AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71762

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71762.t1 MTR_1g109320 99.160 357 3 0 1 357 1 357 0.0 738
MS.gene71762.t1 MTR_5g090040 66.667 105 18 2 241 345 63 150 8.60e-43 146
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71762.t1 AT1G68200 49.020 306 109 8 62 352 29 302 5.73e-85 260
MS.gene71762.t1 AT1G68200 49.020 306 109 8 62 352 29 302 5.73e-85 260
MS.gene71762.t1 AT1G68200 48.693 306 109 8 62 352 29 301 2.03e-83 256
MS.gene71762.t1 AT1G68200 48.693 306 109 8 62 352 29 301 2.03e-83 256
MS.gene71762.t1 AT1G66810 61.644 146 47 1 200 345 168 304 2.34e-55 184
MS.gene71762.t1 AT1G66810 61.644 146 47 1 200 345 168 304 2.34e-55 184
MS.gene71762.t1 AT1G68200 41.026 156 72 5 62 217 29 164 4.63e-22 92.8
MS.gene71762.t1 AT1G68200 41.026 156 72 5 62 217 29 164 4.63e-22 92.8

Find 103 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTGCAGGATGGTCCTTGC+TGG 0.159266 1.1:-77959348 MS.gene71762:CDS
CTGCAGAGCTTCAACTTCTT+TGG 0.179049 1.1:+77961841 None:intergenic
TCTTTCCAGCTTCATTGATC+TGG 0.216499 1.1:+77959245 None:intergenic
GCCGCCGTTGCTGCTGTTTC+CGG 0.266911 1.1:+77961982 None:intergenic
GCCGATGCCGTAACCGCTTT+TGG 0.267264 1.1:+77962093 None:intergenic
CAACTTCTTTGGAACTTTCC+AGG 0.279329 1.1:+77961852 None:intergenic
TAGCGTGGGTGGCGGATCAC+TGG 0.295264 1.1:+77959381 None:intergenic
GATCTAACAGAAATGCTCTT+TGG 0.302932 1.1:+77961512 None:intergenic
GCGGGAGCGAGTAGCGCTTT+TGG 0.327959 1.1:+77961427 None:intergenic
GTCAATTCGCTCATGGCATT+GGG 0.349776 1.1:-77959413 MS.gene71762:CDS
GGTTTCCGTGGCTTGAATCT+TGG 0.355570 1.1:-77961677 MS.gene71762:CDS
CTTTCCAGCTTCATTGATCT+GGG 0.356760 1.1:+77959246 None:intergenic
CATGACGGAAATGGCATCTA+TGG 0.367595 1.1:+77959307 None:intergenic
CTTTATCCTTACTCTGACCT+TGG 0.377357 1.1:-77961950 MS.gene71762:CDS
GAAACTGGCACATGCCCTTA+TGG 0.383739 1.1:-77959444 MS.gene71762:CDS
TAATAATAACAAGGAGTTGC+AGG 0.387088 1.1:-77961609 MS.gene71762:CDS
CCGTCATCCAAAAGCGGTTA+CGG 0.390482 1.1:-77962100 MS.gene71762:CDS
GATACAGAAGCATCAGGATA+TGG 0.396830 1.1:-77961906 MS.gene71762:CDS
CTGTTTCCGGCGAGCGATGA+TGG 0.396990 1.1:+77961995 None:intergenic
TGTAACAAATGGCAGGAAAC+TGG 0.399409 1.1:-77959459 MS.gene71762:CDS
TCTGCAGGATGGTCCTTGCT+GGG 0.402584 1.1:-77959347 MS.gene71762:CDS
CTTCTGCAACTCTTTGTTCA+CGG 0.410248 1.1:+77961796 None:intergenic
CAGTAAGTGCATGACGGAAA+TGG 0.414882 1.1:+77959298 None:intergenic
CCTTCTCGTTCAAGCTTCGC+TGG 0.421155 1.1:-77961765 MS.gene71762:CDS
TATGTTTCTCAGTCGTCTCC+TGG 0.438714 1.1:-77961870 MS.gene71762:CDS
CAAACGGAGTTGATTGAGTC+TGG 0.444450 1.1:+77961711 None:intergenic
TGTCAATTCGCTCATGGCAT+TGG 0.444853 1.1:-77959414 MS.gene71762:CDS
CTTGAAGCTTGCTCCGCCTC+CGG 0.468503 1.1:-77961480 MS.gene71762:CDS
AATTGACAGTGGTCTCCATA+AGG 0.472418 1.1:+77959429 None:intergenic
CGTGGCTTGAATCTTGGAGA+TGG 0.475661 1.1:-77961671 MS.gene71762:CDS
GAAAGGAAAACTGTGCTGAT+TGG 0.476246 1.1:-77961649 MS.gene71762:CDS
GGCGTTCGACTGCATGTGAC+CGG 0.476954 1.1:+77962060 None:intergenic
AGCATTTCTGTTAGATCCAA+TGG 0.486635 1.1:-77961506 MS.gene71762:CDS
TCCAAAAGCGGTTACGGCAT+CGG 0.490846 1.1:-77962094 MS.gene71762:CDS
CGTCGGACTCTCATCAGATT+CGG 0.492348 1.1:+77961580 None:intergenic
GAAGCTCTGCAGCAGGAAAA+CGG 0.500754 1.1:-77961830 MS.gene71762:CDS
AAACCTTGCAACACATCAAA+CGG 0.507246 1.1:+77961695 None:intergenic
TGAGAATAACGGTGTTGAAA+CGG 0.507485 1.1:-77961549 MS.gene71762:CDS
AGCGTGGGTGGCGGATCACT+GGG 0.510898 1.1:+77959382 None:intergenic
AAATGGCATCTATGGCCATA+CGG 0.511220 1.1:+77959315 None:intergenic
GCTGGGGTTGTGTGCCCGTA+TGG 0.512898 1.1:-77959330 MS.gene71762:CDS
ATGCGTGATACAGAAGCATC+AGG 0.518868 1.1:-77961912 MS.gene71762:CDS
TCGCTGGAGAACCGATTCAA+TGG 0.519751 1.1:-77961749 MS.gene71762:CDS
CTCGCCGGAAACAGCAGCAA+CGG 0.524709 1.1:-77961986 MS.gene71762:CDS
GGAAACAGCAGCAACGGCGG+CGG 0.524773 1.1:-77961980 MS.gene71762:CDS
GCCGGAAACAGCAGCAACGG+CGG 0.525054 1.1:-77961983 MS.gene71762:CDS
GCTACAAAACTGAGGTCTGC+AGG 0.527724 1.1:-77959362 MS.gene71762:CDS
TTAGTTACGACGGCCGGAGG+CGG 0.529646 1.1:+77961467 None:intergenic
AGAAGTTGAAGCTCTGCAGC+AGG 0.529958 1.1:-77961837 MS.gene71762:CDS
ATTGACAGTGGTCTCCATAA+GGG 0.530052 1.1:+77959430 None:intergenic
TAAGCCCAGATCAATGAAGC+TGG 0.530814 1.1:-77959250 MS.gene71762:CDS
AGCAAGCTTCAAGTAGCCAT+TGG 0.531440 1.1:+77961490 None:intergenic
AGACTGAGCTCTGTAACAAA+TGG 0.531908 1.1:-77959470 MS.gene71762:CDS
AATGGCATCTATGGCCATAC+GGG 0.531942 1.1:+77959316 None:intergenic
AGGATCCGCCACCATTGAAT+CGG 0.534519 1.1:+77961738 None:intergenic
GCTCAGTCTTGAACATCCCC+TGG 0.541107 1.1:+77959484 None:intergenic
TCTGTTCCAAGGTCAGAGTA+AGG 0.546191 1.1:+77961944 None:intergenic
GATCTTCCATCATCGCTCGC+CGG 0.559218 1.1:-77962001 MS.gene71762:CDS
ACTCCGTTTGATGTGTTGCA+AGG 0.560653 1.1:-77961698 MS.gene71762:CDS
TGAGCTCTGTAACAAATGGC+AGG 0.566245 1.1:-77959466 MS.gene71762:CDS
AGCATTGTTGTTAGTTACGA+CGG 0.567553 1.1:+77961457 None:intergenic
CATCTCCAAGATTCAAGCCA+CGG 0.567612 1.1:+77961672 None:intergenic
TGTGCGAGGAGGGCAGAAAG+AGG 0.570699 1.1:-77959535 MS.gene71762:CDS
GACCACTGTCAATTCGCTCA+TGG 0.571725 1.1:-77959420 MS.gene71762:CDS
CTGCAGGATGGTCCTTGCTG+GGG 0.572424 1.1:-77959346 MS.gene71762:CDS
AGAGGAAGAGCCTCTTGAGA+TGG 0.573431 1.1:-77959517 MS.gene71762:CDS
AAAAGGTATTTGTGCGAGGA+GGG 0.574881 1.1:-77959545 MS.gene71762:CDS
GAGAACCGATTCAATGGTGG+CGG 0.578241 1.1:-77961743 MS.gene71762:CDS
CCAGCGAAGCTTGAACGAGA+AGG 0.578885 1.1:+77961765 None:intergenic
TACAACTGTATCAGATTGAG+TGG 0.578967 1.1:+77961397 None:intergenic
TGAGATGGTTGTGTACAACC+AGG 0.582022 1.1:-77959502 MS.gene71762:CDS
CTTGAATCTTGGAGATGGAA+AGG 0.582921 1.1:-77961666 MS.gene71762:CDS
CAGATTGAGTGGAGGAAGCG+CGG 0.588323 1.1:+77961408 None:intergenic
CGGAGTTGATTGAGTCTGGA+CGG 0.589982 1.1:+77961715 None:intergenic
GCAACTCTTTGTTCACGGCA+CGG 0.595404 1.1:+77961801 None:intergenic
AGATTGAGTGGAGGAAGCGC+GGG 0.600576 1.1:+77961409 None:intergenic
CAAAAGGTATTTGTGCGAGG+AGG 0.603500 1.1:-77959546 MS.gene71762:CDS
TTGTTGTTAGTTACGACGGC+CGG 0.605294 1.1:+77961461 None:intergenic
GATGTGTTGCAAGGTTTCCG+TGG 0.607851 1.1:-77961689 MS.gene71762:CDS
GGTCACATGCAGTCGAACGC+CGG 0.607925 1.1:-77962058 MS.gene71762:CDS
CTTGTTCAGTAAGTGCATGA+CGG 0.608476 1.1:+77959292 None:intergenic
CAAAACTGAGGTCTGCAGGA+TGG 0.616724 1.1:-77959358 MS.gene71762:CDS
ACGAGTGTGATTGAGAATAA+CGG 0.622937 1.1:-77961560 MS.gene71762:CDS
ATGAGTCGTACTCTGTTCCA+AGG 0.623681 1.1:+77961933 None:intergenic
ACGGGCACACAACCCCAGCA+AGG 0.626804 1.1:+77959334 None:intergenic
CTGGAGAACCGATTCAATGG+TGG 0.634958 1.1:-77961746 MS.gene71762:CDS
TGTTCTCCGTCATCCAAAAG+CGG 0.637659 1.1:-77962106 MS.gene71762:CDS
GAGATGGTTGTGTACAACCA+GGG 0.638365 1.1:-77959501 MS.gene71762:CDS
TTGTTAGTTACGACGGCCGG+AGG 0.641381 1.1:+77961464 None:intergenic
CAGCAAAAGGTATTTGTGCG+AGG 0.645044 1.1:-77959549 MS.gene71762:CDS
GGCATCGGCGTCAACAACGC+CGG 0.645707 1.1:-77962079 MS.gene71762:CDS
TCAATTCGCTCATGGCATTG+GGG 0.646224 1.1:-77959412 MS.gene71762:CDS
TTGTACACAACCATCTCAAG+AGG 0.647753 1.1:+77959507 None:intergenic
ACCGATCAAAATGCATAACA+AGG 0.654571 1.1:-77962134 None:intergenic
AACTGTATCAGATTGAGTGG+AGG 0.659126 1.1:+77961400 None:intergenic
TAACATCAATAATAATAACA+AGG 0.675567 1.1:-77961618 MS.gene71762:CDS
TGCCATGAGCGAATTGACAG+TGG 0.682669 1.1:+77959418 None:intergenic
TTATTCTCAATCACACTCGT+CGG 0.688787 1.1:+77961563 None:intergenic
AGTTGATTGAGTCTGGACGG+AGG 0.689033 1.1:+77961718 None:intergenic
ATAACGGTGTTGAAACGGAG+AGG 0.717587 1.1:-77961544 MS.gene71762:CDS
CCACCCACGCTACAAAACTG+AGG 0.721664 1.1:-77959370 MS.gene71762:CDS
AGATGGTTGTGTACAACCAG+GGG 0.741581 1.1:-77959500 MS.gene71762:CDS
GTACAGCGAAGCAAACACGC+CGG 0.776738 1.1:+77962039 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATTTATGTTGAAAATA+AGG - chr1.1:77961474-77961493 MS.gene71762:CDS 10.0%
!! AGCATATATATTAATAATAG+AGG + chr1.1:77961451-77961470 None:intergenic 15.0%
!! ATTATAATGTAAAAACTGTA+TGG + chr1.1:77960946-77960965 None:intergenic 15.0%
!! TAACAAAACAAATAACTAAA+TGG + chr1.1:77961356-77961375 None:intergenic 15.0%
!! TAACATCAATAATAATAACA+AGG - chr1.1:77959748-77959767 MS.gene71762:intron 15.0%
!!! CAGTTTTTACATTATAATTA+AGG - chr1.1:77960948-77960967 MS.gene71762:intron 15.0%
!!! TTTTTACATTATAATTAAGG+TGG - chr1.1:77960951-77960970 MS.gene71762:intron 15.0%
!! TAGATTTGATTGTTGATATT+CGG - chr1.1:77961755-77961774 MS.gene71762:CDS 20.0%
!!! AATTGTGTTCAATTTTGAAA+TGG - chr1.1:77961532-77961551 MS.gene71762:CDS 20.0%
!!! CGATATTTTAAACTAATAGA+TGG - chr1.1:77960685-77960704 MS.gene71762:intron 20.0%
!!! GCATCAAAATTTAACTTAAT+TGG + chr1.1:77960921-77960940 None:intergenic 20.0%
!!! TGGTTTTTCTAAGTTTTAAA+GGG - chr1.1:77961191-77961210 MS.gene71762:intron 20.0%
!!! TTGGTTTTTCTAAGTTTTAA+AGG - chr1.1:77961190-77961209 MS.gene71762:intron 20.0%
!!! TTTAAAACTTAGAAAAACCA+AGG + chr1.1:77961191-77961210 None:intergenic 20.0%
! TCATACAATGTCTACATTAT+AGG - chr1.1:77961052-77961071 MS.gene71762:intron 25.0%
!!! ACATTATAGGAGTATTTAAG+AGG - chr1.1:77961065-77961084 MS.gene71762:intron 25.0%
!!! ATGAGATAAAGATTTTAGAG+AGG - chr1.1:77960713-77960732 MS.gene71762:intron 25.0%
!!! GGTTTTTCTAAGTTTTAAAG+GGG - chr1.1:77961192-77961211 MS.gene71762:intron 25.0%
!!! TAAAGATTTTAGAGAGGAAA+CGG - chr1.1:77960719-77960738 MS.gene71762:intron 25.0%
!!! TAAGTTTTAAAGGGGATAAA+TGG - chr1.1:77961200-77961219 MS.gene71762:intron 25.0%
AAACATTAGTATGACTGTCA+AGG + chr1.1:77961587-77961606 None:intergenic 30.0%
AACCAACAACTAGTATAAAC+TGG + chr1.1:77960332-77960351 None:intergenic 30.0%
ACATTTATGATAGCCATGTA+TGG - chr1.1:77961127-77961146 MS.gene71762:intron 30.0%
ACTAACAAGCAAGTCAAATT+TGG + chr1.1:77960178-77960197 None:intergenic 30.0%
CAGGTTAAAATGTCACAAAA+AGG + chr1.1:77960423-77960442 None:intergenic 30.0%
CTGTATATGGTTTCAAATTG+CGG - chr1.1:77960462-77960481 MS.gene71762:intron 30.0%
GAAAAAACAACCAAACTACA+AGG + chr1.1:77960272-77960291 None:intergenic 30.0%
GTAATGTCTTGAATCTTCAT+TGG - chr1.1:77961392-77961411 MS.gene71762:intron 30.0%
TAATAATAACAAGGAGTTGC+AGG - chr1.1:77959757-77959776 MS.gene71762:intron 30.0%
TACTTCGAGATAAAGATGAA+TGG - chr1.1:77961501-77961520 MS.gene71762:CDS 30.0%
TATATAGAACTAGCAAGACT+AGG - chr1.1:77961017-77961036 MS.gene71762:intron 30.0%
TTACATTATTATGAGCGTCA+AGG + chr1.1:77961685-77961704 None:intergenic 30.0%
! AAGCAAGGTTTTACTTCATT+TGG + chr1.1:77960218-77960237 None:intergenic 30.0%
! AAGGTTTTACTTCATTTGGA+AGG + chr1.1:77960214-77960233 None:intergenic 30.0%
! TGTCACTCAATTTCTTTTCA+TGG - chr1.1:77961269-77961288 MS.gene71762:intron 30.0%
!! TTTTAAAGGGGATAAATGGT+TGG - chr1.1:77961204-77961223 MS.gene71762:intron 30.0%
!!! ACAACCATGGTTTTAAAATG+CGG + chr1.1:77960879-77960898 None:intergenic 30.0%
AAACCATATACAGAGCACAT+TGG + chr1.1:77960455-77960474 None:intergenic 35.0%
AAACCTTGCAACACATCAAA+CGG + chr1.1:77959674-77959693 None:intergenic 35.0%
ACGAGTGTGATTGAGAATAA+CGG - chr1.1:77959806-77959825 MS.gene71762:intron 35.0%
AGCATTTCTGTTAGATCCAA+TGG - chr1.1:77959860-77959879 MS.gene71762:intron 35.0%
ATGGCAAACTAGAGCTAATT+TGG + chr1.1:77960370-77960389 None:intergenic 35.0%
CAATAGCTGCAATATTGCAA+AGG - chr1.1:77960835-77960854 MS.gene71762:intron 35.0%
CTCCAGTTTATACTAGTTGT+TGG - chr1.1:77960327-77960346 MS.gene71762:intron 35.0%
CTGTAACAAACCTTGTAGTT+TGG - chr1.1:77960259-77960278 MS.gene71762:intron 35.0%
GATCTAACAGAAATGCTCTT+TGG + chr1.1:77959857-77959876 None:intergenic 35.0%
TACAACTGTATCAGATTGAG+TGG + chr1.1:77959972-77959991 None:intergenic 35.0%
TACAAGTAACAAGTGATGCA+GGG - chr1.1:77961235-77961254 MS.gene71762:intron 35.0%
TGTTACTATACTGCAGCAAA+AGG - chr1.1:77961804-77961823 MS.gene71762:CDS 35.0%
TTACAAGTAACAAGTGATGC+AGG - chr1.1:77961234-77961253 MS.gene71762:intron 35.0%
TTAGTATGACTGTCAAGGAA+TGG + chr1.1:77961582-77961601 None:intergenic 35.0%
TTATGATCACACCACAATTG+CGG + chr1.1:77960534-77960553 None:intergenic 35.0%
TTATTCTCAATCACACTCGT+CGG + chr1.1:77959806-77959825 None:intergenic 35.0%
! AGCATTGTTGTTAGTTACGA+CGG + chr1.1:77959912-77959931 None:intergenic 35.0%
! GTCCACTCAGTGTTATTAAT+CGG + chr1.1:77961729-77961748 None:intergenic 35.0%
! GTGGTTTGAAATCAATACCT+TGG - chr1.1:77961171-77961190 MS.gene71762:intron 35.0%
! TGAGAATAACGGTGTTGAAA+CGG - chr1.1:77959817-77959836 MS.gene71762:intron 35.0%
!! AAAATTAAGTTGACGCCACA+AGG - chr1.1:77960796-77960815 MS.gene71762:intron 35.0%
AAACCATGGTTGTTTGTGCT+TGG - chr1.1:77960886-77960905 MS.gene71762:intron 40.0%
AAATGGCATCTATGGCCATA+CGG + chr1.1:77962054-77962073 None:intergenic 40.0%
AACTGTATCAGATTGAGTGG+AGG + chr1.1:77959969-77959988 None:intergenic 40.0%
AATTGACAGTGGTCTCCATA+AGG + chr1.1:77961940-77961959 None:intergenic 40.0%
ACAAGTAACAAGTGATGCAG+GGG - chr1.1:77961236-77961255 MS.gene71762:intron 40.0%
AGACTGAGCTCTGTAACAAA+TGG - chr1.1:77961896-77961915 MS.gene71762:CDS 40.0%
ATGGAAATTTGCAGTGCTGT+TGG - chr1.1:77961146-77961165 MS.gene71762:intron 40.0%
ATTGACAGTGGTCTCCATAA+GGG + chr1.1:77961939-77961958 None:intergenic 40.0%
CTTCTGCAACTCTTTGTTCA+CGG + chr1.1:77959573-77959592 None:intergenic 40.0%
CTTGAATCTTGGAGATGGAA+AGG - chr1.1:77959700-77959719 MS.gene71762:intron 40.0%
CTTGTTCAGTAAGTGCATGA+CGG + chr1.1:77962077-77962096 None:intergenic 40.0%
CTTTATCCTTACTCTGACCT+TGG - chr1.1:77959416-77959435 MS.gene71762:CDS 40.0%
CTTTCCAGCTTCATTGATCT+GGG + chr1.1:77962123-77962142 None:intergenic 40.0%
GCACTGCAAATTTCCATACA+TGG + chr1.1:77961143-77961162 None:intergenic 40.0%
TCTTTCCAGCTTCATTGATC+TGG + chr1.1:77962124-77962143 None:intergenic 40.0%
TGTAACAAATGGCAGGAAAC+TGG - chr1.1:77961907-77961926 MS.gene71762:CDS 40.0%
TTATTATGAGCGTCAAGGCA+TGG + chr1.1:77961680-77961699 None:intergenic 40.0%
TTGTACACAACCATCTCAAG+AGG + chr1.1:77961862-77961881 None:intergenic 40.0%
! CACCGATTAATAACACTGAG+TGG - chr1.1:77961724-77961743 MS.gene71762:CDS 40.0%
! GAAAGGAAAACTGTGCTGAT+TGG - chr1.1:77959717-77959736 MS.gene71762:intron 40.0%
! TTGTTACTCACTGCTGACTA+TGG - chr1.1:77961370-77961389 MS.gene71762:intron 40.0%
! TTGTTGGTTAGTAGTGTTGC+AGG - chr1.1:77960343-77960362 MS.gene71762:intron 40.0%
!! AAAAGGTATTTGTGCGAGGA+GGG - chr1.1:77961821-77961840 MS.gene71762:CDS 40.0%
!! ATTAGCTCTAGTTTGCCATG+AGG - chr1.1:77960371-77960390 MS.gene71762:intron 40.0%
!! CAACTTCTTTGGAACTTTCC+AGG + chr1.1:77959517-77959536 None:intergenic 40.0%
!! CAAGGTTTGTTACAGCTAAC+AGG + chr1.1:77960254-77960273 None:intergenic 40.0%
!! GAATCTTCATTGGTTAGCCT+TGG - chr1.1:77961402-77961421 MS.gene71762:CDS 40.0%
!! GATACAGAAGCATCAGGATA+TGG - chr1.1:77959460-77959479 MS.gene71762:CDS 40.0%
!!! ATGGTTTTATCCACTGCTGT+TGG - chr1.1:77961288-77961307 MS.gene71762:intron 40.0%
AAGGGGATAAATGGTTGGAC+TGG - chr1.1:77961209-77961228 MS.gene71762:intron 45.0%
AATGGCATCTATGGCCATAC+GGG + chr1.1:77962053-77962072 None:intergenic 45.0%
ACACCAAGCACAAACAACCA+TGG + chr1.1:77960892-77960911 None:intergenic 45.0%
ACTCCGTTTGATGTGTTGCA+AGG - chr1.1:77959668-77959687 MS.gene71762:intron 45.0%
AGATGGTTGTGTACAACCAG+GGG - chr1.1:77961866-77961885 MS.gene71762:CDS 45.0%
AGCAAGCTTCAAGTAGCCAT+TGG + chr1.1:77959879-77959898 None:intergenic 45.0%
AGTGCCGTAATGAGGGAATT+GGG - chr1.1:77960576-77960595 MS.gene71762:intron 45.0%
ATGACTGTCAAGGAATGGCA+AGG + chr1.1:77961577-77961596 None:intergenic 45.0%
ATGAGTCGTACTCTGTTCCA+AGG + chr1.1:77959436-77959455 None:intergenic 45.0%
CATCTCCAAGATTCAAGCCA+CGG + chr1.1:77959697-77959716 None:intergenic 45.0%
CTGCAGAGCTTCAACTTCTT+TGG + chr1.1:77959528-77959547 None:intergenic 45.0%
CTTGGACACATCTTGTGCTT+GGG - chr1.1:77961420-77961439 MS.gene71762:CDS 45.0%
GAGATGGTTGTGTACAACCA+GGG - chr1.1:77961865-77961884 MS.gene71762:CDS 45.0%
GATGTGTATTGTCGTCCTTG+TGG + chr1.1:77960814-77960833 None:intergenic 45.0%
GGTAATGACACAGACAAGCA+AGG + chr1.1:77960233-77960252 None:intergenic 45.0%
GTCAATTCGCTCATGGCATT+GGG - chr1.1:77961953-77961972 MS.gene71762:CDS 45.0%
GTGCCAATGTGCTCTGTATA+TGG - chr1.1:77960449-77960468 MS.gene71762:intron 45.0%
TAAGCCCAGATCAATGAAGC+TGG - chr1.1:77962116-77962135 MS.gene71762:CDS 45.0%
TATGTTTCTCAGTCGTCTCC+TGG - chr1.1:77959496-77959515 MS.gene71762:CDS 45.0%
TCAATTCGCTCATGGCATTG+GGG - chr1.1:77961954-77961973 MS.gene71762:CDS 45.0%
TCTGTTCCAAGGTCAGAGTA+AGG + chr1.1:77959425-77959444 None:intergenic 45.0%
TGAGATGGTTGTGTACAACC+AGG - chr1.1:77961864-77961883 MS.gene71762:CDS 45.0%
TGAGCTCTGTAACAAATGGC+AGG - chr1.1:77961900-77961919 MS.gene71762:CDS 45.0%
TGCACCCAATTCCCTCATTA+CGG + chr1.1:77960583-77960602 None:intergenic 45.0%
TGTCAATTCGCTCATGGCAT+TGG - chr1.1:77961952-77961971 MS.gene71762:CDS 45.0%
TGTTCTCCGTCATCCAAAAG+CGG - chr1.1:77959260-77959279 MS.gene71762:CDS 45.0%
! AGCTCATCTGTTTTGCCTCA+TGG + chr1.1:77960389-77960408 None:intergenic 45.0%
! ATAACGGTGTTGAAACGGAG+AGG - chr1.1:77959822-77959841 MS.gene71762:intron 45.0%
! ATTTGCAGTGCTGTTGGTAG+TGG - chr1.1:77961152-77961171 MS.gene71762:intron 45.0%
! CAAACGGAGTTGATTGAGTC+TGG + chr1.1:77959658-77959677 None:intergenic 45.0%
! CAGTAAGTGCATGACGGAAA+TGG + chr1.1:77962071-77962090 None:intergenic 45.0%
! CATGACGGAAATGGCATCTA+TGG + chr1.1:77962062-77962081 None:intergenic 45.0%
! TTGTTGTTAGTTACGACGGC+CGG + chr1.1:77959908-77959927 None:intergenic 45.0%
!! AGACCTCAGTTTTGTAGCGT+GGG + chr1.1:77962002-77962021 None:intergenic 45.0%
!! ATGCGTGATACAGAAGCATC+AGG - chr1.1:77959454-77959473 MS.gene71762:CDS 45.0%
!! CAAAAGGTATTTGTGCGAGG+AGG - chr1.1:77961820-77961839 MS.gene71762:CDS 45.0%
!! CAGCAAAAGGTATTTGTGCG+AGG - chr1.1:77961817-77961836 MS.gene71762:CDS 45.0%
!!! ATTTACTATTATTTATTTTA+TGG + chr1.1:77960757-77960776 None:intergenic 5.0%
AGAAGTTGAAGCTCTGCAGC+AGG - chr1.1:77959529-77959548 MS.gene71762:CDS 50.0%
AGAGGAAGAGCCTCTTGAGA+TGG - chr1.1:77961849-77961868 MS.gene71762:CDS 50.0%
AGCACATTGGCACAGAACAC+AGG + chr1.1:77960442-77960461 None:intergenic 50.0%
AGGATCCGCCACCATTGAAT+CGG + chr1.1:77959631-77959650 None:intergenic 50.0%
AGTTGATTGAGTCTGGACGG+AGG + chr1.1:77959651-77959670 None:intergenic 50.0%
ATCGCATCAAGCCGCAATTG+TGG - chr1.1:77960520-77960539 MS.gene71762:intron 50.0%
CAAAACTGAGGTCTGCAGGA+TGG - chr1.1:77962008-77962027 MS.gene71762:CDS 50.0%
CAGTGCCGTAATGAGGGAAT+TGG - chr1.1:77960575-77960594 MS.gene71762:intron 50.0%
CCAAGCACAAGATGTGTCCA+AGG + chr1.1:77961422-77961441 None:intergenic 50.0%
CCGTCATCCAAAAGCGGTTA+CGG - chr1.1:77959266-77959285 MS.gene71762:CDS 50.0%
CCTTGGACACATCTTGTGCT+TGG - chr1.1:77961419-77961438 MS.gene71762:CDS 50.0%
CGTCGGACTCTCATCAGATT+CGG + chr1.1:77959789-77959808 None:intergenic 50.0%
CGTGGCTTGAATCTTGGAGA+TGG - chr1.1:77959695-77959714 MS.gene71762:intron 50.0%
GAAACTGGCACATGCCCTTA+TGG - chr1.1:77961922-77961941 MS.gene71762:CDS 50.0%
GAAAGCTACACCAACAGCAG+TGG + chr1.1:77961301-77961320 None:intergenic 50.0%
GAAGCTCTGCAGCAGGAAAA+CGG - chr1.1:77959536-77959555 MS.gene71762:CDS 50.0%
GACCACTGTCAATTCGCTCA+TGG - chr1.1:77961946-77961965 MS.gene71762:CDS 50.0%
GATGTGTTGCAAGGTTTCCG+TGG - chr1.1:77959677-77959696 MS.gene71762:intron 50.0%
GCAACTCTTTGTTCACGGCA+CGG + chr1.1:77959568-77959587 None:intergenic 50.0%
GCGATTGCAGACAATACCGT+GGG + chr1.1:77960505-77960524 None:intergenic 50.0%
GCTACAAAACTGAGGTCTGC+AGG - chr1.1:77962004-77962023 MS.gene71762:CDS 50.0%
GGTTTCCGTGGCTTGAATCT+TGG - chr1.1:77959689-77959708 MS.gene71762:intron 50.0%
TCCAAAAGCGGTTACGGCAT+CGG - chr1.1:77959272-77959291 MS.gene71762:CDS 50.0%
TGCCATGAGCGAATTGACAG+TGG + chr1.1:77961951-77961970 None:intergenic 50.0%
TGCGATTGCAGACAATACCG+TGG + chr1.1:77960506-77960525 None:intergenic 50.0%
TGTCAAGGAATGGCAAGGCA+GGG + chr1.1:77961572-77961591 None:intergenic 50.0%
! CGGAGTTGATTGAGTCTGGA+CGG + chr1.1:77959654-77959673 None:intergenic 50.0%
! CTGGAGAACCGATTCAATGG+TGG - chr1.1:77959620-77959639 MS.gene71762:intron 50.0%
! GAGAACCGATTCAATGGTGG+CGG - chr1.1:77959623-77959642 MS.gene71762:intron 50.0%
! TCGCTGGAGAACCGATTCAA+TGG - chr1.1:77959617-77959636 MS.gene71762:intron 50.0%
!! CAGACCTCAGTTTTGTAGCG+TGG + chr1.1:77962003-77962022 None:intergenic 50.0%
!! CCGTAACCGCTTTTGGATGA+CGG + chr1.1:77959269-77959288 None:intergenic 50.0%
!!! GCGGCCGCATTTTAAAACCA+TGG - chr1.1:77960872-77960891 MS.gene71762:intron 50.0%
AAAGGCAGCGACTGCAACAG+CGG - chr1.1:77960853-77960872 MS.gene71762:intron 55.0%
ACGTCGCAGTGCCGTAATGA+GGG - chr1.1:77960569-77960588 MS.gene71762:intron 55.0%
CAGATTGAGTGGAGGAAGCG+CGG + chr1.1:77959961-77959980 None:intergenic 55.0%
CCACCCACGCTACAAAACTG+AGG - chr1.1:77961996-77962015 MS.gene71762:CDS 55.0%
CCAGCGAAGCTTGAACGAGA+AGG + chr1.1:77959604-77959623 None:intergenic 55.0%
CCTTCTCGTTCAAGCTTCGC+TGG - chr1.1:77959601-77959620 MS.gene71762:intron 55.0%
CTGTCAAGGAATGGCAAGGC+AGG + chr1.1:77961573-77961592 None:intergenic 55.0%
GATCTTCCATCATCGCTCGC+CGG - chr1.1:77959365-77959384 MS.gene71762:CDS 55.0%
GCTCAGTCTTGAACATCCCC+TGG + chr1.1:77961885-77961904 None:intergenic 55.0%
GTACAGCGAAGCAAACACGC+CGG + chr1.1:77959330-77959349 None:intergenic 55.0%
TCTGCAGGATGGTCCTTGCT+GGG - chr1.1:77962019-77962038 MS.gene71762:CDS 55.0%
TTGTTAGTTACGACGGCCGG+AGG + chr1.1:77959905-77959924 None:intergenic 55.0%
! AGATTGAGTGGAGGAAGCGC+GGG + chr1.1:77959960-77959979 None:intergenic 55.0%
! AGCGAGTAGCGCTTTTGGTG+CGG + chr1.1:77959937-77959956 None:intergenic 55.0%
!! CAGTTTTGTAGCGTGGGTGG+CGG + chr1.1:77961996-77962015 None:intergenic 55.0%
!! CCTCAGTTTTGTAGCGTGGG+TGG + chr1.1:77961999-77962018 None:intergenic 55.0%
CACGTCGCAGTGCCGTAATG+AGG - chr1.1:77960568-77960587 MS.gene71762:intron 60.0%
CTCATTACGGCACTGCGACG+TGG + chr1.1:77960570-77960589 None:intergenic 60.0%
CTCGCCGGAAACAGCAGCAA+CGG - chr1.1:77959380-77959399 MS.gene71762:CDS 60.0%
CTGCAGGATGGTCCTTGCTG+GGG - chr1.1:77962020-77962039 MS.gene71762:CDS 60.0%
CTGTTTCCGGCGAGCGATGA+TGG + chr1.1:77959374-77959393 None:intergenic 60.0%
GACAATACCGTGGGCGCATC+AGG + chr1.1:77960496-77960515 None:intergenic 60.0%
GGCGTTCGACTGCATGTGAC+CGG + chr1.1:77959309-77959328 None:intergenic 60.0%
GGTCACATGCAGTCGAACGC+CGG - chr1.1:77959308-77959327 MS.gene71762:CDS 60.0%
GTCTGCAGGATGGTCCTTGC+TGG - chr1.1:77962018-77962037 MS.gene71762:CDS 60.0%
TGCATCACCTGATGCGCCCA+CGG - chr1.1:77960486-77960505 MS.gene71762:intron 60.0%
TGTGCGAGGAGGGCAGAAAG+AGG - chr1.1:77961831-77961850 MS.gene71762:CDS 60.0%
TTAGTTACGACGGCCGGAGG+CGG + chr1.1:77959902-77959921 None:intergenic 60.0%
! CTTGAAGCTTGCTCCGCCTC+CGG - chr1.1:77959886-77959905 MS.gene71762:intron 60.0%
! GCCGATGCCGTAACCGCTTT+TGG + chr1.1:77959276-77959295 None:intergenic 60.0%
ACGGGCACACAACCCCAGCA+AGG + chr1.1:77962035-77962054 None:intergenic 65.0%
GCCGGAAACAGCAGCAACGG+CGG - chr1.1:77959383-77959402 MS.gene71762:CDS 65.0%
GCTGGGGTTGTGTGCCCGTA+TGG - chr1.1:77962036-77962055 MS.gene71762:CDS 65.0%
GGAAACAGCAGCAACGGCGG+CGG - chr1.1:77959386-77959405 MS.gene71762:CDS 65.0%
! GCGGGAGCGAGTAGCGCTTT+TGG + chr1.1:77959942-77959961 None:intergenic 65.0%
!! AGCGTGGGTGGCGGATCACT+GGG + chr1.1:77961987-77962006 None:intergenic 65.0%
!! GCCGCCGTTGCTGCTGTTTC+CGG + chr1.1:77959387-77959406 None:intergenic 65.0%
!! GGCATCGGCGTCAACAACGC+CGG - chr1.1:77959287-77959306 MS.gene71762:CDS 65.0%
!! TAGCGTGGGTGGCGGATCAC+TGG + chr1.1:77961988-77962007 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 77959242 77962146 77959242 ID=MS.gene71762
chr1.1 mRNA 77959242 77962146 77959242 ID=MS.gene71762.t1;Parent=MS.gene71762
chr1.1 exon 77961400 77962146 77961400 ID=MS.gene71762.t1.exon1;Parent=MS.gene71762.t1
chr1.1 CDS 77961400 77962146 77961400 ID=cds.MS.gene71762.t1;Parent=MS.gene71762.t1
chr1.1 exon 77959242 77959568 77959242 ID=MS.gene71762.t1.exon2;Parent=MS.gene71762.t1
chr1.1 CDS 77959242 77959568 77959242 ID=cds.MS.gene71762.t1;Parent=MS.gene71762.t1
Gene Sequence

>MS.gene71762

ATGCATAACAAGGACGTTTGTTCTCCGTCATCCAAAAGCGGTTACGGCATCGGCGTCAACAACGCCGGTCACATGCAGTCGAACGCCGGCGTGTTTGCTTCGCTGTACTCTGCTCTGAGTAATGATCTTCCATCATCGCTCGCCGGAAACAGCAGCAACGGCGGCGGATTTTCGCTTTATCCTTACTCTGACCTTGGAACAGAGTACGACTCATGCGTGATACAGAAGCATCAGGATATGGTGAATCGTCACAGTATGTTTCTCAGTCGTCTCCTGGAAAGTTCCAAAGAAGTTGAAGCTCTGCAGCAGGAAAACGGACAGCTCCGTGCCGTGAACAAAGAGTTGCAGAAGAATCTGAACCTTCTCGTTCAAGCTTCGCTGGAGAACCGATTCAATGGTGGCGGATCCTCCGTCCAGACTCAATCAACTCCGTTTGATGTGTTGCAAGGTTTCCGTGGCTTGAATCTTGGAGATGGAAAGGAAAACTGTGCTGATTGGAATAGCAATAACATCAATAATAATAACAAGGAGTTGCAGGAAGCTTCCGAATCTGATGAGAGTCCGACGAGTGTGATTGAGAATAACGGTGTTGAAACGGAGAGGTTCTCGCTTCCAAAGAGCATTTCTGTTAGATCCAATGGCTACTTGAAGCTTGCTCCGCCTCCGGCCGTCGTAACTAACAACAATGCTTGCCGCACCAAAAGCGCTACTCGCTCCCGCGCTTCCTCCACTCAATCTGATACAGTTGTAAGCACACGCACGTTATGATTGCTTTTATTTTATTTAATTAATTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAATTTTTTTTTTATTATTATTGCTGCTATTGTTATTGTGATCTTAGCTTAATTTAATGTGTTATTATTGCTTTTATAGTTATAAACCAAATTTGACTTGCTTGTTAGTAGCTAATTATTTTCCTTCCAAATGAAGTAAAACCTTGCTTGTCTGTGTCATTACCTGTTAGCTGTAACAAACCTTGTAGTTTGGTTGTTTTTTCATTTGCGTGTGCTTTTTGCAAAGATGCAAGTTCGACTCCAGTTTATACTAGTTGTTGGTTAGTAGTGTTGCAGGACCAAATTAGCTCTAGTTTGCCATGAGGCAAAACAGATGAGCTAAACTTTGAAGCCTTTTTGTGACATTTTAACCTGTGTTCTGTGCCAATGTGCTCTGTATATGGTTTCAAATTGCGGATGCATCACCTGATGCGCCCACGGTATTGTCTGCAATCGCATCAAGCCGCAATTGTGGTGTGATCATAAATCACATTTGAAACCACGTCGCAGTGCCGTAATGAGGGAATTGGGTGCAGAAAACTAGTGATCACACAATTTATTTTTATACTTTACTTTATCTTTATATCATAGATTTAGAGAGTATTTTAAAGAACTAGCGATATTTTAAACTAATAGATGGCTGATATGAGATAAAGATTTTAGAGAGGAAACGGAAGATACATGAGCCATAAAATAAATAATAGTAAATTATAGTATTTATGCTAATAAAAATTAAGTTGACGCCACAAGGACGACAATACACATCGCAATAGCTGCAATATTGCAAAGGCAGCGACTGCAACAGCGGCCGCATTTTAAAACCATGGTTGTTTGTGCTTGGTGTCATGTTCCAATTAAGTTAAATTTTGATGCAGCCATACAGTTTTTACATTATAATTAAGGTGGTTAAATAATCTTTCTCACACTTCTCAATAAACTCTTGAAATAATATATAGAACTAGCAAGACTAGGAAGATTGATGAGTCATACAATGTCTACATTATAGGAGTATTTAAGAGGTCAAATATATACTATTTTTCTACATTTCTGAATTTTAAGACATTTATGATAGCCATGTATGGAAATTTGCAGTGCTGTTGGTAGTGGTTTGAAATCAATACCTTGGTTTTTCTAAGTTTTAAAGGGGATAAATGGTTGGACTGGTTTTACAAGTAACAAGTGATGCAGGGGATGCAGAATATGTCACTCAATTTCTTTTCATGGTTTTATCCACTGCTGTTGGTGTAGCTTTCAATAGACGTATAGTGCTGCTTATAGTTTGTCTCCATTTAGTTATTTGTTTTGTTACTCACTGCTGACTATGGTAATGTCTTGAATCTTCATTGGTTAGCCTTGGACACATCTTGTGCTTGGGATTAGCCTCTATTATTAATATATATGCTTTGATTTATTTATGTTGAAAATAAGGACAATACTTCGAGATAAAGATGAATGGATGTAAATAATTGTGTTCAATTTTGAAATGGTGTTTTCTTGAATGCCCTGCCTTGCCATTCCTTGACAGTCATACTAATGTTTCTTTCATCTTGACTGATTGTATTTTTCATCTTATTGTTTTTTTTATTTGATTCATATTCAAAATGCTCTGCCATGCCTTGACGCTCATAATAATGTAAAAGTAGATTGTAGATGCATCACCGATTAATAACACTGAGTGGACATTATATAGATTTGATTGTTGATATTCGGAAGAATTGATCATTGTTGAAATTTTGTGTTACTATACTGCAGCAAAAGGTATTTGTGCGAGGAGGGCAGAAAGAGGAAGAGCCTCTTGAGATGGTTGTGTACAACCAGGGGATGTTCAAGACTGAGCTCTGTAACAAATGGCAGGAAACTGGCACATGCCCTTATGGAGACCACTGTCAATTCGCTCATGGCATTGGGGAGCTTCGCCCAGTGATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTTGTGTGCCCGTATGGCCATAGATGCCATTTCCGTCATGCACTTACTGAACAAGAGAAAGCTGTGTCACAATCTAAGCCCAGATCAATGAAGCTGGAAAGATGA
Protein sequence

>MS.gene71762.t1

MHNKDVCSPSSKSGYGIGVNNAGHMQSNAGVFASLYSALSNDLPSSLAGNSSNGGGFSLYPYSDLGTEYDSCVIQKHQDMVNRHSMFLSRLLESSKEVEALQQENGQLRAVNKELQKNLNLLVQASLENRFNGGGSSVQTQSTPFDVLQGFRGLNLGDGKENCADWNSNNINNNNKELQEASESDESPTSVIENNGVETERFSLPKSISVRSNGYLKLAPPPAVVTNNNACRTKSATRSRASSTQSDTVQKVFVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAVSQSKPRSMKLER