT+TGG - chr1.1:77707442-77707461 None:intergenic 30.0%
TGGTGATATTTGGATTCAAA+GGG + chr1.1:77707258-77707277 MS.gene71745:CDS 30.0%
TTCAACTTCAAATTCCCAAA+GGG - chr1.1:77708445-77708464 None:intergenic 30.0%
! AACATTGCAGTCTTCTTTTT+GGG - chr1.1:77709022-77709041 None:intergenic 30.0%
! CAATTTGAGATCAAGTCATT+GGG + chr1.1:77708816-77708835 MS.gene71745:CDS 30.0%
! CTCTTCTGAGAAATTGAATA+TGG - chr1.1:77707690-77707709 None:intergenic 30.0%
! CTTAGCTTCAGAATTTTTGA+AGG - chr1.1:77708746-77708765 None:intergenic 30.0%
! CTTGATGTTCATATTTTCAG+AGG + chr1.1:77709199-77709218 MS.gene71745:CDS 30.0%
! CTTTAAGGAAAAAACCATCT+TGG - chr1.1:77708258-77708277 None:intergenic 30.0%
! TAACATTGCAGTCTTCTTTT+TGG - chr1.1:77709023-77709042 None:intergenic 30.0%
! TCAATTTGAGATCAAGTCAT+TGG + chr1.1:77708815-77708834 MS.gene71745:CDS 30.0%
! TCCATCTTGAATATTTGTTG+AGG - chr1.1:77706783-77706802 None:intergenic 30.0%
! TTTAGGAATGTTTTGCGATT+TGG - chr1.1:77707563-77707582 None:intergenic 30.0%
!! TATTTCTCAGTGAAAGCATT+TGG - chr1.1:77707160-77707179 None:intergenic 30.0%
!!! GAAATTTGGTTTTTCCAAAG+TGG - chr1.1:77708791-77708810 None:intergenic 30.0%
AACTCAAAGAAATTCACTGC+AGG + chr1.1:77708708-77708727 MS.gene71745:CDS 35.0%
AGAAGGAAAGAATGCTTACA+AGG - chr1.1:77706808-77706827 None:intergenic 35.0%
ATATTTGGATTCAAAGGGGT+TGG + chr1.1:77707263-77707282 MS.gene71745:CDS 35.0%
ATCAAGCAGTATTGTCAAGA+TGG + chr1.1:77708464-77708483 MS.gene71745:intron 35.0%
ATCATGACAGCAGTGAAAAA+GGG - chr1.1:77707824-77707843 None:intergenic 35.0%
ATTAACTGGTTAGAAACTGC+AGG + chr1.1:77708351-77708370 MS.gene71745:CDS 35.0%
ATTGACACAAGTGAAGATGT+CGG + chr1.1:77707529-77707548 MS.gene71745:CDS 35.0%
ATTTCCCATTCTTTCTCATC+GGG - chr1.1:77707220-77707239 None:intergenic 35.0%
CAAAGTGGATGTGAATTGAT+TGG - chr1.1:77708776-77708795 None:intergenic 35.0%
CAATCAATTCACATCCACTT+TGG + chr1.1:77708774-77708793 MS.gene71745:CDS 35.0%
CCTAAACTTGTCCAAGTTAA+AGG + chr1.1:77707577-77707596 MS.gene71745:CDS 35.0%
CGTGAGTCGTAAAAAAATAG+AGG - chr1.1:77708574-77708593 None:intergenic 35.0%
GAAGAAAATAAATTGCAGGC+TGG + chr1.1:77709133-77709152 MS.gene71745:CDS 35.0%
GAAGGAAAGAATGCTTACAA+GGG - chr1.1:77706807-77706826 None:intergenic 35.0%
GATTATGCTTAAAACTGGAG+TGG + chr1.1:77708901-77708920 MS.gene71745:intron 35.0%
GCTTTCACTGAGAAATATAG+TGG + chr1.1:77707163-77707182 MS.gene71745:CDS 35.0%
GGATAATACATCACTTGTAC+AGG - chr1.1:77709067-77709086 None:intergenic 35.0%
GGTGATATTTGGATTCAAAG+GGG + chr1.1:77707259-77707278 MS.gene71745:CDS 35.0%
GTGAGACTGTACATATTCTT+AGG - chr1.1:77706728-77706747 None:intergenic 35.0%
TATCATGACAGCAGTGAAAA+AGG - chr1.1:77707825-77707844 None:intergenic 35.0%
TCATCCTTTGAATCAGTTCA+TGG + chr1.1:77708321-77708340 MS.gene71745:intron 35.0%
TTCATGGAGATGGAATTAAC+TGG + chr1.1:77708337-77708356 MS.gene71745:CDS 35.0%
TTCATTAGATCATGGTCACA+TGG + chr1.1:77707306-77707325 MS.gene71745:CDS 35.0%
TTTGAATCAGTTCATGGAGA+TGG + chr1.1:77708327-77708346 MS.gene71745:intron 35.0%
! ATCTCCATGAACTGATTCAA+AGG - chr1.1:77708328-77708347 None:intergenic 35.0%
! TCAGAAAACCTCTCATTTTG+AGG + chr1.1:77707342-77707361 MS.gene71745:CDS 35.0%
! TGAGAAAAATTAGTAGCGGA+TGG + chr1.1:77708094-77708113 MS.gene71745:CDS 35.0%
!! CCTTTAACTTGGACAAGTTT+AGG - chr1.1:77707580-77707599 None:intergenic 35.0%
!! TCAGAATTTTTGAAGGAGCA+TGG - chr1.1:77708739-77708758 None:intergenic 35.0%
AAAGAAATTCACTGCAGGCT+AGG + chr1.1:77708713-77708732 MS.gene71745:CDS 40.0%
AAATGCCTGAATGTGAAGCA+TGG + chr1.1:77707725-77707744 MS.gene71745:CDS 40.0%
AACCATCTTGGATTACCTTG+TGG - chr1.1:77708246-77708265 None:intergenic 40.0%
AAGCACAACATCTTCCTTGT+TGG - chr1.1:77709182-77709201 None:intergenic 40.0%
CTTCACATTCAGGCATTTAG+TGG - chr1.1:77707723-77707742 None:intergenic 40.0%
GACTGCAATGTTACAGTTTG+AGG + chr1.1:77709030-77709049 MS.gene71745:CDS 40.0%
GTACATATTCTTAGGGTTGC+TGG - chr1.1:77706720-77706739 None:intergenic 40.0%
TCATTCTCGAGCAAGTACTT+GGG + chr1.1:77708995-77709014 MS.gene71745:CDS 40.0%
TCATTGGGATGTTTACAGAC+CGG + chr1.1:77708831-77708850 MS.gene71745:CDS 40.0%
TCTTGGATGATGAGAGAACT+TGG + chr1.1:77708055-77708074 MS.gene71745:CDS 40.0%
TTCATTCTCGAGCAAGTACT+TGG + chr1.1:77708994-77709013 MS.gene71745:CDS 40.0%
!! TGTTTTTGTGCTTGCCAACA+AGG + chr1.1:77709165-77709184 MS.gene71745:CDS 40.0%
AGACTCCCGATGAGAAAGAA+TGG + chr1.1:77707212-77707231 MS.gene71745:CDS 45.0%
AGTTAGGTCCTGAGGATACA+AGG - chr1.1:77706928-77706947 None:intergenic 45.0%
ATCCGAACCAGCAACAAAGT+TGG + chr1.1:77709087-77709106 MS.gene71745:CDS 45.0%
ATCGTTGTTGTGACTCCCTT+TGG + chr1.1:77708427-77708446 MS.gene71745:intron 45.0%
CAACAAAGTTGGGTGAAGGT+TGG + chr1.1:77709098-77709117 MS.gene71745:CDS 45.0%
CACCACAAGGTAATCCAAGA+TGG + chr1.1:77708241-77708260 MS.gene71745:intron 45.0%
CATCTTGGATTACCTTGTGG+TGG - chr1.1:77708243-77708262 None:intergenic 45.0%
CTCATCATCCAAGACCTGAA+GGG - chr1.1:77708049-77708068 None:intergenic 45.0%
CTTGACCATGCTTCACATTC+AGG - chr1.1:77707733-77707752 None:intergenic 45.0%
GACTCCCGATGAGAAAGAAT+GGG + chr1.1:77707213-77707232 MS.gene71745:CDS 45.0%
GATTCCTTCCTTGTATCCTC+AGG + chr1.1:77706917-77706936 MS.gene71745:intron 45.0%
GGTCTACTCTTCTTGTGAGA+AGG - chr1.1:77707466-77707485 None:intergenic 45.0%
TCCGAACCAGCAACAAAGTT+GGG + chr1.1:77709088-77709107 MS.gene71745:CDS 45.0%
TCGGGAGTCTTGAGAAACAT+TGG - chr1.1:77707202-77707221 None:intergenic 45.0%
TCGTTGTTGTGACTCCCTTT+GGG + chr1.1:77708428-77708447 MS.gene71745:intron 45.0%
TCTCATCATCCAAGACCTGA+AGG - chr1.1:77708050-77708069 None:intergenic 45.0%
TTCAAGTGAGTTAGGTCCTG+AGG - chr1.1:77706936-77706955 None:intergenic 45.0%
TTGAGTTTCCTTCGTTCCTG+AGG - chr1.1:77708695-77708714 None:intergenic 45.0%
TTGGATTCAAAGGGGTTGGA+AGG + chr1.1:77707267-77707286 MS.gene71745:CDS 45.0%
! ACCCAACTTTGTTGCTGGTT+CGG - chr1.1:77709092-77709111 None:intergenic 45.0%
! TGCTTTTGTTGGCATACCTC+AGG + chr1.1:77708676-77708695 MS.gene71745:intron 45.0%
! TGGATTACCTTGTGGTGGAA+GGG - chr1.1:77708238-77708257 None:intergenic 45.0%
! TTGGATTACCTTGTGGTGGA+AGG - chr1.1:77708239-77708258 None:intergenic 45.0%
!! AACTTTGTTGCTGGTTCGGA+TGG - chr1.1:77709088-77709107 None:intergenic 45.0%
AGGTCCTGAGGATACAAGGA+AGG - chr1.1:77706924-77706943 None:intergenic 50.0%
CAACATTCCCTTCCACCACA+AGG + chr1.1:77708228-77708247 MS.gene71745:CDS 50.0%
CCAGCAACAAAGTTGGGTGA+AGG + chr1.1:77709094-77709113 MS.gene71745:CDS 50.0%
CCTTCACCCAACTTTGTTGC+TGG - chr1.1:77709097-77709116 None:intergenic 50.0%
GGGATGTTTACAGACCGGTA+AGG + chr1.1:77708836-77708855 MS.gene71745:intron 50.0%
TGAAGCATGGTCAAGAGCAG+AGG + chr1.1:77707738-77707757 MS.gene71745:CDS 50.0%
TTGGCATACCTCAGGAACGA+AGG + chr1.1:77708684-77708703 MS.gene71745:intron 50.0%
CGAAATCGCCCTTCAGGTCT+TGG + chr1.1:77708038-77708057 MS.gene71745:CDS 55.0%
GCAAAGCGAAATCGCCCTTC+AGG + chr1.1:77708032-77708051 MS.gene71745:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 77706713 77709231 77706713 ID=MS.gene71745
chr1.1 mRNA 77706713 77709231 77706713 ID=MS.gene71745.t1;Parent=MS.gene71745
chr1.1 exon 77706713 77706808 77706713 ID=MS.gene71745.t1.exon1;Parent=MS.gene71745.t1
chr1.1 CDS 77706713 77706808 77706713 ID=cds.MS.gene71745.t1;Parent=MS.gene71745.t1
chr1.1 exon 77707151 77707598 77707151 ID=MS.gene71745.t1.exon2;Parent=MS.gene71745.t1
chr1.1 CDS 77707151 77707598 77707151 ID=cds.MS.gene71745.t1;Parent=MS.gene71745.t1
chr1.1 exon 77707705 77707868 77707705 ID=MS.gene71745.t1.exon3;Parent=MS.gene71745.t1
chr1.1 CDS 77707705 77707868 77707705 ID=cds.MS.gene71745.t1;Parent=MS.gene71745.t1
chr1.1 exon 77707991 77708249 77707991 ID=MS.gene71745.t1.exon4;Parent=MS.gene71745.t1
chr1.1 CDS 77707991 77708249 77707991 ID=cds.MS.gene71745.t1;Parent=MS.gene71745.t1
chr1.1 exon 77708337 77708414 77708337 ID=MS.gene71745.t1.exon5;Parent=MS.gene71745.t1
chr1.1 CDS 77708337 77708414 77708337 ID=cds.MS.gene71745.t1;Parent=MS.gene71745.t1
chr1.1 exon 77708698 77708852 77708698 ID=MS.gene71745.t1.exon6;Parent=MS.gene71745.t1
chr1.1 CDS 77708698 77708852 77708698 ID=cds.MS.gene71745.t1;Parent=MS.gene71745.t1
chr1.1 exon 77708983 77709231 77708983 ID=MS.gene71745.t1.exon7;Parent=MS.gene71745.t1
chr1.1 CDS 77708983 77709231 77708983 ID=cds.MS.gene71745.t1;Parent=MS.gene71745.t1
Gene Sequence

>MS.gene71745

ATGACCAGCAACCCTAAGAATATGTACAGTCTCACTGCTTCTGCTATTCGTTTCTTTAAGATTGTTACCTCAACAAATATTCAAGATGGAACCCTTGTAAGCATTCTTTCCTTCTTTCTTTCTTTCTTTCGATTTTTTAACTTTTGAACGACCGAAATTTAAGTACTGTATGATAGTTGTTTGTTATGTTATGTTTTACGCGGAGATTCCTTCCTTGTATCCTCAGGACCTAACTCACTTGAACTTTTAATTATAAACAAAATATATAAGCCATATGTATCTTTCTAAGAAAAAACAATTTGATTGTTTCTTATAAAAAAAGACTAGAGCTAGAACTTTATACATTTAGATATGACTTCTACTAAGTGCAAGTAAAATGAAAAAAAAACATAATATCGAGTTTCTGTGCATGCTAACATAAATTTCAATGTACTGCAGAGAATTCCAAATGCTTTCACTGAGAAATATAGTGGTGATTTATCAAAGCCAATGTTTCTCAAGACTCCCGATGAGAAAGAATGGGAAATACATTTGACTAAAAAGGATGGTGATATTTGGATTCAAAGGGGTTGGAAGGAATTTGCTACACATTATTCATTAGATCATGGTCACATGGTTGTGTTTCAATATCAGAAAACCTCTCATTTTGAGGTTTACATATTTGACAAGAGTACTTTTGAAATTGAATATCGTGTTGACGGTAATAATCAACATGAACGGAACAATCCAATTGAAATTTTGGATGAGCAACCTTCTCACAAGAAGAGTAGACCAAAATCACAAATTTCAAGTTCTCAACCACTTAAAAAATTGAGAATTGACACAAGTGAAGATGTCGGAACAAGCTCCAAATCGCAAAACATTCCTAAACTTGTCCAAGTTAAAGGTATAATAAATTCATGATTGGATTAATCTCTATCATGTCATTTATCTAATCAAGATTTTGATTTTTGATGTTGATTTTTCATTACATACCATATTCAATTTCTCAGAAGAGATTGATTCTACCACTAAATGCCTGAATGTGAAGCATGGTCAAGAGCAGAGGAATTCAACTGCTAAAATTCTTGAAGCTTTAAACAAAGCAAAAAACTATGAATCTAACAATCCCTTTTTCACTGCTGTCATGATACATTCATATGTTAATCAATACATGGTGAGTCTCTGAACAGCTTCAATTTTTTATGTTAAGATTGTTTATTATCTTTTTTTTTTTTAAGCTAATGTATATCTTAAGTAGTTACTACATTTTCTAACTGTCACAAAATGAAAATCCAGTATGTCCCTTTAAATTTTGAACAAAAGTATTTGAAGGAACAGCAAAGCGAAATCGCCCTTCAGGTCTTGGATGATGAGAGAACTTGGATTGTTAAATATTGTATGAGAAAAATTAGTAGCGGATGGAAAACATTTGTATCTGATAATAATTTGAAATTGGGAGATGTTTGCCTTTTTGAGATGATCAATAGCAAATCCTATGCTTTTAAAGTACTAATTTTTCGAGTTGACGAAGAACAACATTCCCTTCCACCACAAGGTAATCCAAGATGGTTTTTTCCTTAAAGTTATTAGTAATCTTTTGGATCTGCACGATCATGATTATATTTTTCATCCTTTGAATCAGTTCATGGAGATGGAATTAACTGGTTAGAAACTGCAGGAATCACAGAAGTTGAAAGTAAAACTATTATGTCGTATAAAGGTAAATCTCAACATCGTTGTTGTGACTCCCTTTGGGAATTTGAAGTTGAATCAAGCAGTATTGTCAAGATGGAATTTGAACAAATCACGATTGTTCTACGATACACTATTTAATACAAAATGTTGTTTAATGGCACTACAATGTAGCTTGAATAATCCTCTATTTTTTTACGACTCACGATTGACAACACTAGAATCAAGAAAAAAAATGCAACTATTGAAGTTTTACAAATAGACATAGCTTATTTGTAAATTGATTATATGCTTTTGTTGGCATACCTCAGGAACGAAGGAAACTCAAAGAAATTCACTGCAGGCTAGGCCATGCTCCTTCAAAAATTCTGAAGCTAAGAAAGAAGCCAATCAATTCACATCCACTTTGGAAAAACCAAATTTCACTATCAATTTGAGATCAAGTCATTGGGATGTTTACAGACCGGTAAGGAATATGTATTTATGATATTTGAACCAAATACATATATCTAGTGATTATGCTTAAAACTGGAGTGGTATTTGTTTCATGTCATGCATTCTAGTAGCAACTGTAAAAGAAACACTAATTTGCGCAGCGTGTACGAAATTCATTCTCGAGCAAGTACTTGGGTCCCAAAAAGAAGACTGCAATGTTACAGTTTGAGGAAAAATTGTGGCCTGTACAAGTGATGTATTATCCATCCGAACCAGCAACAAAGTTGGGTGAAGGTTGGAGTCTGTTTGTAGAAGAAAATAAATTGCAGGCTGGAGATGTATGTGTTTTTGTGCTTGCCAACAAGGAAGATGTTGTGCTTGATGTTCATATTTTCAGAGGACGCAGTTAG
Protein sequence

>MS.gene71745.t1

MTSNPKNMYSLTASAIRFFKIVTSTNIQDGTLRIPNAFTEKYSGDLSKPMFLKTPDEKEWEIHLTKKDGDIWIQRGWKEFATHYSLDHGHMVVFQYQKTSHFEVYIFDKSTFEIEYRVDGNNQHERNNPIEILDEQPSHKKSRPKSQISSSQPLKKLRIDTSEDVGTSSKSQNIPKLVQVKEEIDSTTKCLNVKHGQEQRNSTAKILEALNKAKNYESNNPFFTAVMIHSYVNQYMYVPLNFEQKYLKEQQSEIALQVLDDERTWIVKYCMRKISSGWKTFVSDNNLKLGDVCLFEMINSKSYAFKVLIFRVDEEQHSLPPQVHGDGINWLETAGITEVESKTIMSYKGTKETQRNSLQARPCSFKNSEAKKEANQFTSTLEKPNFTINLRSSHWDVYRPRVRNSFSSKYLGPKKKTAMLQFEEKLWPVQVMYYPSEPATKLGEGWSLFVEENKLQAGDVCVFVLANKEDVVLDVHIFRGRS