Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72012.t1 | PNX89523.1 | 39.5 | 349 | 194 | 6 | 24 | 370 | 1 | 334 | 1.90E-11 | 80.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72012.t1 | A0A2K3MFE8 | 39.5 | 349 | 194 | 6 | 24 | 370 | 1 | 334 | 1.3e-11 | 80.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene72012.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 0 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTATTTAAAAAAGAACAC+AGG | + | 14609:3710-3729 | MS.gene72012:intron | 15.0% |
!!! | AAATGATAACAATTTAAAAC+AGG | - | 14609:4652-4671 | None:intergenic | 15.0% |
!!! | AATTACTGTTATATAGTTTT+TGG | + | 14609:4611-4630 | MS.gene72012:intron | 15.0% |
! | AAATCAAAGAAATTATGTGG+AGG | - | 14609:4358-4377 | None:intergenic | 25.0% |
! | AGTACACAAAATCTTAGATA+CGG | - | 14609:3370-3389 | None:intergenic | 25.0% |
! | GCAAAATCAAAGAAATTATG+TGG | - | 14609:4361-4380 | None:intergenic | 25.0% |
!!! | CATTTGTTGTTACATGTTTA+AGG | + | 14609:3257-3276 | MS.gene72012:intron | 25.0% |
AAATATATTGCAGAGTGACA+AGG | - | 14609:3453-3472 | None:intergenic | 30.0% | |
AGTACACATTATCGTAGATA+CGG | - | 14609:3557-3576 | None:intergenic | 30.0% | |
ATTACAGAGTGACAAAAAAC+TGG | - | 14609:3601-3620 | None:intergenic | 30.0% | |
TATAATTCATACTCCTCCAA+GGG | - | 14609:4130-4149 | None:intergenic | 30.0% | |
TTACAGAGTGACAAAAAACT+GGG | - | 14609:3600-3619 | None:intergenic | 30.0% | |
TTGTTACTAAACTTTGAGTG+TGG | + | 14609:3154-3173 | MS.gene72012:intron | 30.0% | |
AAAATCTACCGGATACCAAA+AGG | - | 14609:3228-3247 | None:intergenic | 35.0% | |
AAATCTACCGGATACCAAAA+GGG | - | 14609:3227-3246 | None:intergenic | 35.0% | |
AAGTGGTTGTTGAAGTATGA+TGG | - | 14609:3830-3849 | None:intergenic | 35.0% | |
ACCCATATGTTATGTATGCT+AGG | + | 14609:4900-4919 | MS.gene72012:CDS | 35.0% | |
ACTCCTTAGCCTATAGAAAA+AGG | - | 14609:3939-3958 | None:intergenic | 35.0% | |
ATACTGCGTCTAAGTTACAA+CGG | + | 14609:3992-4011 | MS.gene72012:CDS | 35.0% | |
ATCTTCATCGTTGATATCCA+TGG | - | 14609:4389-4408 | None:intergenic | 35.0% | |
ATTACAGAGTGACAACAAAC+AGG | - | 14609:3414-3433 | None:intergenic | 35.0% | |
CCCATATGTTATGTATGCTA+GGG | + | 14609:4901-4920 | MS.gene72012:CDS | 35.0% | |
CCCTAGCATACATAACATAT+GGG | - | 14609:4904-4923 | None:intergenic | 35.0% | |
GGTAACAATGGTGAAAACAT+GGG | + | 14609:4469-4488 | MS.gene72012:CDS | 35.0% | |
GTATAATTCATACTCCTCCA+AGG | - | 14609:4131-4150 | None:intergenic | 35.0% | |
TCAAAGAAATTATGTGGAGG+CGG | - | 14609:4355-4374 | None:intergenic | 35.0% | |
TCATACTTCAACAACCACTT+TGG | + | 14609:3830-3849 | MS.gene72012:CDS | 35.0% | |
TCCCTAGCATACATAACATA+TGG | - | 14609:4905-4924 | None:intergenic | 35.0% | |
TTCTTGTGTGTGCATAATAG+TGG | - | 14609:3346-3365 | None:intergenic | 35.0% | |
TTGATTGGCATCATGAACTT+CGG | - | 14609:4302-4321 | None:intergenic | 35.0% | |
TTTACAGAGTGACATCAAAC+TGG | - | 14609:3639-3658 | None:intergenic | 35.0% | |
! | GAAGTTGTCACTTGTAATGT+AGG | + | 14609:3790-3809 | MS.gene72012:intron | 35.0% |
! | TTATTTTCCTGTCTCCCTTT+TGG | + | 14609:3210-3229 | MS.gene72012:intron | 35.0% |
AACATCAATGCCAAGATCGA+TGG | - | 14609:4194-4213 | None:intergenic | 40.0% | |
AACCAACAACAAGGCAAACA+TGG | - | 14609:3479-3498 | None:intergenic | 40.0% | |
AACGATGAAGATGTGGAAGA+TGG | + | 14609:4397-4416 | MS.gene72012:CDS | 40.0% | |
ACTCGTGCAACAAATCTTCT+TGG | - | 14609:4689-4708 | None:intergenic | 40.0% | |
ATCCTACTTACAGATGCCAT+GGG | + | 14609:4734-4753 | MS.gene72012:CDS | 40.0% | |
ATGTTTGCCTTCTTGTTGGT+TGG | + | 14609:3289-3308 | MS.gene72012:CDS | 40.0% | |
GACTATGTTTGCCTTCTTGT+TGG | + | 14609:3285-3304 | MS.gene72012:CDS | 40.0% | |
GCAGCATCAAAGAAGTTATG+CGG | - | 14609:4436-4455 | None:intergenic | 40.0% | |
GGATATCAACGATGAAGATG+TGG | + | 14609:4390-4409 | MS.gene72012:CDS | 40.0% | |
GGGTAACAATGGTGAAAACA+TGG | + | 14609:4468-4487 | MS.gene72012:CDS | 40.0% | |
GTCACTTGTAATGTAGGATG+AGG | + | 14609:3796-3815 | MS.gene72012:intron | 40.0% | |
GTGCAACAAATCTTCTTGGT+AGG | - | 14609:4685-4704 | None:intergenic | 40.0% | |
GTGGGAATGTGGCTAATAAT+GGG | + | 14609:4497-4516 | MS.gene72012:CDS | 40.0% | |
TAAGACACACTTACCTTGTC+TGG | - | 14609:3120-3139 | None:intergenic | 40.0% | |
TCATCATCCAACCAACAACA+AGG | - | 14609:3488-3507 | None:intergenic | 40.0% | |
TCATCATCCAACCAACAAGA+AGG | - | 14609:3299-3318 | None:intergenic | 40.0% | |
TGAAGCCATGCAAAATCTAC+CGG | - | 14609:3239-3258 | None:intergenic | 40.0% | |
TGATTGGCATCATGAACTTC+GGG | - | 14609:4301-4320 | None:intergenic | 40.0% | |
TGTCAGACTTGCAGAATACA+TGG | + | 14609:4537-4556 | MS.gene72012:CDS | 40.0% | |
TTATGTATGCTAGGGAAGCT+CGG | + | 14609:4909-4928 | MS.gene72012:CDS | 40.0% | |
! | GGACCTTTTTCTATAGGCTA+AGG | + | 14609:3933-3952 | MS.gene72012:CDS | 40.0% |
! | GGTGTTTTCATAGGAAGTGA+GGG | + | 14609:3905-3924 | MS.gene72012:CDS | 40.0% |
! | GTGTTTTCATAGGAAGTGAG+GGG | + | 14609:3906-3925 | MS.gene72012:CDS | 40.0% |
! | GTTTTCACCATTGTTACCCA+TGG | - | 14609:4467-4486 | None:intergenic | 40.0% |
! | TGGTGTTTTCATAGGAAGTG+AGG | + | 14609:3904-3923 | MS.gene72012:CDS | 40.0% |
!! | AATTATGTGGAGGCGGATTT+TGG | - | 14609:4348-4367 | None:intergenic | 40.0% |
!! | AGAGATTTGTTACGGAGAAC+CGG | + | 14609:4834-4853 | MS.gene72012:CDS | 40.0% |
!! | AGATTTGTTGCACGAGTGTT+TGG | + | 14609:4692-4711 | MS.gene72012:CDS | 40.0% |
!! | ATGTTTGCCTTGTTGTTGGT+TGG | + | 14609:3478-3497 | MS.gene72012:intron | 40.0% |
!! | ATTATGTGGAGGCGGATTTT+GGG | - | 14609:4347-4366 | None:intergenic | 40.0% |
!! | GATTTGTTGCACGAGTGTTT+GGG | + | 14609:4693-4712 | MS.gene72012:CDS | 40.0% |
!!! | TCGAGGTTTGGTGTTTTCAT+AGG | + | 14609:3896-3915 | MS.gene72012:CDS | 40.0% |
AATGGTGAAAACATGGGTGC+AGG | + | 14609:4475-4494 | MS.gene72012:CDS | 45.0% | |
AGACGCAGTATGAGACCTAA+CGG | - | 14609:3983-4002 | None:intergenic | 45.0% | |
ATCGTCGTCGTTGTCTTCAT+CGG | - | 14609:4167-4186 | None:intergenic | 45.0% | |
ATGAACTACGACACAGAGTC+TGG | + | 14609:3855-3874 | MS.gene72012:CDS | 45.0% | |
CACAACAATCGATCCAGACA+AGG | + | 14609:3104-3123 | MS.gene72012:CDS | 45.0% | |
CATCCTACTTACAGATGCCA+TGG | + | 14609:4733-4752 | MS.gene72012:CDS | 45.0% | |
CATGGCATCTGTAAGTAGGA+TGG | - | 14609:4735-4754 | None:intergenic | 45.0% | |
CATGGTGAAGACTAGCAATC+TGG | + | 14609:4555-4574 | MS.gene72012:CDS | 45.0% | |
CGTCTAAGTTACAACGGACA+GGG | + | 14609:3998-4017 | MS.gene72012:CDS | 45.0% | |
CTATAGGCTAAGGAGTTTGC+TGG | + | 14609:3943-3962 | MS.gene72012:CDS | 45.0% | |
GAACTTCCTGAATGTAAGCG+CGG | - | 14609:3082-3101 | None:intergenic | 45.0% | |
GACGATGATTCCATCGATCT+TGG | + | 14609:4181-4200 | MS.gene72012:CDS | 45.0% | |
GCATCAAAGAAGTTATGCGG+AGG | - | 14609:4433-4452 | None:intergenic | 45.0% | |
GCATCTGTAAGTAGGATGGT+GGG | - | 14609:4731-4750 | None:intergenic | 45.0% | |
GGCATTGTGTGGTTGTTGAT+TGG | - | 14609:4317-4336 | None:intergenic | 45.0% | |
GGTGGGAATGTGGCTAATAA+TGG | + | 14609:4496-4515 | MS.gene72012:CDS | 45.0% | |
GTCGTAGTTCATCACCAAAG+TGG | - | 14609:3847-3866 | None:intergenic | 45.0% | |
GTCTAAGTTACAACGGACAG+GGG | + | 14609:3999-4018 | MS.gene72012:CDS | 45.0% | |
GTCTGGTTAGAAGACACAAG+AGG | + | 14609:3872-3891 | MS.gene72012:CDS | 45.0% | |
GTGAAGACTAGCAATCTGGT+AGG | + | 14609:4559-4578 | MS.gene72012:intron | 45.0% | |
TAGAAGACACAAGAGGTTCG+AGG | + | 14609:3879-3898 | MS.gene72012:CDS | 45.0% | |
! | GACCATGTTTGCCTTGTTGT+TGG | + | 14609:3474-3493 | MS.gene72012:intron | 45.0% |
! | GGTATCCGGTAGATTTTGCA+TGG | + | 14609:3231-3250 | MS.gene72012:intron | 45.0% |
! | TGTGGCTAATAATGGGAGAG+TGG | + | 14609:4504-4523 | MS.gene72012:CDS | 45.0% |
!! | CGGGTGGAAGAGATTTGTTA+CGG | + | 14609:4826-4845 | MS.gene72012:CDS | 45.0% |
!! | CTTTGATTTTGCTGCTGCCA+TGG | + | 14609:4369-4388 | MS.gene72012:CDS | 45.0% |
!! | TGGCAGTTGGGAAAAGTGTT+AGG | + | 14609:4858-4877 | MS.gene72012:CDS | 45.0% |
ACATCAACATCCGCTGGATC+CGG | - | 14609:4256-4275 | None:intergenic | 50.0% | |
ACTCGACATGACCGAGCTAA+CGG | + | 14609:4045-4064 | MS.gene72012:CDS | 50.0% | |
ACTTTCCGTGCAGGATCAAG+TGG | + | 14609:4762-4781 | MS.gene72012:CDS | 50.0% | |
AGCCCATGGCATCTGTAAGT+AGG | - | 14609:4739-4758 | None:intergenic | 50.0% | |
AGGATCAAGTGGAAGGACAG+AGG | + | 14609:4773-4792 | MS.gene72012:CDS | 50.0% | |
ATCTCGGCAGCAATCAGGAA+AGG | - | 14609:4100-4119 | None:intergenic | 50.0% | |
CTCCAAGGGATCCAGTATCT+CGG | - | 14609:4116-4135 | None:intergenic | 50.0% | |
GACACAAGAGGTTCGAGGTT+TGG | + | 14609:3884-3903 | MS.gene72012:CDS | 50.0% | |
GCATCATGAACTTCGGGATG+AGG | - | 14609:4295-4314 | None:intergenic | 50.0% | |
GCGTCTAAGTTACAACGGAC+AGG | + | 14609:3997-4016 | MS.gene72012:CDS | 50.0% | |
GCTGTTGCCATGGGTAACAA+TGG | + | 14609:4457-4476 | MS.gene72012:CDS | 50.0% | |
GGCATCTGTAAGTAGGATGG+TGG | - | 14609:4732-4751 | None:intergenic | 50.0% | |
GTGAAAACATGGGTGCAGGT+GGG | + | 14609:4479-4498 | MS.gene72012:CDS | 50.0% | |
GTTGTCTTCATCGGATGACG+AGG | - | 14609:4158-4177 | None:intergenic | 50.0% | |
TCATGAACTTCGGGATGAGG+AGG | - | 14609:4292-4311 | None:intergenic | 50.0% | |
TCCTTCCACTTGATCCTGCA+CGG | - | 14609:4770-4789 | None:intergenic | 50.0% | |
TCGGGATGAGGAGGAGAATT+GGG | - | 14609:4283-4302 | None:intergenic | 50.0% | |
TTCAACTCCTGTGGCAGAAC+CGG | + | 14609:4234-4253 | MS.gene72012:CDS | 50.0% | |
TTCGGGATGAGGAGGAGAAT+TGG | - | 14609:4284-4303 | None:intergenic | 50.0% | |
! | ATTTGTTACGGAGAACCGGC+TGG | + | 14609:4838-4857 | MS.gene72012:CDS | 50.0% |
! | CCTGTCTCCCTTTTGGTATC+CGG | + | 14609:3217-3236 | MS.gene72012:intron | 50.0% |
! | GGACGCGGACCTTTTTCTAT+AGG | + | 14609:3927-3946 | MS.gene72012:CDS | 50.0% |
!! | AGGCGGATTTTGGGCATCAT+CGG | - | 14609:4338-4357 | None:intergenic | 50.0% |
!! | TCTGTAAGTAGGATGGTGGG+CGG | - | 14609:4728-4747 | None:intergenic | 50.0% |
CCAGTATCTCGGCAGCAATC+AGG | - | 14609:4105-4124 | None:intergenic | 55.0% | |
CCGGATACCAAAAGGGAGAC+AGG | - | 14609:3220-3239 | None:intergenic | 55.0% | |
CCTCTCACGAACCGTTAGCT+CGG | - | 14609:4059-4078 | None:intergenic | 55.0% | |
CCTGATTGCTGCCGAGATAC+TGG | + | 14609:4102-4121 | MS.gene72012:CDS | 55.0% | |
CGAGATACTGGATCCCTTGG+AGG | + | 14609:4114-4133 | MS.gene72012:CDS | 55.0% | |
CGGCAGCAATCAGGAAAGGA+GGG | - | 14609:4096-4115 | None:intergenic | 55.0% | |
GAAATGCCGCTGGAGGAAGA+TGG | - | 14609:4799-4818 | None:intergenic | 55.0% | |
GATGCTGCTGCTGTTGCCAT+GGG | + | 14609:4448-4467 | MS.gene72012:CDS | 55.0% | |
GCACGGAAAGTCAAAGCCCA+TGG | - | 14609:4753-4772 | None:intergenic | 55.0% | |
GCAGTATGAGACCTAACGGC+TGG | - | 14609:3979-3998 | None:intergenic | 55.0% | |
GGACAGGGGCTGTTCTACAT+GGG | + | 14609:4013-4032 | MS.gene72012:CDS | 55.0% | |
GGTGAAAACATGGGTGCAGG+TGG | + | 14609:4478-4497 | MS.gene72012:CDS | 55.0% | |
GGTGCAACATCAACATCCGC+TGG | - | 14609:4262-4281 | None:intergenic | 55.0% | |
GGTTCTGCCACAGGAGTTGA+AGG | - | 14609:4235-4254 | None:intergenic | 55.0% | |
GTATGAGACCTAACGGCTGG+TGG | - | 14609:3976-3995 | None:intergenic | 55.0% | |
GTATGCTAGGGAAGCTCGGA+TGG | + | 14609:4913-4932 | MS.gene72012:CDS | 55.0% | |
TCATAGGAAGTGAGGGGACG+CGG | + | 14609:3912-3931 | MS.gene72012:CDS | 55.0% | |
TCCGTGCAGGATCAAGTGGA+AGG | + | 14609:4766-4785 | MS.gene72012:CDS | 55.0% | |
TCCTCCAGCGGCATTTCTCA+GGG | + | 14609:4802-4821 | MS.gene72012:CDS | 55.0% | |
TCGGCAGCAATCAGGAAAGG+AGG | - | 14609:4097-4116 | None:intergenic | 55.0% | |
TCTGCCACAGGAGTTGAAGG+AGG | - | 14609:4232-4251 | None:intergenic | 55.0% | |
TGATGCTGCTGCTGTTGCCA+TGG | + | 14609:4447-4466 | MS.gene72012:CDS | 55.0% | |
TGCACCTCCTTCAACTCCTG+TGG | + | 14609:4225-4244 | MS.gene72012:CDS | 55.0% | |
TGCCGAGATACTGGATCCCT+TGG | + | 14609:4111-4130 | MS.gene72012:CDS | 55.0% | |
TGGGCATCATCGGCATTGTG+TGG | - | 14609:4328-4347 | None:intergenic | 55.0% | |
TTCCTCCAGCGGCATTTCTC+AGG | + | 14609:4801-4820 | MS.gene72012:CDS | 55.0% | |
! | ACAGGAGTTGAAGGAGGTGC+AGG | - | 14609:4226-4245 | None:intergenic | 55.0% |
! | CACTTTTCCCAACTGCCAGC+CGG | - | 14609:4856-4875 | None:intergenic | 55.0% |
! | TGGGCTTTGACTTTCCGTGC+AGG | + | 14609:4753-4772 | MS.gene72012:CDS | 55.0% |
CAGAGGCCATCTTCCTCCAG+CGG | + | 14609:4790-4809 | MS.gene72012:CDS | 60.0% | |
CATGGGTGCAGGTGGGAATG+TGG | + | 14609:4486-4505 | MS.gene72012:CDS | 60.0% | |
CCGAGCTAACGGTTCGTGAG+AGG | + | 14609:4056-4075 | MS.gene72012:CDS | 60.0% | |
CCTCCAGCGGCATTTCTCAG+GGG | + | 14609:4803-4822 | MS.gene72012:CDS | 60.0% | |
CGGACAGGGGCTGTTCTACA+TGG | + | 14609:4012-4031 | MS.gene72012:CDS | 60.0% | |
GAGCACTTCCACCAGCCGTT+AGG | + | 14609:3965-3984 | MS.gene72012:CDS | 60.0% | |
TGTGGCAGAACCGGATCCAG+CGG | + | 14609:4243-4262 | MS.gene72012:CDS | 60.0% | |
! | GGAGTTGAAGGAGGTGCAGG+AGG | - | 14609:4223-4242 | None:intergenic | 60.0% |
ACGGAGAACCGGCTGGCAGT+TGG | + | 14609:4845-4864 | MS.gene72012:CDS | 65.0% | |
CAGCGGCATTTCTCAGGGGC+GGG | + | 14609:4807-4826 | MS.gene72012:CDS | 65.0% | |
CCAGCGGCATTTCTCAGGGG+CGG | + | 14609:4806-4825 | MS.gene72012:CDS | 65.0% | |
CCCCTGAGAAATGCCGCTGG+AGG | - | 14609:4806-4825 | None:intergenic | 65.0% | |
CGGAGAACCGGCTGGCAGTT+GGG | + | 14609:4846-4865 | MS.gene72012:CDS | 65.0% | |
GCTGGATCCGGTTCTGCCAC+AGG | - | 14609:4244-4263 | None:intergenic | 65.0% | |
CCGCCCCTGAGAAATGCCGC+TGG | - | 14609:4809-4828 | None:intergenic | 70.0% | |
CGGCATTTCTCAGGGGCGGG+TGG | + | 14609:4810-4829 | MS.gene72012:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
14609 | gene | 3075 | 4943 | 3075 | ID=MS.gene72012 |
14609 | mRNA | 3075 | 4943 | 3075 | ID=MS.gene72012.t1;Parent=MS.gene72012 |
14609 | exon | 3075 | 3125 | 3075 | ID=MS.gene72012.t1.exon1;Parent=MS.gene72012.t1 |
14609 | CDS | 3075 | 3125 | 3075 | ID=cds.MS.gene72012.t1;Parent=MS.gene72012.t1 |
14609 | exon | 3279 | 3325 | 3279 | ID=MS.gene72012.t1.exon2;Parent=MS.gene72012.t1 |
14609 | CDS | 3279 | 3325 | 3279 | ID=cds.MS.gene72012.t1;Parent=MS.gene72012.t1 |
14609 | exon | 3725 | 3731 | 3725 | ID=MS.gene72012.t1.exon3;Parent=MS.gene72012.t1 |
14609 | CDS | 3725 | 3731 | 3725 | ID=cds.MS.gene72012.t1;Parent=MS.gene72012.t1 |
14609 | exon | 3812 | 4576 | 3812 | ID=MS.gene72012.t1.exon4;Parent=MS.gene72012.t1 |
14609 | CDS | 3812 | 4576 | 3812 | ID=cds.MS.gene72012.t1;Parent=MS.gene72012.t1 |
14609 | exon | 4680 | 4943 | 4680 | ID=MS.gene72012.t1.exon5;Parent=MS.gene72012.t1 |
14609 | CDS | 4680 | 4943 | 4680 | ID=cds.MS.gene72012.t1;Parent=MS.gene72012.t1 |
Gene Sequence |
Protein sequence |