AlfalfaGEDB | MS.gene71894

M. sativa cultivar XinJiangDaYe / MS.gene71894

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71894.t1	XP_019454446.1	79.1	115	24	0	6	120	100	214	1.00E-48	202.6

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71894.t1	Q9FHB2	57.0	114	49	0	7	120	89	202	5.6e-35	148.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71894.t1	A0A4P1R855	79.1	115	24	0	6	120	100	214	7.4e-49	202.6

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene71894.t1	TF	B3

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71894.t1	MTR_2g102450	73.504	117	31	4	120	47	163	1.47e-63	197
MS.gene71894.t1	MTR_2g102450	73.504	117	31	4	120	101	217	5.23e-62	194
MS.gene71894.t1	MTR_4g008310	66.087	115	39	6	120	178	292	1.15e-51	166
MS.gene71894.t1	MTR_3g101520	48.039	102	53	19	120	100	201	1.08e-30	109
MS.gene71894.t1	MTR_3g101520	48.039	102	53	19	120	108	209	1.70e-30	108
MS.gene71894.t1	MTR_4g101970	80.645	31	6	90	120	55	85	4.39e-11	58.9

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71894.t1	AT5G58280	57.018	114	49	7	120	89	202	1.15e-40	136
MS.gene71894.t1	AT5G58280	57.018	114	49	7	120	121	234	2.03e-40	136
MS.gene71894.t1	AT5G58280	57.018	114	49	7	120	122	235	2.08e-40	136
MS.gene71894.t1	AT3G19184	49.020	102	52	19	120	104	205	3.84e-27	101
MS.gene71894.t1	AT3G19184	49.020	102	52	19	120	104	205	5.01e-27	101
MS.gene71894.t1	AT5G42700	46.078	102	55	19	120	59	160	6.81e-26	95.9
MS.gene71894.t1	AT5G42700	46.078	102	55	19	120	104	205	2.00e-25	95.9

Showing 1 to 7 of 7 entries

Previous1Next

Find 23 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAACAAAGAACTCGTGCT+TGG	0.497832	8.3:-19444198	MS.gene71894:CDS
AACAGCTAAAACCATGAGAC+CGG	0.566641	8.3:+19444110	None:intergenic
AAGTCAATGGTCCGGTCTCA+TGG	0.512045	8.3:-19444121	MS.gene71894:CDS
AATATTAGTAACATGGCTAT+TGG	0.329071	8.3:-19444271	None:intergenic
ACAAAGAACTCGTGCTTGGA+AGG	0.515051	8.3:-19444194	MS.gene71894:CDS
ACCATTGACTTGATAAATGA+TGG	0.398569	8.3:+19444133	None:intergenic
AGTAGAAGTGGGCTAAGTGG+TGG	0.694572	8.3:-19443825	MS.gene71894:CDS
ATTTGCATTGGAACATAAAT+TGG	0.189949	8.3:-19443793	MS.gene71894:CDS
CATTTATCAAGTCAATGGTC+CGG	0.559658	8.3:-19444129	MS.gene71894:CDS
GAAGTGGGCTAAGTGGTGGC+TGG	0.540038	8.3:-19443821	MS.gene71894:CDS

Showing 1 to 10 of 23 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GAGTATGATGTTGTCTATAT+TGG	-	chr8.3:19444177-19444196	MS.gene71894:CDS	30.0%
TCCATCATTTATCAAGTCAA+TGG	-	chr8.3:19443892-19443911	MS.gene71894:CDS	30.0%
TTGGAACATAAATTGGATGA+TGG	-	chr8.3:19444240-19444259	MS.gene71894:CDS	30.0%
AAACATGGATAAGAATGTGC+AGG	+	chr8.3:19443983-19444002	None:intergenic	35.0%
CATTTATCAAGTCAATGGTC+CGG	-	chr8.3:19443897-19443916	MS.gene71894:CDS	35.0%
TCTATATTGGCAGTAGAAGT+GGG	-	chr8.3:19444190-19444209	MS.gene71894:CDS	35.0%
TTTAGAGGATGAAAATGGCT+CGG	-	chr8.3:19444155-19444174	MS.gene71894:CDS	35.0%
AACAACAAAGAACTCGTGCT+TGG	-	chr8.3:19443828-19443847	MS.gene71894:CDS	40.0%
AACAGCTAAAACCATGAGAC+CGG	+	chr8.3:19443919-19443938	None:intergenic	40.0%
GACTCTTTAGTTACGTTGCA+AGG	-	chr8.3:19443777-19443796	MS.gene71894:CDS	40.0%

Showing 1 to 10 of 36 entries

Previous1 2 3 4Next

Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	19443767	19444281	19443767	ID=MS.gene71894
chr8.3	mRNA	19443767	19444281	19443767	ID=MS.gene71894.t1;Parent=MS.gene71894
chr8.3	exon	19444102	19444281	19444102	ID=MS.gene71894.t1.exon1;Parent=MS.gene71894.t1
chr8.3	CDS	19444102	19444281	19444102	ID=cds.MS.gene71894.t1;Parent=MS.gene71894.t1
chr8.3	exon	19443767	19443949	19443767	ID=MS.gene71894.t1.exon2;Parent=MS.gene71894.t1
chr8.3	CDS	19443767	19443949	19443767	ID=cds.MS.gene71894.t1;Parent=MS.gene71894.t1

Gene Sequence

>MS.gene71894

ATGGCTATTGGACTCTTTAGTTACGTTGCAAGGCCAATAGATGAAATCGAAAAAGCTACAAAACAACAAAGAACTCGTGCTTGGAAGGCTGCAGAGGAACTTCAAATCAATTTGCAGTCTACGAATCCATCATTTATCAAGTCAATGGTCCGGTCTCATGGTTTTAGCTGTTTTTGGTTGGTATGTTTCTGTTCAGAATATTTTTCTATATGGCCTGCACATTCTTATCCATGTTTTGTACATTCTTTTTAAGTTTAGATTATTGATTAATATACATCTAACACATGACATATTTTCCAAAATATTATATTTATTTGTCTTTATTCTTCCAGGGTCTTCCTAGTAGGTTTTGTGAGGAACATCTTCCAAAAACAGTGCATAACATGATTTTAGAGGATGAAAATGGCTCGGAGTATGATGTTGTCTATATTGGCAGTAGAAGTGGGCTAAGTGGTGGCTGGAGAGGATTTGCATTGGAACATAAATTGGATGATGGTGATGCACTTGTTTTTTAA

Protein sequence

>MS.gene71894.t1

MAIGLFSYVARPIDEIEKATKQQRTRAWKAAEELQINLQSTNPSFIKSMVRSHGFSCFWLGLPSRFCEEHLPKTVHNMILEDENGSEYDVVYIGSRSGLSGGWRGFALEHKLDDGDALVF