AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71979

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71979.t1 MTR_4g100550 93.214 280 10 3 1 271 1 280 0.0 525
MS.gene71979.t1 MTR_5g013010 71.477 298 51 9 2 270 1 293 3.00e-134 381
MS.gene71979.t1 MTR_8g006705 57.237 304 86 11 3 264 1 302 2.55e-88 265
MS.gene71979.t1 MTR_7g093430 65.054 186 55 2 50 226 89 273 8.62e-73 225
MS.gene71979.t1 MTR_1g054285 60.000 205 64 5 49 241 82 280 2.94e-69 216
MS.gene71979.t1 MTR_2g061030 74.000 150 35 2 91 237 176 324 1.14e-67 213
MS.gene71979.t1 MTR_5g013010 66.492 191 31 8 2 163 1 187 4.94e-64 199
MS.gene71979.t1 MTR_4g097600 75.573 131 31 1 95 225 110 239 7.61e-63 199
MS.gene71979.t1 MTR_5g014890 71.774 124 34 1 103 226 114 236 2.73e-58 187
MS.gene71979.t1 MTR_1g017090 61.151 139 44 3 111 240 129 266 3.14e-52 172
MS.gene71979.t1 MTR_4g084750 62.097 124 42 1 106 224 59 182 2.05e-46 154
MS.gene71979.t1 MTR_2g038625 45.714 175 95 0 68 242 38 212 1.34e-42 145
MS.gene71979.t1 MTR_2g038580 45.714 175 95 0 68 242 38 212 1.34e-42 145
MS.gene71979.t1 MTR_3g103590 50.888 169 76 3 103 271 136 297 5.04e-41 143
MS.gene71979.t1 MTR_4g126900 58.333 120 47 1 114 230 90 209 1.27e-38 135
MS.gene71979.t1 MTR_7g010020 39.241 158 87 2 53 201 16 173 2.97e-23 95.9
MS.gene71979.t1 MTR_8g468210 40.496 121 69 1 81 198 43 163 4.85e-21 90.1
MS.gene71979.t1 MTR_4g107650 47.748 111 51 1 94 197 77 187 1.68e-20 89.7
MS.gene71979.t1 MTR_6g007647 48.454 97 43 1 108 197 29 125 2.60e-20 87.8
MS.gene71979.t1 MTR_6g011610 48.000 100 51 1 101 199 84 183 2.90e-20 88.2
MS.gene71979.t1 MTR_3g080100 46.667 105 49 1 102 199 10 114 3.07e-20 86.7
MS.gene71979.t1 MTR_6g007647 48.454 97 43 1 108 197 63 159 4.35e-20 87.8
MS.gene71979.t1 MTR_3g080100 46.667 105 49 1 102 199 49 153 4.97e-20 87.0
MS.gene71979.t1 MTR_6g011610 48.000 100 51 1 101 199 65 164 5.44e-20 87.0
MS.gene71979.t1 MTR_8g089895 50.505 99 42 1 108 199 50 148 2.11e-19 86.3
MS.gene71979.t1 MTR_5g039000 45.000 100 54 1 100 199 66 164 7.56e-19 84.3
MS.gene71979.t1 MTR_5g038280 45.690 116 55 2 96 204 71 185 8.59e-19 84.7
MS.gene71979.t1 MTR_1g061660 46.067 89 48 0 112 200 59 147 1.84e-18 82.4
MS.gene71979.t1 MTR_7g103340 45.455 88 48 0 112 199 63 150 3.50e-18 81.6
MS.gene71979.t1 MTR_3g086790 41.406 128 67 2 104 223 52 179 4.00e-18 82.4
MS.gene71979.t1 MTR_8g469430 46.809 94 43 1 112 198 89 182 3.77e-17 79.7
MS.gene71979.t1 MTR_3g092150 44.086 93 45 1 115 200 41 133 1.15e-13 69.3
MS.gene71979.t1 MTR_5g029320 33.333 141 93 1 57 197 38 177 1.35e-13 70.9
MS.gene71979.t1 MTR_8g026960 42.683 82 47 0 116 197 38 119 3.40e-13 67.8
MS.gene71979.t1 MTR_5g019650 42.342 111 62 1 98 206 39 149 5.21e-13 67.0
MS.gene71979.t1 MTR_5g019680 42.202 109 58 1 98 206 39 142 6.40e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71979.t1 AT4G16780 60.690 290 84 6 2 270 1 281 1.51e-101 298
MS.gene71979.t1 AT5G47370 60.714 280 75 9 2 259 1 267 1.78e-96 285
MS.gene71979.t1 AT4G17460 57.095 296 83 10 2 270 1 279 3.60e-95 281
MS.gene71979.t1 AT3G60390 63.750 240 59 7 48 264 75 309 1.61e-88 266
MS.gene71979.t1 AT2G44910 62.332 223 49 5 27 226 67 277 6.63e-81 246
MS.gene71979.t1 AT5G06710 59.091 198 63 4 72 254 135 329 2.12e-68 215
MS.gene71979.t1 AT4G37790 76.423 123 28 1 103 225 117 238 2.84e-61 195
MS.gene71979.t1 AT2G22800 71.875 128 32 2 101 225 99 225 2.88e-58 187
MS.gene71979.t1 AT2G01430 52.326 172 65 4 73 233 95 260 4.69e-46 155
MS.gene71979.t1 AT1G70920 57.480 127 43 2 103 226 57 175 5.13e-37 130
MS.gene71979.t1 AT1G70920 57.480 127 43 2 103 226 27 145 5.16e-37 129
MS.gene71979.t1 AT5G06710 56.075 107 32 2 72 163 135 241 2.73e-27 107
MS.gene71979.t1 AT1G69780 44.444 126 65 1 79 199 47 172 1.50e-23 97.4
MS.gene71979.t1 AT2G01430 50.505 99 38 2 73 163 95 190 7.15e-21 88.6
MS.gene71979.t1 AT5G65310 34.759 187 103 5 90 269 33 207 6.67e-20 87.4
MS.gene71979.t1 AT5G65310 34.759 187 103 5 90 269 51 225 7.21e-20 87.8
MS.gene71979.t1 AT1G26960 46.875 96 51 0 104 199 63 158 8.66e-20 86.3
MS.gene71979.t1 AT3G01470 47.312 93 42 1 112 197 68 160 6.70e-18 81.6
MS.gene71979.t1 AT3G01220 42.857 119 60 4 90 201 63 180 2.07e-17 80.5
MS.gene71979.t1 AT5G15150 38.710 124 68 2 77 199 86 202 2.85e-17 80.5
MS.gene71979.t1 AT5G03790 46.067 89 48 0 112 200 77 165 3.81e-17 79.0
MS.gene71979.t1 AT4G40060 45.361 97 46 1 110 199 57 153 1.09e-16 78.6
MS.gene71979.t1 AT2G22430 46.875 96 47 1 110 201 60 155 2.06e-16 77.8
MS.gene71979.t1 AT1G27045 38.849 139 66 3 75 200 31 163 2.79e-16 76.6
MS.gene71979.t1 AT1G27045 43.119 109 50 2 75 177 31 133 3.83e-16 75.9
MS.gene71979.t1 AT1G27045 57.576 66 28 0 112 177 25 90 4.16e-16 74.7
MS.gene71979.t1 AT1G27045 57.576 66 28 0 112 177 25 90 4.16e-16 74.7
MS.gene71979.t1 AT1G27045 57.576 66 28 0 112 177 17 82 4.19e-16 74.7
MS.gene71979.t1 AT2G46680 43.158 95 50 1 115 205 35 129 9.29e-16 75.5
MS.gene71979.t1 AT2G46680 36.508 126 71 1 115 240 35 151 9.89e-16 75.1
MS.gene71979.t1 AT5G03790 43.956 91 51 0 112 202 77 167 1.55e-14 70.9
MS.gene71979.t1 AT2G36610 38.776 98 52 1 111 200 70 167 5.10e-14 69.3
MS.gene71979.t1 AT4G36740 37.624 101 63 0 98 198 42 142 1.36e-13 68.6
MS.gene71979.t1 AT4G36740 37.624 101 63 0 98 198 41 141 1.44e-13 68.6
MS.gene71979.t1 AT3G61890 42.169 83 48 0 115 197 33 115 4.17e-13 67.4
MS.gene71979.t1 AT2G18550 36.885 122 74 1 112 230 61 182 8.82e-13 66.2
MS.gene71979.t1 AT5G53980 36.207 116 70 1 112 223 11 126 2.30e-11 61.2

Find 66 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGATTAATTACGGGATTA+AGG 0.204975 8.1:-22595520 None:intergenic
CAAACCTAGCTCTTCTGTTT+TGG 0.228150 8.1:-22595686 None:intergenic
TCCTCGTACAGATCGGAAAT+TGG 0.274377 8.1:+22595214 MS.gene71979:intron
AAAATCTAACGGAGGAAAAT+AGG 0.298194 8.1:+22595840 MS.gene71979:CDS
CCCCTGCTTCTTCTTCCTCT+TGG 0.308178 8.1:-22595313 None:intergenic
TCCATCCAAACTTTCACTTC+AGG 0.343155 8.1:+22595002 MS.gene71979:CDS
CTGCTGCTCCAGTCACAAAT+AGG 0.366833 8.1:+22596068 MS.gene71979:CDS
CATCCTCGGGCTGTGCCTAT+AGG 0.371086 8.1:+22596034 MS.gene71979:CDS
TAGATTAATTACGGGATTAA+GGG 0.388703 8.1:-22595519 None:intergenic
ATCTAACCGTCACCATTCTA+TGG 0.389555 8.1:+22596003 MS.gene71979:CDS
GCATACCTGAAGTGAAAGTT+TGG 0.401576 8.1:-22595007 None:intergenic
GCACAGCCCGAGGATGGGCT+TGG 0.401813 8.1:-22596027 None:intergenic
TTTCTTCAAGAATAGCTGAT+TGG 0.405030 8.1:-22595478 None:intergenic
AGCACAGTTTCAAGTGTTAG+TGG 0.413647 8.1:+22595350 MS.gene71979:CDS
GCAGAAGCCCATGGGCCTAT+AGG 0.413881 8.1:-22596049 None:intergenic
ACACTTGAAACTGTGCTGTT+TGG 0.414647 8.1:-22595344 None:intergenic
CACAGCCCGAGGATGGGCTT+GGG 0.426678 8.1:-22596026 None:intergenic
TACGAGGAATCGACGTGAAT+CGG 0.436608 8.1:+22595267 MS.gene71979:CDS
GCATCAACACAAGCATTAGA+TGG 0.449100 8.1:-22595980 None:intergenic
TGGCATTCAATAGCTGTAGA+TGG 0.450684 8.1:-22595293 None:intergenic
AACCAGACTTCTACTTGTCT+TGG 0.452242 8.1:-22595663 None:intergenic
CTTTATGATGATGATTGAAA+AGG 0.455188 8.1:+22594917 None:intergenic
CTATGGCCCAAGCCCATCCT+CGG 0.455411 8.1:+22596020 MS.gene71979:CDS
GGCTGTGCCTATAGGCCCAT+GGG 0.462021 8.1:+22596042 MS.gene71979:CDS
TAAAACGCCGTGATCATTGA+CGG 0.467131 8.1:-22596105 None:intergenic
GGGCTGTGCCTATAGGCCCA+TGG 0.472141 8.1:+22596041 MS.gene71979:CDS
TCATTTGCATGTAAAATTGT+GGG 0.480628 8.1:-22595907 None:intergenic
TTGGCACTTGCAAAGCAACT+TGG 0.482027 8.1:+22595633 MS.gene71979:CDS
GGGCACATAGTAAGAGTAGT+TGG 0.484138 8.1:-22595935 None:intergenic
CTATAGGCACAGCCCGAGGA+TGG 0.486518 8.1:-22596033 None:intergenic
GTCCAAGACAAGTAGAAGTC+TGG 0.488744 8.1:+22595661 MS.gene71979:CDS
TGCCAAGAGGAAGAAGAAGC+AGG 0.500256 8.1:+22595311 MS.gene71979:CDS
GATCATGACGTGGAAAATAG+AGG 0.505863 8.1:+22595395 MS.gene71979:CDS
ATGATTGAAAAGGAAGACTT+GGG 0.506471 8.1:+22594927 MS.gene71979:CDS
GTGAAAGTTTGGATGGAAGA+TGG 0.511827 8.1:-22594996 None:intergenic
TTGATTGTGAAGTGTTGAAA+AGG 0.523538 8.1:+22595810 MS.gene71979:CDS
GATGGGCTTGGGCCATAGAA+TGG 0.526314 8.1:-22596015 None:intergenic
ACCTGAAGTGAAAGTTTGGA+TGG 0.531944 8.1:-22595003 None:intergenic
GATGATTGAAAAGGAAGACT+TGG 0.537309 8.1:+22594926 MS.gene71979:CDS
TATAGGCACAGCCCGAGGAT+GGG 0.537378 8.1:-22596032 None:intergenic
TATGGCCCAAGCCCATCCTC+GGG 0.537951 8.1:+22596021 MS.gene71979:CDS
GTCATTTGCATGTAAAATTG+TGG 0.542757 8.1:-22595908 None:intergenic
AAGAAGACGCTGAAACTGCT+AGG 0.546613 8.1:+22595432 MS.gene71979:CDS
ACTGGAGCAGCAGAAGCCCA+TGG 0.547767 8.1:-22596058 None:intergenic
GCCAAGAGGAAGAAGAAGCA+GGG 0.554990 8.1:+22595312 MS.gene71979:CDS
GAAACATGCAGAGGAGAGAG+TGG 0.568617 8.1:+22595236 MS.gene71979:CDS
TCAAACATCCTATTTGTGAC+TGG 0.572768 8.1:-22596076 None:intergenic
GGTTCCAAAACAGAAGAGCT+AGG 0.575953 8.1:+22595682 MS.gene71979:CDS
ACAGCCACACGTTCACAAGA+AGG 0.580372 8.1:-22595956 None:intergenic
CTGGAGCAGCAGAAGCCCAT+GGG 0.581463 8.1:-22596057 None:intergenic
CACATAGTAAGAGTAGTTGG+TGG 0.588373 8.1:-22595932 None:intergenic
CATTTGCATGTAAAATTGTG+GGG 0.595232 8.1:-22595906 None:intergenic
CAGCCACACGTTCACAAGAA+GGG 0.595325 8.1:-22595955 None:intergenic
GGAAAATAGGAGACTACAGA+AGG 0.611602 8.1:+22595853 MS.gene71979:CDS
CTTGGGCCATAGAATGGTGA+CGG 0.617650 8.1:-22596009 None:intergenic
CCAAGAGGAAGAAGAAGCAG+GGG 0.620587 8.1:+22595313 MS.gene71979:CDS
GTGCCCTTCTTGTGAACGTG+TGG 0.623014 8.1:+22595952 MS.gene71979:CDS
AAGGTGCTGTGAAAATCTAA+CGG 0.636807 8.1:+22595829 MS.gene71979:CDS
CGGAAATTGGAAACATGCAG+AGG 0.654897 8.1:+22595227 MS.gene71979:CDS
TACAGCTATTGAATGCCAAG+AGG 0.669451 8.1:+22595298 MS.gene71979:CDS
GGGCCTATAGGCACAGCCCG+AGG 0.674672 8.1:-22596037 None:intergenic
GATTCACGTCGATTCCTCGT+AGG 0.688742 8.1:-22595265 None:intergenic
GACGAAGCTGAAGCAAACAG+AGG 0.718082 8.1:+22595787 MS.gene71979:CDS
GTGCTGTGAAAATCTAACGG+AGG 0.721195 8.1:+22595832 MS.gene71979:CDS
GAGAGAAGAAGATCATGACG+TGG 0.729981 8.1:+22595385 MS.gene71979:CDS
GAGAGTGGAAAATACCTACG+AGG 0.764552 8.1:+22595251 MS.gene71979:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAATAAAATAATTA+AGG - chr8.1:22595564-22595583 None:intergenic 0.0%
!!! GATTTGAAATTATTTATTAT+AGG + chr8.1:22595765-22595784 MS.gene71979:intron 10.0%
!!! TGTTTATTTTTTTACTAATT+TGG + chr8.1:22595584-22595603 MS.gene71979:intron 10.0%
!! GTATTGAGATAGATTAATTA+CGG - chr8.1:22595531-22595550 None:intergenic 20.0%
!! TATTGAGATAGATTAATTAC+GGG - chr8.1:22595530-22595549 None:intergenic 20.0%
!!! AAATAATTAAGGAAGTTGAT+TGG - chr8.1:22595553-22595572 None:intergenic 20.0%
!!! ACAAGTATTTTTTTAGATCA+TGG + chr8.1:22595060-22595079 MS.gene71979:intron 20.0%
! ATAGATTAATTACGGGATTA+AGG - chr8.1:22595523-22595542 None:intergenic 25.0%
! GATCTAAAAAAATACTTGTG+TGG - chr8.1:22595059-22595078 None:intergenic 25.0%
! TAGATTAATTACGGGATTAA+GGG - chr8.1:22595522-22595541 None:intergenic 25.0%
! TCATTTGCATGTAAAATTGT+GGG - chr8.1:22595910-22595929 None:intergenic 25.0%
!!! TTTTGTTTAGAAGCAAAAGT+TGG + chr8.1:22595614-22595633 MS.gene71979:intron 25.0%
AAAATCTAACGGAGGAAAAT+AGG + chr8.1:22595840-22595859 MS.gene71979:CDS 30.0%
ATGATTGAAAAGGAAGACTT+GGG + chr8.1:22594927-22594946 MS.gene71979:CDS 30.0%
CATTTGCATGTAAAATTGTG+GGG - chr8.1:22595909-22595928 None:intergenic 30.0%
GTCATTTGCATGTAAAATTG+TGG - chr8.1:22595911-22595930 None:intergenic 30.0%
TTTCTTCAAGAATAGCTGAT+TGG - chr8.1:22595481-22595500 None:intergenic 30.0%
!! TTGATTGTGAAGTGTTGAAA+AGG + chr8.1:22595810-22595829 MS.gene71979:CDS 30.0%
CTGACAATACTGAAATCGTT+AGG - chr8.1:22595123-22595142 None:intergenic 35.0%
GATGATTGAAAAGGAAGACT+TGG + chr8.1:22594926-22594945 MS.gene71979:CDS 35.0%
TCAAACATCCTATTTGTGAC+TGG - chr8.1:22596079-22596098 None:intergenic 35.0%
TCAGTATTGTCAGTTGAGTT+AGG + chr8.1:22595130-22595149 MS.gene71979:intron 35.0%
TTAGATCATGGATTCAAACC+AGG + chr8.1:22595072-22595091 MS.gene71979:intron 35.0%
! TGATTTTTCCTCGTACAGAT+CGG + chr8.1:22595207-22595226 MS.gene71979:intron 35.0%
!! AAGGTGCTGTGAAAATCTAA+CGG + chr8.1:22595829-22595848 MS.gene71979:CDS 35.0%
AACCAGACTTCTACTTGTCT+TGG - chr8.1:22595666-22595685 None:intergenic 40.0%
ACCTGAAGTGAAAGTTTGGA+TGG - chr8.1:22595006-22595025 None:intergenic 40.0%
ACTTGTGTGGATCTAGAGAA+TGG - chr8.1:22595046-22595065 None:intergenic 40.0%
ATCTAACCGTCACCATTCTA+TGG + chr8.1:22596003-22596022 MS.gene71979:CDS 40.0%
CACATAGTAAGAGTAGTTGG+TGG - chr8.1:22595935-22595954 None:intergenic 40.0%
GATCATGACGTGGAAAATAG+AGG + chr8.1:22595395-22595414 MS.gene71979:CDS 40.0%
GCATACCTGAAGTGAAAGTT+TGG - chr8.1:22595010-22595029 None:intergenic 40.0%
GCATCAACACAAGCATTAGA+TGG - chr8.1:22595983-22596002 None:intergenic 40.0%
GGAAAATAGGAGACTACAGA+AGG + chr8.1:22595853-22595872 MS.gene71979:CDS 40.0%
GTGAAAGTTTGGATGGAAGA+TGG - chr8.1:22594999-22595018 None:intergenic 40.0%
TACAGCTATTGAATGCCAAG+AGG + chr8.1:22595298-22595317 MS.gene71979:CDS 40.0%
TCCATCCAAACTTTCACTTC+AGG + chr8.1:22595002-22595021 MS.gene71979:CDS 40.0%
TGGCATTCAATAGCTGTAGA+TGG - chr8.1:22595296-22595315 None:intergenic 40.0%
TTAGCATTTCGTAGTCATCC+TGG - chr8.1:22595093-22595112 None:intergenic 40.0%
! ACACTTGAAACTGTGCTGTT+TGG - chr8.1:22595347-22595366 None:intergenic 40.0%
! AGCACAGTTTCAAGTGTTAG+TGG + chr8.1:22595350-22595369 MS.gene71979:CDS 40.0%
!! CAAACCTAGCTCTTCTGTTT+TGG - chr8.1:22595689-22595708 None:intergenic 40.0%
AAGAAGACGCTGAAACTGCT+AGG + chr8.1:22595432-22595451 MS.gene71979:CDS 45.0%
CGGAAATTGGAAACATGCAG+AGG + chr8.1:22595227-22595246 MS.gene71979:CDS 45.0%
GAGAGAAGAAGATCATGACG+TGG + chr8.1:22595385-22595404 MS.gene71979:CDS 45.0%
GAGAGTGGAAAATACCTACG+AGG + chr8.1:22595251-22595270 MS.gene71979:CDS 45.0%
GGGCACATAGTAAGAGTAGT+TGG - chr8.1:22595938-22595957 None:intergenic 45.0%
GGTTCCAAAACAGAAGAGCT+AGG + chr8.1:22595682-22595701 MS.gene71979:CDS 45.0%
GTCCAAGACAAGTAGAAGTC+TGG + chr8.1:22595661-22595680 MS.gene71979:CDS 45.0%
GTGCTGTGAAAATCTAACGG+AGG + chr8.1:22595832-22595851 MS.gene71979:CDS 45.0%
TACGAGGAATCGACGTGAAT+CGG + chr8.1:22595267-22595286 MS.gene71979:CDS 45.0%
TCCAATTTCCGATCTGTACG+AGG - chr8.1:22595218-22595237 None:intergenic 45.0%
TCCTCGTACAGATCGGAAAT+TGG + chr8.1:22595214-22595233 MS.gene71979:intron 45.0%
TTGGCACTTGCAAAGCAACT+TGG + chr8.1:22595633-22595652 MS.gene71979:CDS 45.0%
ACAGCCACACGTTCACAAGA+AGG - chr8.1:22595959-22595978 None:intergenic 50.0%
CAGCCACACGTTCACAAGAA+GGG - chr8.1:22595958-22595977 None:intergenic 50.0%
CCAAGAGGAAGAAGAAGCAG+GGG + chr8.1:22595313-22595332 MS.gene71979:CDS 50.0%
CTGCTGCTCCAGTCACAAAT+AGG + chr8.1:22596068-22596087 MS.gene71979:CDS 50.0%
CTTGGGCCATAGAATGGTGA+CGG - chr8.1:22596012-22596031 None:intergenic 50.0%
GAAACATGCAGAGGAGAGAG+TGG + chr8.1:22595236-22595255 MS.gene71979:CDS 50.0%
GACGAAGCTGAAGCAAACAG+AGG + chr8.1:22595787-22595806 MS.gene71979:CDS 50.0%
GCCAAGAGGAAGAAGAAGCA+GGG + chr8.1:22595312-22595331 MS.gene71979:CDS 50.0%
TGCCAAGAGGAAGAAGAAGC+AGG + chr8.1:22595311-22595330 MS.gene71979:CDS 50.0%
!! GATTCACGTCGATTCCTCGT+AGG - chr8.1:22595268-22595287 None:intergenic 50.0%
CCCCTGCTTCTTCTTCCTCT+TGG - chr8.1:22595316-22595335 None:intergenic 55.0%
GTGCCCTTCTTGTGAACGTG+TGG + chr8.1:22595952-22595971 MS.gene71979:CDS 55.0%
TATAGGCACAGCCCGAGGAT+GGG - chr8.1:22596035-22596054 None:intergenic 55.0%
! GATGGGCTTGGGCCATAGAA+TGG - chr8.1:22596018-22596037 None:intergenic 55.0%
ACTGGAGCAGCAGAAGCCCA+TGG - chr8.1:22596061-22596080 None:intergenic 60.0%
CATCCTCGGGCTGTGCCTAT+AGG + chr8.1:22596034-22596053 MS.gene71979:CDS 60.0%
CTATAGGCACAGCCCGAGGA+TGG - chr8.1:22596036-22596055 None:intergenic 60.0%
CTATGGCCCAAGCCCATCCT+CGG + chr8.1:22596020-22596039 MS.gene71979:CDS 60.0%
CTGGAGCAGCAGAAGCCCAT+GGG - chr8.1:22596060-22596079 None:intergenic 60.0%
GCAGAAGCCCATGGGCCTAT+AGG - chr8.1:22596052-22596071 None:intergenic 60.0%
GGCTGTGCCTATAGGCCCAT+GGG + chr8.1:22596042-22596061 MS.gene71979:CDS 60.0%
TATGGCCCAAGCCCATCCTC+GGG + chr8.1:22596021-22596040 MS.gene71979:CDS 60.0%
GGGCTGTGCCTATAGGCCCA+TGG + chr8.1:22596041-22596060 MS.gene71979:CDS 65.0%
! CACAGCCCGAGGATGGGCTT+GGG - chr8.1:22596029-22596048 None:intergenic 65.0%
GGGCCTATAGGCACAGCCCG+AGG - chr8.1:22596040-22596059 None:intergenic 70.0%
! GCACAGCCCGAGGATGGGCT+TGG - chr8.1:22596030-22596049 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 22594921 22596114 22594921 ID=MS.gene71979
chr8.1 mRNA 22594921 22596114 22594921 ID=MS.gene71979.t1;Parent=MS.gene71979
chr8.1 exon 22594921 22595023 22594921 ID=MS.gene71979.t1.exon1;Parent=MS.gene71979.t1
chr8.1 CDS 22594921 22595023 22594921 ID=cds.MS.gene71979.t1;Parent=MS.gene71979.t1
chr8.1 exon 22595225 22595529 22595225 ID=MS.gene71979.t1.exon2;Parent=MS.gene71979.t1
chr8.1 CDS 22595225 22595529 22595225 ID=cds.MS.gene71979.t1;Parent=MS.gene71979.t1
chr8.1 exon 22595624 22595703 22595624 ID=MS.gene71979.t1.exon3;Parent=MS.gene71979.t1
chr8.1 CDS 22595624 22595703 22595624 ID=cds.MS.gene71979.t1;Parent=MS.gene71979.t1
chr8.1 exon 22595787 22596114 22595787 ID=MS.gene71979.t1.exon4;Parent=MS.gene71979.t1
chr8.1 CDS 22595787 22596114 22595787 ID=cds.MS.gene71979.t1;Parent=MS.gene71979.t1
Gene Sequence

>MS.gene71979

ATGATGATGATTGAAAAGGAAGACTTGGGTTTGAGTCTTAGCTTGAACTTCTTTCACAATAACTCTTCTCACAAACCATCTTCCATCCAAACTTTCACTTCAGGTATGCATTTTTTTTTCTTCCATTCTCTAGATCCACACAAGTATTTTTTTAGATCATGGATTCAAACCAGGATGACTACGAAATGCTAAACTTAAACCTAACGATTTCAGTATTGTCAGTTGAGTTAGGTCTTACAGACACATTAAAGTTTTTAATTCAACAAAACATAAATGATATTCAAAATGATTTTTCCTCGTACAGATCGGAAATTGGAAACATGCAGAGGAGAGAGTGGAAAATACCTACGAGGAATCGACGTGAATCGGTTACCATCTACAGCTATTGAATGCCAAGAGGAAGAAGAAGCAGGGGTTTCATCTCCAAACAGCACAGTTTCAAGTGTTAGTGGAAAAAGAAGCTTGAGAGAAGAAGATCATGACGTGGAAAATAGAGGAAATATCAGTGATGAAGAAGACGCTGAAACTGCTAGGAAAAAACTTAGACTCTCTAAAGACCAATCAGCTATTCTTGAAGAAACTTTCAAAGAACACAATACCCTTAATCCCGTAATTAATCTATCTCAATACCAATCAACTTCCTTAATTATTTTATTAATTTTTTGTTTATTTTTTTACTAATTTGGTTTTTTGTTTTGTTTAGAAGCAAAAGTTGGCACTTGCAAAGCAACTTGGTCTTCGTCCAAGACAAGTAGAAGTCTGGTTCCAAAACAGAAGAGCTAGGTTTGTTATTTAAAAGTAAAATTTCAATTAAGCAATGATTTAATTAGTATTTTTAATTTATGATTTGAAATTATTTATTATAGGACGAAGCTGAAGCAAACAGAGGTTGATTGTGAAGTGTTGAAAAGGTGCTGTGAAAATCTAACGGAGGAAAATAGGAGACTACAGAAGGAAGTTCAAGAGCTTAGAGCACTGAAACTTTCCCCACAATTTTACATGCAAATGACTCCACCAACTACTCTTACTATGTGCCCTTCTTGTGAACGTGTGGCTGTTCCATCTAATGCTTGTGTTGATGCATCTAACCGTCACCATTCTATGGCCCAAGCCCATCCTCGGGCTGTGCCTATAGGCCCATGGGCTTCTGCTGCTCCAGTCACAAATAGGATGTTTGATGTTTTCCGTCAATGA
Protein sequence

>MS.gene71979.t1

MMMIEKEDLGLSLSLNFFHNNSSHKPSSIQTFTSDRKLETCRGESGKYLRGIDVNRLPSTAIECQEEEEAGVSSPNSTVSSVSGKRSLREEDHDVENRGNISDEEDAETARKKLRLSKDQSAILEETFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSNACVDASNRHHSMAQAHPRAVPIGPWASAAPVTNRMFDVFRQ